PSIBLAST alignment of GI: 254780306 and protein with PDB id: 1i7d

>gi|14719499|pdb|1I7D|A Chain A, Noncovalent Complex Of E.Coli Dna Topoisomerase Iii With An 8-Base Single-Stranded Dna Oligonucleotide Length = 659
 Score =  265 bits (678), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 136/649 (20%), Positives = 253/649 (38%), Gaps = 72/649 (11%)

Query: 1   MNVIIVESPAKAKTISKYL------GSNYK-------VLSSFGHIRDLPAKK-------- 39
           M + I E P+ A+ I+  L      G  +        V    GH+ +             
Sbjct: 1   MRLFIAEKPSLARAIADVLPKPHRKGDGFIECGNGQVVTWCIGHLLEQAQPDAYDSRYAR 60

Query: 40  -----GSVLPEKEFEMIWNIDPSSQKHLQNIIHAVKSSTILILATDPDREGEAISWHVLD 94
                  ++PEK         PS  K L  I   +  ++ ++ A DPDREG+ +   VLD
Sbjct: 61  WNLADLPIVPEKW---QLQPRPSVTKQLNVIKRFLHEASEIVHAGDPDREGQLLVDEVLD 117

Query: 95  VLRQKNLIEKTKIQRVSFNAITKQVVLNAMKSPRDINL--DLVNAYLARRALDYLVGFNL 152
            L+     ++ ++QR   N +  Q V  A+   R  +    L  + LAR   D+L G N+
Sbjct: 118 YLQLA-PEKRQQVQRCLINDLNPQAVERAIDRLRSNSEFVPLCVSALARARADWLYGINM 176

Query: 153 SP---ILWQK--LPGARSAGRVQSVALRLICNRENQIESFVSEEYWSLSVLLETPRNDKF 207
           +    IL +     G  S GRVQ+  L L+  R+ +IE+FV+++++ +   + TP +++F
Sbjct: 177 TRAYTILGRNAGYQGVLSVGRVQTPVLGLVVRRDEEIENFVAKDFFEVKAHIVTPADERF 236

Query: 208 TAHLT---DFNGQRIEKKSISNKKEADDLISFVKKATYSVEKIENKPIKRNPWPAFTTST 264
           TA           + E+  + ++  A+ +++ +      V    +K    +    F+ S 
Sbjct: 237 TAIWQPSEACEPYQDEEGRLLHRPLAEHVVNRISGQPAIVTSYNDKRESESAPLPFSLSA 296

Query: 265 LQQVASSRLGFSASHTMRIAQKLYEGIDVNGEIVGLITYMRTDGVHMSPDALEAVRRSIT 324
           LQ  A+ R G SA + + I QKLYE   +         Y+  +        + A+     
Sbjct: 297 LQIEAAKRFGLSAQNVLDICQKLYETHKLITFPRSDCRYLPEEHFAGRHAVMNAISVHAP 356

Query: 325 SHYGDHYLPEKPRIYSSKSKNAQEAHEAIRPNDFDFLPSKMKQFLDSDQFQLYNLIWKRS 384
                  +    R      K   +AH AI P             L  ++ ++YNLI ++ 
Sbjct: 357 DLLPQPVVDPDIRNRCWDDK-KVDAHHAIIPTA-----RSSAINLTENEAKVYNLIARQY 410

Query: 385 VASQMASAKFERTTVNIIATYNDQIGHLRTTGSLLCFDGFLKVWENQYDQEKNSEEDILL 444
           +      A F +  + +        G        L   G+  +      +     +   L
Sbjct: 411 LMQFCPDAVFRKCVIELDIA----KGKFVAKARFLAEAGWRTLL--GSKERDEENDGTPL 464

Query: 445 PYISANEQLIATETNASQHFTEPPPRYSESSLIKKM-----------------EEIGIGR 487
           P ++  ++L+  +    +  T+PP  +++++L+  M                    G+G 
Sbjct: 465 PVVAKGDELLCEKGEVVERQTQPPRHFTDATLLSAMTGIARFVQDKDLKKILRATDGLGT 524

Query: 488 PSTYATILETLYKRKYVIAEKRKILPQNTGRIVTAFLENFFSQYVEYDFTADLEEKLDEI 547
            +T A I+E L+KR ++  + R I   + G+ +   L    ++    D TA  E  L +I
Sbjct: 525 EATRAGIIELLFKRGFLTKKGRYIHSTDAGKALFHSLPEMATR---PDMTAHWESVLTQI 581

Query: 548 STGKLNWKEVLHEFWEEFIEKIDSIKKLRISNVLDILNDTLSSVIFPPK 596
           S  +  +++ +        + ID  K+  +     I+           K
Sbjct: 582 SEKQCRYQDFMQPLVGTLYQLIDQAKRTPVRQFRGIVAPGSGGSADKKK 630