HHsearch alignment for GI: 254780306 and conserved domain: smart00436

>smart00436 TOP1Bc Bacterial DNA topoisomeraes I ATP-binding domain. Extension of TOPRIM in Bacterial DNA topoisomeraes I and III, Eukaryotic DNA topoisomeraes III, reverse gyrase beta subunit

Probab=99.96  E-value=6.4e-29  Score=236.14  Aligned_cols=88  Identities=52%  Similarity=0.834  Sum_probs=85.0

Q ss_pred             EEEEEEECCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHCCC-CCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             69999803798999999862264698999999999998987401137898864146-76534226899999999999964
Q gi|254780306|r  107 IQRVSFNAITKQVVLNAMKSPRDINLDLVNAYLARRALDYLVGFNLSPILWQKLPG-ARSAGRVQSVALRLICNRENQIE  185 (837)
Q Consensus       107 v~R~~f~eiT~~aI~~A~~n~r~~d~~Lv~A~~aRr~lD~lvG~~lSp~L~rk~~~-~lSaGRVQtp~L~lIveRe~eI~  185 (837)
T Consensus         1 VkR~~~~~iT~~~I~~A~~n~~~~~~~l~~a~~aR~~~D~lvG~n~sr~~t~~~~~~~lS~GRVQtP~L~liv~Re~ei~   80 (89)
T smart00436        1 IKRIEFSEITKKAIREALKNPREIDENLVNAQLARRILDRLIGFNLSRLLTKKLRKGVLSAGRVQTPTLGLIVEREREIK   80 (89)
T ss_pred             CEEEEEECCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf             95888707899999999977572678699999999999999676215999998477898765506779999999899998


Q ss_pred             HCCCCCCEE
Q ss_conf             137654400
Q gi|254780306|r  186 SFVSEEYWS  194 (837)
Q Consensus       186 ~F~p~~y~~  194 (837)
T Consensus        81 ~F~p~~y~~   89 (89)
T smart00436       81 NFVPKPYWE   89 (89)
T ss_pred             CCCCCCCCC
T ss_conf             189976369