HHsearch alignment for GI: 254780307 and conserved domain: cd01483

>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=94.46  E-value=0.29  Score=26.96  Aligned_cols=92  Identities=14%  Similarity=0.194  Sum_probs=56.7

Q ss_pred             EEEEECCCCHHHHHHHHHHHHCCCCEEEEEEEEC----CCCCCEEEEC-------------------CCCEEEEE----E
Q ss_conf             7999816677899999999744998078999974----7658756002-------------------78158998----7
Q gi|254780307|r    4 KVAVVGATGNVGREMLNIICERGFPISEVVALAS----ERSAGTKVPF-------------------GKETIDVQ----D   56 (335)
Q Consensus         4 kvaIiGatG~vG~el~~lL~~~~~p~~~l~~~~s----~~~~G~~i~~-------------------~~~~~~~~----~   56 (335)
T Consensus         1 kVlivG~-GglG~~va~~L~~~Gv--~~i~ivD~D~v~~~Nl~Rq~~~~~~dvG~~Ka~~a~~~l~~~np~v~i~~~~~~   77 (143)
T cd01483           1 RVLLVGL-GGLGSEIALNLARSGV--GKITLIDFDTVELSNLNRQFLARQADIGKPKAEVAARRLNELNPGVNVTAVPEG   77 (143)
T ss_pred             CEEEECC-CHHHHHHHHHHHHHCC--CCEEEEECCCCCCCCCCCCCCCCHHHHCCHHHHHHHHHHHHHCCCCEEEEEECC
T ss_conf             9999997-9899999999999379--719999789875001464225898894922489999999856898389999456


Q ss_pred             CCH----HHHCCCCEEEECCCHHHHHHHHHHH-CCCCEEEEECCCCH
Q ss_conf             794----3631884786068758999999750-45651799614510
Q gi|254780307|r   57 VKS----YDFSDTDICLMSAGHAVSSQMSPKI-AANGCIVIDNSSAW   98 (335)
Q Consensus        57 ~~~----~~~~~~Divf~a~p~~~s~~~~~~~-~~~g~~VIDlS~~~   98 (335)
T Consensus        78 ~~~~~~~~~~~~~dvvi~~~D~~~~r~~l~~~~~~~~ip~i~~~~~g  124 (143)
T cd01483          78 ISEDNLDDFLDGVDLVIDAIDNIAVRRALNRACKELGIPVIDAGGLG  124 (143)
T ss_pred             CCHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCC
T ss_conf             89646999975999999877999999999999998699889963667