PSIBLAST alignment of GI: 254780306 and protein with PDB id: 1mw8

>gi|38492440|pdb|1MW8|X Chain X, Crystal Structure Of A Complex Between H365r Mutant Of 67 Kda N-Terminal Fragment Of E. Coli Dna Topoisomerase I And 5'-Acttcgggatg-3' Length = 592
>gi|38492442|pdb|1MW9|X Chain X, Crystal Structure Of H365r Mutant Of 67 Kda N-Terminal Fragment Of E. Coli Dna Topoisomerase I Length = 592
 Score =  453 bits (1166), Expect = e-125,   Method: Composition-based stats.
 Identities = 241/605 (39%), Positives = 348/605 (57%), Gaps = 54/605 (8%)

Query: 3   VIIVESPAKAKTISKYLGSNYKVLSSFGHIRDLPAK------------------------ 38
           ++IVESPAKAKTI+KYLGS+Y V SS GHIRDLP                          
Sbjct: 5   LVIVESPAKAKTINKYLGSDYVVKSSVGHIRDLPTSGSAAKKSADSTSTKTAKKPKKDER 64

Query: 39  -----KGSVLPEKEFEMIWNIDPSSQKHLQNIIHAVKSSTILILATDPDREGEAISWHVL 93
                +  V P   +E  + + P  +K +  +    + +  + LATD DREGEAI+WH+ 
Sbjct: 65  GALVNRMGVDPWHNWEAHYEVLPGKEKVVSELKQLAEKADHIYLATDLDREGEAIAWHLR 124

Query: 94  DVLRQKNLIEKTKIQRVSFNAITKQVVLNAMKSPRDINLDLVNAYLARRALDYLVGFNLS 153
           +V+      +  +  RV FN ITK  +  A   P ++N+D VNA  ARR +D +VG+ +S
Sbjct: 125 EVIG----GDDARYSRVVFNEITKNAIRQAFNKPGELNIDRVNAQQARRFMDRVVGYMVS 180

Query: 154 PILWQKLPGARSAGRVQSVALRLICNRENQIESFVSEEYWSLSVLLETPRNDKFTAHLTD 213
           P+LW+K+    SAGRVQSVA+RL+  RE +I++FV EE+W +     TP  +     +T 
Sbjct: 181 PLLWKKIARGLSAGRVQSVAVRLVVEREREIKAFVPEEFWEVDASTTTPSGEALALQVTH 240

Query: 214 FNGQRIEKKSISNKKEADDLISFVKKATYSVEKIENKPIKRNPWPAFTTSTLQQVASSRL 273
            N +        NK++    +S ++KA YSV + E+KP    P   F TSTLQQ AS+RL
Sbjct: 241 QNDKPFRP---VNKEQTQAAVSLLEKARYSVLEREDKPTTSKPGAPFITSTLQQAASTRL 297

Query: 274 GFSASHTMRIAQKLYEGIDVNGEIVGLITYMRTDGVHMSPDALEAVRRSITSHYGDHYLP 333
           GF    TM +AQ+LYE         G ITYMRTD  ++S DA+  VR  I+ ++G  YLP
Sbjct: 298 GFGVKKTMMMAQRLYE--------AGYITYMRTDSTNLSQDAVNMVRGYISDNFGKKYLP 349

Query: 334 EKPRIYSSKSKNAQEAHEAIRPNDFDFLPSKMKQFLDSDQFQLYNLIWKRSVASQMASAK 393
           E P  Y+SK  N+QEA EAIRP+D + +   +K  +++D  +LY LIW++ VA QM  AK
Sbjct: 350 ESPNQYASKE-NSQEAREAIRPSDVNVMAESLK-DMEADAQKLYQLIWRQFVACQMTPAK 407

Query: 394 FERTTVNIIATYNDQIGHLRTTGSLLCFDGFLKVWENQYDQEKNSEEDILLPYISANEQL 453
           ++ TT+ + A        L+  G +L FDG+ KV           +ED +LP ++  + L
Sbjct: 408 YDSTTLTVGA----GDFRLKARGRILRFDGWTKVMPALRK----GDEDRILPAVNKGDAL 459

Query: 454 IATETNASQHFTEPPPRYSESSLIKKMEEIGIGRPSTYATILETLYKRKYVIAEKRKILP 513
              E   +QHFT+PP R+SE+SL+K++E+ GIGRPSTYA+I+ T+  R YV  E R+   
Sbjct: 460 TLVELTPAQHFTKPPARFSEASLVKELEKRGIGRPSTYASIISTIQDRGYVRVENRRFYA 519

Query: 514 QNTGRIVTAFLENFFSQYVEYDFTADLEEKLDEISTGKLNWKEVLHEFWEEFIEKIDSIK 573
           +  G IVT  LE  F + + YDFTA +E  LD+++  +  WK VL  F+ +F +++D  +
Sbjct: 520 EKMGEIVTDRLEENFRELMNYDFTAQMENNLDQVANHEAEWKAVLDHFFSDFTQQLDKAE 579

Query: 574 KLRIS 578
           K    
Sbjct: 580 KDPEE 584