HHsearch alignment for GI: 254780307 and conserved domain: TIGR01214
>TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1.1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process.
Probab=92.70 E-value=0.11 Score=29.45 Aligned_cols=94 Identities=21% Similarity=0.359 Sum_probs=57.1
Q ss_pred EEEEECCCCHHHHHHHHHHHHCCCCEEEEEEEECCC--CCCEE-----E----------ECCCCEEEE-----EECCHHH
Q ss_conf 799981667789999999974499807899997476--58756-----0----------027815899-----8779436
Q gi|254780307|r 4 KVAVVGATGNVGREMLNIICERGFPISEVVALASER--SAGTK-----V----------PFGKETIDV-----QDVKSYD 61 (335)
Q Consensus 4 kvaIiGatG~vG~el~~lL~~~~~p~~~l~~~~s~~--~~G~~-----i----------~~~~~~~~~-----~~~~~~~ 61 (335)
T Consensus 1 rilitGa~GQlG~~L~~~l~--~-~g~~~~~~~~~~~~~~~~~~~~~Dl~dP~~l~~~~r~~~Pd~vvntAAYT~VD~AE 77 (317)
T TIGR01214 1 RILITGANGQLGRELVQQLS--K-PGRVVVALTRSTRLKLAARWSQLDLTDPEALEELLRAIRPDAVVNTAAYTDVDGAE 77 (317)
T ss_pred CEEEECCCCHHHHHHHHHCC--C-CCCEEEEECCCCCCCHHHHHHHHCCCCHHHHHHHHHHHCCCEEEECCHHCCCCCCC
T ss_conf 97887387567999999707--8-88278643687776113365440622468899999852875376230110100003
Q ss_pred HCCCCEEEECCCHHHHHHHHHHHCCCCEEEEECCCCHHCCC
Q ss_conf 31884786068758999999750456517996145100112
Q gi|254780307|r 62 FSDTDICLMSAGHAVSSQMSPKIAANGCIVIDNSSAWRYDS 102 (335)
Q Consensus 62 ~~~~Divf~a~p~~~s~~~~~~~~~~g~~VIDlS~~~R~~~ 102 (335)
T Consensus 78 -~~~~~Aya-vNa~A~~~lA~~A~~~Ga~~vh~STDYVFDG 116 (317)
T TIGR01214 78 -SDPEKAYA-VNALAPQNLARAAARVGARLVHISTDYVFDG 116 (317)
T ss_pred -CCHHHHHH-HHHHHHHHHHHHHHHCCCEEEEEEECEEECC
T ss_conf -77778765-7407899999999866915999863423447