RPSBLAST alignment for GI: 254780306 and conserved domain: PTZ00407

>gnl|CDD|173597 PTZ00407, PTZ00407, DNA topoisomerase IA; Provisional. Length = 805
 Score =  138 bits (348), Expect = 8e-33
 Identities = 141/577 (24%), Positives = 239/577 (41%), Gaps = 91/577 (15%)

Query: 47  EFEMIWNIDPSS--QKHLQNIIHA-VKSSTILILATDPDREGEAISWHVLDVLRQKNLIE 103
           E+ + W + P    Q+ L+  I     + T +ILATDPDREGE I+ H L  +++     
Sbjct: 97  EYTLEWELLPGRRIQETLERYIEEKADNVTEIILATDPDREGELIAVHALQTIKRLYPKL 156

Query: 104 KTKIQRVSFNAITKQVVLNAMK--SPRDINLDLVNAYLARRALDYLVGFNLSPILWQKLP 161
           K    R   ++IT+  +  AM+       + DL NA   R A+D + GF  S ++     
Sbjct: 157 KVPFSRAYMHSITEDGIRKAMRERHVEACDYDLANAAETRHAMDRIFGFLGSSVVRAANS 216

Query: 162 GARSAGRVQSVALRLICNRENQIESFVSEEYWSLSV----LLETPRNDKFTAHLTDFNGQ 217
             RS GRVQ+ AL LI  RE++I++F+     +  V       +P    F+  +T    +
Sbjct: 217 QMRSIGRVQTPALILINEREDKIKAFLESNKSTFEVQAMCQFPSPHGTTFSQVVTITPDR 276

Query: 218 RIEKKSISNKKEADDLISFVKKATYSVEKIENKPI----KRNPWPAFTTSTLQQVASSRL 273
           +      + + EA   +   K    +   +  +P        P   FT +T    A+ +L
Sbjct: 277 KGGASHWATEAEARRCLEQWKLNNCTGFSVPLEPKPQPSVVPPPQPFTMATAIAKANRQL 336

Query: 274 GFSASHTMRIAQKLYEGIDVNGEIVGLITYMRTDGVHMSPDALEAVRRSITSHYGDHYL- 332
            +S+       Q L++        +G ITY RTD   +   AL  +  ++   +G  +L 
Sbjct: 337 KYSSEMVSGCLQDLFQ--------LGHITYPRTDSTRIDESALPDIYAAVKKEFGKEFLY 388

Query: 333 --------------PEKPRIYSSKSK---------NAQEAHEAIRPNDFDF------LPS 363
                          +K     S  +         N ++AHEAIRP + D       L  
Sbjct: 389 RLEDRTVSAQEGKGSKKTGKKRSTKQKKGADTPVGNVEDAHEAIRPTNIDTTGESLSLSP 448

Query: 364 KMKQFLDSDQFQLYNLIWKRSVASQMASAKFER--TTVNIIATYNDQI------GHLRTT 415
             +         +Y+L+ + ++A  M   K E+   TV   +   +++        +   
Sbjct: 449 PTR--------AVYDLVRRNTLAVFMIPMKTEKIVATVKFTSGSGEKLEFELQGKRVVEP 500

Query: 416 GSLLCFDGFLK-----VWENQYDQEKNSEEDILLPYISANE----QLIATETNA--SQHF 464
           G    F    K       E   D     E   ++P +S  E      + ++  +   + F
Sbjct: 501 GWTRAFHKGDKGTTGPAEETDEDITAVEEGAPVVPSLSQEEFKAIMNLRSQLGSGVQKGF 560

Query: 465 TE------------PPPRYSESSLIKKMEEIGIGRPSTYATILETLYKRKYV-IAEKRKI 511
            E            PP  +SE +LI++++  G+GRPSTY  I++TL  R Y+ +  K + 
Sbjct: 561 FELRSPQVRENRPVPPLPHSEGTLIEELKNNGVGRPSTYPMIVKTLLARGYIAVNPKGRC 620

Query: 512 LPQNTGRIVTAFLENFFSQYVEYDFTADLEEKLDEIS 548
                GR++    ++ F   V+  FTA  E+KLD I+
Sbjct: 621 ETTPVGRMLVETAKSTFPSIVDIGFTAAFEKKLDRIA 657