HHsearch alignment for GI: 254780306 and conserved domain: PRK09031
>PRK09031 DNA topoisomerase III; Provisional.
Probab=100.00 E-value=0 Score=1156.27 Aligned_cols=550 Identities=25% Similarity=0.396 Sum_probs=478.2
Q ss_pred CCEEEECCHHHHHHHHHHH-------------CCCCEEEEEECCCEECCCC-------------CCCCCCCCCCCEEEEE
Q ss_conf 9189977904787788750-------------8998999942511007865-------------5786766674406887
Q gi|254780306|r 1 MNVIIVESPAKAKTISKYL-------------GSNYKVLSSFGHIRDLPAK-------------KGSVLPEKEFEMIWNI 54 (837)
Q Consensus 1 M~LvIvEsP~kak~I~~~L-------------g~~y~V~as~GHirdLp~~-------------~~~v~~~~~f~p~y~v 54 (837)
T Consensus 1 M~LiIAEKPs~Ar~IA~~L~~~~~k~~g~~~~g~g~~Vtw~~GHll~l~~P~~y~~~~k~W~~~~LPiiP~~-~--~~~~ 77 (649)
T PRK09031 1 MRLFIAEKPSLGRAIADVLPKPHKKGDGFIECGNGDVVTWCIGHLLEQAEPDAYDPRYKRWNLEHLPIVPEK-W--QLQP 77 (649)
T ss_pred CEEEEECCHHHHHHHHHHHCCCCCCCCCCEEECCCCEEEEECCCCCCCCCCCCCCHHHCCCCCCCCCCCCHH-C--EEEE
T ss_conf 979998486999999997276650577718847996999955644216771103654256760227857600-1--2224
Q ss_pred CCCHHHHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCHHHHHHHHHCCCCCC--H
Q ss_conf 76548999999999870998999469970257999999999755125788716999980379899999986226469--8
Q gi|254780306|r 55 DPSSQKHLQNIIHAVKSSTILILATDPDREGEAISWHVLDVLRQKNLIEKTKIQRVSFNAITKQVVLNAMKSPRDIN--L 132 (837)
Q Consensus 55 ~~~~kk~~~~i~~~~k~a~~iilAtD~DREGE~Iawhi~e~l~~~~~~~~~~v~R~~f~eiT~~aI~~A~~n~r~~d--~ 132 (837)
T Consensus 78 ~~~~~~ql~~ik~L~k~ad~ii~AtD~DREGElI~~eil~~~~~~~-~~~~~v~R~~~s~lt~~aI~~A~~~lr~~~~~~ 156 (649)
T PRK09031 78 RPSVRKQLTVIKKLLKQADELVHAGDPDREGQLLVDEVLDYLGLSA-EKRQQVQRCLISDLNPQAVKRALDRLRSNREFI 156 (649)
T ss_pred CCCHHHHHHHHHHHHHCCCEEEECCCCCCCHHHHHHHHHHHHCCCC-CCCCCEEEEEECCCCHHHHHHHHHCCCCCHHHH
T ss_conf 6028999999999996299999886887121699999999857342-367865899952588999999997158716678
Q ss_pred HHHHHHHHHHHHHHHHHHHHCH---HHHHHCC--CCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCEE
Q ss_conf 9999999999989874011378---9886414--6765342268999999999999641376544001223315799654
Q gi|254780306|r 133 DLVNAYLARRALDYLVGFNLSP---ILWQKLP--GARSAGRVQSVALRLICNRENQIESFVSEEYWSLSVLLETPRNDKF 207 (837)
Q Consensus 133 ~Lv~A~~aRr~lD~lvG~~lSp---~L~rk~~--~~lSaGRVQtp~L~lIveRe~eI~~F~p~~y~~i~a~~~~~~~~~f 207 (837)
T Consensus 157 ~L~~aa~aR~~~DwliG~n~TRa~tl~~r~~g~~~vlS~GRVQTPtL~lVveRe~eI~~F~p~~y~~i~a~~~~~~~~~f 236 (649)
T PRK09031 157 PLSVSALARARADWLYGINMTRAYTILGRKAGYQGVLSVGRVQTPVLGLVVRRDEEIENFVPKDFFEVKAHIVTPADERF 236 (649)
T ss_pred HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCCEE
T ss_conf 88999999999998737003189998765416777732443310367899998999984688744899999964899627
Q ss_pred EEEEEEECCE---EECCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHH
Q ss_conf 2233103583---3033101135666777642001563010000233222468521037999998876088899999999
Q gi|254780306|r 208 TAHLTDFNGQ---RIEKKSISNKKEADDLISFVKKATYSVEKIENKPIKRNPWPAFTTSTLQQVASSRLGFSASHTMRIA 284 (837)
Q Consensus 208 ~a~l~~~~~~---~~~~~~~~~~~~a~~~~~~~~~~~~~V~~v~~k~~~~~Pp~Pf~tstLQq~As~~lg~sa~~Tm~iA 284 (837)
T Consensus 237 ~a~w~~~~~~~~~~de~~r~~~~~~A~~i~~~i~~~~~~V~~v~~k~~k~~pP~Pf~ls~LQ~~Ask~~g~Sa~~tl~ia 316 (649)
T PRK09031 237 TAKWQPSEACEPYQDEEGRVLHRPLAENVVNRITGQPALVTSYNDKREKQSAPLPYSLSALQIDAAKRFGLSAQQVLDIC 316 (649)
T ss_pred EEEECCCCCCCCCCCHHCCCCCHHHHHHHHHHHHCCCEEEEEEEEEEEECCCCCCCCHHHHHHHHHHHCCCCHHHHHHHH
T ss_conf 99853531133343312023679999999999608983999986556634898997889999999986299999999999
Q ss_pred HHHHCCCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHH--HCCCCCCCCCC---CCCCCCCCCCC--CCCCCEEEEE
Q ss_conf 87621355672122455314755444430568999976552--00112376311---11255666887--7765247730
Q gi|254780306|r 285 QKLYEGIDVNGEIVGLITYMRTDGVHMSPDALEAVRRSITS--HYGDHYLPEKP---RIYSSKSKNAQ--EAHEAIRPND 357 (837)
Q Consensus 285 Q~LYE~~~~~~~~~GlITYpRTDS~~ls~ea~~~~r~~i~~--~~g~~~l~~~~---r~y~~k~k~aQ--eAHeAIrPT~ 357 (837)
T Consensus 317 Q~LYE~~-------~lITYPRTDS~~lp~~~~~~~~~vl~~i~~~~~~~~~~~~~~~~~~k~k~~nd~kv~aH~AIiPT~ 389 (649)
T PRK09031 317 QKLYETH-------KLITYPRSDCRYLPEEHFAGRHAVLNAISVHAPELLPQVEVADPDLRNRAWNDKKVDAHHAIIPTA 389 (649)
T ss_pred HHHHHHC-------CCEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 9999718-------965016767886797999899999999985128664220114642356666776666888977887
Q ss_pred CCCCCCHHCCCCCHHHHHHHHHHHHHHHHHHHHHHEECCCEEEEEEEECCCEEEEEEEEEEEECCCHHHHHCCCCCCCCC
Q ss_conf 23464000001999999999999999999852221100100136774079639999987488058856763267776321
Q gi|254780306|r 358 FDFLPSKMKQFLDSDQFQLYNLIWKRSVASQMASAKFERTTVNIIATYNDQIGHLRTTGSLLCFDGFLKVWENQYDQEKN 437 (837)
Q Consensus 358 ~~~~p~~~~~~L~~de~klY~LI~~R~lasqm~~a~~~~~~v~i~~~~~~~~~~F~asg~~i~~~G~~~vy~~~~~~~~~ 437 (837)
T Consensus 390 ~~~~----~~~Ls~~E~klY~LI~rr~la~~~~~a~~~~t~v~~~~~~~----~F~a~g~~~~~~Gw~~~~~~~~~~--~ 459 (649)
T PRK09031 390 KSSN----VNSLTENEAKVYLLIARQYLMQFYPDAVYRKCVIELDIAGG----KFIAKARFLAEAGWKTLLGKKERD--E 459 (649)
T ss_pred CCCC----HHHCCHHHHHHHHHHHHHHHHHHCCHHEEEEEEEEEEECCC----EEEEEEEEEEECCCHHHCCCCCCC--C
T ss_conf 7789----14489999999999999999984841166238999997897----899987999556607533876665--4
Q ss_pred CHHHCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCHHHHHHHH-----------------HHCCCCCCCCHHHHHHHHHH
Q ss_conf 0010148864568821100110111234643101789987433-----------------21025665515789999973
Q gi|254780306|r 438 SEEDILLPYISANEQLIATETNASQHFTEPPPRYSESSLIKKM-----------------EEIGIGRPSTYATILETLYK 500 (837)
Q Consensus 438 ~~~~~~LP~l~~g~~~~~~~~~~~~~~TkPP~rytEasLik~m-----------------E~~GIGrPSTyA~II~~L~~ 500 (837)
T Consensus 460 ~~~~~~LP~l~~g~~l~~~~~~~~~k~T~PP~ryTEatLl~aM~~~~r~v~d~elkk~lke~~GIGTpATrA~IIe~L~~ 539 (649)
T PRK09031 460 ENDGTPLPVVAKGQELLCEKGEVVEKQTQPPKHFTDATLLSAMTGIARFVQDKELKKILRETDGLGTEATRAGIIELLFK 539 (649)
T ss_pred CCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHH
T ss_conf 10136699888999865300034257578979988799999987333234669999874125798871458999999986
Q ss_pred CCEEECCCCCEEECCHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 22022147712220114200002233665568988999999999998626013478999986767665576677
Q gi|254780306|r 501 RKYVIAEKRKILPQNTGRIVTAFLENFFSQYVEYDFTADLEEKLDEISTGKLNWKEVLHEFWEEFIEKIDSIKK 574 (837)
Q Consensus 501 R~YV~~~~~~l~pT~~G~~v~~~L~~~f~~~~~~~fTa~~E~~ld~Ia~G~~~~~~~L~~Fy~~f~~~i~~~~~ 574 (837)
T Consensus 540 R~Yv~~~gk~l~pT~~G~~Li~~L~~---~~~~p~~TA~wE~~L~~I~~G~~~~~~fm~~~~~~~~~~v~~~~~ 610 (649)
T PRK09031 540 RGFLTKKGKYIHSTDAGRALIHSLPE---MATRPDMTAHWESQLTQISEKQCRYQDFMQPLVGTLYQLIDQAKR 610 (649)
T ss_pred CCCEEECCCEEEECHHHHHHHHHHHH---HCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 78899519889776679999999888---627935699999999999859999999999999999999999860