HHsearch alignment for GI: 254780307 and conserved domain: PRK01438
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional.
Probab=93.50 E-value=0.27 Score=27.13 Aligned_cols=87 Identities=20% Similarity=0.213 Sum_probs=52.3
Q ss_pred EEEEEECCCCHHHHHHHHHHHHCCCCEEEEEEEECCCC--CCE---EEECCCCEEEEEECCHHHHCCCCEEEECCCHHHH
Q ss_conf 17999816677899999999744998078999974765--875---6002781589987794363188478606875899
Q gi|254780307|r 3 FKVAVVGATGNVGREMLNIICERGFPISEVVALASERS--AGT---KVPFGKETIDVQDVKSYDFSDTDICLMSAGHAVS 77 (335)
Q Consensus 3 ~kvaIiGatG~vG~el~~lL~~~~~p~~~l~~~~s~~~--~G~---~i~~~~~~~~~~~~~~~~~~~~Divf~a~p~~~s 77 (335)
T Consensus 15 k~v~V~Gl-G~sG~s~a~~L~~~G~---~v~~~D~~~~~~~~~~~~~l~~~g~~~~~g~~~~~~~~~~d~vV~SPGI~~~ 90 (481)
T PRK01438 15 LRVVVAGL-GVSGFPAADALHELGA---SVTVVADGDDDRSRERAALLEVLGATVRLGDGETTLPEGTELVVTSPGWRPT 90 (481)
T ss_pred CEEEEEEE-CHHHHHHHHHHHHCCC---EEEEEECCCCCCCHHHHHHHHHCCCEEEECCCHHHHHCCCCEEEECCCCCCC
T ss_conf 98999957-5889999999996799---8999979987448689998885498899688756662489999989978998
Q ss_pred HHHHHHHCCCCEEEEE
Q ss_conf 9999750456517996
Q gi|254780307|r 78 SQMSPKIAANGCIVID 93 (335)
Q Consensus 78 ~~~~~~~~~~g~~VID 93 (335)
T Consensus 91 ~p~~~~a~~~gi~i~~ 106 (481)
T PRK01438 91 HPLLAAAAEAGIPVWG 106 (481)
T ss_pred CHHHHHHHHCCCCEEC
T ss_conf 9999999986993861