RPSBLAST alignment for GI: 254780306 and conserved domain: PRK05776
>gnl|CDD|180251 PRK05776, PRK05776, DNA topoisomerase I; Provisional. Length = 670
Score = 250 bits (641), Expect = 1e-66
Identities = 183/620 (29%), Positives = 282/620 (45%), Gaps = 87/620 (14%)
Query: 3 VIIVESPAKAKTIS--------------------KYLGSNYKVLSSFGHIRDL-PAKKGS 41
++I E P A+ I+ K G V + GH+ L KG
Sbjct: 4 LVIAEKPKAARKIAEALSEKPIRCRIYGVPYWIVKRDGKKIVVAPAAGHLFGLHTKSKGF 63
Query: 42 VLPEKEFEMIWNIDPSSQKHLQNIIHAVKS----STILILATDPDREGEAISWHVLDVLR 97
+ + E++ ++ ID S K+ + + S + I A D D EG I + ++
Sbjct: 64 PVFDYEWKPLYEIDKGS-KYTKKYYELLSSLSKYADEFINACDYDIEGSVIGYLII---- 118
Query: 98 QKNLIEKTKIQRVSFNAITKQVVLNAMKSPRDINLDLVNAYLARRALDYLVGFNLSPIL- 156
K L + K +R+ F+A+TK + A ++ ++ +++NA +AR LD+L G N+S L
Sbjct: 119 -KYLGDPKKAKRMKFSALTKSDIRRAFRNLETLDYEMINAGIARHELDWLWGINVSRALM 177
Query: 157 --WQKLPGAR---SAGRVQSVALRLICNRENQIESFVSEEYWSLSVLLETPRNDKFTAHL 211
+ G R SAGRVQS L+ + RE + FV Y+S+S+++E +FT
Sbjct: 178 SSVRDASGKRVILSAGRVQSPTLKYVVEREIERNLFVPLPYFSVSIIIEK-NGYEFTL-- 234
Query: 212 TDFNGQRIEKKSISNKKEADDLISFVKKATY-SVEKIENKPIKRNPWPAFTTSTLQQVAS 270
+ E K K+EA +++ +KK Y V K+E K P P F LQ A+
Sbjct: 235 ------KYENKKFETKEEAKEILEEIKKTGYLKVTKVEVKIEILEPPPPFNLGDLQVEAA 288
Query: 271 SRLGFSASHTMRIAQKLYEGIDVNGEIVGLITYMRTDGVHMSPD-----ALEAVRRSITS 325
GFS T IA+ LY GLI+Y RT+ + P L+ + RS
Sbjct: 289 RIYGFSPYKTQSIAEDLYLD--------GLISYPRTNSQKLPPTLNIRNILKGLSRS--P 338
Query: 326 HYGD--HYLPEKPRIYSSKSKNAQE--AHEAIRPNDFDFLPSKMKQFLDSDQFQLYNLIW 381
Y + L ++ + + ++ AH AI P P L D+F+LY+LI
Sbjct: 339 QYRPLVNLLLKETKGVLKPVQGPKDDPAHPAIYPT--GEPPKN----LSKDEFKLYDLIV 392
Query: 382 KRSVASQMASAKFERTTVNIIATYNDQIGHLRTTGSLLCFDGFLKVWENQYDQEKNSEED 441
+R +AS A A T V +G + G+LK Y K EE+
Sbjct: 393 RRFLASFAAPAVLSNTIV--TLRVPGFPLVFSASGQRIEERGWLKY----YPFHKFDEEE 446
Query: 442 ILLPYISANEQLIATETNASQHFTEPPPRYSESSLIKKMEEIGIGRPSTYATILETLYKR 501
LP + E++ + + +T+PP RYS++SL+K ME +GIG +T A I+ETL+KR
Sbjct: 447 --LPLLKKGERVKIVDVKVRKSYTKPPSRYSKASLLKWMESVGIGTEATRARIIETLFKR 504
Query: 502 KYVIAEKRKILPQNTGRIVTAFLENFFSQYVEYDFTADLEEKLDEISTGKLNWKEVLHE- 560
Y+ + + I G V LE +F V + T D EEKL+ I TGK +EV+ E
Sbjct: 505 GYLTSNGKYIEVTPLGFGVAEVLEKYFPDIVSVELTRDFEEKLEMIRTGKATREEVIEEA 564
Query: 561 ------FWEEFIEKIDSIKK 574
EEF + D I +
Sbjct: 565 KETLNKLLEEFKKNKDEIGE 584