RPSBLAST alignment for GI: 254780306 and conserved domain: PRK05776

>gnl|CDD|180251 PRK05776, PRK05776, DNA topoisomerase I; Provisional. Length = 670
 Score =  250 bits (641), Expect = 1e-66
 Identities = 183/620 (29%), Positives = 282/620 (45%), Gaps = 87/620 (14%)

Query: 3   VIIVESPAKAKTIS--------------------KYLGSNYKVLSSFGHIRDL-PAKKGS 41
           ++I E P  A+ I+                    K  G    V  + GH+  L    KG 
Sbjct: 4   LVIAEKPKAARKIAEALSEKPIRCRIYGVPYWIVKRDGKKIVVAPAAGHLFGLHTKSKGF 63

Query: 42  VLPEKEFEMIWNIDPSSQKHLQNIIHAVKS----STILILATDPDREGEAISWHVLDVLR 97
            + + E++ ++ ID  S K+ +     + S    +   I A D D EG  I + ++    
Sbjct: 64  PVFDYEWKPLYEIDKGS-KYTKKYYELLSSLSKYADEFINACDYDIEGSVIGYLII---- 118

Query: 98  QKNLIEKTKIQRVSFNAITKQVVLNAMKSPRDINLDLVNAYLARRALDYLVGFNLSPIL- 156
            K L +  K +R+ F+A+TK  +  A ++   ++ +++NA +AR  LD+L G N+S  L 
Sbjct: 119 -KYLGDPKKAKRMKFSALTKSDIRRAFRNLETLDYEMINAGIARHELDWLWGINVSRALM 177

Query: 157 --WQKLPGAR---SAGRVQSVALRLICNRENQIESFVSEEYWSLSVLLETPRNDKFTAHL 211
              +   G R   SAGRVQS  L+ +  RE +   FV   Y+S+S+++E     +FT   
Sbjct: 178 SSVRDASGKRVILSAGRVQSPTLKYVVEREIERNLFVPLPYFSVSIIIEK-NGYEFTL-- 234

Query: 212 TDFNGQRIEKKSISNKKEADDLISFVKKATY-SVEKIENKPIKRNPWPAFTTSTLQQVAS 270
                 + E K    K+EA +++  +KK  Y  V K+E K     P P F    LQ  A+
Sbjct: 235 ------KYENKKFETKEEAKEILEEIKKTGYLKVTKVEVKIEILEPPPPFNLGDLQVEAA 288

Query: 271 SRLGFSASHTMRIAQKLYEGIDVNGEIVGLITYMRTDGVHMSPD-----ALEAVRRSITS 325
              GFS   T  IA+ LY          GLI+Y RT+   + P       L+ + RS   
Sbjct: 289 RIYGFSPYKTQSIAEDLYLD--------GLISYPRTNSQKLPPTLNIRNILKGLSRS--P 338

Query: 326 HYGD--HYLPEKPRIYSSKSKNAQE--AHEAIRPNDFDFLPSKMKQFLDSDQFQLYNLIW 381
            Y    + L ++ +      +  ++  AH AI P      P      L  D+F+LY+LI 
Sbjct: 339 QYRPLVNLLLKETKGVLKPVQGPKDDPAHPAIYPT--GEPPKN----LSKDEFKLYDLIV 392

Query: 382 KRSVASQMASAKFERTTVNIIATYNDQIGHLRTTGSLLCFDGFLKVWENQYDQEKNSEED 441
           +R +AS  A A    T V               +G  +   G+LK     Y   K  EE+
Sbjct: 393 RRFLASFAAPAVLSNTIV--TLRVPGFPLVFSASGQRIEERGWLKY----YPFHKFDEEE 446

Query: 442 ILLPYISANEQLIATETNASQHFTEPPPRYSESSLIKKMEEIGIGRPSTYATILETLYKR 501
             LP +   E++   +    + +T+PP RYS++SL+K ME +GIG  +T A I+ETL+KR
Sbjct: 447 --LPLLKKGERVKIVDVKVRKSYTKPPSRYSKASLLKWMESVGIGTEATRARIIETLFKR 504

Query: 502 KYVIAEKRKILPQNTGRIVTAFLENFFSQYVEYDFTADLEEKLDEISTGKLNWKEVLHE- 560
            Y+ +  + I     G  V   LE +F   V  + T D EEKL+ I TGK   +EV+ E 
Sbjct: 505 GYLTSNGKYIEVTPLGFGVAEVLEKYFPDIVSVELTRDFEEKLEMIRTGKATREEVIEEA 564

Query: 561 ------FWEEFIEKIDSIKK 574
                   EEF +  D I +
Sbjct: 565 KETLNKLLEEFKKNKDEIGE 584