HHsearch alignment for GI: 254780307 and conserved domain: PRK04663
>PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional.
Probab=95.42 E-value=0.047 Score=31.70 Aligned_cols=88 Identities=17% Similarity=0.296 Sum_probs=52.0
Q ss_pred CCEEEEEECCCCHHHHHHHHHHHHCCCCEEEEEEEECCCCCC--EEEECCCCEEEEEECCHHHHCCCCEEEECCCHHHHH
Q ss_conf 961799981667789999999974499807899997476587--560027815899877943631884786068758999
Q gi|254780307|r 1 MTFKVAVVGATGNVGREMLNIICERGFPISEVVALASERSAG--TKVPFGKETIDVQDVKSYDFSDTDICLMSAGHAVSS 78 (335)
Q Consensus 1 M~~kvaIiGatG~vG~el~~lL~~~~~p~~~l~~~~s~~~~G--~~i~~~~~~~~~~~~~~~~~~~~Divf~a~p~~~s~ 78 (335)
T Consensus 7 ~K-kvlV~Gl-G~sG~s~a~~L~~~~-~~~~v~~~D~~~~~~~~~~l~-~~~~~~~g~~~~~~l~~~d~vV~SPGI~~~~ 82 (438)
T PRK04663 7 IK-NVVVVGL-GITGLSVVKHLRKTQ-PQLTVKVIDTRETPPGQEQLP-EDVELHSGGWNQDWLAEADLVVTNPGIALAT 82 (438)
T ss_pred CC-EEEEEEE-CHHHHHHHHHHHHCC-CCCEEEEECCCCCHHHHHHHH-CCCEEEECCCCHHHHCCCCEEEECCCCCCCC
T ss_conf 97-4999906-785899999999669-984699963988936887620-6976972788967836899999899769989
Q ss_pred HHHHHHCCCCEEEE
Q ss_conf 99975045651799
Q gi|254780307|r 79 QMSPKIAANGCIVI 92 (335)
Q Consensus 79 ~~~~~~~~~g~~VI 92 (335)
T Consensus 83 p~~~~a~~~~i~i~ 96 (438)
T PRK04663 83 PEIQPVLAKGIPVV 96 (438)
T ss_pred HHHHHHHHCCCCEE
T ss_conf 89999998699370