HHsearch alignment for GI: 254780306 and conserved domain: PRK08173

>PRK08173 DNA topoisomerase III; Validated.
Probab=100.00  E-value=0  Score=1153.21  Aligned_cols=698  Identities=25%  Similarity=0.387  Sum_probs=531.7

Q ss_pred             CEEEECCHHHHHHHHHHHCC-----------CCEEEEEECCCEECCCC-------------CCCCCCCCCCCEEEEECCC
Q ss_conf             18997790478778875089-----------98999942511007865-------------5786766674406887765
Q gi|254780306|r    2 NVIIVESPAKAKTISKYLGS-----------NYKVLSSFGHIRDLPAK-------------KGSVLPEKEFEMIWNIDPS   57 (837)
Q Consensus         2 ~LvIvEsP~kak~I~~~Lg~-----------~y~V~as~GHirdLp~~-------------~~~v~~~~~f~p~y~v~~~   57 (837)
T Consensus         4 ~LIIAEKPSvAk~IA~~Lg~~~k~~gy~e~~~y~Vtwa~GHL~eL~~Pe~y~~~~~kW~~~~LPiiP~~-f~--l~p~~~   80 (857)
T PRK08173          4 ALIIAEKPSVANDIARALGGFTKHDDYFESDEYVLSSAVGHLLEIAAPEEYEVKRGKWSFAHLPVIPPH-FD--LNPIAK   80 (857)
T ss_pred             CEEEECCHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCCCCCHHCCHHHCCCCHHHCCCCCCC-CE--EEECCC
T ss_conf             299982989999999985887466875047998999754514228980014643345651106878831-32--454333


Q ss_pred             HHHHHHHHHHHHHH--CCEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCHHHHHHHHHCCCCCC--HH
Q ss_conf             48999999999870--998999469970257999999999755125788716999980379899999986226469--89
Q gi|254780306|r   58 SQKHLQNIIHAVKS--STILILATDPDREGEAISWHVLDVLRQKNLIEKTKIQRVSFNAITKQVVLNAMKSPRDIN--LD  133 (837)
Q Consensus        58 ~kk~~~~i~~~~k~--a~~iilAtD~DREGE~Iawhi~e~l~~~~~~~~~~v~R~~f~eiT~~aI~~A~~n~r~~d--~~  133 (837)
T Consensus        81 ~~~q~kvi~~L~k~~dv~~II~AtD~DREGElI~~~I~~~~~-----~~kpvkRlw~sslT~~aI~~a~~nlr~~~~~~~  155 (857)
T PRK08173         81 TESRLKVLTKLIKRKDVDRLINACDAGREGELIFRLIAQHAK-----AKKPVQRLWLQSMTPQAIRDGFANLRSDEDMQP  155 (857)
T ss_pred             HHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHC-----CCCCEEEEEEECCCHHHHHHHHHCCCCCHHHHH
T ss_conf             788999999998656999899798898154699999999838-----999858899714899999999966677456689


Q ss_pred             HHHHHHHHHHHHHHHHHHHCHHHHHHCC--C---CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCEEE
Q ss_conf             9999999999898740113789886414--6---7653422689999999999996413765440012233157996542
Q gi|254780306|r  134 LVNAYLARRALDYLVGFNLSPILWQKLP--G---ARSAGRVQSVALRLICNRENQIESFVSEEYWSLSVLLETPRNDKFT  208 (837)
Q Consensus       134 Lv~A~~aRr~lD~lvG~~lSp~L~rk~~--~---~lSaGRVQtp~L~lIveRe~eI~~F~p~~y~~i~a~~~~~~~~~f~  208 (837)
T Consensus       156 L~~Aa~aR~~aDwLvG~N~SRa~T~~~~~~g~~~~lSvGRVQTPtL~lIv~Re~eI~~F~p~~Y~~i~a~f~~~~g-~~~  234 (857)
T PRK08173        156 LADAARCRSEADWLVGINGTRAMTAFNSKGGGFFLTTVGRVQTPTLSIVVEREEKIRRFVPRDYWEVRAEFVAAAG-FYE  234 (857)
T ss_pred             HHHHHHHHHHHHHEEEEEHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEECCC-EEE
T ss_conf             9999999987511320340678999876417856667866277888999999999984699755999999972575-035


Q ss_pred             EEEEEECCEE------ECCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHH
Q ss_conf             2331035833------0331011356667776420015630100002332224685210379999988760888999999
Q gi|254780306|r  209 AHLTDFNGQR------IEKKSISNKKEADDLISFVKKATYSVEKIENKPIKRNPWPAFTTSTLQQVASSRLGFSASHTMR  282 (837)
Q Consensus       209 a~l~~~~~~~------~~~~~~~~~~~a~~~~~~~~~~~~~V~~v~~k~~~~~Pp~Pf~tstLQq~As~~lg~sa~~Tm~  282 (837)
T Consensus       235 g~~~~~~~~~~~~~~~~~~~rl~d~~~A~~i~~~~~~~~~~V~~-e~K~~~~~pP~lf~Lt~LQ~eAn~~~g~Sa~~TL~  313 (857)
T PRK08173        235 GRWFDPKFKKDEFDPEKRASRLWSLAAAEAIVAACRGKPGTVTE-ESKPSTQLSPLLFDLTSLQREANSRFGFSAKNTLG  313 (857)
T ss_pred             EEEECCCCCCCCCHHHHHHHHHHCHHHHHHHHHHHCCCCEEEEE-EEEECCCCCCCCCCHHHHHHHHHHHCCCCHHHHHH
T ss_conf             57713234544211455554540899999999996389758998-73123678989946899999999854999999999


Q ss_pred             HHHHHHCCCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCC-CCC------------CCCCCCCCC-CCCCCCC
Q ss_conf             99876213556721224553147554444305689999765520011-237------------631111255-6668877
Q gi|254780306|r  283 IAQKLYEGIDVNGEIVGLITYMRTDGVHMSPDALEAVRRSITSHYGD-HYL------------PEKPRIYSS-KSKNAQE  348 (837)
Q Consensus       283 iAQ~LYE~~~~~~~~~GlITYpRTDS~~ls~ea~~~~r~~i~~~~g~-~~l------------~~~~r~y~~-k~k~aQe  348 (837)
T Consensus       314 iAQ~LYEkh-------klITYPRTDS~~L~ed~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~kr~~dd~Kv----t  382 (857)
T PRK08173        314 LAQALYEKH-------KVLTYPRTDSRALPEDYLGTVKQTLEMLKESNNYLPHAKQILDKGWVKPNKRIFDNSKI----S  382 (857)
T ss_pred             HHHHHHCCC-------CCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCCCCC----C
T ss_conf             999986459-------97535787887589899999999999863453104678875223556745555687653----5


Q ss_pred             CCCCEEEEECCCCCCHHCCCCCHHHHHHHHHHHHHHHHHHHHHHEECCCEEEEEEEECCCEEEEEEEEEEEECCCHHHHH
Q ss_conf             76524773023464000001999999999999999999852221100100136774079639999987488058856763
Q gi|254780306|r  349 AHEAIRPNDFDFLPSKMKQFLDSDQFQLYNLIWKRSVASQMASAKFERTTVNIIATYNDQIGHLRTTGSLLCFDGFLKVW  428 (837)
Q Consensus       349 AHeAIrPT~~~~~p~~~~~~L~~de~klY~LI~~R~lasqm~~a~~~~~~v~i~~~~~~~~~~F~asg~~i~~~G~~~vy  428 (837)
T Consensus       383 dH~AIiPT~~--~p----~~Ls~~E~kiY~LI~rRfLa~f~~~a~~~~t~v~~~v~g~----~F~a~G~vi~~~GW~~vy  452 (857)
T PRK08173        383 DHFAIIPTLQ--AP----KSLSEPEQKLYDLVVKRFLAVFFPAAEFRVTTRITEVAGH----HFKTEGKVLVEPGWLAVY  452 (857)
T ss_pred             CCCCCCCCCC--CC----CCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEEECCC----EEEEEEEEEEECCHHHHH
T ss_conf             7777377655--64----3189999999999999999973753076668999997797----899998999246879871


Q ss_pred             CCCCCCCCCCHHHCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCHHHHHHHHH----------------HCCCCCCCCHH
Q ss_conf             26777632100101488645688211001101112346431017899874332----------------10256655157
Q gi|254780306|r  429 ENQYDQEKNSEEDILLPYISANEQLIATETNASQHFTEPPPRYSESSLIKKME----------------EIGIGRPSTYA  492 (837)
Q Consensus       429 ~~~~~~~~~~~~~~~LP~l~~g~~~~~~~~~~~~~~TkPP~rytEasLik~mE----------------~~GIGrPSTyA  492 (837)
T Consensus       453 ~~~~-----~~ed~~Lp~l~~Ge~v~~~~~~~~ek~TkPP~ryTEatLl~aME~agk~v~D~elk~~lk~~GiGTpATRA  527 (857)
T PRK08173        453 GKEA-----QGADANLVPVQKGEKVKTDKIAAVALTTKPPARYNEATLLSAMEGAGKLVDDDELREAMAAKGLGTPATRA  527 (857)
T ss_pred             CCCC-----CCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCHHH
T ss_conf             8656-----66546589889999766405675245168998669899999987402334889999998647899851088


Q ss_pred             HHHHHHHHCCEEECCCCCEEECCHHHHHCCCCCCC-CCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             89999973220221477122201142000022336-65568988999999999998626013478999986767665576
Q gi|254780306|r  493 TILETLYKRKYVIAEKRKILPQNTGRIVTAFLENF-FSQYVEYDFTADLEEKLDEISTGKLNWKEVLHEFWEEFIEKIDS  571 (837)
Q Consensus       493 ~II~~L~~R~YV~~~~~~l~pT~~G~~v~~~L~~~-f~~~~~~~fTa~~E~~ld~Ia~G~~~~~~~L~~Fy~~f~~~i~~  571 (837)
T Consensus       528 ~IIe~L~~r~Yi~r~~k~l~pT~kG~~li~~l~~~~~~~l~spemTa~WE~~L~~Ie~G~~~~~~Fm~~i~~~~~~iv~~  607 (857)
T PRK08173        528 AIIEGLLGEKYLVREGRELIPTAKAFQLMTLLRGLGVKELTSPELTGEWEYKLSQIERGNLSRDAFMQEIAQMTQQIVKR  607 (857)
T ss_pred             HHHHHHHHCCCEEEECCEEEECHHHHHHHHHHHCCCCHHHCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf             99999975786996298887876799999986403703205823799999999999859989999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEECCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             67755666776556766410245555676611433467773136871577611123434323332100122100001234
Q gi|254780306|r  572 IKKLRISNVLDILNDTLSSVIFPPKENNEDSRTCPECHTHSLSLKLSSKYGAFVGCTNYPECKYTRQLTSNPQDIPEMKE  651 (837)
Q Consensus       572 ~~~~~~~~v~d~l~~~~~~~~~~~~~~~~~~~~Cp~C~~g~L~~k~~gK~G~FigCSnyPeCk~t~~l~~~~~~~~~~~~  651 (837)
T Consensus       608 ~k~~~~--------~~~-----~-~~~~~~~~~CP~Cg-~~i~-----~~~k~y~C~---~C~f~i~k~i~gk~l~~~~~  664 (857)
T PRK08173        608 AKEYDS--------DTI-----P-GDYATLQTPCPNCG-GVVK-----ENYRRFACT---KCDFSISKIPGGRQFEIAEV  664 (857)
T ss_pred             HHHHHH--------CCC-----C-CCCCCCCCCCCCCC-CEEE-----ECCCEEECC---CCCEEEEEEECCCCCCHHHH
T ss_conf             985200--------024-----4-42233357888889-5167-----556189779---99778763207836899999


Q ss_pred             CCCCCCCCCCC--CEEEEEECC-CCCEEEECCCCCCCC-CCC-C-C---CCCHHHCCHHHHHHHHHCCHHHCCCCCCCCE
Q ss_conf             42014689999--669998269-742277348877761-337-8-9---9884254899999986152551577789874
Q gi|254780306|r  652 SVLLGNDLETK--ESVTLRSGR-FGLYVQRGDGKDAKR-CSL-P-K---TWKSDSVDYDKAMSLLSLPREIGIHPETQKN  722 (837)
Q Consensus       652 ~~~LG~dP~~G--~~I~lk~Gr-yGpYvq~Ge~~kpkr-~si-~-k---~~~~~~itle~Al~LLsLPr~lG~~pe~g~~  722 (837)
T Consensus       665 ~~Ll~~-~kt~~ikGF~sK~Gk~F~A~l~L~~d~~~~~k~~fdf~~~~~~~~~~~~~-------~~~~~~lg~CP~C~~~  736 (857)
T PRK08173        665 EELLRK-KEIGPLSGFRSKMGRPFSAILKLSDDETKNYKLEFDFGQDQGGEDGEAVD-------FSAQEPLGACPKCKGR  736 (857)
T ss_pred             HHHHHC-CCCCCCCCCCCCCCCCEEEEEEECCCCCCCCEEEEECCCCCCCCCCCCCC-------CCCCCCCCCCCCCCCC
T ss_conf             999977-98677667526799830179993345566632554136776655566433-------3356636789999982


Q ss_pred             EEEEECCCCC--EEE-ECCEECCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf             9991158765--261-6781112488775143579999999983651
Q gi|254780306|r  723 IIAGTGKYGY--YLN-HDGAYTKLESIEQVLTIDLEQAISCITEKKK  766 (837)
Q Consensus       723 I~~~~GryGp--Yi~-~~~~~~sl~~~~~~~~I~l~~Aieli~~~k~  766 (837)
T Consensus       737 v~e~~~~y~C~~~~~~~~~C~F~i~k~i~~k~i~~~~~~kLl~~gkT  783 (857)
T PRK08173        737 VFEHGMSYVCEKSVGPPKTCDFRSGKVILQQEISREQMAKLLTDGKT  783 (857)
T ss_pred             EEECCCEEECCCCCCCCCCCEEEECHHHHCCCCCHHHHHHHHHCCCC
T ss_conf             08857456515776889997179556780987899999999975991