PSIBLAST alignment of GI: 254780306 and protein with PDB id: 1mw8
>gi|38492440|pdb|1MW8|X Chain X, Crystal Structure Of A Complex Between H365r Mutant Of 67 Kda N-Terminal Fragment Of E. Coli Dna Topoisomerase I And 5'-Acttcgggatg-3' Length = 592
>gi|38492442|pdb|1MW9|X Chain X, Crystal Structure Of H365r Mutant Of 67 Kda N-Terminal Fragment Of E. Coli Dna Topoisomerase I Length = 592
Score = 453 bits (1166), Expect = e-125, Method: Composition-based stats.
Identities = 241/605 (39%), Positives = 348/605 (57%), Gaps = 54/605 (8%)
Query: 3 VIIVESPAKAKTISKYLGSNYKVLSSFGHIRDLPAK------------------------ 38
++IVESPAKAKTI+KYLGS+Y V SS GHIRDLP
Sbjct: 5 LVIVESPAKAKTINKYLGSDYVVKSSVGHIRDLPTSGSAAKKSADSTSTKTAKKPKKDER 64
Query: 39 -----KGSVLPEKEFEMIWNIDPSSQKHLQNIIHAVKSSTILILATDPDREGEAISWHVL 93
+ V P +E + + P +K + + + + + LATD DREGEAI+WH+
Sbjct: 65 GALVNRMGVDPWHNWEAHYEVLPGKEKVVSELKQLAEKADHIYLATDLDREGEAIAWHLR 124
Query: 94 DVLRQKNLIEKTKIQRVSFNAITKQVVLNAMKSPRDINLDLVNAYLARRALDYLVGFNLS 153
+V+ + + RV FN ITK + A P ++N+D VNA ARR +D +VG+ +S
Sbjct: 125 EVIG----GDDARYSRVVFNEITKNAIRQAFNKPGELNIDRVNAQQARRFMDRVVGYMVS 180
Query: 154 PILWQKLPGARSAGRVQSVALRLICNRENQIESFVSEEYWSLSVLLETPRNDKFTAHLTD 213
P+LW+K+ SAGRVQSVA+RL+ RE +I++FV EE+W + TP + +T
Sbjct: 181 PLLWKKIARGLSAGRVQSVAVRLVVEREREIKAFVPEEFWEVDASTTTPSGEALALQVTH 240
Query: 214 FNGQRIEKKSISNKKEADDLISFVKKATYSVEKIENKPIKRNPWPAFTTSTLQQVASSRL 273
N + NK++ +S ++KA YSV + E+KP P F TSTLQQ AS+RL
Sbjct: 241 QNDKPFRP---VNKEQTQAAVSLLEKARYSVLEREDKPTTSKPGAPFITSTLQQAASTRL 297
Query: 274 GFSASHTMRIAQKLYEGIDVNGEIVGLITYMRTDGVHMSPDALEAVRRSITSHYGDHYLP 333
GF TM +AQ+LYE G ITYMRTD ++S DA+ VR I+ ++G YLP
Sbjct: 298 GFGVKKTMMMAQRLYE--------AGYITYMRTDSTNLSQDAVNMVRGYISDNFGKKYLP 349
Query: 334 EKPRIYSSKSKNAQEAHEAIRPNDFDFLPSKMKQFLDSDQFQLYNLIWKRSVASQMASAK 393
E P Y+SK N+QEA EAIRP+D + + +K +++D +LY LIW++ VA QM AK
Sbjct: 350 ESPNQYASKE-NSQEAREAIRPSDVNVMAESLK-DMEADAQKLYQLIWRQFVACQMTPAK 407
Query: 394 FERTTVNIIATYNDQIGHLRTTGSLLCFDGFLKVWENQYDQEKNSEEDILLPYISANEQL 453
++ TT+ + A L+ G +L FDG+ KV +ED +LP ++ + L
Sbjct: 408 YDSTTLTVGA----GDFRLKARGRILRFDGWTKVMPALRK----GDEDRILPAVNKGDAL 459
Query: 454 IATETNASQHFTEPPPRYSESSLIKKMEEIGIGRPSTYATILETLYKRKYVIAEKRKILP 513
E +QHFT+PP R+SE+SL+K++E+ GIGRPSTYA+I+ T+ R YV E R+
Sbjct: 460 TLVELTPAQHFTKPPARFSEASLVKELEKRGIGRPSTYASIISTIQDRGYVRVENRRFYA 519
Query: 514 QNTGRIVTAFLENFFSQYVEYDFTADLEEKLDEISTGKLNWKEVLHEFWEEFIEKIDSIK 573
+ G IVT LE F + + YDFTA +E LD+++ + WK VL F+ +F +++D +
Sbjct: 520 EKMGEIVTDRLEENFRELMNYDFTAQMENNLDQVANHEAEWKAVLDHFFSDFTQQLDKAE 579
Query: 574 KLRIS 578
K
Sbjct: 580 KDPEE 584