HHsearch alignment for GI: 254780306 and conserved domain: smart00437
>smart00437 TOP1Ac Bacterial DNA topoisomerase I DNA-binding domain. Bacterial DNA topoisomerase I and III, Eukaryotic DNA topoisomeraes III, reverse gyrase alpha subunit
Probab=100.00 E-value=0 Score=549.15 Aligned_cols=255 Identities=49% Similarity=0.718 Sum_probs=226.0
Q ss_pred ECCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHC
Q ss_conf 02332224685210379999988760888999999998762135567212245531475544443056899997655200
Q gi|254780306|r 248 ENKPIKRNPWPAFTTSTLQQVASSRLGFSASHTMRIAQKLYEGIDVNGEIVGLITYMRTDGVHMSPDALEAVRRSITSHY 327 (837)
Q Consensus 248 ~~k~~~~~Pp~Pf~tstLQq~As~~lg~sa~~Tm~iAQ~LYE~~~~~~~~~GlITYpRTDS~~ls~ea~~~~r~~i~~~~ 327 (837)
T Consensus 1 e~k~~~~~PP~pf~ls~Lq~~as~~~g~sa~~tl~iaQ~LYe--------~g~ITYpRTds~~l~~~~~~~~~~~i~~~~ 72 (259)
T smart00437 1 EEKEKKKNPPPPFTTSTLQQEASRKLGFSAKKTMQIAQKLYE--------KGLITYPRTDSTRLSEEAVLEARNYISKHY 72 (259)
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHH--------CCCEEECCCCCCCCCHHHHHHHHHHHHHHC
T ss_conf 998635789799778999999998669999999999999986--------785533476874639999999999999863
Q ss_pred CCCCCCCC----CCCCCCCCCCCCCCCCCEEEEECCCCCCHHCCCCCHHHHHHHHHHHHHHHHHHHHHHEECCCEEEEEE
Q ss_conf 11237631----11125566688777652477302346400000199999999999999999985222110010013677
Q gi|254780306|r 328 GDHYLPEK----PRIYSSKSKNAQEAHEAIRPNDFDFLPSKMKQFLDSDQFQLYNLIWKRSVASQMASAKFERTTVNIIA 403 (837)
Q Consensus 328 g~~~l~~~----~r~y~~k~k~aQeAHeAIrPT~~~~~p~~~~~~L~~de~klY~LI~~R~lasqm~~a~~~~~~v~i~~ 403 (837)
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~aH~AI~PT~~~~~~~~-~~~l~~~e~~lY~LI~~r~las~~~~~~~~~t~v~~~~ 151 (259)
T smart00437 73 GKEYLPLAVSLLKPRKPRWGKKEQGAHEAIRPTKPIPTPEL-EKELSEDEKKLYELIWRRFLASQMPDAKYEETKVIIKI 151 (259)
T ss_pred CHHHHHHHHHHCCCCCCCCCCCCCCCCCCEECCCCCCCHHH-HHHCCHHHHHHHHHHHHHHHHHHCCHHEEEEEEEEEEE
T ss_conf 52100255553257878889998789889873667777465-51099999999999999999985753327899999998
Q ss_pred EECCCEEEEEEEEEEEECCCHHHHHCCCCCCCCCCHHHCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHC
Q ss_conf 40796399999874880588567632677763210010148864568821100110111234643101789987433210
Q gi|254780306|r 404 TYNDQIGHLRTTGSLLCFDGFLKVWENQYDQEKNSEEDILLPYISANEQLIATETNASQHFTEPPPRYSESSLIKKMEEI 483 (837)
Q Consensus 404 ~~~~~~~~F~asg~~i~~~G~~~vy~~~~~~~~~~~~~~~LP~l~~g~~~~~~~~~~~~~~TkPP~rytEasLik~mE~~ 483 (837)
T Consensus 152 ~~----~~F~~~g~~~~~~Gw~~v~~~~~~-----~~~~~lp~l~~g~~~~~~~~~~~~~~TkPP~~yte~tLi~~Me~~ 222 (259)
T smart00437 152 GG----EKFKAKGKTLLFDGWLKVYPEEKK-----EEEIELPTLKKGDELKVEEVEVEEKKTKPPARYTEASLIKLMEKR 222 (259)
T ss_pred CC----EEEEEEEEEEEECCHHHEECCCCC-----CCCCCCCCCCCCCEEEEEEEEEEEEECCCCCCCCHHHHHHHHHCC
T ss_conf 99----899999999986873740335656-----531328767779889998888765433899887999999987508
Q ss_pred CCCCCCCHHHHHHHHHHCCEEECCCCCEEECCHHHHH
Q ss_conf 2566551578999997322022147712220114200
Q gi|254780306|r 484 GIGRPSTYATILETLYKRKYVIAEKRKILPQNTGRIV 520 (837)
Q Consensus 484 GIGrPSTyA~II~~L~~R~YV~~~~~~l~pT~~G~~v 520 (837)
T Consensus 223 GIGtpATra~iI~~L~~R~Yi~~~~k~l~pT~~G~~l 259 (259)
T smart00437 223 GIGRPSTYAEIIETLLDRGYVTKEKKKLIPTELGIAV 259 (259)
T ss_pred CCCCCCCHHHHHHHHHHCCCEEEECCEEEECCCEECC
T ss_conf 9985025999999897589699459999554363319