HHsearch alignment for GI: 254780306 and conserved domain: pfam01131

>pfam01131 Topoisom_bac DNA topoisomerase. This subfamily of topoisomerase is divided on the basis that these enzymes preferentially relax negatively supercoiled DNA, from a 5' phospho- tyrosine linkage in the enzyme-DNA covalent intermediate and has high affinity for single stranded DNA.
Probab=93.57  E-value=0.26  Score=28.89  Aligned_cols=57  Identities=18%  Similarity=0.339  Sum_probs=45.3

Q ss_pred             CCCCCCCEEEECCCCCCCCCCCCCHHHHHHHHHH-CCCCCCCCHHHHHHHHHHCCEEEC
Q ss_conf             6882110011011123464310178998743321-025665515789999973220221
Q gi|254780306|r  449 ANEQLIATETNASQHFTEPPPRYSESSLIKKMEE-IGIGRPSTYATILETLYKRKYVIA  506 (837)
Q Consensus       449 ~g~~~~~~~~~~~~~~TkPP~rytEasLik~mE~-~GIGrPSTyA~II~~L~~R~YV~~  506 (837)
T Consensus       101 ~~~~~~v~~v~~~~~~~~pP~pf~ls~Lq~~a~~~~g~s~~~t-m~iaQ~LYE~glITY  158 (403)
T pfam01131       101 KGKTATVKSVEKKEKKEPPPLPFNTSTLQKEASRKLGFSAKKT-MDIAQKLYEKGLITY  158 (403)
T ss_pred             CCCCEEEEEEEEEEEECCCCCCCCHHHHHHHHHHHCCCCHHHH-HHHHHHHHHCCCEEE
T ss_conf             4898599998765775069998577999999987538789999-999999886583453