HHsearch alignment for GI: 254780306 and conserved domain: PRK08174

>PRK08174 DNA topoisomerase III; Validated.
Probab=92.33  E-value=0.16  Score=30.37  Aligned_cols=123  Identities=12%  Similarity=0.111  Sum_probs=67.0

Q ss_pred             HHHHHHHHHHHHHHHH-HHHHEECCCEEEEEEEECCCEEEEEEEEEEEECCCHHHHHCCCCCCCCCCHHHCCCCCCCCCC
Q ss_conf             9999999999999985-222110010013677407963999998748805885676326777632100101488645688
Q gi|254780306|r  373 QFQLYNLIWKRSVASQ-MASAKFERTTVNIIATYNDQIGHLRTTGSLLCFDGFLKVWENQYDQEKNSEEDILLPYISANE  451 (837)
Q Consensus       373 e~klY~LI~~R~lasq-m~~a~~~~~~v~i~~~~~~~~~~F~asg~~i~~~G~~~vy~~~~~~~~~~~~~~~LP~l~~g~  451 (837)
T Consensus       193 QtPtL~lIveRE~EI~~F~p~~y~~i~~~~~~~~----~~f~a~~~--~~~~~~d--~~~r~-~~~~~a~~~~~~~~~~~  263 (670)
T PRK08174        193 QTPTLALVVDRDREIANFVPVPYWAIDVSLSAGG----QTFTAQWV--PPEQYCD--DEGRC-LQQPVAQQAAQQIRQAG  263 (670)
T ss_pred             HHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEECC----EEEEEEEE--CCCCCCC--HHCCC-CCHHHHHHHHHHHHCCC
T ss_conf             2466888999999998078863289999997489----15788874--2455621--22024-79999999999986489


Q ss_pred             CCCCEEEECCCCCCCCCCCCCHHHHHHHHHH-CCCCCCCCHHHHHHHHHHC-CEEE
Q ss_conf             2110011011123464310178998743321-0256655157899999732-2022
Q gi|254780306|r  452 QLIATETNASQHFTEPPPRYSESSLIKKMEE-IGIGRPSTYATILETLYKR-KYVI  505 (837)
Q Consensus       452 ~~~~~~~~~~~~~TkPP~rytEasLik~mE~-~GIGrPSTyA~II~~L~~R-~YV~  505 (837)
T Consensus       264 ~~~V~~v~~k~~~~~pP~Pf~tstLQ~~As~~lg~sa~~T-m~iAQ~LYE~~glIT  318 (670)
T PRK08174        264 SAQVVSVETERVREGAPLPFDLGTLQEVCSKKLGLGAQET-LDIAQALYETHKATT  318 (670)
T ss_pred             CEEEEEEEEEEEECCCCCCCCHHHHHHHHHHHHCCCHHHH-HHHHHHHHHCCCEEE
T ss_conf             7599999854542479999747999999998719888899-999999885288287