HHsearch alignment for GI: 254780307 and conserved domain: TIGR01214

>TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1.1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process.
Probab=92.70  E-value=0.11  Score=29.45  Aligned_cols=94  Identities=21%  Similarity=0.359  Sum_probs=57.1

Q ss_pred             EEEEECCCCHHHHHHHHHHHHCCCCEEEEEEEECCC--CCCEE-----E----------ECCCCEEEE-----EECCHHH
Q ss_conf             799981667789999999974499807899997476--58756-----0----------027815899-----8779436
Q gi|254780307|r    4 KVAVVGATGNVGREMLNIICERGFPISEVVALASER--SAGTK-----V----------PFGKETIDV-----QDVKSYD   61 (335)
Q Consensus         4 kvaIiGatG~vG~el~~lL~~~~~p~~~l~~~~s~~--~~G~~-----i----------~~~~~~~~~-----~~~~~~~   61 (335)
T Consensus         1 rilitGa~GQlG~~L~~~l~--~-~g~~~~~~~~~~~~~~~~~~~~~Dl~dP~~l~~~~r~~~Pd~vvntAAYT~VD~AE   77 (317)
T TIGR01214         1 RILITGANGQLGRELVQQLS--K-PGRVVVALTRSTRLKLAARWSQLDLTDPEALEELLRAIRPDAVVNTAAYTDVDGAE   77 (317)
T ss_pred             CEEEECCCCHHHHHHHHHCC--C-CCCEEEEECCCCCCCHHHHHHHHCCCCHHHHHHHHHHHCCCEEEECCHHCCCCCCC
T ss_conf             97887387567999999707--8-88278643687776113365440622468899999852875376230110100003


Q ss_pred             HCCCCEEEECCCHHHHHHHHHHHCCCCEEEEECCCCHHCCC
Q ss_conf             31884786068758999999750456517996145100112
Q gi|254780307|r   62 FSDTDICLMSAGHAVSSQMSPKIAANGCIVIDNSSAWRYDS  102 (335)
Q Consensus        62 ~~~~Divf~a~p~~~s~~~~~~~~~~g~~VIDlS~~~R~~~  102 (335)
T Consensus        78 -~~~~~Aya-vNa~A~~~lA~~A~~~Ga~~vh~STDYVFDG  116 (317)
T TIGR01214        78 -SDPEKAYA-VNALAPQNLARAAARVGARLVHISTDYVFDG  116 (317)
T ss_pred             -CCHHHHHH-HHHHHHHHHHHHHHHCCCEEEEEEECEEECC
T ss_conf             -77778765-7407899999999866915999863423447