HHsearch alignment for GI: 254780306 and conserved domain: PRK07941
>PRK07941 DNA topoisomerase I; Validated.
Probab=100.00 E-value=6e-33 Score=266.37 Aligned_cols=161 Identities=35% Similarity=0.601 Sum_probs=143.6
Q ss_pred CCCCCEEEEEECCCCCEEEE--CCCC----CCCCCCCCCCCCHHHCCHHHHHHHHHCC---HHHCCCCCCCCEEEEEECC
Q ss_conf 99996699982697422773--4887----7761337899884254899999986152---5515777898749991158
Q gi|254780306|r 659 LETKESVTLRSGRFGLYVQR--GDGK----DAKRCSLPKTWKSDSVDYDKAMSLLSLP---REIGIHPETQKNIIAGTGK 729 (837)
Q Consensus 659 P~~G~~I~lk~GryGpYvq~--Ge~~----kpkr~si~k~~~~~~itle~Al~LLsLP---r~lG~~pe~g~~I~~~~Gr 729 (837)
T Consensus 638 ~~~g~~l~~r~gk~G~f~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~r~LG~dP~tg~~V~lk~Gr 717 (933)
T PRK07941 638 DAEGRPVYVRVGRNGPYLERMVGTGDDGEPEPQRANLPDSLTPDELTLEVAEKLFATPQEGRELGVDPETGHEIVAKEGR 717 (933)
T ss_pred CCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCEEEEECCC
T ss_conf 67897547861577664000247688886430215678666865343777888750567897223589999868994179
Q ss_pred CCCEEEE-------------------------CCEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHCCC
Q ss_conf 7652616-------------------------781112488775143579999999983651134434454432010267
Q gi|254780306|r 730 YGYYLNH-------------------------DGAYTKLESIEQVLTIDLEQAISCITEKKKIEKSSRKNSKNQGHVIGT 784 (837)
Q Consensus 730 yGpYi~~-------------------------~~~~~sl~~~~~~~~I~l~~Aieli~~~k~~~~~~~~~~~~~~~~lg~ 784 (837)
T Consensus 718 yGpyv~~~~~e~~~~~~~~~~~~~~~~~~~~~Kpk~asl~k~~~~~~itLe~Al~LlsLP---------------R~lG~ 782 (933)
T PRK07941 718 FGPYVTEVLPEPEEDGAAAKTAAKKKKKETGPKPRTGSLLRSMDLQTVTLEDALKLLSLP---------------RVVGV 782 (933)
T ss_pred CCCEEEEECCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCC---------------HHHCC
T ss_conf 877242004775200000011011344334678775667899980206899999997084---------------63189
Q ss_pred CCC-CCCEEEEECCCCCEEEECCEEEECCCCCCHHHCCHHHHHHHHHHHHH
Q ss_conf 898-98469960685452536788875657889677899999999987772
Q gi|254780306|r 785 HPE-GGSITVHNGRYGPYLHWKKINASLSKEESPDTVDLEKALKILNIKKQ 834 (837)
Q Consensus 785 ~p~-~~~i~i~~GryGpYi~~gk~Na~ipk~~~~e~lt~e~a~~li~~k~~ 834 (837)
T Consensus 783 hPe~g~~I~a~~GrfGPYlk~~~~~~sL~~~~~~~~I~l~~Av~li~~~k~ 833 (933)
T PRK07941 783 DPASGEEITAQNGRYGPYLKRGTDSRSLATEEQIFTITLDEALKIYAEPKR 833 (933)
T ss_pred CCCCCCEEEECCCCCCCCCCCCCEEECCCCCCCCEECCHHHHHHHHHCHHH
T ss_conf 978998799756788766640883431698887512389999999955433