HHsearch alignment for GI: 254780306 and conserved domain: PRK07561
>PRK07561 DNA topoisomerase I; Validated.
Probab=99.98 E-value=8.7e-32 Score=257.66 Aligned_cols=161 Identities=32% Similarity=0.514 Sum_probs=145.2
Q ss_pred CCCCCEEEEEECCCCCEEEECCCCCCCCCCCCCCCCHHHCCHHHHHHHHH----CCHHHCCCCCCCCEEEEEECCCCCEE
Q ss_conf 99996699982697422773488777613378998842548999999861----52551577789874999115876526
Q gi|254780306|r 659 LETKESVTLRSGRFGLYVQRGDGKDAKRCSLPKTWKSDSVDYDKAMSLLS----LPREIGIHPETQKNIIAGTGKYGYYL 734 (837)
Q Consensus 659 P~~G~~I~lk~GryGpYvq~Ge~~kpkr~si~k~~~~~~itle~Al~LLs----LPr~lG~~pe~g~~I~~~~GryGpYi 734 (837)
T Consensus 602 ~~~~~~~~~r~gk~G~~i~~~~~~~~~~~~~p~~~~~~~~~~~~~~~l~~~~~~g~r~LG~dP~tg~~V~~k~GryGpyv 681 (878)
T PRK07561 602 DLEGLPCVVRIGRFGPYLEGEREEEPIKASLPQDITPADLDPEQVEQILKQKTEGPEKLGTHPETGEPVYLLFGPYGPYV 681 (878)
T ss_pred CCCCCCCEEEEECCCCCEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCCEE
T ss_conf 77898623664167672021058765310267655865478788877641246787323668999986899935821869
Q ss_pred EECC--------EECCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHCCCCCC-CCCEEEEECCCCCEEEE-
Q ss_conf 1678--------1112488775143579999999983651134434454432010267898-98469960685452536-
Q gi|254780306|r 735 NHDG--------AYTKLESIEQVLTIDLEQAISCITEKKKIEKSSRKNSKNQGHVIGTHPE-GGSITVHNGRYGPYLHW- 804 (837)
Q Consensus 735 ~~~~--------~~~sl~~~~~~~~I~l~~Aieli~~~k~~~~~~~~~~~~~~~~lg~~p~-~~~i~i~~GryGpYi~~- 804 (837)
T Consensus 682 qlG~~~~~~~Kpk~asl~k~~~~~~itle~Al~LlsLP---------------r~lG~~pe~g~~I~a~~GrfGPY~~~d 746 (878)
T PRK07561 682 QLGDVTEENPKPKRASLPKGVKPEDVTLEMALGLLSLP---------------RLLGEHPETGGKIQAGLGRFGPYVVHD 746 (878)
T ss_pred EECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCC---------------HHHCCCCCCCCEEEECCCCCCCCEEEC
T ss_conf 80477766778764456899980426899999997075---------------753788789987998767877667404
Q ss_pred ----CCEEEECCCCCCHHHCCHHHHHHHHHHHHH
Q ss_conf ----788875657889677899999999987772
Q gi|254780306|r 805 ----KKINASLSKEESPDTVDLEKALKILNIKKQ 834 (837)
Q Consensus 805 ----gk~Na~ipk~~~~e~lt~e~a~~li~~k~~ 834 (837)
T Consensus 747 g~k~g~~~~sl~~~~~~~~i~l~~Av~lia~~k~ 780 (878)
T PRK07561 747 KGKGEKDYRSLKKEDDVLTVDLERALELLAMPKK 780 (878)
T ss_pred CCCCCCCCCCCCCCCCCEEECHHHHHHHHHHHHC
T ss_conf 7766764145799887645159999999961321