HHsearch alignment for GI: 254780306 and conserved domain: TIGR00615
>TIGR00615 recR recombination protein RecR; InterPro: IPR000093 The bacterial protein recR seems to play a role in a recombinational process of DNA repair . It may act with recF and recO. RecR is a protein of about 200 amino acid residues. This protein contains a putative C4-type zinc finger in the N-terminal section.; GO: 0006281 DNA repair, 0006310 DNA recombination.
Probab=96.21 E-value=0.029 Score=36.04 Aligned_cols=102 Identities=29% Similarity=0.489 Sum_probs=63.9
Q ss_pred EEEECCHHHHHHHH---HHHCCCCEEEEEECCCEECCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHH----HHH--HCC
Q ss_conf 89977904787788---750899899994251100786557867666744068877654899999999----987--099
Q gi|254780306|r 3 VIIVESPAKAKTIS---KYLGSNYKVLSSFGHIRDLPAKKGSVLPEKEFEMIWNIDPSSQKHLQNIIH----AVK--SST 73 (837)
Q Consensus 3 LvIvEsP~kak~I~---~~Lg~~y~V~as~GHirdLp~~~~~v~~~~~f~p~y~v~~~~kk~~~~i~~----~~k--~a~ 73 (837)
T Consensus 85 iCvV~~p~Dv~a~E~~~~f~G~-YhVL~--G~is--Pl--~Gigp~~-------------~~i~~L~~riGeRl~~~~~~ 144 (205)
T TIGR00615 85 ICVVEDPKDVFALEKTKEFRGR-YHVLG--GLIS--PL--DGIGPED-------------LKIAALLKRIGERLQEESVK 144 (205)
T ss_pred EEEECCHHHHHHHHHHHHHCCC-EEEEC--CEEC--CC--CCCCCCC-------------CCHHHHHHHHHCCCCCCCCC
T ss_conf 6874472679998765421660-14315--6417--64--5768322-------------14688998860000005797
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCHHHHHHHHHCCCCCCHHHHHHH
Q ss_conf 89994699702579999999997551257887169999803798999999862264698999999
Q gi|254780306|r 74 ILILATDPDREGEAISWHVLDVLRQKNLIEKTKIQRVSFNAITKQVVLNAMKSPRDINLDLVNAY 138 (837)
Q Consensus 74 ~iilAtD~DREGE~Iawhi~e~l~~~~~~~~~~v~R~~f~eiT~~aI~~A~~n~r~~d~~Lv~A~ 138 (837)
T Consensus 145 EVIlA~nPt~EGeaTa~Yi~~~l~~~f--P~~~~tRi------------A~G~PvGg~lE~~D~~ 195 (205)
T TIGR00615 145 EVILATNPTVEGEATALYIARLLRPLF--PGVKVTRI------------ASGLPVGGDLEYVDEV 195 (205)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHCC--CCCEEEEE------------EECCCCCCCHHHHHHH
T ss_conf 788607898413479999999986238--98378655------------4224225515667579