RPSBLAST alignment for GI: 254780306 and conserved domain: COG0550

>gnl|CDD|30896 COG0550, TopA, Topoisomerase IA [DNA replication, recombination, and repair]. Length = 570
 Score =  622 bits (1606), Expect = e-178
 Identities = 280/581 (48%), Positives = 383/581 (65%), Gaps = 32/581 (5%)

Query: 1   MNVIIVESPAKAKTISKYLGSNYKVLSSFGHIRDLP---AKKGSVLPEK-EFEMIWNIDP 56
             +IIVESP+KAKTI+KYLG  Y V +S GH+RDLP     KG V  +   FE  + I P
Sbjct: 1   KRLIIVESPSKAKTIAKYLGKGYVVTASVGHLRDLPFPEEYKGWVDVDLPIFEPKYIIKP 60

Query: 57  -SSQKHLQNIIHAVKSSTILILATDPDREGEAISWHVLDVLRQKNLIEKTKIQRVSFNAI 115
              +K ++ +    K +  + LATDPDREGEAI WH+L+VL+ KN    +K++RV F+ I
Sbjct: 61  GKKKKVVKKLKKLAKKADEVYLATDPDREGEAIGWHILEVLKLKN---PSKVKRVVFSEI 117

Query: 116 TKQVVLNAMKSPRDINLDLVNAYLARRALDYLVGFNLSPILWQKLP-GARSAGRVQSVAL 174
           TK+ +L+A K+PR+I+++LV+A LARR LD LVG+NLS +LW+KL  G  SAGRVQS AL
Sbjct: 118 TKKAILSAFKNPREIDMNLVDAQLARRILDRLVGYNLSRLLWKKLKRGVLSAGRVQSPAL 177

Query: 175 RLICNRENQIESFVSEEYWSLSVLLETPRNDKFTAHLTDFNGQRIEKKSISNKKEADDLI 234
           RL+  RE +IE+FV EEYW +  + E     +F+A LT+  G++  +  + +K EA++++
Sbjct: 178 RLVVEREREIEAFVPEEYWEIKAIFEKGGG-EFSARLTEIEGKKEGR--LKDKDEAEEIV 234

Query: 235 SFVKKATYSVEKIENKPIKRNPWPAFTTSTLQQVASSRLGFSASHTMRIAQKLYEGIDVN 294
           + +K     V  +E KP KR+P P FTTSTLQQ AS +LGFSA  TM IAQKLYEG    
Sbjct: 235 NKLKGKPAKVVSVEKKPKKRSPPPPFTTSTLQQEASRKLGFSAKKTMDIAQKLYEG---- 290

Query: 295 GEIVGLITYMRTDGVHMSPDALEAVRRSITSH-YGDHYLPEKPRIYSSKSKNAQEAHEAI 353
               GLITY RTD   +S +AL   R  I +  YG  YLP KPR Y SK K AQEAHEAI
Sbjct: 291 ---HGLITYPRTDSTRLSEEALAEARLYILAIAYGKEYLPLKPRRYPSKGKKAQEAHEAI 347

Query: 354 RPNDFDFLPSKMKQFLDSDQFQLYNLIWKRSVASQMASAKFERTTVNIIATYNDQIGHLR 413
           RP DF+  P  +K     D+ +LY+LIW+R +ASQM  A +E+TTV +           +
Sbjct: 348 RPTDFE-TPESLK---AYDELKLYDLIWRRFLASQMPDAIYEKTTVTLEVAG----EKFK 399

Query: 414 TTGSLLCFDGFLKVWENQYDQEKNSEEDILLPYISANEQLIATETNASQHFTEPPPRYSE 473
            +G +L FDG+LKV    Y ++K+ EED  LP +   ++L   +    +HFT+PPPRY+E
Sbjct: 400 ASGKVLKFDGWLKV----YGEDKDEEEDKELPELKEGDELKVEKLEVEEHFTKPPPRYTE 455

Query: 474 SSLIKKMEEIGIGRPSTYATILETLYKRKYVIAEKRKILPQNTGRIVTAFLENFFSQYVE 533
           +SL+K ME++GIG PSTYA+I+ETL KR YV  + ++++P   G  V   LE +F + V+
Sbjct: 456 ASLVKAMEKLGIGTPSTYASIIETLQKRGYVEKKGKRLVPTELGEAVIELLEEYFPELVD 515

Query: 534 YDFTADLEEKLDEISTGKLNWKEVLHEFWEEFIEKIDSIKK 574
            DFTA +EEKLDEI+ GKL WK+VL EF ++F + ++  KK
Sbjct: 516 PDFTAKMEEKLDEIAEGKLEWKDVLDEFKKKFSKLLEEAKK 556