HHsearch alignment for GI: 254780307 and conserved domain: PRK07680
>PRK07680 late competence protein ComER; Validated.
Probab=96.65 E-value=0.0088 Score=36.13 Aligned_cols=95 Identities=13% Similarity=0.210 Sum_probs=56.4
Q ss_pred EEEEEECCCCHHHHHHHHHHHHCC-CCEEEEEEEECCCCCCEEEECCCC--EEEEEECCHHHHCCCCEEEECCCHHHHHH
Q ss_conf 179998166778999999997449-980789999747658756002781--58998779436318847860687589999
Q gi|254780307|r 3 FKVAVVGATGNVGREMLNIICERG-FPISEVVALASERSAGTKVPFGKE--TIDVQDVKSYDFSDTDICLMSAGHAVSSQ 79 (335)
Q Consensus 3 ~kvaIiGatG~vG~el~~lL~~~~-~p~~~l~~~~s~~~~G~~i~~~~~--~~~~~~~~~~~~~~~Divf~a~p~~~s~~ 79 (335)
T Consensus 1 MkI~fIG~-GnMg~Aii~gl~~~~~~~~~~i~i--~~r~~~~~~~l~~~~~~i~~~~~~~~~~~~~dvIiLaVKPq~~~~ 77 (273)
T PRK07680 1 MNIGFIGT-GNMGTILIEAFLESRAVKPSCLTI--TNRTPAKAYHIKEKYPSIHVAKTIEEVIEQSELIFICVKPLDIYP 77 (273)
T ss_pred CEEEEECC-CHHHHHHHHHHHHCCCCCCCEEEE--ECCCHHHHHHHHHHCCCEEEECCHHHHHHCCCEEEEECCHHHHHH
T ss_conf 98999876-999999999999779989456999--889989999999876990886888999840998999648888999
Q ss_pred HHHHHC---CCCEEEEECCCCHHC
Q ss_conf 997504---565179961451001
Q gi|254780307|r 80 MSPKIA---ANGCIVIDNSSAWRY 100 (335)
Q Consensus 80 ~~~~~~---~~g~~VIDlS~~~R~ 100 (335)
T Consensus 78 vl~~i~~~~~~~~~iISi~AGisi 101 (273)
T PRK07680 78 LLKKLAPHFSDEKCLVSITSPISP 101 (273)
T ss_pred HHHHHHHHCCCCCEEEEECCCCCH
T ss_conf 999988634788489995588889