HHsearch alignment for GI: 254780307 and conserved domain: PRK02006
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional.
Probab=93.06 E-value=0.44 Score=25.82 Aligned_cols=86 Identities=13% Similarity=0.129 Sum_probs=53.8
Q ss_pred EEEEECCCCHHHHHHHHHHHHCCCCEEEEEEEECCCCCCEE--EECCCCE--EEEEECCHHHHCCCCEEEECCCH----H
Q ss_conf 79998166778999999997449980789999747658756--0027815--89987794363188478606875----8
Q gi|254780307|r 4 KVAVVGATGNVGREMLNIICERGFPISEVVALASERSAGTK--VPFGKET--IDVQDVKSYDFSDTDICLMSAGH----A 75 (335)
Q Consensus 4 kvaIiGatG~vG~el~~lL~~~~~p~~~l~~~~s~~~~G~~--i~~~~~~--~~~~~~~~~~~~~~Divf~a~p~----~ 75 (335)
T Consensus 9 ~vlV~Gl-G~sG~a~a~~L~~~G~---~V~~~D~~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~d~vV~SPGI~p~~p 84 (501)
T PRK02006 9 MVLVLGL-GESGLAMARWCARHGC---RLRVADTREAPPNLAALQAEGIDAEFVGGAFDPALLDGVELVALSPGLSPLEP 84 (501)
T ss_pred EEEEEEE-CHHHHHHHHHHHHCCC---EEEEEECCCCCCCHHHHHHCCCCCEEECCCCCHHHHCCCCEEEECCEECCCCC
T ss_conf 3999833-6889999999997898---49999899998619999860898189778898678468999998990088885
Q ss_pred HHHHHHHHHCCCCEEEEE
Q ss_conf 999999750456517996
Q gi|254780307|r 76 VSSQMSPKIAANGCIVID 93 (335)
Q Consensus 76 ~s~~~~~~~~~~g~~VID 93 (335)
T Consensus 85 ~~~~~l~~A~~~gi~i~~ 102 (501)
T PRK02006 85 ALAALLAAARERGIPVWG 102 (501)
T ss_pred CHHHHHHHHHHCCCCEEE
T ss_conf 431999999987995876