HHsearch alignment for GI: 254780307 and conserved domain: PRK01438

>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional.
Probab=93.50  E-value=0.27  Score=27.13  Aligned_cols=87  Identities=20%  Similarity=0.213  Sum_probs=52.3

Q ss_pred             EEEEEECCCCHHHHHHHHHHHHCCCCEEEEEEEECCCC--CCE---EEECCCCEEEEEECCHHHHCCCCEEEECCCHHHH
Q ss_conf             17999816677899999999744998078999974765--875---6002781589987794363188478606875899
Q gi|254780307|r    3 FKVAVVGATGNVGREMLNIICERGFPISEVVALASERS--AGT---KVPFGKETIDVQDVKSYDFSDTDICLMSAGHAVS   77 (335)
Q Consensus         3 ~kvaIiGatG~vG~el~~lL~~~~~p~~~l~~~~s~~~--~G~---~i~~~~~~~~~~~~~~~~~~~~Divf~a~p~~~s   77 (335)
T Consensus        15 k~v~V~Gl-G~sG~s~a~~L~~~G~---~v~~~D~~~~~~~~~~~~~l~~~g~~~~~g~~~~~~~~~~d~vV~SPGI~~~   90 (481)
T PRK01438         15 LRVVVAGL-GVSGFPAADALHELGA---SVTVVADGDDDRSRERAALLEVLGATVRLGDGETTLPEGTELVVTSPGWRPT   90 (481)
T ss_pred             CEEEEEEE-CHHHHHHHHHHHHCCC---EEEEEECCCCCCCHHHHHHHHHCCCEEEECCCHHHHHCCCCEEEECCCCCCC
T ss_conf             98999957-5889999999996799---8999979987448689998885498899688756662489999989978998


Q ss_pred             HHHHHHHCCCCEEEEE
Q ss_conf             9999750456517996
Q gi|254780307|r   78 SQMSPKIAANGCIVID   93 (335)
Q Consensus        78 ~~~~~~~~~~g~~VID   93 (335)
T Consensus        91 ~p~~~~a~~~gi~i~~  106 (481)
T PRK01438         91 HPLLAAAAEAGIPVWG  106 (481)
T ss_pred             CHHHHHHHHCCCCEEC
T ss_conf             9999999986993861