HHsearch alignment for GI: 254780306 and conserved domain: pfam01131
>pfam01131 Topoisom_bac DNA topoisomerase. This subfamily of topoisomerase is divided on the basis that these enzymes preferentially relax negatively supercoiled DNA, from a 5' phospho- tyrosine linkage in the enzyme-DNA covalent intermediate and has high affinity for single stranded DNA.
Probab=93.57 E-value=0.26 Score=28.89 Aligned_cols=57 Identities=18% Similarity=0.339 Sum_probs=45.3
Q ss_pred CCCCCCCEEEECCCCCCCCCCCCCHHHHHHHHHH-CCCCCCCCHHHHHHHHHHCCEEEC
Q ss_conf 6882110011011123464310178998743321-025665515789999973220221
Q gi|254780306|r 449 ANEQLIATETNASQHFTEPPPRYSESSLIKKMEE-IGIGRPSTYATILETLYKRKYVIA 506 (837)
Q Consensus 449 ~g~~~~~~~~~~~~~~TkPP~rytEasLik~mE~-~GIGrPSTyA~II~~L~~R~YV~~ 506 (837)
T Consensus 101 ~~~~~~v~~v~~~~~~~~pP~pf~ls~Lq~~a~~~~g~s~~~t-m~iaQ~LYE~glITY 158 (403)
T pfam01131 101 KGKTATVKSVEKKEKKEPPPLPFNTSTLQKEASRKLGFSAKKT-MDIAQKLYEKGLITY 158 (403)
T ss_pred CCCCEEEEEEEEEEEECCCCCCCCHHHHHHHHHHHCCCCHHHH-HHHHHHHHHCCCEEE
T ss_conf 4898599998765775069998577999999987538789999-999999886583453