HHsearch alignment for GI: 254780306 and conserved domain: PRK09137
>PRK09137 DNA topoisomerase I; Validated.
Probab=100.00 E-value=0 Score=1553.64 Aligned_cols=703 Identities=49% Similarity=0.839 Sum_probs=627.9
Q ss_pred CEEEECCHHHHHHHHHHHCCCCEEEEEECCCEECCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHCCEEEECCCC
Q ss_conf 18997790478778875089989999425110078655786766674406887765489999999998709989994699
Q gi|254780306|r 2 NVIIVESPAKAKTISKYLGSNYKVLSSFGHIRDLPAKKGSVLPEKEFEMIWNIDPSSQKHLQNIIHAVKSSTILILATDP 81 (837)
Q Consensus 2 ~LvIvEsP~kak~I~~~Lg~~y~V~as~GHirdLp~~~~~v~~~~~f~p~y~v~~~~kk~~~~i~~~~k~a~~iilAtD~ 81 (837)
T Consensus 3 ~LvIvEsPskAk~I~~~LG~~y~V~as~GHi~dL~~~~~~~d~~~~f~p~y~~~~~~kk~i~~lk~l~k~ad~IilAtDp 82 (761)
T PRK09137 3 NLVIVESPAKAKTIEKYLGNDFKVLASYGHVRDLPSKQGSVDPEDDFKMKYQVIERSKKHIDAIKKAAKDADNLYLATDP 82 (761)
T ss_pred EEEEECCHHHHHHHHHHHCCCCEEEEECCCHHHCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHCCCEEEECCCC
T ss_conf 49998587999999997194989999835343177645785725598444688964789999999998389989989888
Q ss_pred CCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHCC
Q ss_conf 70257999999999755125788716999980379899999986226469899999999999898740113789886414
Q gi|254780306|r 82 DREGEAISWHVLDVLRQKNLIEKTKIQRVSFNAITKQVVLNAMKSPRDINLDLVNAYLARRALDYLVGFNLSPILWQKLP 161 (837)
Q Consensus 82 DREGE~Iawhi~e~l~~~~~~~~~~v~R~~f~eiT~~aI~~A~~n~r~~d~~Lv~A~~aRr~lD~lvG~~lSp~L~rk~~ 161 (837)
T Consensus 83 DREGE~Ia~~i~~~l~~~~~~~~k~v~Ri~f~eiT~~aI~~A~~np~~~~~~Lv~A~~aR~~lD~lvG~nlS~~l~~~~~ 162 (761)
T PRK09137 83 DREGEAISWHLLEVLKSKRLLKDKKVQRVVFHEITKSAVQDAIANPRDISMDLVDAQQARRALDYLVGFNLSPLLWKKIR 162 (761)
T ss_pred CCCHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHC
T ss_conf 80500999999999672335799845999980289999999986756256878999999999999976700498886426
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCEEEEEEEEECCEEECCCCHHHHHHHHHHHHHHCCC-
Q ss_conf 6765342268999999999999641376544001223315799654223310358330331011356667776420015-
Q gi|254780306|r 162 GARSAGRVQSVALRLICNRENQIESFVSEEYWSLSVLLETPRNDKFTAHLTDFNGQRIEKKSISNKKEADDLISFVKKA- 240 (837)
Q Consensus 162 ~~lSaGRVQtp~L~lIveRe~eI~~F~p~~y~~i~a~~~~~~~~~f~a~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~- 240 (837)
T Consensus 163 ~~lSaGRVQTPtL~lIveRE~EI~~F~p~~Yw~i~a~~~~-~~~~f~~~l~~~~~~~~~~~~~~~~~~a~~~~~~l~~~~ 241 (761)
T PRK09137 163 RGLSAGRVQSPALRLICEREIEIEAFEAQEYWTIHADCHK-QKQKFTARLAEFNGEKLEQFDIPNEAQAHELKKALEKDA 241 (761)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEEEEEC-CCCEEEEEEEECCCCCHHHCCCCCHHHHHHHHHHHHCCC
T ss_conf 6776574223889999999999971788405899999704-895489999850771621068789999999999984354
Q ss_pred --CCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCC-HHHHHHHHCCCCCCCCCHHHHH
Q ss_conf --6301000023322246852103799999887608889999999987621355672-1224553147554444305689
Q gi|254780306|r 241 --TYSVEKIENKPIKRNPWPAFTTSTLQQVASSRLGFSASHTMRIAQKLYEGIDVNG-EIVGLITYMRTDGVHMSPDALE 317 (837)
Q Consensus 241 --~~~V~~v~~k~~~~~Pp~Pf~tstLQq~As~~lg~sa~~Tm~iAQ~LYE~~~~~~-~~~GlITYpRTDS~~ls~ea~~ 317 (837)
T Consensus 242 ~~~~~V~~v~~k~~k~~Pp~Pf~tstLQq~As~~lg~sa~~Tm~iAQ~LYE~~~~~~~~~~GlITYpRTDS~~ls~~~~~ 321 (761)
T PRK09137 242 NGFLTVDKITKKKRKRNPAPPFITSTLQQEAARKLGFTAKKTMSTAQKLYEGIDLGNEGAVGLITYMRTDSVNLANEALQ 321 (761)
T ss_pred CCCEEEEEEEEEEEECCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCCCHHHHH
T ss_conf 78639999885144058999987799999999873999999999999986354556666411588505676656899999
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCHHCCCCCHHHHHHHHHHHHHHHHHHHHHHEECCC
Q ss_conf 99976552001123763111125566688777652477302346400000199999999999999999985222110010
Q gi|254780306|r 318 AVRRSITSHYGDHYLPEKPRIYSSKSKNAQEAHEAIRPNDFDFLPSKMKQFLDSDQFQLYNLIWKRSVASQMASAKFERT 397 (837)
Q Consensus 318 ~~r~~i~~~~g~~~l~~~~r~y~~k~k~aQeAHeAIrPT~~~~~p~~~~~~L~~de~klY~LI~~R~lasqm~~a~~~~~ 397 (837)
T Consensus 322 ~~~~~i~~~~~~~~~~~~~~~~~~k~~~~q~AHeAI~PT~~~~~p~~~~~~Ls~de~klY~LI~~RflAs~m~~a~~~~t 401 (761)
T PRK09137 322 EIRNYIEAKYGKEYLPAKPRVYKTKSKNAQEAHEAIRPTSANRTPESVKKFLTSDQFKLYSLIWKRTVACQMAEATLDQT 401 (761)
T ss_pred HHHHHHHHHHCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 99999987402222210675254567898877089288687659888762078778999999999999973850158999
Q ss_pred EEEEEEEECCCEEEEEEEEEEEECCCHHHHHCCCCCCC-CCCHHHCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCHHHH
Q ss_conf 01367740796399999874880588567632677763-21001014886456882110011011123464310178998
Q gi|254780306|r 398 TVNIIATYNDQIGHLRTTGSLLCFDGFLKVWENQYDQE-KNSEEDILLPYISANEQLIATETNASQHFTEPPPRYSESSL 476 (837)
Q Consensus 398 ~v~i~~~~~~~~~~F~asg~~i~~~G~~~vy~~~~~~~-~~~~~~~~LP~l~~g~~~~~~~~~~~~~~TkPP~rytEasL 476 (837)
T Consensus 402 ~v~i~~~~~---~~F~a~g~~~~~~Gw~~vy~~~~~~~~~~~~~~~~lP~l~~g~~~~~~~~~~~~~~TkPP~ryTEasL 478 (761)
T PRK09137 402 SVDIIAGNG---HRFRATGTVIVFAGFLKVYEEGKDDDKEEEEDEKTLPPLEEGEKLKLNDLITEQHFTEPPPRYTEASL 478 (761)
T ss_pred EEEEEECCC---EEEEEEEEEEEECCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCHHHH
T ss_conf 999982797---19999879999867798740225655333322352887789998777688851457589998899999
Q ss_pred HHHHHHCCCCCCCCHHHHHHHHHHCCEEECCCCCEEECCHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHH
Q ss_conf 74332102566551578999997322022147712220114200002233665568988999999999998626013478
Q gi|254780306|r 477 IKKMEEIGIGRPSTYATILETLYKRKYVIAEKRKILPQNTGRIVTAFLENFFSQYVEYDFTADLEEKLDEISTGKLNWKE 556 (837)
Q Consensus 477 ik~mE~~GIGrPSTyA~II~~L~~R~YV~~~~~~l~pT~~G~~v~~~L~~~f~~~~~~~fTa~~E~~ld~Ia~G~~~~~~ 556 (837)
T Consensus 479 Ik~ME~~GIGtpsT~A~II~~L~~R~Yv~~~~k~l~pT~lG~~v~~~L~~~f~~iv~~~~Ta~mE~~Ld~Ia~G~~~~~~ 558 (761)
T PRK09137 479 VKALEEYGIGRPSTYASIISTLQQREYVRLDKKRFIPTDVGRIVNKFLTEHFTKYVDYNFTAGLEDELDEIARGEKDWIP 558 (761)
T ss_pred HHHHHHCCCCCCCCHHHHHHHHHHCCCEEEECCEEEECHHHHHHHHHHHHHCHHHCCHHHHHHHHHHHHHHHCCCCCHHH
T ss_conf 99997379996236899999897389699659988564679999999988552315966899999988999769960899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEECCCCCCCCEEEEEECCCCCCCCCCCCCCCCCC
Q ss_conf 99998676766557667755666776556766410245555676611433467773136871577611123434323332
Q gi|254780306|r 557 VLHEFWEEFIEKIDSIKKLRISNVLDILNDTLSSVIFPPKENNEDSRTCPECHTHSLSLKLSSKYGAFVGCTNYPECKYT 636 (837)
Q Consensus 557 ~L~~Fy~~f~~~i~~~~~~~~~~v~d~l~~~~~~~~~~~~~~~~~~~~Cp~C~~g~L~~k~~gK~G~FigCSnyPeCk~t 636 (837)
T Consensus 559 vl~~f~~~f~~~~~~~~~~~~~------------~~~---~~~~~~~~Cp~Cg~~-l~~r-~g~~G~F~~Cs~yP~Ck~t 621 (761)
T PRK09137 559 VLEEFWHPFIELIKEKEEDVSR------------KDV---TTEELDEKCPECGKP-LSIK-LGKRGRFIACTGYPECKYT 621 (761)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH------------CCC---CCCCCCCCCCCCCCE-EEEE-ECCCCCEEECCCCCCCCCC
T ss_conf 9999999999999999988754------------236---544457878889982-3899-5587765766798766675
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEECCCCCCCCCCCCCCCCHHHCCHHHHHHHHHCCHHH-CC
Q ss_conf 10012210000123442014689999669998269742277348877761337899884254899999986152551-57
Q gi|254780306|r 637 RQLTSNPQDIPEMKESVLLGNDLETKESVTLRSGRFGLYVQRGDGKDAKRCSLPKTWKSDSVDYDKAMSLLSLPREI-GI 715 (837)
Q Consensus 637 ~~l~~~~~~~~~~~~~~~LG~dP~~G~~I~lk~GryGpYvq~Ge~~kpkr~si~k~~~~~~itle~Al~LLsLPr~l-G~ 715 (837)
T Consensus 622 ~~~~~~~~~~~~~-~~~~~~~Cp~Cg~~mv~k~gr~G~f~~Cs~yP~Ck~~~--------~~~---------k~~~~~~~ 683 (761)
T PRK09137 622 RNLDEDEEEAAEE-EVVEGRKCPKCGSPLHIKQGRYGKFIGCSNYPECKHME--------PLE---------KPKDTGVT 683 (761)
T ss_pred CCCCCCCCCCCCC-CCCCCCCCCCCCCCEEEEECCCCCEEECCCCCCCCCCC--------CCC---------CCCCCCCC
T ss_conf 7677655555566-65578869889971278614676345337998766777--------666---------76667761
Q ss_pred CCCCCC-EEEEEECCCCC-EEEECCEECCCC
Q ss_conf 778987-49991158765-261678111248
Q gi|254780306|r 716 HPETQK-NIIAGTGKYGY-YLNHDGAYTKLE 744 (837)
Q Consensus 716 ~pe~g~-~I~~~~GryGp-Yi~~~~~~~sl~ 744 (837)
T Consensus 684 CP~C~~g~~~~r~~k~Gk~f~gC~~-yp~C~ 713 (761)
T PRK09137 684 CPKCKKGELVEKKSRYGKIFYSCAR-YPKCK 713 (761)
T ss_pred CCCCCCCCEEEEECCCCCCCCCCCC-CCCCC
T ss_conf 9899998777751799994027898-89998