RPSBLAST alignment for GI: 254780306 and conserved domain: pfam01131

>gnl|CDD|144649 pfam01131, Topoisom_bac, DNA topoisomerase. This subfamily of topoisomerase is divided on the basis that these enzymes preferentially relax negatively supercoiled DNA, from a 5' phospho- tyrosine linkage in the enzyme-DNA covalent intermediate and has high affinity for single stranded DNA. Length = 403

 Score =  415 bits (1068), Expect = e-116
 Identities = 170/435 (39%), Positives = 238/435 (54%), Gaps = 38/435 (8%)

Query: 129 DINLDLVNAYLARRALDYLVGFNLSPILWQKL-PGARSAGRVQSVALRLICNRENQIESF 187
           + + +LV+A  ARR LD L+GFNLS  L  K      SAGRVQ+  L LI  RE +I++F
Sbjct: 1   EEDENLVDAQEARRILDRLIGFNLSRALTLKGNKKVLSAGRVQTPTLGLIVEREKEIKNF 60

Query: 188 VSEEYWSLSVLLETPRNDKFTAHLTDFNGQRIEKKSISNKKEADDLISFVKKATYSVEKI 247
           V E YW++   L             +F   + E+    +K+EA+ ++  +K  T +V+ +
Sbjct: 61  VPEPYWTVEATLGKD----------EFAAGKDEEGRFFDKEEAEAIVEKIKGKTATVKSV 110

Query: 248 ENKPIKRNPWPAFTTSTLQQVASSRLGFSASHTMRIAQKLYEGIDVNGEIVGLITYMRTD 307
           E K  K  P   F TSTLQ+ AS +LGFSA  TM IAQKLYE         GLITY RTD
Sbjct: 111 EKKEKKEPPPLPFNTSTLQKEASRKLGFSAKKTMDIAQKLYEK--------GLITYPRTD 162

Query: 308 GVHMSPDA-LEAVRRSITSHYGDHYLPEKPRIYSSKSKNAQ--EAHEAIRPNDFDFLPSK 364
             ++S DA L A+   +   +G+ YLP  P++   KS       AHEAIRP      P  
Sbjct: 163 STYLSEDAELAAILEYLAKRFGEEYLPYAPKLVKPKSPGNAKVGAHEAIRPTG----PIP 218

Query: 365 MKQFLDSDQFQLYNLIWKRSVASQMASAKFERTTVNIIATYNDQIGHLRTTGSLLCFDGF 424
               L  D+ +LY+LI +R +ASQM  A +E T V +      +    + +G +L   G+
Sbjct: 219 RLPELSDDERKLYDLIVRRFLASQMPPAVYEETKVELEV--GGEE--FKASGKVLLEPGW 274

Query: 425 LKVWENQYDQEKNSEEDILLPYISANEQLIATETNASQHFTEPPPRYSESSLIKKMEEIG 484
            KV    Y   K  +ED   P +   E+L   +    +  T+PPPRY+E+SLIK ME+ G
Sbjct: 275 KKV----YPYSK--DEDEEPPELKEGEELTVQKVELEEKKTKPPPRYTEASLIKAMEKRG 328

Query: 485 IGRPSTYATILETLYKRKYVIAEKRKIL-PQNTGRIVTAFLENFFSQYVEYDFTADLEEK 543
           IG P+T A+I+ETL +R YV  +K K L P + GR +   L  F    V  + TA LEE 
Sbjct: 329 IGTPATRASIIETLLERGYVERKKNKRLVPTDLGRALIDALPRFPD-LVSPELTARLEET 387

Query: 544 LDEISTGKLNWKEVL 558
           LDEI+ G+ ++++VL
Sbjct: 388 LDEIARGEKDYEDVL 402