RPSBLAST alignment for GI: 254780306 and conserved domain: COG0550
>gnl|CDD|30896 COG0550, TopA, Topoisomerase IA [DNA replication, recombination, and repair]. Length = 570
Score = 622 bits (1606), Expect = e-178
Identities = 280/581 (48%), Positives = 383/581 (65%), Gaps = 32/581 (5%)
Query: 1 MNVIIVESPAKAKTISKYLGSNYKVLSSFGHIRDLP---AKKGSVLPEK-EFEMIWNIDP 56
+IIVESP+KAKTI+KYLG Y V +S GH+RDLP KG V + FE + I P
Sbjct: 1 KRLIIVESPSKAKTIAKYLGKGYVVTASVGHLRDLPFPEEYKGWVDVDLPIFEPKYIIKP 60
Query: 57 -SSQKHLQNIIHAVKSSTILILATDPDREGEAISWHVLDVLRQKNLIEKTKIQRVSFNAI 115
+K ++ + K + + LATDPDREGEAI WH+L+VL+ KN +K++RV F+ I
Sbjct: 61 GKKKKVVKKLKKLAKKADEVYLATDPDREGEAIGWHILEVLKLKN---PSKVKRVVFSEI 117
Query: 116 TKQVVLNAMKSPRDINLDLVNAYLARRALDYLVGFNLSPILWQKLP-GARSAGRVQSVAL 174
TK+ +L+A K+PR+I+++LV+A LARR LD LVG+NLS +LW+KL G SAGRVQS AL
Sbjct: 118 TKKAILSAFKNPREIDMNLVDAQLARRILDRLVGYNLSRLLWKKLKRGVLSAGRVQSPAL 177
Query: 175 RLICNRENQIESFVSEEYWSLSVLLETPRNDKFTAHLTDFNGQRIEKKSISNKKEADDLI 234
RL+ RE +IE+FV EEYW + + E +F+A LT+ G++ + + +K EA++++
Sbjct: 178 RLVVEREREIEAFVPEEYWEIKAIFEKGGG-EFSARLTEIEGKKEGR--LKDKDEAEEIV 234
Query: 235 SFVKKATYSVEKIENKPIKRNPWPAFTTSTLQQVASSRLGFSASHTMRIAQKLYEGIDVN 294
+ +K V +E KP KR+P P FTTSTLQQ AS +LGFSA TM IAQKLYEG
Sbjct: 235 NKLKGKPAKVVSVEKKPKKRSPPPPFTTSTLQQEASRKLGFSAKKTMDIAQKLYEG---- 290
Query: 295 GEIVGLITYMRTDGVHMSPDALEAVRRSITSH-YGDHYLPEKPRIYSSKSKNAQEAHEAI 353
GLITY RTD +S +AL R I + YG YLP KPR Y SK K AQEAHEAI
Sbjct: 291 ---HGLITYPRTDSTRLSEEALAEARLYILAIAYGKEYLPLKPRRYPSKGKKAQEAHEAI 347
Query: 354 RPNDFDFLPSKMKQFLDSDQFQLYNLIWKRSVASQMASAKFERTTVNIIATYNDQIGHLR 413
RP DF+ P +K D+ +LY+LIW+R +ASQM A +E+TTV + +
Sbjct: 348 RPTDFE-TPESLK---AYDELKLYDLIWRRFLASQMPDAIYEKTTVTLEVAG----EKFK 399
Query: 414 TTGSLLCFDGFLKVWENQYDQEKNSEEDILLPYISANEQLIATETNASQHFTEPPPRYSE 473
+G +L FDG+LKV Y ++K+ EED LP + ++L + +HFT+PPPRY+E
Sbjct: 400 ASGKVLKFDGWLKV----YGEDKDEEEDKELPELKEGDELKVEKLEVEEHFTKPPPRYTE 455
Query: 474 SSLIKKMEEIGIGRPSTYATILETLYKRKYVIAEKRKILPQNTGRIVTAFLENFFSQYVE 533
+SL+K ME++GIG PSTYA+I+ETL KR YV + ++++P G V LE +F + V+
Sbjct: 456 ASLVKAMEKLGIGTPSTYASIIETLQKRGYVEKKGKRLVPTELGEAVIELLEEYFPELVD 515
Query: 534 YDFTADLEEKLDEISTGKLNWKEVLHEFWEEFIEKIDSIKK 574
DFTA +EEKLDEI+ GKL WK+VL EF ++F + ++ KK
Sbjct: 516 PDFTAKMEEKLDEIAEGKLEWKDVLDEFKKKFSKLLEEAKK 556