HHsearch alignment for GI: 254780306 and conserved domain: PRK08620
>PRK08620 DNA topoisomerase III; Provisional.
Probab=100.00 E-value=0 Score=1314.15 Aligned_cols=615 Identities=25% Similarity=0.396 Sum_probs=525.3
Q ss_pred CC-EEEECCHHHHHHHHHHH-----------CCCCEEEEEECCCEECCCCC-------------CCCCCCCCCCEEEEEC
Q ss_conf 91-89977904787788750-----------89989999425110078655-------------7867666744068877
Q gi|254780306|r 1 MN-VIIVESPAKAKTISKYL-----------GSNYKVLSSFGHIRDLPAKK-------------GSVLPEKEFEMIWNID 55 (837)
Q Consensus 1 M~-LvIvEsP~kak~I~~~L-----------g~~y~V~as~GHirdLp~~~-------------~~v~~~~~f~p~y~v~ 55 (837)
T Consensus 2 mK~LvIaEKPs~Ak~Iak~Lg~~~k~~gy~eG~~y~Vt~s~GHl~~L~~pe~y~~~~k~W~~~dLPiiP~~---~k~~~i 78 (726)
T PRK08620 2 MKSLVLAEKPSVGRDIARVLKCNKKGNGYLEGNKYIVTWALGHLVTLADPESYDKKYKEWRLEDLPMLPKR---MKLVVI 78 (726)
T ss_pred CCCEEEECCHHHHHHHHHHHCCCCCCCCCEECCCEEEEEECCCCCCCCCHHHCCHHHCCCCCCCCCCCCHH---CCEEEC
T ss_conf 98289983879999999985756667774668898999826666438990235612045651347767332---204454
Q ss_pred CCHHHHHHHHHHHH--HHCCEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCHHHHHHHHHCCC--CCC
Q ss_conf 65489999999998--70998999469970257999999999755125788716999980379899999986226--469
Q gi|254780306|r 56 PSSQKHLQNIIHAV--KSSTILILATDPDREGEAISWHVLDVLRQKNLIEKTKIQRVSFNAITKQVVLNAMKSPR--DIN 131 (837)
Q Consensus 56 ~~~kk~~~~i~~~~--k~a~~iilAtD~DREGE~Iawhi~e~l~~~~~~~~~~v~R~~f~eiT~~aI~~A~~n~r--~~d 131 (837)
T Consensus 79 ~~~~kq~~~ik~ll~~k~a~~IiiAtDpDREGE~Ia~~il~~~~-----~~kpikRl~fseiT~~aI~~A~~nlkp~~~~ 153 (726)
T PRK08620 79 KKTSKQFNAVKSQMLRKDVKEIIIATDAGREGELVARWIIDKAG-----VKKPIKRLWISSVTDKAIKDGFKNLKPGKAY 153 (726)
T ss_pred CCHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHC-----CCCCEEEEEEECCCHHHHHHHHHCCCCHHHH
T ss_conf 74278999999998667999899878887334899999999837-----9997489996028999999999748981430
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCEEEEEE
Q ss_conf 89999999999989874011378988641467653422689999999999996413765440012233157996542233
Q gi|254780306|r 132 LDLVNAYLARRALDYLVGFNLSPILWQKLPGARSAGRVQSVALRLICNRENQIESFVSEEYWSLSVLLETPRNDKFTAHL 211 (837)
Q Consensus 132 ~~Lv~A~~aRr~lD~lvG~~lSp~L~rk~~~~lSaGRVQtp~L~lIveRe~eI~~F~p~~y~~i~a~~~~~~~~~f~a~l 211 (837)
T Consensus 154 ~~L~~Aa~aRr~~D~lVG~nlSr~lt~k~~~~LSaGRVQTPtL~lIveRE~EI~~F~p~~Yw~i~a~~~---~--~~~~~ 228 (726)
T PRK08620 154 ENLYASAVARSEADWIVGINATRALTTKYNAQLSCGRVQTPTLAMIAQREEEIKNFKPKTYYTIEATTK---G--LKLTW 228 (726)
T ss_pred HHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEC---C--EEEEE
T ss_conf 547899999999999824000499998726766665200226699999899998089964289999964---6--06898
Q ss_pred EEECCEEECCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHCCC
Q ss_conf 10358330331011356667776420015630100002332224685210379999988760888999999998762135
Q gi|254780306|r 212 TDFNGQRIEKKSISNKKEADDLISFVKKATYSVEKIENKPIKRNPWPAFTTSTLQQVASSRLGFSASHTMRIAQKLYEGI 291 (837)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~V~~v~~k~~~~~Pp~Pf~tstLQq~As~~lg~sa~~Tm~iAQ~LYE~~ 291 (837)
T Consensus 229 ~~~~----~~~~~~d~~~a~~i~~~l~~~~~~V~~v~~k~kk~~pP~pf~tstLQq~As~~lg~SakkTm~iAQ~LYE~~ 304 (726)
T PRK08620 229 QDKK----GNSRTFNKEKAEKIVKKLKGKDGKIVEVDKKHKKSYSPGLYDLTELQRDANKRFGYSAKETLNIMQRLYEQH 304 (726)
T ss_pred ECCC----CCCCCCCHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC
T ss_conf 4155----656669999999999996159859999873010048979976799999999871878899999999998658
Q ss_pred CCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCC-------CCCCCCC-CCCCCEEEEECCCCCC
Q ss_conf 5672122455314755444430568999976552001123763111125-------5666887-7765247730234640
Q gi|254780306|r 292 DVNGEIVGLITYMRTDGVHMSPDALEAVRRSITSHYGDHYLPEKPRIYS-------SKSKNAQ-EAHEAIRPNDFDFLPS 363 (837)
Q Consensus 292 ~~~~~~~GlITYpRTDS~~ls~ea~~~~r~~i~~~~g~~~l~~~~r~y~-------~k~k~aQ-eAHeAIrPT~~~~~p~ 363 (837)
T Consensus 305 -------glITYpRTDS~~ls~d~~~~~~~~l~~~~~~~y~~~~~~~~~~~~~~~k~~~~d~kv~dH~AI~PT~~~~~~- 376 (726)
T PRK08620 305 -------KVLTYPRTDSRYISTDIVDTLKERLKACGVGEYKKLANKILKKPIKANKSFVDDSKVSDHHAIIPTEQRVNL- 376 (726)
T ss_pred -------CEEECCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-
T ss_conf -------603216778751788899999999998432135788887502456755444665555677684786667780-
Q ss_pred HHCCCCCHHHHHHHHHHHHHHHHHHHHHHEECCCEEEEEEEECCCEEEEEEEEEEEECCCHHHHHCCCCCC-CCCCHHHC
Q ss_conf 00001999999999999999999852221100100136774079639999987488058856763267776-32100101
Q gi|254780306|r 364 KMKQFLDSDQFQLYNLIWKRSVASQMASAKFERTTVNIIATYNDQIGHLRTTGSLLCFDGFLKVWENQYDQ-EKNSEEDI 442 (837)
Q Consensus 364 ~~~~~L~~de~klY~LI~~R~lasqm~~a~~~~~~v~i~~~~~~~~~~F~asg~~i~~~G~~~vy~~~~~~-~~~~~~~~ 442 (837)
T Consensus 377 ---~~Ls~de~klY~LI~~RflAs~m~~a~~~~t~v~~~~~~----~~F~a~G~~i~~~Gw~~vy~~~~~~~~~~~~~~~ 449 (726)
T PRK08620 377 ---SALSDKERKIYDLVVKRFLAVLMPPFEYEQTTVKAEVGG----ETFIAKGKVVKSLGWKEVYDNFEDDDDEDESKEQ 449 (726)
T ss_pred ---CCCCHHHHHHHHHHHHHHHHHHCCHHEEEEEEEEEEECC----EEEEEEEEEEEECCHHHHHCCCCCCCCCCCCCCC
T ss_conf ---008999999999999999997165125888999999789----1899998999556678762665565543210014
Q ss_pred CCCCCCCCCCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHC-------------------CCCCCCCHHHHHHHHHHCCE
Q ss_conf 48864568821100110111234643101789987433210-------------------25665515789999973220
Q gi|254780306|r 443 LLPYISANEQLIATETNASQHFTEPPPRYSESSLIKKMEEI-------------------GIGRPSTYATILETLYKRKY 503 (837)
Q Consensus 443 ~LP~l~~g~~~~~~~~~~~~~~TkPP~rytEasLik~mE~~-------------------GIGrPSTyA~II~~L~~R~Y 503 (837)
T Consensus 450 ~LP~l~~Ge~l~~~~~~~~~~~TkPP~ryTEasLi~~ME~~~k~v~~~d~~l~k~l~e~~GIGtpATrA~IIe~L~~r~Y 529 (726)
T PRK08620 450 LLPKLSKGDTLKVKKINITEGETKPPARFNEGTLLSAMENPQKYMQLKDKKLAKTLGETGGLGTVATRADIIEKLFNSFL 529 (726)
T ss_pred CCCCCCCCCEEEEEEEEECCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHCEE
T ss_conf 69978889976641323222206897998989999999735535664358999987640476764417778887754105
Q ss_pred EECCCCCEEECCHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 22147712220114200002233665568988999999999998626013478999986767665576677556667765
Q gi|254780306|r 504 VIAEKRKILPQNTGRIVTAFLENFFSQYVEYDFTADLEEKLDEISTGKLNWKEVLHEFWEEFIEKIDSIKKLRISNVLDI 583 (837)
Q Consensus 504 V~~~~~~l~pT~~G~~v~~~L~~~f~~~~~~~fTa~~E~~ld~Ia~G~~~~~~~L~~Fy~~f~~~i~~~~~~~~~~v~d~ 583 (837)
T Consensus 530 v~~~~k~l~pT~~G~~l~~~l~~---~l~~p~~TA~~E~~Ld~I~~Gk~~~~~fi~~~~~~~~~~v~~~k~~~~------ 600 (726)
T PRK08620 530 IEKRGKDIKITSKGKQLLELVPE---ELKSPLLTAEWEQKLELIAKGKLKKKTFINEMKNYTKKVVNEIKNSDK------ 600 (726)
T ss_pred EEEECCEEEECHHHHHHHHHHHH---HCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCC------
T ss_conf 87109988177689999998798---648945789999999999869998999999999999999999974014------
Q ss_pred HHHHHHHCCCCCCCCCCCCEECCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 56766410245555676611433467773136871577611123434323332100122100001234420146899996
Q gi|254780306|r 584 LNDTLSSVIFPPKENNEDSRTCPECHTHSLSLKLSSKYGAFVGCTNYPECKYTRQLTSNPQDIPEMKESVLLGNDLETKE 663 (837)
Q Consensus 584 l~~~~~~~~~~~~~~~~~~~~Cp~C~~g~L~~k~~gK~G~FigCSnyPeCk~t~~l~~~~~~~~~~~~~~~LG~dP~~G~ 663 (837)
T Consensus 601 ----------~~~~~~~t~~~Cp~Cg~~m~~--~~gr~Gkf~~C~~-peC~~~k~~~~~~-----------~~~Cp~C~~ 656 (726)
T PRK08620 601 ----------KYKHDNLTGTKCPDCGKFMLE--VKGKNGKMLVCQD-RECGHRKNVSRKT-----------NARCPNCKK 656 (726)
T ss_pred ----------CCCCCCCCCCCCCCCCCCCEE--EECCCCCEEECCC-CCCCCCCCCHHHC-----------CCCCCCCCC
T ss_conf ----------424577789856426832116--8589875574689-9899977710212-----------894999998
Q ss_pred EEEEEECCCCCEEEECC
Q ss_conf 69998269742277348
Q gi|254780306|r 664 SVTLRSGRFGLYVQRGD 680 (837)
Q Consensus 664 ~I~lk~GryGpYvq~Ge 680 (837)
T Consensus 657 ~~~~~~~~~g~~~~c~~ 673 (726)
T PRK08620 657 KLELRGEGEGQIFVCVC 673 (726)
T ss_pred EEEEEECCCCCEEEECC
T ss_conf 56898567787899738