Query gi|254780307|ref|YP_003064720.1| aspartate-semialdehyde dehydrogenase [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 335
No_of_seqs 128 out of 3309
Neff 7.2
Searched_HMMs 39220
Date Sun May 29 15:38:24 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780307.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK06598 aspartate-semialdehyd 100.0 0 0 696.6 24.7 334 1-334 1-348 (348)
2 TIGR01296 asd_B aspartate-semi 100.0 0 0 705.3 16.0 331 4-334 1-350 (350)
3 PRK06728 aspartate-semialdehyd 100.0 0 0 654.2 24.2 330 3-334 6-344 (347)
4 PRK08040 putative semialdehyde 100.0 0 0 653.4 24.9 329 1-334 1-334 (337)
5 PRK05671 aspartate-semialdehyd 100.0 0 0 651.3 25.2 330 1-334 1-334 (336)
6 COG0136 Asd Aspartate-semialde 100.0 0 0 606.4 21.1 327 2-332 1-334 (334)
7 PRK06901 aspartate-semialdehyd 100.0 0 0 577.8 22.3 315 1-334 1-321 (323)
8 TIGR01850 argC N-acetyl-gamma- 100.0 0 0 571.1 17.8 303 3-332 1-346 (361)
9 PRK08664 aspartate-semialdehyd 100.0 0 0 541.2 21.7 301 1-334 1-346 (350)
10 TIGR00978 asd_EA aspartate-sem 100.0 0 0 541.4 20.5 301 3-333 1-358 (358)
11 PRK00436 argC N-acetyl-gamma-g 100.0 0 0 524.9 21.2 297 3-332 2-330 (345)
12 PRK11863 N-acetyl-gamma-glutam 100.0 0 0 485.1 19.3 294 1-332 1-306 (314)
13 COG0002 ArgC Acetylglutamate s 100.0 0 0 484.3 19.0 303 1-332 1-334 (349)
14 KOG4354 consensus 100.0 0 0 354.0 16.9 294 3-333 20-326 (340)
15 KOG4777 consensus 100.0 0 0 356.1 10.2 314 1-334 1-358 (361)
16 TIGR01851 argC_other N-acetyl- 100.0 0 0 335.9 10.0 292 2-332 1-312 (314)
17 TIGR01745 asd_gamma aspartate- 100.0 0 0 304.8 0.1 328 3-330 1-365 (367)
18 pfam02774 Semialdhyde_dhC Semi 100.0 1.3E-36 3.4E-41 241.3 12.8 162 139-318 1-167 (167)
19 pfam01118 Semialdhyde_dh Semia 100.0 2.8E-32 7.1E-37 215.1 9.5 113 4-118 1-120 (121)
20 smart00859 Semialdhyde_dh Semi 100.0 2E-30 5.1E-35 203.8 8.4 112 4-117 1-121 (122)
21 PRK08955 glyceraldehyde-3-phos 99.9 6.6E-24 1.7E-28 164.3 20.1 296 1-332 1-331 (333)
22 PTZ00023 glyceraldehyde-3-phos 99.9 1.8E-23 4.5E-28 161.7 19.8 297 1-334 1-336 (337)
23 PRK07729 glyceraldehyde-3-phos 99.9 5.7E-23 1.5E-27 158.6 18.5 297 1-334 1-333 (343)
24 PRK07403 glyceraldehyde-3-phos 99.9 3.6E-22 9.1E-27 153.8 19.1 298 3-334 2-335 (337)
25 PRK13535 erythrose 4-phosphate 99.9 1.4E-21 3.6E-26 150.1 20.7 296 2-334 1-335 (336)
26 TIGR01534 GAPDH-I glyceraldehy 99.9 2E-21 5.2E-26 149.2 12.2 239 4-266 1-297 (366)
27 COG0057 GapA Glyceraldehyde-3- 99.9 9.5E-20 2.4E-24 139.1 18.6 292 2-333 1-332 (335)
28 PRK08289 glyceraldehyde-3-phos 99.8 1.6E-17 4.2E-22 125.5 17.1 293 5-333 132-472 (479)
29 TIGR01532 E4PD_g-proteo D-eryt 99.6 1.5E-14 3.8E-19 107.5 8.8 233 4-266 1-272 (334)
30 PRK04207 glyceraldehyde-3-phos 99.5 1.5E-13 3.8E-18 101.5 12.0 233 1-274 1-253 (338)
31 PRK08300 acetaldehyde dehydrog 99.2 4.8E-11 1.2E-15 86.3 6.9 165 2-176 4-178 (298)
32 TIGR03215 ac_ald_DH_ac acetald 99.2 6.1E-11 1.6E-15 85.6 6.9 165 2-176 1-172 (285)
33 pfam00044 Gp_dh_N Glyceraldehy 98.7 9.2E-08 2.4E-12 66.3 9.4 122 3-130 1-150 (150)
34 smart00846 Gp_dh_N Glyceraldeh 98.6 3.5E-07 8.9E-12 62.8 8.6 121 3-130 1-149 (149)
35 KOG0657 consensus 98.5 1.5E-07 3.8E-12 65.0 5.4 185 53-268 59-249 (285)
36 COG4569 MhpF Acetaldehyde dehy 98.4 3.1E-07 8E-12 63.1 5.2 136 2-143 4-146 (310)
37 pfam02800 Gp_dh_C Glyceraldehy 98.4 5.2E-07 1.3E-11 61.8 4.8 109 135-266 1-109 (158)
38 PRK13301 putative L-aspartate 98.3 2.6E-06 6.5E-11 57.6 7.6 96 1-98 1-97 (267)
39 CHL00194 ycf39 Ycf39; Provisio 98.2 1.1E-05 2.7E-10 53.9 9.1 91 3-96 1-110 (319)
40 PRK08655 prephenate dehydrogen 98.1 2.5E-05 6.4E-10 51.6 8.8 122 3-130 1-137 (441)
41 KOG4039 consensus 98.1 4E-05 1E-09 50.4 9.1 71 1-76 16-95 (238)
42 PRK00048 dihydrodipicolinate r 98.1 2.9E-05 7.5E-10 51.1 8.2 95 1-97 1-102 (265)
43 PRK07417 arogenate dehydrogena 98.0 1.6E-05 4E-10 52.8 6.0 91 2-98 1-95 (280)
44 PRK13302 putative L-aspartate 98.0 1.9E-05 4.8E-10 52.3 5.7 92 2-98 6-102 (271)
45 PRK08507 prephenate dehydrogen 97.9 2.5E-05 6.4E-10 51.6 6.1 91 3-98 1-94 (275)
46 PRK13304 L-aspartate dehydroge 97.9 2.6E-05 6.6E-10 51.5 5.9 139 3-156 2-145 (265)
47 TIGR01921 DAP-DH diaminopimela 97.9 9.6E-06 2.5E-10 54.1 3.4 121 1-133 1-130 (326)
48 TIGR03466 HpnA hopanoid-associ 97.9 0.00018 4.5E-09 46.4 9.3 92 3-97 1-114 (328)
49 PRK10206 putative dehydrogenas 97.8 8E-05 2E-09 48.5 7.3 89 1-92 1-93 (345)
50 PRK13303 L-aspartate dehydroge 97.8 5.9E-05 1.5E-09 49.3 6.6 137 3-156 2-145 (265)
51 PRK11880 pyrroline-5-carboxyla 97.8 5.6E-05 1.4E-09 49.5 6.4 161 1-167 1-177 (267)
52 PRK11579 putative oxidoreducta 97.8 5.2E-05 1.3E-09 49.7 6.0 87 2-92 4-92 (346)
53 PRK08374 homoserine dehydrogen 97.8 9E-05 2.3E-09 48.2 7.1 96 1-97 1-117 (316)
54 COG0287 TyrA Prephenate dehydr 97.8 8.2E-05 2.1E-09 48.5 6.5 94 1-98 2-101 (279)
55 PRK06270 homoserine dehydrogen 97.8 8.6E-05 2.2E-09 48.3 6.4 95 1-96 1-126 (342)
56 COG2910 Putative NADH-flavin r 97.7 7E-05 1.8E-09 48.9 5.7 134 3-154 1-153 (211)
57 pfam03435 Saccharop_dh Sacchar 97.7 8.9E-05 2.3E-09 48.2 6.2 116 5-133 1-125 (384)
58 pfam05368 NmrA NmrA-like famil 97.7 0.00021 5.4E-09 46.0 7.6 89 5-96 1-102 (232)
59 pfam01113 DapB_N Dihydrodipico 97.7 0.00036 9.1E-09 44.6 8.7 92 3-96 1-97 (122)
60 COG1748 LYS9 Saccharopine dehy 97.6 0.00022 5.5E-09 45.9 6.8 136 3-153 2-150 (389)
61 COG0289 DapB Dihydrodipicolina 97.6 0.0005 1.3E-08 43.7 8.1 93 1-95 1-101 (266)
62 PRK07502 cyclohexadienyl dehyd 97.6 0.00024 6.1E-09 45.6 6.5 92 4-98 8-103 (307)
63 PRK06349 homoserine dehydrogen 97.5 0.0002 5.2E-09 46.0 5.7 96 1-98 1-107 (432)
64 PRK11559 garR tartronate semia 97.5 8.2E-05 2.1E-09 48.4 3.6 91 2-98 1-98 (295)
65 pfam03446 NAD_binding_2 NAD bi 97.5 0.00013 3.3E-09 47.2 4.5 91 1-98 1-98 (163)
66 TIGR03649 ergot_EASG ergot alk 97.5 0.00083 2.1E-08 42.4 8.3 90 5-97 2-106 (285)
67 COG1712 Predicted dinucleotide 97.4 0.00026 6.7E-09 45.4 5.2 141 3-163 1-151 (255)
68 PRK06545 prephenate dehydrogen 97.4 0.00072 1.8E-08 42.7 6.8 92 4-98 2-96 (357)
69 COG0673 MviM Predicted dehydro 97.4 0.00024 6.1E-09 45.6 4.3 139 1-152 2-149 (342)
70 PRK12491 pyrroline-5-carboxyla 97.4 0.00058 1.5E-08 43.3 6.2 161 1-167 1-179 (272)
71 PRK06476 pyrroline-5-carboxyla 97.4 0.0007 1.8E-08 42.8 6.6 95 3-100 1-98 (255)
72 pfam01408 GFO_IDH_MocA Oxidore 97.4 0.00026 6.7E-09 45.4 4.4 86 3-92 1-90 (120)
73 pfam01210 NAD_Gly3P_dh_N NAD-d 97.4 0.002 5.2E-08 40.0 8.9 108 3-116 1-123 (159)
74 TIGR01546 GAPDH-II_archae glyc 97.3 0.0015 3.9E-08 40.7 8.0 222 5-276 1-252 (335)
75 PRK11199 tyrA bifunctional cho 97.3 0.0028 7.3E-08 39.1 9.4 78 4-99 100-179 (374)
76 PRK07679 pyrroline-5-carboxyla 97.3 0.00083 2.1E-08 42.3 6.5 161 1-167 1-181 (279)
77 PRK11908 NAD-dependent epimera 97.3 0.0021 5.4E-08 39.9 8.6 94 1-97 1-119 (347)
78 PRK08229 2-dehydropantoate 2-r 97.3 0.0045 1.1E-07 37.9 10.1 92 1-96 1-108 (341)
79 COG2085 Predicted dinucleotide 97.3 0.0011 2.8E-08 41.6 6.8 103 3-110 2-110 (211)
80 PRK00094 gpsA NAD(P)H-dependen 97.3 0.0019 4.9E-08 40.2 8.0 108 3-116 2-124 (325)
81 PRK05472 redox-sensing transcr 97.2 0.0014 3.5E-08 41.0 6.8 92 2-101 84-183 (211)
82 KOG4777 consensus 97.2 0.00024 6.2E-09 45.6 2.7 109 217-332 240-361 (361)
83 COG2344 AT-rich DNA-binding pr 97.2 0.0007 1.8E-08 42.8 5.0 91 3-100 85-182 (211)
84 pfam03447 NAD_binding_3 Homose 97.2 0.0025 6.5E-08 39.4 7.6 85 12-97 3-91 (116)
85 cd05294 LDH-like_MDH_nadp A la 97.1 0.0031 7.8E-08 38.9 7.9 70 3-73 1-81 (309)
86 cd01338 MDH_choloroplast_like 97.1 0.0032 8.1E-08 38.8 7.9 71 2-72 2-86 (322)
87 PRK06153 hypothetical protein; 97.1 0.00072 1.8E-08 42.7 4.4 20 246-265 270-289 (393)
88 COG0460 ThrA Homoserine dehydr 97.1 0.0018 4.6E-08 40.3 6.5 95 1-96 2-114 (333)
89 pfam03807 F420_oxidored NADP o 97.1 0.00078 2E-08 42.5 4.6 88 4-96 1-92 (93)
90 COG0345 ProC Pyrroline-5-carbo 97.1 0.00082 2.1E-08 42.4 4.5 156 3-167 2-176 (266)
91 PRK05708 2-dehydropantoate 2-r 97.1 0.0044 1.1E-07 37.9 8.2 92 1-96 1-105 (305)
92 PRK05442 malate dehydrogenase; 97.1 0.0042 1.1E-07 38.1 7.9 73 1-73 1-89 (325)
93 COG1004 Ugd Predicted UDP-gluc 97.0 0.0045 1.2E-07 37.9 7.6 89 3-96 1-121 (414)
94 PTZ00325 malate dehydrogenase; 97.0 0.002 5E-08 40.1 5.7 70 1-73 1-77 (313)
95 KOG1502 consensus 97.0 0.0016 4.1E-08 40.6 5.2 95 1-100 5-133 (327)
96 PRK06813 homoserine dehydrogen 96.9 0.0025 6.3E-08 39.5 5.8 96 1-97 1-124 (341)
97 PRK05086 malate dehydrogenase; 96.9 0.0041 1.1E-07 38.1 6.6 70 3-73 1-78 (312)
98 PRK07634 pyrroline-5-carboxyla 96.9 0.0029 7.4E-08 39.1 5.7 159 3-167 5-181 (245)
99 pfam00056 Ldh_1_N lactate/mala 96.8 0.003 7.6E-08 39.0 5.4 70 3-73 1-78 (142)
100 pfam10727 Rossmann-like Rossma 96.8 0.0017 4.4E-08 40.4 4.1 90 6-100 1-93 (111)
101 cd01337 MDH_glyoxysomal_mitoch 96.7 0.0042 1.1E-07 38.1 5.8 41 3-44 1-41 (310)
102 cd00704 MDH Malate dehydrogena 96.7 0.0035 9E-08 38.5 5.3 71 3-73 1-85 (323)
103 PRK05447 1-deoxy-D-xylulose 5- 96.7 0.0077 2E-07 36.5 6.7 40 1-42 1-40 (379)
104 PRK06928 pyrroline-5-carboxyla 96.7 0.0079 2E-07 36.4 6.7 95 1-100 1-102 (275)
105 PRK07680 late competence prote 96.6 0.0088 2.2E-07 36.1 6.9 95 3-100 1-101 (273)
106 COG1091 RfbD dTDP-4-dehydrorha 96.6 0.0074 1.9E-07 36.6 6.3 84 3-102 1-106 (281)
107 pfam02629 CoA_binding CoA bind 96.6 0.019 4.8E-07 34.1 8.1 84 2-92 3-90 (96)
108 cd01484 E1-2_like Ubiquitin ac 96.5 0.03 7.7E-07 32.9 8.7 108 4-113 1-140 (234)
109 TIGR03376 glycerol3P_DH glycer 96.5 0.047 1.2E-06 31.7 9.7 112 4-116 1-137 (342)
110 PRK06249 2-dehydropantoate 2-r 96.5 0.058 1.5E-06 31.2 10.1 92 2-97 5-108 (313)
111 COG0240 GpsA Glycerol-3-phosph 96.4 0.015 4E-07 34.6 6.7 107 3-115 2-123 (329)
112 PRK06444 prephenate dehydrogen 96.4 0.012 3.2E-07 35.2 6.2 61 3-97 1-61 (197)
113 COG0039 Mdh Malate/lactate deh 96.3 0.019 4.7E-07 34.2 7.0 68 3-73 1-78 (313)
114 COG0702 Predicted nucleoside-d 96.3 0.013 3.3E-07 35.1 6.1 67 3-73 1-72 (275)
115 pfam01488 Shikimate_DH Shikima 96.3 0.011 2.8E-07 35.5 5.6 94 3-102 13-115 (134)
116 cd05292 LDH_2 A subgroup of L- 96.3 0.019 4.8E-07 34.1 6.8 68 3-73 1-76 (308)
117 cd01336 MDH_cytoplasmic_cytoso 96.3 0.021 5.2E-07 33.9 7.0 72 2-73 2-87 (325)
118 COG3804 Uncharacterized conser 96.2 0.022 5.7E-07 33.7 6.9 103 1-111 1-111 (350)
119 TIGR00036 dapB dihydrodipicoli 96.2 0.031 8E-07 32.8 7.6 91 2-93 1-104 (281)
120 TIGR03026 NDP-sugDHase nucleot 96.2 0.026 6.5E-07 33.3 7.1 90 3-98 1-123 (411)
121 TIGR01777 yfcH conserved hypot 96.1 0.0045 1.2E-07 37.9 3.0 70 5-77 1-80 (307)
122 pfam03721 UDPG_MGDP_dh_N UDP-g 96.1 0.01 2.7E-07 35.7 4.8 68 3-75 1-86 (185)
123 PRK06392 homoserine dehydrogen 96.1 0.016 4.2E-07 34.5 5.7 94 3-97 1-118 (326)
124 PRK06522 2-dehydropantoate 2-r 96.1 0.11 2.7E-06 29.6 9.9 90 3-96 1-103 (307)
125 PRK06223 malate dehydrogenase; 96.1 0.031 8E-07 32.8 7.1 69 3-73 1-78 (312)
126 PRK09599 6-phosphogluconate de 96.1 0.0091 2.3E-07 36.0 4.3 89 3-98 1-97 (301)
127 TIGR01915 npdG NADPH-dependent 96.1 0.022 5.7E-07 33.7 6.3 98 3-100 1-116 (233)
128 COG2084 MmsB 3-hydroxyisobutyr 96.0 0.015 3.9E-07 34.7 5.3 90 3-98 1-98 (286)
129 pfam01370 Epimerase NAD depend 96.0 0.11 2.9E-06 29.4 9.9 25 5-29 1-25 (235)
130 PRK07531 bifunctional 3-hydrox 96.0 0.045 1.1E-06 31.8 7.5 96 1-100 1-119 (489)
131 PRK12921 2-dehydropantoate 2-r 96.0 0.11 2.9E-06 29.4 9.5 90 3-96 1-103 (306)
132 COG0451 WcaG Nucleoside-diphos 95.9 0.038 9.7E-07 32.3 6.7 33 3-38 1-33 (314)
133 PRK05808 3-hydroxybutyryl-CoA 95.8 0.048 1.2E-06 31.7 7.1 97 1-101 1-124 (282)
134 cd05291 HicDH_like L-2-hydroxy 95.7 0.038 9.7E-07 32.3 6.3 68 4-73 2-77 (306)
135 PRK09987 dTDP-4-dehydrorhamnos 95.6 0.1 2.6E-06 29.7 8.2 86 3-102 1-110 (299)
136 PRK09496 trkA potassium transp 95.6 0.024 6.2E-07 33.5 4.9 78 3-84 1-85 (455)
137 PRK12490 6-phosphogluconate de 95.6 0.023 5.7E-07 33.7 4.7 92 3-99 1-98 (298)
138 PTZ00117 malate dehydrogenase; 95.6 0.049 1.3E-06 31.6 6.3 69 1-73 1-78 (313)
139 cd01078 NAD_bind_H4MPT_DH NADP 95.5 0.12 3E-06 29.3 8.1 91 3-97 29-131 (194)
140 PRK04663 murD UDP-N-acetylmura 95.4 0.047 1.2E-06 31.7 5.8 88 1-92 7-96 (438)
141 PRK01368 murD UDP-N-acetylmura 95.3 0.025 6.3E-07 33.4 4.2 95 4-103 8-103 (450)
142 PRK10675 UDP-galactose-4-epime 95.3 0.023 5.7E-07 33.7 3.9 28 3-30 1-28 (338)
143 cd00650 LDH_MDH_like NAD-depen 95.2 0.074 1.9E-06 30.5 6.3 70 5-74 1-80 (263)
144 PRK12439 NAD(P)H-dependent gly 95.1 0.099 2.5E-06 29.8 6.7 92 3-98 7-113 (340)
145 pfam00899 ThiF ThiF family. Th 95.1 0.24 6.1E-06 27.4 8.5 90 3-95 2-123 (134)
146 PRK08306 dipicolinate synthase 95.1 0.025 6.5E-07 33.3 3.5 64 1-73 1-64 (296)
147 TIGR03589 PseB UDP-N-acetylglu 95.0 0.26 6.5E-06 27.3 9.5 112 3-115 5-144 (324)
148 PRK06129 3-hydroxyacyl-CoA deh 95.0 0.14 3.7E-06 28.8 7.3 95 1-100 2-123 (308)
149 cd05293 LDH_1 A subgroup of L- 95.0 0.1 2.6E-06 29.7 6.5 69 3-73 4-80 (312)
150 KOG2711 consensus 95.0 0.27 6.9E-06 27.1 9.4 104 1-105 20-149 (372)
151 COG5322 Predicted dehydrogenas 94.9 0.028 7E-07 33.1 3.4 24 73-96 89-115 (351)
152 PRK10217 dTDP-glucose 4,6-dehy 94.9 0.051 1.3E-06 31.5 4.7 26 1-27 1-26 (355)
153 PRK03369 murD UDP-N-acetylmura 94.8 0.065 1.7E-06 30.9 5.1 95 3-101 13-108 (487)
154 PRK08818 prephenate dehydrogen 94.8 0.23 5.8E-06 27.6 7.8 79 4-98 6-91 (373)
155 cd01489 Uba2_SUMO Ubiquitin ac 94.6 0.2 5E-06 27.9 7.2 108 4-113 1-139 (312)
156 PRK07660 consensus 94.6 0.12 3.1E-06 29.2 6.0 97 1-101 1-124 (283)
157 cd01488 Uba3_RUB Ubiquitin act 94.6 0.19 4.8E-06 28.1 6.9 107 4-112 1-144 (291)
158 pfam02670 DXP_reductoisom 1-de 94.5 0.097 2.5E-06 29.8 5.3 37 5-42 1-37 (129)
159 PRK07424 bifunctional sterol d 94.5 0.13 3.3E-06 29.0 6.0 66 4-73 182-256 (410)
160 PRK08293 3-hydroxybutyryl-CoA 94.5 0.14 3.6E-06 28.8 6.1 96 1-100 1-125 (288)
161 cd01483 E1_enzyme_family Super 94.5 0.29 7.3E-06 27.0 7.7 92 4-98 1-124 (143)
162 TIGR01772 MDH_euk_gproteo mala 94.4 0.12 3.1E-06 29.2 5.7 27 4-31 1-27 (379)
163 PRK06035 3-hydroxyacyl-CoA deh 94.3 0.047 1.2E-06 31.7 3.3 97 1-101 1-127 (291)
164 COG1090 Predicted nucleoside-d 94.2 0.048 1.2E-06 31.7 3.2 68 5-77 1-69 (297)
165 PTZ00082 L-lactate dehydrogena 94.1 0.29 7.3E-06 27.0 7.1 68 3-73 8-84 (322)
166 PRK04690 murD UDP-N-acetylmura 94.0 0.17 4.3E-06 28.4 5.8 87 4-93 10-98 (468)
167 TIGR02197 heptose_epim ADP-L-g 94.0 0.06 1.5E-06 31.1 3.5 104 5-115 1-145 (353)
168 PRK00683 murD UDP-N-acetylmura 94.0 0.08 2E-06 30.3 4.1 86 1-92 1-87 (418)
169 PRK12367 short chain dehydroge 93.8 0.45 1.1E-05 25.8 7.6 68 3-73 18-91 (250)
170 cd05290 LDH_3 A subgroup of L- 93.8 0.17 4.3E-06 28.4 5.4 68 4-73 1-77 (307)
171 PRK07530 3-hydroxybutyryl-CoA 93.8 0.14 3.5E-06 28.9 4.9 96 1-101 2-125 (292)
172 PRK07066 3-hydroxybutyryl-CoA 93.8 0.35 8.9E-06 26.4 7.0 93 4-100 9-124 (321)
173 pfam01073 3Beta_HSD 3-beta hyd 93.7 0.14 3.7E-06 28.8 5.0 29 7-36 2-30 (280)
174 PRK00045 hemA glutamyl-tRNA re 93.7 0.1 2.6E-06 29.7 4.1 22 4-26 184-205 (429)
175 KOG1203 consensus 93.7 0.065 1.7E-06 30.8 3.1 30 3-32 80-109 (411)
176 PRK05562 precorrin-2 dehydroge 93.6 0.27 7E-06 27.1 6.3 89 2-95 24-116 (222)
177 PRK01438 murD UDP-N-acetylmura 93.5 0.27 6.8E-06 27.1 6.0 87 3-93 15-106 (481)
178 cd01339 LDH-like_MDH L-lactate 93.5 0.18 4.7E-06 28.1 5.2 66 5-73 1-75 (300)
179 PRK10084 dTDP-glucose 4,6 dehy 93.5 0.16 4.1E-06 28.5 4.8 25 3-27 1-25 (352)
180 PRK00066 ldh L-lactate dehydro 93.4 0.26 6.6E-06 27.2 5.8 68 3-73 7-82 (315)
181 cd00757 ThiF_MoeB_HesA_family 93.3 0.37 9.4E-06 26.3 6.5 104 3-110 22-157 (228)
182 PRK08219 short chain dehydroge 93.3 0.13 3.3E-06 29.1 4.1 25 1-25 1-26 (226)
183 TIGR02717 AcCoA-syn-alpha acet 93.2 0.17 4.5E-06 28.3 4.7 90 4-99 9-103 (457)
184 KOG1494 consensus 93.2 0.21 5.3E-06 27.8 5.0 40 2-42 28-67 (345)
185 PRK06718 precorrin-2 dehydroge 93.2 0.29 7.4E-06 26.9 5.7 84 3-91 11-97 (202)
186 PRK09117 consensus 93.1 0.47 1.2E-05 25.7 6.8 93 4-101 4-123 (282)
187 COG3268 Uncharacterized conser 93.1 0.073 1.9E-06 30.6 2.6 156 2-170 6-184 (382)
188 PRK02006 murD UDP-N-acetylmura 93.1 0.44 1.1E-05 25.8 6.6 86 4-93 9-102 (501)
189 COG0771 MurD UDP-N-acetylmuram 93.0 0.17 4.4E-06 28.3 4.4 96 2-101 7-107 (448)
190 PRK03806 murD UDP-N-acetylmura 92.9 0.3 7.6E-06 26.8 5.5 86 3-93 7-94 (438)
191 TIGR02853 spore_dpaA dipicolin 92.8 0.11 2.9E-06 29.4 3.2 63 3-73 2-64 (288)
192 PRK09260 3-hydroxybutyryl-CoA 92.8 0.37 9.4E-06 26.3 5.9 97 1-101 1-124 (289)
193 cd05212 NAD_bind_m-THF_DH_Cycl 92.7 0.42 1.1E-05 25.9 6.1 75 3-98 29-103 (140)
194 PRK01710 murD UDP-N-acetylmura 92.7 0.27 6.8E-06 27.2 5.1 87 3-93 15-106 (458)
195 TIGR01214 rmlD dTDP-4-dehydror 92.7 0.11 2.8E-06 29.5 3.1 94 4-102 1-116 (317)
196 PRK00141 murD UDP-N-acetylmura 92.6 0.29 7.4E-06 26.9 5.2 85 3-92 18-104 (476)
197 COG2423 Predicted ornithine cy 92.5 0.16 4.2E-06 28.4 3.8 16 319-334 302-317 (330)
198 KOG1431 consensus 92.5 0.22 5.7E-06 27.6 4.4 37 3-39 2-38 (315)
199 cd00300 LDH_like L-lactate deh 92.5 0.4 1E-05 26.1 5.7 67 5-73 1-75 (300)
200 KOG1430 consensus 92.4 0.26 6.7E-06 27.2 4.7 33 3-36 5-37 (361)
201 COG0569 TrkA K+ transport syst 92.3 0.43 1.1E-05 25.9 5.7 94 3-100 1-106 (225)
202 PRK06395 phosphoribosylamine-- 92.3 0.58 1.5E-05 25.1 6.3 97 1-102 1-104 (435)
203 COG1893 ApbA Ketopantoate redu 92.3 0.59 1.5E-05 25.1 6.4 88 3-94 1-100 (307)
204 cd01490 Ube1_repeat2 Ubiquitin 92.2 0.83 2.1E-05 24.2 7.3 106 4-111 1-145 (435)
205 PRK01390 murD UDP-N-acetylmura 92.1 0.18 4.7E-06 28.1 3.6 84 4-93 11-98 (457)
206 TIGR01746 Thioester-redct thio 92.0 0.22 5.6E-06 27.7 3.9 91 4-97 1-107 (405)
207 PRK05690 molybdopterin biosynt 92.0 0.77 2E-05 24.3 6.7 91 3-96 33-155 (245)
208 COG1042 Acyl-CoA synthetase (N 92.0 0.37 9.4E-06 26.3 5.0 115 4-131 12-132 (598)
209 PRK11150 rfaD ADP-L-glycero-D- 91.6 0.98 2.5E-05 23.7 7.2 30 5-36 2-31 (308)
210 KOG2741 consensus 91.6 0.28 7.1E-06 27.0 4.1 88 1-92 5-100 (351)
211 pfam02423 OCD_Mu_crystall Orni 91.5 0.31 8E-06 26.7 4.2 20 314-335 290-309 (312)
212 pfam02737 3HCDH_N 3-hydroxyacy 91.5 0.62 1.6E-05 24.9 5.7 92 4-100 1-119 (180)
213 COG1232 HemY Protoporphyrinoge 91.5 0.64 1.6E-05 24.8 5.8 43 3-47 1-44 (444)
214 PRK06719 precorrin-2 dehydroge 91.4 1 2.6E-05 23.6 7.6 80 3-88 14-94 (157)
215 PRK07201 short chain dehydroge 91.4 0.21 5.3E-06 27.8 3.3 36 3-40 1-36 (663)
216 PRK07588 hypothetical protein; 91.0 0.56 1.4E-05 25.2 5.1 44 3-47 1-44 (391)
217 PRK04308 murD UDP-N-acetylmura 90.9 0.83 2.1E-05 24.1 6.0 88 1-93 1-96 (445)
218 PRK06847 hypothetical protein; 90.9 0.59 1.5E-05 25.0 5.2 25 4-29 6-30 (375)
219 PRK08328 hypothetical protein; 90.8 1.1 2.8E-05 23.4 6.4 107 3-111 28-165 (230)
220 PRK11064 wecC UDP-N-acetyl-D-m 90.7 0.39 9.8E-06 26.2 4.0 89 1-97 1-121 (415)
221 PRK06753 hypothetical protein; 90.6 0.51 1.3E-05 25.5 4.6 27 3-30 1-27 (373)
222 PRK06130 3-hydroxybutyryl-CoA 90.5 0.6 1.5E-05 25.0 4.9 92 4-100 7-119 (310)
223 KOG0685 consensus 90.3 1.3 3.3E-05 23.0 6.7 45 4-50 23-69 (498)
224 PRK07819 3-hydroxybutyryl-CoA 90.2 0.52 1.3E-05 25.4 4.4 93 4-101 4-124 (284)
225 pfam04321 RmlD_sub_bind RmlD s 90.0 0.45 1.2E-05 25.7 3.9 81 5-100 1-103 (284)
226 KOG1429 consensus 90.0 0.61 1.6E-05 24.9 4.6 30 3-32 28-57 (350)
227 PRK09897 hypothetical protein; 89.9 0.63 1.6E-05 24.9 4.6 45 1-48 1-45 (535)
228 PRK08268 3-hydroxybutyryl-CoA 89.5 0.85 2.2E-05 24.1 5.0 92 4-100 5-123 (503)
229 PRK12464 1-deoxy-D-xylulose 5- 89.4 0.85 2.2E-05 24.1 4.9 35 7-42 1-35 (392)
230 KOG2733 consensus 89.2 0.83 2.1E-05 24.1 4.8 138 3-147 6-163 (423)
231 pfam02882 THF_DHG_CYH_C Tetrah 89.2 1.3 3.3E-05 23.0 5.8 75 3-98 37-111 (159)
232 KOG2013 consensus 89.0 0.33 8.4E-06 26.6 2.6 93 3-96 13-136 (603)
233 PRK12416 protoporphyrinogen ox 88.8 1.6 4.2E-05 22.4 6.1 43 1-45 1-47 (466)
234 KOG1198 consensus 88.7 1.1 2.7E-05 23.5 5.0 93 3-98 159-260 (347)
235 pfam02558 ApbA Ketopantoate re 88.7 1.7 4.4E-05 22.2 10.1 88 5-96 1-101 (150)
236 PRK08291 ornithine cyclodeamin 88.6 0.79 2E-05 24.3 4.3 19 225-243 198-216 (330)
237 TIGR00243 Dxr 1-deoxy-D-xylulo 88.5 0.6 1.5E-05 25.0 3.7 41 1-46 2-42 (406)
238 pfam07993 NAD_binding_4 Male s 88.5 0.35 9E-06 26.4 2.5 30 7-37 1-30 (245)
239 COG1648 CysG Siroheme synthase 88.4 0.9 2.3E-05 23.9 4.5 82 3-90 13-99 (210)
240 PRK11728 hypothetical protein; 88.1 1.3 3.4E-05 22.9 5.3 35 1-37 1-35 (400)
241 TIGR03025 EPS_sugtrans exopoly 88.1 1.9 4.8E-05 22.0 6.7 92 3-98 126-225 (445)
242 pfam02153 PDH Prephenate dehyd 88.1 0.89 2.3E-05 24.0 4.3 71 26-98 8-82 (258)
243 PRK05868 hypothetical protein; 88.0 1.3 3.2E-05 23.1 5.0 46 1-48 1-46 (372)
244 PRK12409 D-amino acid dehydrog 87.9 1.3 3.4E-05 22.9 5.1 31 1-36 1-31 (410)
245 pfam02826 2-Hacid_dh_C D-isome 87.6 1.8 4.7E-05 22.1 5.7 83 3-95 37-125 (176)
246 COG0743 Dxr 1-deoxy-D-xylulose 87.6 1.4 3.6E-05 22.8 5.1 37 1-39 1-37 (385)
247 pfam02254 TrkA_N TrkA-N domain 87.5 2.1 5.3E-05 21.8 6.0 73 5-82 1-79 (115)
248 cd01492 Aos1_SUMO Ubiquitin ac 87.1 2.2 5.5E-05 21.6 7.1 97 3-101 22-147 (197)
249 PRK10124 putative UDP-glucose 87.0 1.5 3.8E-05 22.6 4.9 84 3-90 145-233 (464)
250 COG0373 HemA Glutamyl-tRNA red 86.9 0.6 1.5E-05 25.0 2.9 20 254-273 253-272 (414)
251 cd06533 Glyco_transf_WecG_TagA 86.8 1.4 3.6E-05 22.7 4.7 100 2-110 46-147 (171)
252 PRK07538 hypothetical protein; 86.7 1.5 3.9E-05 22.6 4.9 27 3-30 1-27 (413)
253 pfam03808 Glyco_tran_WecB Glyc 86.5 1.3 3.3E-05 23.0 4.4 97 3-109 49-148 (172)
254 PRK03803 murD UDP-N-acetylmura 86.5 2.2 5.5E-05 21.6 5.6 86 4-93 9-98 (448)
255 COG0111 SerA Phosphoglycerate 86.3 1.5 3.8E-05 22.6 4.6 14 254-267 238-251 (324)
256 PRK09009 C factor cell-cell si 86.1 2 5.1E-05 21.8 5.2 31 3-34 1-31 (235)
257 cd01080 NAD_bind_m-THF_DH_Cycl 85.9 2 5.2E-05 21.8 5.2 75 3-98 45-119 (168)
258 pfam00070 Pyr_redox Pyridine n 85.8 2.5 6.4E-05 21.2 6.5 66 4-100 1-66 (82)
259 PRK06407 ornithine cyclodeamin 85.6 1.6 4.1E-05 22.4 4.6 18 225-242 184-201 (302)
260 TIGR00065 ftsZ cell division p 85.6 2.4 6.1E-05 21.4 5.4 98 2-100 17-149 (365)
261 PRK04965 nitric oxide reductas 85.6 1.5 3.7E-05 22.7 4.3 37 1-39 1-37 (378)
262 PRK07608 hypothetical protein; 85.6 1.1 2.8E-05 23.4 3.7 28 1-29 4-31 (389)
263 PRK03815 murD UDP-N-acetylmura 85.6 1.6 4.2E-05 22.4 4.5 62 3-72 1-62 (401)
264 cd05197 GH4_glycoside_hydrolas 85.5 1.4 3.7E-05 22.7 4.2 70 3-72 1-82 (425)
265 PRK12862 malic enzyme; Reviewe 85.5 2.6 6.7E-05 21.1 5.6 92 3-96 193-292 (761)
266 PRK08163 salicylate hydroxylas 85.4 2.1 5.3E-05 21.7 5.0 29 1-30 1-31 (396)
267 COG1252 Ndh NADH dehydrogenase 85.3 1.7 4.4E-05 22.2 4.6 36 1-38 2-37 (405)
268 cd05298 GH4_GlvA_pagL_like Gly 85.3 1.6 4.1E-05 22.4 4.4 87 3-89 1-102 (437)
269 PRK09466 metL bifunctional asp 85.2 2.7 6.9E-05 21.0 6.2 93 2-95 458-572 (810)
270 PRK12475 thiamine/molybdopteri 85.0 2.8 7E-05 21.0 9.5 137 3-143 25-193 (337)
271 PRK08605 D-lactate dehydrogena 85.0 1.7 4.3E-05 22.3 4.4 76 3-97 2-78 (332)
272 PRK07232 malic enzyme; Reviewe 84.9 2.8 7.2E-05 20.9 6.5 92 3-96 187-286 (753)
273 PRK06823 ornithine cyclodeamin 84.8 1.3 3.3E-05 23.0 3.8 20 225-244 193-212 (315)
274 PRK00258 aroE shikimate 5-dehy 84.5 1.4 3.5E-05 22.8 3.8 14 125-138 127-140 (275)
275 TIGR03219 salicylate_mono sali 84.4 1.9 4.8E-05 22.0 4.4 30 3-35 1-30 (414)
276 smart00829 PKS_ER Enoylreducta 84.3 2.5 6.3E-05 21.3 5.0 11 62-72 45-55 (288)
277 PRK08849 2-octaprenyl-3-methyl 84.3 1.4 3.5E-05 22.8 3.7 29 1-30 1-30 (384)
278 COG4529 Uncharacterized protei 84.2 2.2 5.6E-05 21.6 4.7 45 3-48 2-46 (474)
279 TIGR00872 gnd_rel 6-phosphoglu 84.1 2.7 7E-05 21.0 5.1 92 3-98 1-99 (341)
280 cd05297 GH4_alpha_glucosidase_ 84.1 1.8 4.5E-05 22.2 4.1 70 3-72 1-82 (423)
281 TIGR02992 ectoine_eutC ectoine 83.9 0.57 1.5E-05 25.1 1.6 106 4-120 131-242 (326)
282 PRK06101 short chain dehydroge 83.9 2.8 7.3E-05 20.9 5.1 33 1-37 1-33 (241)
283 TIGR02964 xanthine_xdhC xanthi 83.8 2.1 5.2E-05 21.8 4.4 35 3-40 116-150 (270)
284 KOG1276 consensus 83.8 3.1 8E-05 20.7 6.2 44 1-46 10-54 (491)
285 COG1105 FruK Fructose-1-phosph 83.6 3.2 8.1E-05 20.6 5.9 139 5-154 56-221 (310)
286 cd02191 FtsZ FtsZ is a GTPase 83.6 3.2 8.1E-05 20.6 6.0 98 4-102 2-129 (303)
287 PRK08618 ornithine cyclodeamin 83.3 1.6 4.1E-05 22.4 3.7 18 225-242 193-210 (325)
288 PRK13243 glyoxylate reductase; 82.7 1.3 3.2E-05 23.1 2.9 72 1-97 1-76 (333)
289 PRK06141 ornithine cyclodeamin 82.5 1.9 4.7E-05 22.0 3.8 21 313-335 291-311 (313)
290 PRK06182 short chain dehydroge 82.4 3.5 9E-05 20.3 5.6 29 1-29 1-30 (273)
291 PRK05732 2-octaprenyl-6-methox 82.4 2.5 6.4E-05 21.3 4.4 35 1-36 1-36 (395)
292 PRK00711 D-amino acid dehydrog 82.3 3.5 8.9E-05 20.4 5.1 26 3-29 1-26 (416)
293 PRK13984 putative oxidoreducta 82.2 3.6 9.2E-05 20.3 5.2 40 3-46 284-323 (604)
294 cd05295 MDH_like Malate dehydr 82.2 3.4 8.6E-05 20.5 5.0 69 3-71 124-206 (452)
295 COG1486 CelF Alpha-galactosida 82.1 3.1 7.8E-05 20.7 4.8 72 1-72 2-85 (442)
296 PRK07236 hypothetical protein; 82.0 1.9 4.7E-05 22.0 3.6 26 3-29 7-32 (386)
297 PRK10637 cysG siroheme synthas 81.8 3.7 9.5E-05 20.2 6.1 93 3-99 13-112 (457)
298 TIGR01181 dTDP_gluc_dehyt dTDP 81.7 1.2 3.1E-05 23.2 2.5 38 4-43 1-39 (340)
299 COG0604 Qor NADPH:quinone redu 81.6 3.8 9.6E-05 20.2 7.8 22 4-25 145-166 (326)
300 COG0654 UbiH 2-polyprenyl-6-me 81.6 2.4 6.2E-05 21.3 4.1 28 1-29 1-28 (387)
301 PRK06436 glycerate dehydrogena 81.6 3.8 9.7E-05 20.2 5.6 14 254-267 214-227 (303)
302 PRK09126 hypothetical protein; 81.6 2.1 5.3E-05 21.7 3.7 29 1-30 2-30 (392)
303 cd05568 PTS_IIB_bgl_like PTS_I 81.0 2.1 5.2E-05 21.8 3.5 69 3-97 1-69 (85)
304 cd01065 NAD_bind_Shikimate_DH 80.7 2 5.2E-05 21.8 3.5 69 4-76 21-93 (155)
305 PRK06199 ornithine cyclodeamin 80.7 2.2 5.6E-05 21.6 3.6 63 37-112 50-112 (379)
306 pfam02719 Polysacc_synt_2 Poly 80.7 4.1 0.0001 20.0 9.4 30 5-36 1-30 (280)
307 cd01487 E1_ThiF_like E1_ThiF_l 80.7 4.1 0.0001 20.0 8.4 90 4-96 1-122 (174)
308 PRK09414 glutamate dehydrogena 80.6 4.1 0.00011 19.9 6.3 14 250-263 321-334 (446)
309 TIGR01087 murD UDP-N-acetylmur 80.3 3.5 8.8E-05 20.4 4.5 96 4-102 1-105 (476)
310 cd05313 NAD_bind_2_Glu_DH NAD( 80.2 4.2 0.00011 19.9 6.1 89 3-97 39-155 (254)
311 PTZ00079 NADP-specific glutama 80.0 4.3 0.00011 19.8 6.4 12 315-326 446-457 (469)
312 PRK07578 short chain dehydroge 79.9 4.3 0.00011 19.8 5.3 23 3-25 1-23 (199)
313 KOG1399 consensus 79.9 2.4 6E-05 21.4 3.6 29 1-30 5-33 (448)
314 PRK07045 putative monooxygenas 79.9 3.7 9.3E-05 20.2 4.5 27 3-30 6-32 (388)
315 KOG3923 consensus 79.7 2.8 7.3E-05 20.9 3.9 37 1-38 2-42 (342)
316 PRK05693 short chain dehydroge 79.7 4.4 0.00011 19.8 5.5 26 3-28 1-27 (274)
317 PRK07574 formate dehydrogenase 79.5 3 7.6E-05 20.8 4.0 27 61-87 87-115 (385)
318 PRK08243 4-hydroxybenzoate 3-m 79.4 2.9 7.3E-05 20.9 3.8 31 1-32 1-31 (392)
319 PRK08410 2-hydroxyacid dehydro 79.2 3.7 9.5E-05 20.2 4.4 72 3-97 1-72 (311)
320 PRK07688 thiamine/molybdopteri 79.2 4.6 0.00012 19.7 8.6 137 3-142 25-193 (339)
321 TIGR02360 pbenz_hydroxyl 4-hyd 79.0 3.2 8.1E-05 20.6 4.0 98 1-100 1-129 (393)
322 pfam06408 consensus 78.9 4.7 0.00012 19.6 5.2 91 4-95 3-107 (471)
323 cd05296 GH4_P_beta_glucosidase 78.8 3.6 9.2E-05 20.3 4.2 70 3-72 1-83 (419)
324 PRK08125 bifunctional UDP-gluc 78.8 4.7 0.00012 19.6 5.1 31 4-36 317-347 (660)
325 PRK07454 short chain dehydroge 78.8 2.8 7.1E-05 21.0 3.6 32 3-37 6-38 (241)
326 PRK06617 2-octaprenyl-6-methox 78.8 3.1 7.9E-05 20.7 3.9 31 1-36 1-31 (374)
327 COG1086 Predicted nucleoside-d 78.5 2.8 7.1E-05 21.0 3.5 90 3-99 117-215 (588)
328 TIGR01381 E1_like_apg7 E1-like 78.4 1.5 3.8E-05 22.6 2.1 95 3-101 349-494 (689)
329 KOG2666 consensus 78.4 4.8 0.00012 19.6 4.7 68 3-72 2-86 (481)
330 KOG2380 consensus 78.4 4.8 0.00012 19.5 5.5 90 3-98 53-146 (480)
331 PRK09436 thrA bifunctional asp 78.2 4.9 0.00012 19.5 6.4 92 2-94 465-577 (817)
332 PRK09310 aroDE bifunctional 3- 78.1 2.8 7.1E-05 21.0 3.5 12 71-82 88-99 (477)
333 TIGR00956 3a01205 Pleiotropic 78.0 0.84 2.1E-05 24.1 0.8 43 130-172 830-875 (1466)
334 pfam01262 AlaDh_PNT_C Alanine 77.9 4.6 0.00012 19.6 4.5 92 3-99 21-125 (150)
335 PRK09564 coenzyme A disulfide 77.7 5.1 0.00013 19.4 7.8 33 3-37 1-33 (443)
336 TIGR03443 alpha_am_amid L-amin 77.5 4.9 0.00012 19.5 4.6 16 318-333 878-893 (1389)
337 PRK06487 glycerate dehydrogena 77.4 5.2 0.00013 19.3 5.7 33 62-97 43-75 (317)
338 PRK06180 short chain dehydroge 77.3 3.2 8.1E-05 20.6 3.6 28 1-28 1-30 (277)
339 COG0644 FixC Dehydrogenases (f 77.3 5.2 0.00013 19.3 5.0 40 1-44 2-41 (396)
340 PRK13512 coenzyme A disulfide 77.0 4.9 0.00013 19.5 4.5 36 1-39 1-36 (438)
341 COG0665 DadA Glycine/D-amino a 77.0 5.3 0.00014 19.3 5.4 32 1-36 3-34 (387)
342 TIGR01759 MalateDH-SF1 malate 76.9 5.3 0.00014 19.3 5.3 121 3-138 4-140 (329)
343 PRK08774 consensus 76.7 3.5 8.9E-05 20.4 3.6 28 1-29 1-30 (402)
344 PRK07707 consensus 76.7 3.6 9.1E-05 20.3 3.7 27 1-28 1-28 (239)
345 TIGR00455 apsK adenylylsulfate 76.6 1.6 4E-05 22.5 1.9 89 156-273 24-125 (187)
346 PRK01911 ppnK inorganic polyph 76.6 5.5 0.00014 19.2 4.9 88 3-95 1-93 (290)
347 cd01079 NAD_bind_m-THF_DH NAD 76.5 5.5 0.00014 19.2 5.7 92 3-100 63-161 (197)
348 PRK09140 2-dehydro-3-deoxy-6-p 76.2 1.8 4.7E-05 22.1 2.1 104 5-136 13-117 (206)
349 PRK08013 hypothetical protein; 76.2 3.8 9.6E-05 20.2 3.7 28 1-29 1-29 (400)
350 PRK11259 solA N-methyltryptoph 76.1 5.6 0.00014 19.1 4.5 29 1-30 2-30 (377)
351 pfam00743 FMO-like Flavin-bind 76.0 5.6 0.00014 19.1 4.8 40 3-46 2-41 (532)
352 PRK05714 2-octaprenyl-3-methyl 76.0 3.7 9.5E-05 20.2 3.6 28 1-29 1-28 (405)
353 KOG2742 consensus 75.9 0.8 2E-05 24.3 0.2 91 1-97 1-96 (367)
354 KOG2015 consensus 75.8 5.7 0.00015 19.1 5.5 130 1-134 39-210 (422)
355 COG0761 lytB 4-Hydroxy-3-methy 75.8 1.8 4.6E-05 22.1 2.0 92 3-98 2-99 (294)
356 KOG0069 consensus 75.7 5.8 0.00015 19.1 5.2 16 253-268 257-272 (336)
357 cd02201 FtsZ_type1 FtsZ is a G 75.6 5.8 0.00015 19.0 6.1 98 3-101 1-128 (304)
358 COG5495 Uncharacterized conser 75.5 5.1 0.00013 19.4 4.2 89 2-98 10-102 (289)
359 COG3349 Uncharacterized conser 75.3 5.9 0.00015 19.0 4.7 37 3-43 1-38 (485)
360 PRK10792 bifunctional 5,10-met 75.2 5.9 0.00015 19.0 4.6 23 127-149 134-156 (288)
361 TIGR03169 Nterm_to_SelD pyridi 75.2 4.5 0.00012 19.7 3.9 35 4-39 1-35 (364)
362 TIGR01179 galE UDP-glucose 4-e 75.1 2.4 6.1E-05 21.4 2.4 102 4-112 1-137 (341)
363 TIGR00507 aroE shikimate 5-deh 75.1 3.2 8.2E-05 20.6 3.1 93 3-98 122-229 (286)
364 COG0300 DltE Short-chain dehyd 74.8 4.8 0.00012 19.6 3.9 34 3-39 7-40 (265)
365 PRK08118 topology modulation p 74.6 4.1 0.0001 19.9 3.6 34 1-35 1-35 (167)
366 TIGR02817 adh_fam_1 zinc-bindi 74.2 6.1 0.00015 18.9 4.3 95 2-98 151-254 (338)
367 PRK06932 glycerate dehydrogena 74.1 5.4 0.00014 19.2 4.1 33 62-97 42-74 (314)
368 PRK07261 topology modulation p 73.9 4.4 0.00011 19.7 3.6 33 3-35 1-34 (171)
369 PRK07340 ornithine cyclodeamin 73.9 2.8 7.1E-05 21.0 2.5 15 226-240 190-204 (304)
370 TIGR01771 L-LDH-NAD L-lactate 73.6 4.8 0.00012 19.5 3.7 68 7-76 1-77 (302)
371 cd04510 consensus 73.5 6.5 0.00017 18.7 6.2 70 3-72 2-85 (334)
372 COG0677 WecC UDP-N-acetyl-D-ma 73.4 3.8 9.8E-05 20.1 3.2 97 1-99 8-132 (436)
373 TIGR01988 Ubi-OHases Ubiquinon 73.4 5 0.00013 19.4 3.7 34 4-38 1-36 (445)
374 COG1832 Predicted CoA-binding 73.3 4.5 0.00012 19.7 3.5 81 4-92 18-101 (140)
375 PRK07102 short chain dehydroge 73.3 5 0.00013 19.4 3.7 34 1-38 1-34 (243)
376 COG1087 GalE UDP-glucose 4-epi 73.2 5.9 0.00015 19.0 4.1 222 3-268 1-272 (329)
377 TIGR00421 ubiX_pad polyprenyl 73.2 4.6 0.00012 19.6 3.5 33 4-39 3-36 (181)
378 PRK12480 D-lactate dehydrogena 73.2 6.6 0.00017 18.7 5.2 75 1-97 1-78 (330)
379 PRK07208 hypothetical protein; 73.0 6.7 0.00017 18.6 6.3 38 1-42 2-40 (474)
380 PRK06720 hypothetical protein; 73.0 6.7 0.00017 18.6 5.5 30 4-36 17-47 (169)
381 PRK07364 2-octaprenyl-6-methox 72.8 5.3 0.00013 19.3 3.7 29 1-30 16-44 (413)
382 TIGR01421 gluta_reduc_1 glutat 72.4 2.8 7.2E-05 20.9 2.3 22 1-23 180-201 (475)
383 PRK08850 2-octaprenyl-6-methox 72.2 5.6 0.00014 19.1 3.8 26 3-29 5-30 (405)
384 TIGR03013 EpsB_2 sugar transfe 72.2 7 0.00018 18.5 6.0 93 3-98 125-223 (442)
385 COG1052 LdhA Lactate dehydroge 72.1 7.1 0.00018 18.5 5.1 37 59-97 39-75 (324)
386 PRK02472 murD UDP-N-acetylmura 71.4 3.1 7.9E-05 20.7 2.3 86 4-93 11-101 (450)
387 COG1023 Gnd Predicted 6-phosph 71.3 6.5 0.00017 18.7 3.9 91 3-98 1-97 (300)
388 PRK06834 hypothetical protein; 71.3 6.1 0.00016 18.9 3.8 29 1-30 1-30 (488)
389 PRK06046 alanine dehydrogenase 70.8 4.1 0.0001 20.0 2.8 19 225-243 194-212 (326)
390 TIGR01763 MalateDH_bact malate 70.8 7.6 0.00019 18.3 5.9 52 3-60 2-54 (308)
391 TIGR02053 MerA mercuric reduct 70.8 4.5 0.00011 19.7 3.0 30 1-35 181-210 (494)
392 PRK08020 ubiF 2-octaprenyl-3-m 70.7 6.6 0.00017 18.7 3.9 28 1-29 1-31 (391)
393 KOG0409 consensus 70.5 7 0.00018 18.5 3.9 89 3-97 36-132 (327)
394 PRK07494 2-octaprenyl-6-methox 70.5 6.6 0.00017 18.7 3.8 27 3-30 6-32 (386)
395 PRK09730 hypothetical protein; 70.2 5.4 0.00014 19.2 3.3 25 3-27 1-26 (247)
396 PRK03659 glutathione-regulated 69.6 4 0.0001 20.0 2.5 75 4-86 402-487 (602)
397 KOG0455 consensus 69.4 8.1 0.00021 18.2 7.6 39 1-40 1-46 (364)
398 cd01075 NAD_bind_Leu_Phe_Val_D 69.4 8.1 0.00021 18.2 4.4 76 3-85 29-107 (200)
399 PRK00257 erythronate-4-phospha 69.4 8.1 0.00021 18.2 4.1 61 3-74 117-177 (379)
400 TIGR00877 purD phosphoribosyla 69.1 8.2 0.00021 18.1 6.1 105 3-111 1-125 (459)
401 PRK05993 short chain dehydroge 69.0 8.2 0.00021 18.1 4.4 29 1-29 1-31 (277)
402 PRK07024 short chain dehydroge 69.0 7.3 0.00019 18.4 3.8 34 1-37 1-34 (256)
403 PRK11883 protoporphyrinogen ox 69.0 8.3 0.00021 18.1 5.6 38 4-43 2-40 (452)
404 pfam02056 Glyco_hydro_4 Family 68.9 7.2 0.00018 18.5 3.7 69 4-72 1-81 (183)
405 TIGR03570 NeuD_NnaD sugar O-ac 68.9 8.3 0.00021 18.1 7.3 85 4-94 1-89 (201)
406 PRK12769 putative oxidoreducta 68.7 8.4 0.00021 18.1 5.1 41 3-47 328-368 (654)
407 COG0190 FolD 5,10-methylene-te 68.5 8.4 0.00022 18.0 4.6 44 124-170 128-175 (283)
408 PRK05597 molybdopterin biosynt 68.4 8.5 0.00022 18.0 8.3 135 3-139 29-194 (355)
409 KOG2337 consensus 68.3 3 7.5E-05 20.8 1.7 59 88-155 298-371 (669)
410 PRK06179 short chain dehydroge 68.2 8.6 0.00022 18.0 6.4 29 1-29 1-31 (270)
411 pfam01494 FAD_binding_3 FAD bi 68.1 8.6 0.00022 18.0 4.7 27 3-30 2-28 (349)
412 TIGR01350 lipoamide_DH dihydro 67.8 8.7 0.00022 18.0 6.7 80 3-113 179-263 (481)
413 PRK06217 hypothetical protein; 67.8 7.3 0.00019 18.4 3.6 33 1-34 1-34 (185)
414 pfam02963 EcoRI Restriction en 67.4 8.9 0.00023 17.9 6.1 11 236-246 165-175 (257)
415 TIGR01789 lycopene_cycl lycope 67.2 9 0.00023 17.9 6.4 92 4-97 1-117 (392)
416 TIGR03023 WcaJ_sugtrans Undeca 66.6 9.2 0.00024 17.8 6.6 91 3-97 129-227 (451)
417 TIGR03385 CoA_CoA_reduc CoA-di 66.5 9.3 0.00024 17.8 7.0 28 4-35 139-166 (427)
418 TIGR03366 HpnZ_proposed putati 66.2 9.4 0.00024 17.8 6.8 22 29-50 7-31 (280)
419 PRK09754 phenylpropionate diox 66.2 9.4 0.00024 17.8 4.7 38 1-40 1-39 (400)
420 PRK13789 phosphoribosylamine-- 65.6 9.7 0.00025 17.7 8.5 98 1-102 3-107 (426)
421 PRK07233 hypothetical protein; 65.6 9.7 0.00025 17.7 5.2 37 4-44 1-38 (430)
422 PRK12320 hypothetical protein; 65.5 9.7 0.00025 17.7 6.7 89 3-97 1-103 (699)
423 PRK12824 acetoacetyl-CoA reduc 65.1 9.6 0.00024 17.7 3.8 26 1-27 1-27 (245)
424 PRK08643 acetoin reductase; Va 65.1 9.9 0.00025 17.6 6.3 32 1-36 1-33 (256)
425 cd00755 YgdL_like Family of ac 65.0 9.9 0.00025 17.6 5.0 98 3-103 12-143 (231)
426 PTZ00142 6-phosphogluconate de 64.1 10 0.00026 17.5 4.1 155 3-164 6-183 (474)
427 TIGR01035 hemA glutamyl-tRNA r 63.9 10 0.00027 17.5 4.0 90 3-97 186-295 (436)
428 COG1064 AdhP Zn-dependent alco 63.9 10 0.00027 17.5 7.2 13 253-265 239-251 (339)
429 PRK11749 putative oxidoreducta 63.8 10 0.00027 17.5 5.5 41 3-47 141-181 (460)
430 PRK10294 6-phosphofructokinase 63.7 11 0.00027 17.5 9.6 141 5-154 58-224 (309)
431 COG3320 Putative dehydrogenase 63.6 11 0.00027 17.5 4.2 31 3-35 1-31 (382)
432 TIGR03127 RuMP_HxlB 6-phospho 63.3 11 0.00027 17.4 4.4 85 4-110 32-125 (179)
433 PRK12810 gltD glutamate syntha 63.2 11 0.00027 17.4 5.5 40 3-46 144-183 (472)
434 PRK12814 putative NADPH-depend 63.1 11 0.00027 17.4 5.0 72 3-78 194-292 (652)
435 PRK09330 cell division protein 63.0 11 0.00028 17.4 6.0 98 3-101 13-140 (387)
436 PRK01372 ddl D-alanine--D-alan 63.0 11 0.00028 17.4 4.4 64 1-83 3-80 (304)
437 PRK06029 3-octaprenyl-4-hydrox 62.9 11 0.00028 17.4 4.1 37 1-39 1-39 (187)
438 PRK06924 short chain dehydroge 62.7 9.4 0.00024 17.8 3.3 31 3-36 1-32 (251)
439 PRK13018 cell division protein 62.5 11 0.00028 17.3 5.5 98 3-101 28-155 (387)
440 PRK06475 salicylate hydroxylas 62.4 11 0.00028 17.3 4.5 27 3-30 3-29 (400)
441 PRK00421 murC UDP-N-acetylmura 62.1 11 0.00029 17.3 4.8 84 4-94 10-97 (459)
442 cd05005 SIS_PHI Hexulose-6-pho 61.9 11 0.00029 17.3 4.1 85 4-110 35-128 (179)
443 PRK12743 acetoin dehydrogenase 61.2 12 0.0003 17.2 3.6 26 1-27 1-27 (253)
444 PRK08773 2-octaprenyl-3-methyl 61.2 12 0.0003 17.2 3.6 26 3-29 7-32 (392)
445 COG0281 SfcA Malic enzyme [Ene 61.1 12 0.0003 17.2 6.0 10 159-168 204-213 (432)
446 KOG1221 consensus 61.0 12 0.0003 17.2 4.2 31 4-35 14-45 (467)
447 PRK12550 shikimate 5-dehydroge 60.9 5.8 0.00015 19.0 2.0 17 5-21 13-29 (272)
448 PRK12809 putative oxidoreducta 60.5 12 0.00031 17.1 6.6 41 3-47 311-351 (639)
449 PRK12861 malic enzyme; Reviewe 60.0 12 0.00031 17.1 5.7 91 3-95 188-286 (762)
450 PRK06113 7-alpha-hydroxysteroi 59.7 12 0.00032 17.0 5.9 24 4-27 12-36 (255)
451 PRK00742 chemotaxis-specific m 59.1 7.3 0.00019 18.4 2.3 56 1-58 1-57 (345)
452 PRK13508 tagatose-6-phosphate 58.8 13 0.00033 16.9 8.9 139 4-154 55-221 (309)
453 COG0579 Predicted dehydrogenas 58.3 13 0.00033 16.9 5.2 33 1-35 2-34 (429)
454 PRK06552 keto-hydroxyglutarate 58.0 6.7 0.00017 18.6 1.9 52 72-137 72-123 (209)
455 PRK12771 putative glutamate sy 57.8 13 0.00034 16.8 5.5 72 3-78 138-236 (560)
456 PRK05865 hypothetical protein; 57.8 13 0.00034 16.8 5.1 91 3-99 1-106 (854)
457 PRK07114 keto-hydroxyglutarate 57.4 4.2 0.00011 19.9 0.8 53 71-137 75-127 (223)
458 COG0163 UbiX 3-polyprenyl-4-hy 57.3 14 0.00035 16.8 4.6 35 2-39 4-39 (191)
459 PRK08244 hypothetical protein; 56.5 14 0.00036 16.7 4.7 31 1-32 1-31 (494)
460 KOG3124 consensus 56.4 14 0.00036 16.7 4.5 159 3-166 1-176 (267)
461 PRK06123 short chain dehydroge 56.3 14 0.00036 16.7 3.6 28 1-28 1-29 (249)
462 PRK06185 hypothetical protein; 56.0 14 0.00036 16.7 3.7 27 3-30 7-33 (409)
463 KOG2614 consensus 55.2 15 0.00038 16.6 5.0 45 1-46 1-45 (420)
464 PRK01747 mnmC 5-methylaminomet 54.3 14 0.00035 16.8 3.0 25 4-29 258-282 (660)
465 PRK08762 molybdopterin biosynt 53.7 16 0.0004 16.4 6.8 37 63-99 57-94 (379)
466 cd01076 NAD_bind_1_Glu_DH NAD( 53.2 16 0.00041 16.4 5.7 78 3-84 32-127 (227)
467 cd03360 LbH_AT_putative Putati 52.6 16 0.00041 16.3 5.9 83 7-93 1-85 (197)
468 KOG1412 consensus 52.5 4.3 0.00011 19.8 0.2 75 89-165 30-112 (410)
469 PRK05599 hypothetical protein; 52.1 17 0.00042 16.3 4.8 33 3-39 1-33 (246)
470 PRK02705 murD UDP-N-acetylmura 51.5 8.5 0.00022 18.0 1.6 83 6-92 4-96 (459)
471 COG0063 Predicted sugar kinase 51.2 17 0.00044 16.2 5.5 91 4-96 34-138 (284)
472 PRK00081 coaE dephospho-CoA ki 51.1 17 0.00044 16.2 3.9 31 1-31 1-31 (199)
473 PRK05920 aromatic acid decarbo 50.9 17 0.00044 16.2 4.7 33 4-39 8-41 (205)
474 PRK07411 hypothetical protein; 50.7 17 0.00044 16.1 6.6 100 3-104 39-168 (390)
475 PRK12384 sorbitol-6-phosphate 50.7 17 0.00044 16.1 3.6 32 1-36 1-33 (259)
476 PRK12557 H(2)-dependent methyl 50.5 10 0.00026 17.6 1.8 139 3-164 1-151 (341)
477 PRK13581 D-3-phosphoglycerate 49.4 18 0.00047 16.0 3.4 84 3-95 139-228 (524)
478 PRK07479 consensus 49.4 18 0.00047 16.0 6.0 33 1-36 1-36 (252)
479 PRK13748 putative mercuric red 48.7 19 0.00048 15.9 3.1 22 3-25 99-120 (561)
480 cd05211 NAD_bind_Glu_Leu_Phe_V 47.7 19 0.0005 15.8 6.6 109 3-129 24-149 (217)
481 PRK11154 fadJ multifunctional 47.3 20 0.0005 15.8 6.5 93 4-100 311-430 (706)
482 TIGR03452 mycothione_red mycot 46.8 20 0.00051 15.8 3.1 17 3-20 3-19 (452)
483 TIGR03329 Phn_aa_oxid putative 46.6 20 0.00051 15.7 4.2 31 3-35 25-55 (460)
484 COG0169 AroE Shikimate 5-dehyd 46.3 16 0.00041 16.4 2.3 27 124-154 130-156 (283)
485 PRK08017 short chain dehydroge 45.8 21 0.00053 15.7 4.7 28 1-28 1-28 (256)
486 COG2907 Predicted NAD/FAD-bind 45.7 21 0.00053 15.7 3.2 31 3-38 9-39 (447)
487 cd05191 NAD_bind_amino_acid_DH 45.6 21 0.00053 15.6 5.5 62 3-95 24-86 (86)
488 PRK09134 short chain dehydroge 45.6 21 0.00053 15.6 3.6 24 4-27 10-34 (256)
489 PRK12742 oxidoreductase; Provi 45.3 21 0.00054 15.6 4.1 24 4-27 8-31 (237)
490 PRK07060 short chain dehydroge 45.3 21 0.00054 15.6 5.5 29 5-36 12-40 (245)
491 PRK09424 pntA NAD(P) transhydr 45.0 21 0.00055 15.6 5.6 12 38-49 36-47 (510)
492 PRK06953 short chain dehydroge 44.7 22 0.00055 15.6 4.4 26 1-27 1-26 (222)
493 COG4091 Predicted homoserine d 44.4 22 0.00056 15.5 5.9 87 3-92 18-130 (438)
494 pfam10100 DUF2338 Uncharacteri 44.1 22 0.00056 15.5 7.8 142 4-155 27-201 (429)
495 PRK10279 hypothetical protein; 44.1 22 0.00056 15.5 3.3 33 1-33 1-38 (300)
496 TIGR02151 IPP_isom_2 isopenten 43.5 10 0.00025 17.6 0.9 26 72-97 196-221 (349)
497 PRK05653 fabG 3-ketoacyl-(acyl 43.3 23 0.00058 15.4 5.8 90 1-131 1-93 (246)
498 pfam00208 ELFV_dehydrog Glutam 43.1 23 0.00058 15.4 6.6 113 4-134 34-167 (237)
499 PRK12938 acetyacetyl-CoA reduc 42.8 23 0.00059 15.4 3.6 30 1-30 1-31 (246)
500 PRK06171 sorbitol-6-phosphate 42.8 23 0.00059 15.4 2.8 70 4-73 10-86 (266)
No 1
>PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=100.00 E-value=0 Score=696.59 Aligned_cols=334 Identities=50% Similarity=0.752 Sum_probs=324.7
Q ss_pred CCEEEEEECCCCHHHHHHHHHHHHCCCCEEEEEEEECCCCCCEEEECCCCEEEEEECCHHHHCCCCEEEECCCHHHHHHH
Q ss_conf 96179998166778999999997449980789999747658756002781589987794363188478606875899999
Q gi|254780307|r 1 MTFKVAVVGATGNVGREMLNIICERGFPISEVVALASERSAGTKVPFGKETIDVQDVKSYDFSDTDICLMSAGHAVSSQM 80 (335)
Q Consensus 1 M~~kvaIiGatG~vG~el~~lL~~~~~p~~~l~~~~s~~~~G~~i~~~~~~~~~~~~~~~~~~~~Divf~a~p~~~s~~~ 80 (335)
|.+||||+|||||||+||+++|++|+||++++.+++|++++|+.+.|.++++.+++++.++|+++|++|||+|+++|+++
T Consensus 1 mm~kVaIvGATG~vG~eli~lL~~~~~p~~~i~~~aS~~s~G~~~~~~~~~~~~~~~~~~~~~~~Di~f~a~~~~~s~~~ 80 (348)
T PRK06598 1 MMYNVGVVGATGMVGSVLLQMLEERDFPVIEPVFFASSRSGGKAPSFGGKTLLVDALDIEDLKGLDIALFSAGGDYSKEV 80 (348)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCEECCCEEEEEECCHHHHHCCCEEEECCCCHHHHHH
T ss_conf 98479998984599999999998679996249999875668987506895547862785576079999986882356888
Q ss_pred HHHHCCCCEEEEECCCCHHCCCCCCCCCCCHHHHHHCCCCCCCEECCCCCCCCCCCCCCCHHHHCCCCCCEEEEECCCCC
Q ss_conf 97504565179961451001121112364101111103334312126764322211122001101787411465215221
Q gi|254780307|r 81 SPKIAANGCIVIDNSSAWRYDSDVPLIVPEVNPQTISLASRKNIIANPNCSTIQLVVALKPLHDLAMIKRVVVTTYQSVS 160 (335)
Q Consensus 81 ~~~~~~~g~~VIDlS~~~R~~~d~p~~lPein~~~i~~~~~~~~VanPgC~at~~~l~L~PL~~~~~i~~v~v~s~~g~S 160 (335)
++++.++|++|||+|+|||+++||||++||+|++.++..+..++|||||||+|+++++|+||+++++|++|+|+||||+|
T Consensus 81 ~~~~~~~g~~VIDlSs~fR~~~~vplvvPEiN~~~i~~~~~~~iIAnPgC~~t~~~laL~PL~k~~~I~~i~vstyqavS 160 (348)
T PRK06598 81 APKLRAAGGVVIDNASALRMDPDVPLVVPEVNPDAIKDALKKGIIANPNCTTSLMLMALGPLHDAALIERVVVSTYQAVS 160 (348)
T ss_pred HHHHHHCCCEEEECCHHHCCCCCCEEECCCCCHHHHHHCCCCCCEECCCCHHHHHHHHHHHHHHHCCCEEEEEEEEECCC
T ss_conf 89997589899988643103688437646207899973413682238881999999999989985595132587885200
Q ss_pred CCCCCCCCCHHHHHHHHCCC-------------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHEEEEEEEEEC-CC
Q ss_conf 12321100000000000012-------------45544445510137404225532347200001101121000102-34
Q gi|254780307|r 161 GAGKKGIDELLAQTKAFLAK-------------KTIENRVFTKNIAFNVIPHIDVFMDGGSTKEEWKVLVETQKILD-PN 226 (335)
Q Consensus 161 GaG~~~~~eL~~q~~~~~~~-------------~~~~~~~~~~~la~n~iP~i~~~~~~g~~~ee~k~~~E~~kil~-~~ 226 (335)
||||++|+||+.|+..+++. ...+.+.|+++++||++||||.+.++|+++||+|+..|++|||+ ++
T Consensus 161 GAG~~~v~eL~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~iafN~iP~i~~~~~~g~t~EE~K~~~Et~kIL~~~~ 240 (348)
T PRK06598 161 GAGAAGMRELLTQMGALLAHVADELADPASAISDELPPDKFGVPIAFNLIPWIDKFLDNGQTKEEWKMVAETNKILGDPD 240 (348)
T ss_pred CCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHEECCCC
T ss_conf 15686899999999987504431124530110256674436775031015656864558868899988887641216899
Q ss_pred CCCCCCCEEEEEEECCEEEEEEEECCCCCHHHHHHHHHHCCCCEEECCCCCCCCCCHHHHCCCCCEEEEEEEECCCCCCE
Q ss_conf 32211200112110215798767246587899987310069838810268899976154348973267527763668886
Q gi|254780307|r 227 IKVSCTAARVPVFIGHAESVNIEFEKDISIKDAVAAINKSKGCIVVDKPDKNEYITPVESIRRDLVFVSRIRKDPTLKSG 306 (335)
Q Consensus 227 ~~v~~t~~~vPv~rG~~~ti~i~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~Vgrvr~~~~~~~~ 306 (335)
++|++||+||||||||++++|++|+++++.++++++|++++++.+.+.+....+|+|+++.|+|.|+|||+|.|...+++
T Consensus 241 l~Vs~T~vRVPv~~Gh~~ti~v~~~~~i~~~~i~~~l~~~~~v~~~~~~~~~~~p~p~~v~g~~~v~VGRiR~d~~~~~~ 320 (348)
T PRK06598 241 IPVDGTCVRVPVFRGHSEAVTIELKKDVSVEEAEEILNEAPGVVPNDKEATMRYLTPAAVTGTLAVPVGRIRKDNMGPNG 320 (348)
T ss_pred CCEEEEEEECCEECCEEEEEEEEEECCCCHHHHHHHHHCCCCCEEECCCCCCCCCCHHHHCCCCCEEEEEEEECCCCCCE
T ss_conf 83567999833122178899999812688899999997089958922764468997077479876799977874889998
Q ss_pred EEEEEEECCHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999970130223679999999998853
Q gi|254780307|r 307 LNLWIVANNLRKGAALNAVQIAELVAQE 334 (335)
Q Consensus 307 ~~~~~~~DNL~kGAAg~AVq~anlm~~~ 334 (335)
+++|+++|||+||||||||||||+|++|
T Consensus 321 l~l~~v~DNL~KGAA~~AVQ~~eil~~~ 348 (348)
T PRK06598 321 LSLFTVGDQLLKGAAENLVQIAEILLER 348 (348)
T ss_pred EEEEEEEHHHHHHHHHHHHHHHHHHHCC
T ss_conf 9999982344785899999999998649
No 2
>TIGR01296 asd_B aspartate-semialdehyde dehydrogenase; InterPro: IPR005986 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see . Aspartate-semialdehyde dehydrogenase, the second enzyme in the aspartate pathway, converts aspartyl phosphate to aspartate-semialdehyde, the branch point intermediate between the lysine and threonine/methionine pathways. Based on sequence alignments, the aspartate-semialdehyde dehydrogenase family appears to have two distinct subgroups, one found in most bacteria (Gram-positve and Gram-negative), while the other is found primarily in organisms lacking peptidoglycan (archaea,fungi and some bacteria). Most studies have been performed on enzymes isolated from Gram-negative bacteria , , , . The N-terminal domain forms the active site and NADP-binding pocket, while C-terminal domain is primarily involved in hydrophobic intersubunit contacts. The catalytic mechanism involves the formation of a covalent thioester acyl-enzyme intermediate mediated through nucleophilic attack by an active site cysteine residue on the substrate aspartyl phosphate. Release of inorganic phosphate is followed by hydride transfer from NADPH to yield the product. The recently described archaeal structure suggests that the two subgroups of aspartate semi-aldehyde dehydrogenase share similar structures and have an identical catalytic mechanism, despite their relatively low sequence identity . Unlike the bacterial enzymes, the archaeal enzyme utilised both NAD and NADP as cofactor. This entry represents the subgroup of aspartate-semialdehyde dehydrogenase most commonly found in bacteria. Note that some bacteria, such as Chlamydia, contain the enzyme from the other subgroup (IPR005676 from INTERPRO) instead.; GO: 0004073 aspartate-semialdehyde dehydrogenase activity, 0009086 methionine biosynthetic process, 0009088 threonine biosynthetic process.
Probab=100.00 E-value=0 Score=705.30 Aligned_cols=331 Identities=59% Similarity=0.891 Sum_probs=324.0
Q ss_pred EEEEECCCCHHHHHHHHHHHHCCCCEEEEEEEECCCCCCEEEECCCCEEEEEECCHH-HHCC--CCEEEECCCHHHHHHH
Q ss_conf 799981667789999999974499807899997476587560027815899877943-6318--8478606875899999
Q gi|254780307|r 4 KVAVVGATGNVGREMLNIICERGFPISEVVALASERSAGTKVPFGKETIDVQDVKSY-DFSD--TDICLMSAGHAVSSQM 80 (335)
Q Consensus 4 kvaIiGatG~vG~el~~lL~~~~~p~~~l~~~~s~~~~G~~i~~~~~~~~~~~~~~~-~~~~--~Divf~a~p~~~s~~~ 80 (335)
+||||||||-|||+++.+|++|+||.-++++++|.||.|+.+.|.++++.+++++.+ +|.+ +||+|||+|+.+|+++
T Consensus 1 ~vAiVGATG~VGq~~lk~LeeR~FP~~~~~~~AS~RS~G~~~~F~gke~~v~~~~~~n~F~gekidIAlFSAGgsvSke~ 80 (350)
T TIGR01296 1 NVAIVGATGAVGQEMLKILEERNFPIDKLVLLASERSAGRKVTFKGKELEVEEAKKENSFEGEKIDIALFSAGGSVSKEF 80 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCEEEECCCEEEEECCCCCCCCCCCEEEEEEECCCHHHHHHH
T ss_conf 94789626747999987641367877556441056788857851275366010100148887703345651531334888
Q ss_pred HHHHCCCCEEEEECCCCHHCCCCCCCCCCCHHHHHHCCCCCCCEECCCCCCCCCCCCCCCHHHHCCCCCCEEEEECCCCC
Q ss_conf 97504565179961451001121112364101111103334312126764322211122001101787411465215221
Q gi|254780307|r 81 SPKIAANGCIVIDNSSAWRYDSDVPLIVPEVNPQTISLASRKNIIANPNCSTIQLVVALKPLHDLAMIKRVVVTTYQSVS 160 (335)
Q Consensus 81 ~~~~~~~g~~VIDlS~~~R~~~d~p~~lPein~~~i~~~~~~~~VanPgC~at~~~l~L~PL~~~~~i~~v~v~s~~g~S 160 (335)
+|++.+.|+.|||+||+||+|+||||++||||.+.++..++.+|||||||++.+|..+|+||++.++|.+|+|+|||++|
T Consensus 81 aP~a~k~g~~VIDntS~fR~D~dVPLVVPEVN~~~~~~~~~kgIIANPNCstIqmv~~LkPl~~~~~ikrVvVSTYQAVS 160 (350)
T TIGR01296 81 APKAAKAGVIVIDNTSAFRMDPDVPLVVPEVNLEDLKEFNKKGIIANPNCSTIQMVVVLKPLHDEAKIKRVVVSTYQAVS 160 (350)
T ss_pred HHHHHCCCCEEEECCCCCCCCCCCCEEECCCCHHHHHCCCCCCCEECCCCCHHHHHHHHHHHHHHCCEEEEEEEECCCHH
T ss_conf 78886087579817620005789863443778477634788881458860077798840465630674589997220035
Q ss_pred CCCCCCCCCHHHHHHHHCCCCCCC----------CCCCCCCCCCCCCCCCCCCCCCC--CCCHHHHEEEEEEEEEC-CCC
Q ss_conf 123211000000000000124554----------44455101374042255323472--00001101121000102-343
Q gi|254780307|r 161 GAGKKGIDELLAQTKAFLAKKTIE----------NRVFTKNIAFNVIPHIDVFMDGG--STKEEWKVLVETQKILD-PNI 227 (335)
Q Consensus 161 GaG~~~~~eL~~q~~~~~~~~~~~----------~~~~~~~la~n~iP~i~~~~~~g--~~~ee~k~~~E~~kil~-~~~ 227 (335)
|||.+||+||+.||...+.++..+ ...|++|||||++||||.+.++| +|.||+|+.+|++||++ +++
T Consensus 161 GAG~~g~~eL~nQtka~~~~~E~~p~i~~~~~~~a~kf~~qIAFN~~P~Id~f~~dGsGYT~EE~Km~~Et~KImg~~d~ 240 (350)
T TIGR01296 161 GAGNKGVEELKNQTKAVLEGKEKEPEIDALEVLKAKKFPYQIAFNAIPHIDKFKDDGSGYTKEETKMLFETRKIMGIPDL 240 (350)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCC
T ss_conf 42799999989999998524588855554306888882675030000104741228786680667889863432388774
Q ss_pred CCCCCCEEEEEEECCEEEEEEEECC-CCCHHHHHHHHHHCCCCEEECCCCCCCCCCHHHHCCCCCEEEEEEEEC--CCCC
Q ss_conf 2211200112110215798767246-587899987310069838810268899976154348973267527763--6688
Q gi|254780307|r 228 KVSCTAARVPVFIGHAESVNIEFEK-DISIKDAVAAINKSKGCIVVDKPDKNEYITPVESIRRDLVFVSRIRKD--PTLK 304 (335)
Q Consensus 228 ~v~~t~~~vPv~rG~~~ti~i~l~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~Vgrvr~~--~~~~ 304 (335)
+||+||||||||+||+.++++++++ +++.++++++|++++++.+.|.|....||||..+.|.|.++|||||+| ....
T Consensus 241 ~vSaTCVRvPVf~GHS~S~~iEf~~d~~~~e~~~E~Lk~ApGV~~~D~P~~~~Yp~P~~A~G~D~VfVGRIRkDPGl~~~ 320 (350)
T TIGR01296 241 KVSATCVRVPVFTGHSESVNIEFEKDEISPEDVREVLKNAPGVVVIDDPSQNLYPTPLEAVGEDEVFVGRIRKDPGLSDE 320 (350)
T ss_pred CEEEEEEECCCHHCCHHHHHHHHCCCCCCHHHHHHHHCCCCEEEEEECCCCCCCCCCHHEECCCCEEEEEEECCCCCCCC
T ss_conf 45157887411111123210011168878889999734798679987688877888310102571567544447888667
Q ss_pred CEEEEEEEECCHHHHHHHHHHHHHHHHHHH
Q ss_conf 869999970130223679999999998853
Q gi|254780307|r 305 SGLNLWIVANNLRKGAALNAVQIAELVAQE 334 (335)
Q Consensus 305 ~~~~~~~~~DNL~kGAAg~AVq~anlm~~~ 334 (335)
+++.+|+++||||||||.||||.||++.++
T Consensus 321 ~gl~lwvv~DNLRKGAA~N~vqIAE~L~k~ 350 (350)
T TIGR01296 321 NGLHLWVVADNLRKGAALNSVQIAELLIKN 350 (350)
T ss_pred CCEEEEEEECHHHHHHHHHHHHHHHHHHCC
T ss_conf 832589962212467888899999986329
No 3
>PRK06728 aspartate-semialdehyde dehydrogenase; Provisional
Probab=100.00 E-value=0 Score=654.22 Aligned_cols=330 Identities=45% Similarity=0.728 Sum_probs=316.2
Q ss_pred EEEEEECCCCHHHHHHHHHHHH-CCCCEEEEEEEECCCCCCEEEECCCCEEEEEECCHHHHCCCCEEEECCCHHHHHHHH
Q ss_conf 1799981667789999999974-499807899997476587560027815899877943631884786068758999999
Q gi|254780307|r 3 FKVAVVGATGNVGREMLNIICE-RGFPISEVVALASERSAGTKVPFGKETIDVQDVKSYDFSDTDICLMSAGHAVSSQMS 81 (335)
Q Consensus 3 ~kvaIiGatG~vG~el~~lL~~-~~~p~~~l~~~~s~~~~G~~i~~~~~~~~~~~~~~~~~~~~Divf~a~p~~~s~~~~ 81 (335)
|||||+|||||||++|+++|+. .+||..++.+++|++++|+.+.+.++++.+++++.++|.++|++|||+|+++|++++
T Consensus 6 ~nVaIvGATG~VG~~li~lL~~h~~f~v~~v~~~aS~~saGk~v~~~~~~~~v~~~~~~~~~~~Divf~a~~~~~s~~~~ 85 (347)
T PRK06728 6 YHVAVVGATGAVGQKIIELLEKETKFNIAEVTLLSSKRSAGKTVQFKGREIIIQEAKINSFEGVDIAFFSAGGEVSRQFV 85 (347)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCEEECCCEEEEEECCHHHHHCCCEEEECCCHHHHHHHH
T ss_conf 77999988039999999999727898751079986587799762689927899857844651697899768578899999
Q ss_pred HHHCCCCEEEEECCCCHHCCCCCCCCCCCHHHHHHCCCCCCCEECCCCCCCCCCCCCCCHHHHCCCCCCEEEEECCCCCC
Q ss_conf 75045651799614510011211123641011111033343121267643222111220011017874114652152211
Q gi|254780307|r 82 PKIAANGCIVIDNSSAWRYDSDVPLIVPEVNPQTISLASRKNIIANPNCSTIQLVVALKPLHDLAMIKRVVVTTYQSVSG 161 (335)
Q Consensus 82 ~~~~~~g~~VIDlS~~~R~~~d~p~~lPein~~~i~~~~~~~~VanPgC~at~~~l~L~PL~~~~~i~~v~v~s~~g~SG 161 (335)
+++.++|++|||+|++|||++|+|+++||||++.++. .+++|||||||+|+++++|+||++.++|++++++||||+||
T Consensus 86 ~~~~~~G~~VID~Ssa~R~~~~vPlvvPEvN~~~l~~--~~~iIanPnC~tt~l~laL~PL~~~~~i~~v~vst~QavSG 163 (347)
T PRK06728 86 NQAVSSGAIVIDNTSEYRMAHDVPLVVPEVNAHTLKE--HKGIIAVPNCSALQMVTALQPIRKVFGLERIIVSTYQAVSG 163 (347)
T ss_pred HHHHHCCCEEEECCHHHCCCCCCCEECCCCCHHHHHC--CCCEEECCCHHHHHHHHHHHHHHHHHCCCEEEEEEEEECCC
T ss_conf 9998589699989756568999745887529667623--27837789808889999999999853766123566530022
Q ss_pred CCCCCCCCHHHHHHHHCCCCCCCCCCCCC-------CCCCCCCCCCCCCCCCCCCCHHHHEEEEEEEEEC-CCCCCCCCC
Q ss_conf 23211000000000000124554444551-------0137404225532347200001101121000102-343221120
Q gi|254780307|r 162 AGKKGIDELLAQTKAFLAKKTIENRVFTK-------NIAFNVIPHIDVFMDGGSTKEEWKVLVETQKILD-PNIKVSCTA 233 (335)
Q Consensus 162 aG~~~~~eL~~q~~~~~~~~~~~~~~~~~-------~la~n~iP~i~~~~~~g~~~ee~k~~~E~~kil~-~~~~v~~t~ 233 (335)
||++||+||..|+..++++...+...|+. +++||++||||.+.++|++.||+|+..|++|||+ +++++++||
T Consensus 164 aG~~gv~eL~~q~~~~l~g~~~~~~~~p~~~~~~~~piafNviP~i~~~~~~g~t~EE~k~~~E~~kIL~~~~l~is~tc 243 (347)
T PRK06728 164 SGIHAIQELKEQAKSILAGEEVESTILPAKKDKKHYPIAFNVLPQVDIFTDNDFTFEEVKMIQETKKILEDPNLKMAATC 243 (347)
T ss_pred CCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEE
T ss_conf 56778999999999874688665444565555446730332056557556689589998887777751678877505699
Q ss_pred EEEEEEECCEEEEEEEECCCCCHHHHHHHHHHCCCCEEECCCCCCCCCCHHHHCCCCCEEEEEEEECCCCCCEEEEEEEE
Q ss_conf 01121102157987672465878999873100698388102688999761543489732675277636688869999970
Q gi|254780307|r 234 ARVPVFIGHAESVNIEFEKDISIKDAVAAINKSKGCIVVDKPDKNEYITPVESIRRDLVFVSRIRKDPTLKSGLNLWIVA 313 (335)
Q Consensus 234 ~~vPv~rG~~~ti~i~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~Vgrvr~~~~~~~~~~~~~~~ 313 (335)
+||||+|||+.++|++|+++++.++++++|++++++.+.|.|....||+|..+.|++.++|||+|.+...++++++|+++
T Consensus 244 vRVPv~~GH~~sv~v~~~~~~~~eei~~~l~~~~~v~~~d~p~~~~~p~p~~~~g~~~v~VGRiR~d~~~~~~l~~~~v~ 323 (347)
T PRK06728 244 VRVPVISGHSESVYIELEKEATVAEIKEVLFDAPGVILQDNPSEQLYPMPLYAEGKIDTFVGRIRKDPDTPNGFHLWIVS 323 (347)
T ss_pred EEECCCCCEEEEEEEEECCCCCHHHHHHHHHHCCCCEECCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCEEEEEEEE
T ss_conf 99575052823689998577999999999974899885148654689887211699864776416558999969999997
Q ss_pred CCHHHHHHHHHHHHHHHHHHH
Q ss_conf 130223679999999998853
Q gi|254780307|r 314 NNLRKGAALNAVQIAELVAQE 334 (335)
Q Consensus 314 DNL~kGAAg~AVq~anlm~~~ 334 (335)
|||+||||||||||||+|+++
T Consensus 324 DNl~kGAA~~AVq~aE~l~~~ 344 (347)
T PRK06728 324 DNLLKGAAWNSVQIAETMVEE 344 (347)
T ss_pred HHHHHHHHHHHHHHHHHHHHC
T ss_conf 356898999999999999975
No 4
>PRK08040 putative semialdehyde dehydrogenase; Provisional
Probab=100.00 E-value=0 Score=653.35 Aligned_cols=329 Identities=36% Similarity=0.615 Sum_probs=316.9
Q ss_pred CC--EEEEEECCCCHHHHHHHHHHHHCCCCEEEEEEEECCCCCCEEEECCCCEEEEEECCHHHHCCCCEEEECCCHHHHH
Q ss_conf 96--1799981667789999999974499807899997476587560027815899877943631884786068758999
Q gi|254780307|r 1 MT--FKVAVVGATGNVGREMLNIICERGFPISEVVALASERSAGTKVPFGKETIDVQDVKSYDFSDTDICLMSAGHAVSS 78 (335)
Q Consensus 1 M~--~kvaIiGatG~vG~el~~lL~~~~~p~~~l~~~~s~~~~G~~i~~~~~~~~~~~~~~~~~~~~Divf~a~p~~~s~ 78 (335)
|+ +||||+||||+||++++++|++|+||+.++.+++|++|+|+.++|+++++.++++++++|+++|++|||+|.++|+
T Consensus 1 M~~~~~VaivGATG~VGq~~l~lL~e~~fp~~~l~~laS~~SaGk~i~~~~~~~~v~~~~~~~~~~~di~ff~a~~~~s~ 80 (337)
T PRK08040 1 MSEGWNIALLGATGAVGEALLETLAERQFPVGEIYALAREESAGETLRFGGKSITVQDAAEFDWTQAQLAFFVAGKEASA 80 (337)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCEEEECCCEEEEEECCCCCCCCCCEEEECCCCHHHH
T ss_conf 99998799988850889999999971799813599998888899777789918899977703324698899917717888
Q ss_pred HHHHHHCCCCEEEEECCCCHHCCCCCCCCCCCHHHHHHCCCCCCCEECCCCCCCCCCCCCCCHHHHCCCCCCEEEEECCC
Q ss_conf 99975045651799614510011211123641011111033343121267643222111220011017874114652152
Q gi|254780307|r 79 QMSPKIAANGCIVIDNSSAWRYDSDVPLIVPEVNPQTISLASRKNIIANPNCSTIQLVVALKPLHDLAMIKRVVVTTYQS 158 (335)
Q Consensus 79 ~~~~~~~~~g~~VIDlS~~~R~~~d~p~~lPein~~~i~~~~~~~~VanPgC~at~~~l~L~PL~~~~~i~~v~v~s~~g 158 (335)
++++++.++||.|||+||+|||++|+|+++||||++.++..+++++|+||||++++++++|+||++.++|++++++|||+
T Consensus 81 ~~~~~a~~aG~~VIDnss~~Rm~~dVPLvvPeVN~~~l~~~~~~~IianPNCsT~~l~~aL~pL~~~~gi~rv~vsTyQA 160 (337)
T PRK08040 81 AYAEEATNAGCLVIDSSGLFALEPDVPLVVPEVNPFVLADYRNRNVIAVADSLTSQLLAALKPLIDQGGLSRISVTNLIS 160 (337)
T ss_pred HHHHHHHHCCCEEEECCHHHCCCCCCCCCCCCCCHHHHHHHCCCCEEECCCHHHHHHHHHHHHHHHHCCEEEEEEEEEEE
T ss_conf 88999984895999796131058887421674087888743249825457708888898778888630645899998640
Q ss_pred CCCCCCCCCCCHHHHHHHHCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHEEEEEEEEEC-CCCCCCCCCEEE
Q ss_conf 2112321100000000000012455-44445510137404225532347200001101121000102-343221120011
Q gi|254780307|r 159 VSGAGKKGIDELLAQTKAFLAKKTI-ENRVFTKNIAFNVIPHIDVFMDGGSTKEEWKVLVETQKILD-PNIKVSCTAARV 236 (335)
Q Consensus 159 ~SGaG~~~~~eL~~q~~~~~~~~~~-~~~~~~~~la~n~iP~i~~~~~~g~~~ee~k~~~E~~kil~-~~~~v~~t~~~v 236 (335)
+||||++||+||+.|+..++++.+. +...|+++|+||+||||+. ++|+++||+|+..|++|||+ +++++++||+||
T Consensus 161 vSGaG~~gv~eL~~qt~~ll~g~~~~~~~~f~~qiafNviP~I~~--e~g~t~EE~K~~~EtrKIL~~~~i~VsaTcvRV 238 (337)
T PRK08040 161 ASAQGKKAVDALAGQSAKLLNGIPIDEEDFFGRQLAFNMLPLLPD--SEGSVREERRIVDEVRKILQDEGLMISASVVQS 238 (337)
T ss_pred CCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC--CCCCCHHHHHHHHHHHCCCCCCCCCCCEEEEEC
T ss_conf 410358899999999999854998876545775332565674478--787429899998875064678887641079974
Q ss_pred EEEECCEEEEEEEECCCCCHHHHHHHHHHCCCCEEECCCCCCCCCCHH-HHCCCCCEEEEEEEECCCCCCEEEEEEEECC
Q ss_conf 211021579876724658789998731006983881026889997615-4348973267527763668886999997013
Q gi|254780307|r 237 PVFIGHAESVNIEFEKDISIKDAVAAINKSKGCIVVDKPDKNEYITPV-ESIRRDLVFVSRIRKDPTLKSGLNLWIVANN 315 (335)
Q Consensus 237 Pv~rG~~~ti~i~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~v~Vgrvr~~~~~~~~~~~~~~~DN 315 (335)
|||+||+.+++++++++++.++++++|++++++.+.++ ++||+|. ++.|++.++|||+|.|...+++++||+++||
T Consensus 239 PV~~GHs~sV~ve~~~~~~~e~~~~~l~~~~~v~~~de---~~~P~p~~da~g~~~v~VGRiR~d~~~~~~l~~w~v~DN 315 (337)
T PRK08040 239 PVFYGHAQMVHFEALRPLAAEEARDAFAQGEDIVLSEE---NDYPTQVGDASGNPHLSIGCVRNDYGMPEQLQFWSVADN 315 (337)
T ss_pred CEECCEEEEEEEEECCCCCHHHHHHHHHCCCCCEEECC---CCCCCCCHHCCCCCCEEEEEEECCCCCCCCEEEEEEECH
T ss_conf 40311788999998787999999999860899798279---999874000379987698824766888892899999726
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q ss_conf 0223679999999998853
Q gi|254780307|r 316 LRKGAALNAVQIAELVAQE 334 (335)
Q Consensus 316 L~kGAAg~AVq~anlm~~~ 334 (335)
|+||||+||||+||+|.+|
T Consensus 316 lrkGAA~naVqiaE~Lv~~ 334 (337)
T PRK08040 316 VRFGGALMAVKIAEKLVQE 334 (337)
T ss_pred HHHHHHHHHHHHHHHHHHH
T ss_conf 8886999999999999984
No 5
>PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=100.00 E-value=0 Score=651.28 Aligned_cols=330 Identities=38% Similarity=0.646 Sum_probs=319.9
Q ss_pred CC--EEEEEECCCCHHHHHHHHHHHHCCCCEEEEEEEECCCCCCEEEECCCCEEEEEECCHHHHCCCCEEEECCCHHHHH
Q ss_conf 96--1799981667789999999974499807899997476587560027815899877943631884786068758999
Q gi|254780307|r 1 MT--FKVAVVGATGNVGREMLNIICERGFPISEVVALASERSAGTKVPFGKETIDVQDVKSYDFSDTDICLMSAGHAVSS 78 (335)
Q Consensus 1 M~--~kvaIiGatG~vG~el~~lL~~~~~p~~~l~~~~s~~~~G~~i~~~~~~~~~~~~~~~~~~~~Divf~a~p~~~s~ 78 (335)
|+ |||||+|||||||++|+|+|++|+||+.++..++|++|+|+.+++.++++.++++++++|+++|++|||+|+++|+
T Consensus 1 M~~~~~VaIvGATG~VG~~li~lL~~~~~p~~~l~~laS~~saGk~i~~~~~~l~v~~~~~~~~~~vDlvffa~~~~vs~ 80 (336)
T PRK05671 1 MSQPLDIAVVGATGSVGEALVQVLEERDFPVGTLHLLASMESAGHSVPFAGKNLRVREVDSFDFSQVKLAFFAAGAAVSR 80 (336)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCEEEECCCEEEEEECCCCCCCCCCEEEECCCHHHHH
T ss_conf 99888799999864999999999863699802699998765689875468967899978824424598899868816679
Q ss_pred HHHHHHCCCCEEEEECCCCHHCCCCCCCCCCCHHHHHHCCCCCCCEECCCCCCCCCCCCCCCHHHHCCCCCCEEEEECCC
Q ss_conf 99975045651799614510011211123641011111033343121267643222111220011017874114652152
Q gi|254780307|r 79 QMSPKIAANGCIVIDNSSAWRYDSDVPLIVPEVNPQTISLASRKNIIANPNCSTIQLVVALKPLHDLAMIKRVVVTTYQS 158 (335)
Q Consensus 79 ~~~~~~~~~g~~VIDlS~~~R~~~d~p~~lPein~~~i~~~~~~~~VanPgC~at~~~l~L~PL~~~~~i~~v~v~s~~g 158 (335)
++++++.++||+|||+|++||++ ++|+++||+|+++++..+++++|+||||++++++++|+||++.+++++++++|||+
T Consensus 81 ~~a~~~~~aG~~VID~Ss~fr~~-~vPlvvPEvN~~~l~~~~~~~iVanPnC~t~~l~laL~Pl~~~~~l~~i~v~t~qa 159 (336)
T PRK05671 81 SFAEKALAAGCSVIDLSGALPSA-QAPNVVPEANAERLASLAAPFLVSSPSASAVALAVALAPLKGLLDIQRVQVTACLA 159 (336)
T ss_pred HHHHHHHHCCCEEEECCCCCCCC-CCCEEECCCCHHHHHHCCCCCEEECCCCHHHHHHHCCHHHHHHHCCEEEEEEEEEC
T ss_conf 98999997699799562013303-79777404299999607568778678606666663016689870943899986405
Q ss_pred CCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHEEEEEEEEEC-CCCCCCCCCEEEE
Q ss_conf 211232110000000000001245544445510137404225532347200001101121000102-3432211200112
Q gi|254780307|r 159 VSGAGKKGIDELLAQTKAFLAKKTIENRVFTKNIAFNVIPHIDVFMDGGSTKEEWKVLVETQKILD-PNIKVSCTAARVP 237 (335)
Q Consensus 159 ~SGaG~~~~~eL~~q~~~~~~~~~~~~~~~~~~la~n~iP~i~~~~~~g~~~ee~k~~~E~~kil~-~~~~v~~t~~~vP 237 (335)
+|||||+|+++|..|+..+++.++.++..|+++++||++||||.+.++|++.||+|+..|++|+|+ ++++|++||+|||
T Consensus 160 vSGaG~~gv~~L~~qt~~lln~~~~~~~~~~~~iafNviP~ig~~~~~g~~~eE~k~~~e~~kil~~~~~~vs~t~vrVP 239 (336)
T PRK05671 160 VSALGREGVSELARQTAELLNARPLEPRFFDRQVAFNLLAQVGAPDEQGHTALERRLVAELRQLLGLPELKVSVTCIQVP 239 (336)
T ss_pred CCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEECC
T ss_conf 01077656899999999872688777655540100433434575566787699987778887763488877346889723
Q ss_pred EEECCEEEEEEEECCCCCHHHHHHHHHHCCCCEEECCCCCCCCCCHH-HHCCCCCEEEEEEEECCCCCCEEEEEEEECCH
Q ss_conf 11021579876724658789998731006983881026889997615-43489732675277636688869999970130
Q gi|254780307|r 238 VFIGHAESVNIEFEKDISIKDAVAAINKSKGCIVVDKPDKNEYITPV-ESIRRDLVFVSRIRKDPTLKSGLNLWIVANNL 316 (335)
Q Consensus 238 v~rG~~~ti~i~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~v~Vgrvr~~~~~~~~~~~~~~~DNL 316 (335)
|||||+.+++++++++++.++++++|++++++.+.++ +++|+|. ++.|++.|+|||+|.+...++++++|+++|||
T Consensus 240 V~~Ghs~sv~v~~~~~~~~~~i~~~l~~~~~v~~~~~---~~~P~p~~d~~g~~~v~VGRiR~~~~~~~~l~~~~v~DNl 316 (336)
T PRK05671 240 VFFGDSFSVTLQSAEPVDLAAVNAALEAADGIELVEA---GDYPTPVGDAVGQDVVYVGRVRAGVDDPRQLNLWLTSDNV 316 (336)
T ss_pred EECCEEEEEEEEECCCCCHHHHHHHHHCCCCCEEECC---CCCCCCCCCCCCCCCEEEEEEECCCCCCCEEEEEEEEHHH
T ss_conf 0311899999995798869999999855999799488---9998852102799876898615258989979999998217
Q ss_pred HHHHHHHHHHHHHHHHHH
Q ss_conf 223679999999998853
Q gi|254780307|r 317 RKGAALNAVQIAELVAQE 334 (335)
Q Consensus 317 ~kGAAg~AVq~anlm~~~ 334 (335)
+||||||||||||+|+|+
T Consensus 317 ~kGAA~~AVq~AE~l~k~ 334 (336)
T PRK05671 317 RKGAALNAVQVGELLIKH 334 (336)
T ss_pred HHHHHHHHHHHHHHHHHH
T ss_conf 886999999999999985
No 6
>COG0136 Asd Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=100.00 E-value=0 Score=606.40 Aligned_cols=327 Identities=55% Similarity=0.848 Sum_probs=309.2
Q ss_pred CEEEEEECCCCHHHHHHHHHHHHCCCCEEEEEEEECCCCCCEE-EECCCCEEEEEE--CCHHHHCCCCEEEECCCHHHHH
Q ss_conf 6179998166778999999997449980789999747658756-002781589987--7943631884786068758999
Q gi|254780307|r 2 TFKVAVVGATGNVGREMLNIICERGFPISEVVALASERSAGTK-VPFGKETIDVQD--VKSYDFSDTDICLMSAGHAVSS 78 (335)
Q Consensus 2 ~~kvaIiGatG~vG~el~~lL~~~~~p~~~l~~~~s~~~~G~~-i~~~~~~~~~~~--~~~~~~~~~Divf~a~p~~~s~ 78 (335)
+|||||+||||+||++|+++|++++||..++.+++|.+|+|++ +.|+++.+.+.+ .+.++|+++|++|+|+|.++|+
T Consensus 1 ~~~VavvGATG~VG~~~~~~L~e~~f~~~~~~~~AS~rSaG~~~~~f~~~~~~v~~~~~~~~~~~~~Divf~~ag~~~s~ 80 (334)
T COG0136 1 KLNVAVLGATGAVGQVLLELLEERHFPFEELVLLASARSAGKKYIEFGGKSIGVPEDAADEFVFSDVDIVFFAAGGSVSK 80 (334)
T ss_pred CCEEEEEECCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHH
T ss_conf 91899994235589999999875399840578885231157716010675035762113410012499999917668789
Q ss_pred HHHHHHCCCCEEEEECCCCHHCCCCCCCCCCCHHHHHHCCCCCCC-EECCCCCCCCCCCCCCCHHHHCCCCCCEEEEECC
Q ss_conf 999750456517996145100112111236410111110333431-2126764322211122001101787411465215
Q gi|254780307|r 79 QMSPKIAANGCIVIDNSSAWRYDSDVPLIVPEVNPQTISLASRKN-IIANPNCSTIQLVVALKPLHDLAMIKRVVVTTYQ 157 (335)
Q Consensus 79 ~~~~~~~~~g~~VIDlS~~~R~~~d~p~~lPein~~~i~~~~~~~-~VanPgC~at~~~l~L~PL~~~~~i~~v~v~s~~ 157 (335)
+++++++++||.|||+||+|||++|+|+++||||++++...++++ +|+||||++++|+++|+||+++++|++++|+|||
T Consensus 81 ~~~p~~~~~G~~VIdnsSa~Rm~~DVPLVVPeVN~~~l~~~~~rg~IianpNCst~~l~~aL~PL~~~~~i~~v~VsTyQ 160 (334)
T COG0136 81 EVEPKAAEAGCVVIDNSSAFRMDPDVPLVVPEVNPEHLIDYQKRGFIIANPNCSTIQLVLALKPLHDAFGIKRVVVSTYQ 160 (334)
T ss_pred HHHHHHHHCCCEEEECCCCCCCCCCCCEECCCCCHHHHHHHHHCCCEEECCCHHHHHHHHHHHHHHHHCCCEEEEEEEEE
T ss_conf 99999997698899687311158998776588698999745417978988971899999988988751381089999750
Q ss_pred CCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHEEEEEEEEEC-CCCCCCCCCEEE
Q ss_conf 2211232110000000000001245544445510137404225532347200001101121000102-343221120011
Q gi|254780307|r 158 SVSGAGKKGIDELLAQTKAFLAKKTIENRVFTKNIAFNVIPHIDVFMDGGSTKEEWKVLVETQKILD-PNIKVSCTAARV 236 (335)
Q Consensus 158 g~SGaG~~~~~eL~~q~~~~~~~~~~~~~~~~~~la~n~iP~i~~~~~~g~~~ee~k~~~E~~kil~-~~~~v~~t~~~v 236 (335)
++||||+++|+||..|+...+++.+..+. +++||||++|||+.+.++|+++||+|+..|++|||+ +.++|++||+||
T Consensus 161 AvSGAG~~~~~el~~q~~~~~~~~~i~~~--~~~iAfNviP~I~~~~~ng~t~EE~K~~~Et~KIlg~~~~~VsatcvRV 238 (334)
T COG0136 161 AVSGAGAEGGVELAGQTDALLNGIPILPI--GYPLAFNVIPHIDGFLDNGYTKEEWKIEAETRKILGDPDIKVSATCVRV 238 (334)
T ss_pred HHHHCCCCCHHHHHHHHHHHCCCCCCCCC--CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEEEC
T ss_conf 11226810156689887431367655665--6643331013577645577518999988999987188988257899972
Q ss_pred EEEECCEEEEEEEECCCCCHHHHH-HHHHHCCCCEEECCCCCCCCC-CHHHHCCCCCEEEEEEEECCCCCCEEEEEEEEC
Q ss_conf 211021579876724658789998-731006983881026889997-615434897326752776366888699999701
Q gi|254780307|r 237 PVFIGHAESVNIEFEKDISIKDAV-AAINKSKGCIVVDKPDKNEYI-TPVESIRRDLVFVSRIRKDPTLKSGLNLWIVAN 314 (335)
Q Consensus 237 Pv~rG~~~ti~i~l~~~~~~~~i~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~v~Vgrvr~~~~~~~~~~~~~~~D 314 (335)
||||||+++++++|+++++.+++. .++.+++++.+.+.+. .+| +|.++.|++.++|||+|+|...++++++|+++|
T Consensus 239 PV~~GHse~v~ve~~~~~~~~e~~~~~l~~ap~v~v~~~~~--~~P~~~~d~~g~~~v~VGRiR~d~~~~~~l~~~~v~d 316 (334)
T COG0136 239 PVFYGHSEAVTVEFKKDVDPEEIREELLPSAPGVVVVDNPE--DRPQTPLDATGGDEVSVGRIRKDLSGPEGLKLWVVGD 316 (334)
T ss_pred CEECCCCEEEEEEECCCCCHHHHHHHHHCCCCCCEEEECCC--CCCCCHHHHCCCCCEEEEEEEECCCCCCCEEEEEEEC
T ss_conf 41615206789985698998999999753189968986776--6865836634898557767663478887479999860
Q ss_pred CHHHHHHHHHHHHHHHHH
Q ss_conf 302236799999999988
Q gi|254780307|r 315 NLRKGAALNAVQIAELVA 332 (335)
Q Consensus 315 NL~kGAAg~AVq~anlm~ 332 (335)
||+||||+++||+||+++
T Consensus 317 Nl~~GAA~~av~iaE~L~ 334 (334)
T COG0136 317 NLRKGAALNAVLIAELLL 334 (334)
T ss_pred HHHHHHHHHHHHHHHHHC
T ss_conf 113511889999988659
No 7
>PRK06901 aspartate-semialdehyde dehydrogenase; Provisional
Probab=100.00 E-value=0 Score=577.82 Aligned_cols=315 Identities=23% Similarity=0.370 Sum_probs=291.1
Q ss_pred CC--EEEEEECCCCHHHHHHHHHHHHCCCCEEEEEEEECC-CCCCEEEECCCCEEEEEECCHHHHCCCCEEEECCCHHHH
Q ss_conf 96--179998166778999999997449980789999747-658756002781589987794363188478606875899
Q gi|254780307|r 1 MT--FKVAVVGATGNVGREMLNIICERGFPISEVVALASE-RSAGTKVPFGKETIDVQDVKSYDFSDTDICLMSAGHAVS 77 (335)
Q Consensus 1 M~--~kvaIiGatG~vG~el~~lL~~~~~p~~~l~~~~s~-~~~G~~i~~~~~~~~~~~~~~~~~~~~Divf~a~p~~~s 77 (335)
|+ ++||| ||||.||++++++|++|+||..+|.+++|+ .++|+.+.|+++++.++++++++|.++|++||| ++..+
T Consensus 1 M~~~~niAI-GATGaVG~~~l~iLeer~fPv~~L~llas~~~s~~~~i~f~g~~v~~~~~~~f~~~~vdi~ffA-g~~~s 78 (323)
T PRK06901 1 MDATLNIAI-AAEFELSEKIVEALEESDLEISSISIVEIEPFGEEQGIRFNNKAVEQIAPDEVEWADFNYVFFA-GKLEQ 78 (323)
T ss_pred CCCCCCEEE-ECCCHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCEEEECCEEEEEECHHHCCCCCCCEEEEC-CCHHH
T ss_conf 997641899-7666899999999997599946087776326678857998998999951213563248899985-82899
Q ss_pred HHHHHHHCCCCEEEEECCCCHHCCCCCCCCCCCHHHHHHCCCCCCCEECCCCCCCCCCCCCCCHHHHCCCCCCEEEEECC
Q ss_conf 99997504565179961451001121112364101111103334312126764322211122001101787411465215
Q gi|254780307|r 78 SQMSPKIAANGCIVIDNSSAWRYDSDVPLIVPEVNPQTISLASRKNIIANPNCSTIQLVVALKPLHDLAMIKRVVVTTYQ 157 (335)
Q Consensus 78 ~~~~~~~~~~g~~VIDlS~~~R~~~d~p~~lPein~~~i~~~~~~~~VanPgC~at~~~l~L~PL~~~~~i~~v~v~s~~ 157 (335)
.++++.++++||.|||+||+|||++|+|+++||||++.++..+++++||||||+|++|+++|+||++.++|++|+++|||
T Consensus 79 ~~~~p~A~~aG~vVIDnSSafRmd~dvPLVVPEVN~~~l~~~~~~~IIANPNCsTiqlvvaL~PLh~~~~ikrvvvsTYQ 158 (323)
T PRK06901 79 VEHLAQAAEAGCIVIDMLGICAALANVPVVVPSVNDEQLAELRQRNIVSLPDPQVSQLALALAPFLQEQPLNQIFVTSLL 158 (323)
T ss_pred HHHHHHHHHCCCEEEECCHHHHCCCCCCEECCCCCHHHHHCCHHCCEEECCCHHHHHHHHHHHHHHHHHCCCEEEEEEEH
T ss_conf 99999999889899989756517899864806749999851311798889982899999988999997197789998620
Q ss_pred CCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHEEEEEEEEECCCCCCCCCCEEEE
Q ss_conf 22112321100000000000012455444455101374042255323472000011011210001023432211200112
Q gi|254780307|r 158 SVSGAGKKGIDELLAQTKAFLAKKTIENRVFTKNIAFNVIPHIDVFMDGGSTKEEWKVLVETQKILDPNIKVSCTAARVP 237 (335)
Q Consensus 158 g~SGaG~~~~~eL~~q~~~~~~~~~~~~~~~~~~la~n~iP~i~~~~~~g~~~ee~k~~~E~~kil~~~~~v~~t~~~vP 237 (335)
++||+|++||+||..|+..++++++++.. ++|+|||++|+ ||+|+..|++|||+...++++||+|||
T Consensus 159 aVSGaG~~gv~EL~~Qt~~~lng~~~~~~--~~qiAFN~iP~-----------ee~k~~~Et~KIl~~~~~vsaT~VRVP 225 (323)
T PRK06901 159 PASYTDAETVKKLAGQTARLLNGIPLDEE--EQRLAFDVFPA-----------QAQNLELQLQKIFPQLENATFHSIQVP 225 (323)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCC--CCCEEECCCCC-----------CCCCCHHHHHHHCCCCCCCEEEEEEEE
T ss_conf 04554188999999999997369999878--87433556583-----------010341888872178766301018820
Q ss_pred EEECCEEEEEEEECCCCCHHHHHHHHHHCCCCEEECCCCCCCCCCHH---HHCCCCCEEEEEEEECCCCCCEEEEEEEEC
Q ss_conf 11021579876724658789998731006983881026889997615---434897326752776366888699999701
Q gi|254780307|r 238 VFIGHAESVNIEFEKDISIKDAVAAINKSKGCIVVDKPDKNEYITPV---ESIRRDLVFVSRIRKDPTLKSGLNLWIVAN 314 (335)
Q Consensus 238 v~rG~~~ti~i~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~---~~~g~~~v~Vgrvr~~~~~~~~~~~~~~~D 314 (335)
||+||+.+++++++++++.+++++++++.+++.+.++ .+++|. +..+.+....+|+|.+...++++.||+++|
T Consensus 226 V~~gHSesV~ve~~~~~~~~~~~~~l~~~~gv~~~~~----~~~~p~~~~~~~~~~~~~~~rir~d~~~~ngl~lWvvaD 301 (323)
T PRK06901 226 VFYGLAQMVTALSDYDLDIESILAEWQQNNLLRYHEE----KLITPVLNGENENGEESVKLHISQLSAVENGVQFWSVAD 301 (323)
T ss_pred EEEEEEEEEEEEECCCCCHHHHHHHHCCCCCEEECCC----CCCCCCCCCCCCCCCCEEEEECCCCCCCCCEEEEEEEEC
T ss_conf 3423889999997898999999998606998587468----888884650016885559998347899899799999770
Q ss_pred CHHHHHHHHHHHHHHHHHHH
Q ss_conf 30223679999999998853
Q gi|254780307|r 315 NLRKGAALNAVQIAELVAQE 334 (335)
Q Consensus 315 NL~kGAAg~AVq~anlm~~~ 334 (335)
||+||||.||||+||+|.++
T Consensus 302 NlRKGAAlNAVQIAE~Lik~ 321 (323)
T PRK06901 302 EQRFNLAFLAVKLLELIYQQ 321 (323)
T ss_pred CHHHHHHHHHHHHHHHHHHC
T ss_conf 17788999999999999975
No 8
>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase; InterPro: IPR000706 N -Acetylglutamate (NAG) fulfils distinct biological roles in lower and higher organisms. In prokaryotes, lower eukaryotes and plants it is the first intermediate in the biosynthesis of arginine, whereas in ureotelic (excreting nitrogen mostly in the form of urea) vertebrates, it is an essential allosteric cofactor for carbamyl phosphate synthetase I (CPSI), the first enzyme of the urea cycle. The pathway that leads from glutamate to arginine in lower organisms employs eight steps, starting with the acetylation of glutamate to form NAG. In these species, NAG can be produced by two enzymatic reactions: one catalysed by NAG synthase (NAGS) and the other by ornithine acetyltransferase (OAT). In ureotelic species, NAG is produced exclusively by NAGS. In lower organisms, NAGS is feedback-inhibited by L-arginine, whereas mammalian NAGS activity is significantly enhanced by this amino acid. The NAGS genes of bacteria, fungi and mammals are more diverse than other arginine-biosynthesis and urea-cycle genes. The evolutionary relationship between the distinctly different roles of NAG and its metabolism in lower and higher organisms remains to be determined . The pathway from glutamate to arginine is: NAGS; N-acetylglutamate synthase (2.3.1.1 from EC) (glutamate to N-acetylglutamate) NAGK; N-acetylglutamate kinase (2.7.2.8 from EC) (N-acetylglutamate to N-acetylglutamate-5P) NAGSA; N-acetyl-gamma-glutamyl-phosphate reductase (1.2.1.38 from EC) (N-acetylglutamate-5P to N-acetylglumate semialdehyde) Acetylornithine aminotransferase (2.6.1.11 from EC) (N-acetylglumate semialdehyde to N-acetylornithine) Acetylornithine deacetylase (3.5.1.16 from EC) (N-acetylornithine to ornithine) Arginase (3.5.3.1 from EC) (ornithine to arginine) N-acetyl-gamma-glutamyl-phosphate reductase (1.2.1.38 from EC) (AGPR) , is the enzyme that catalyzes the third step in the biosynthesis of arginine from glutamate, the NADP-dependent reduction of N-acetyl-5-glutamyl phosphate into N-acetylglutamate 5-semialdehyde. In bacteria it is a monofunctional protein of 35 to 38 kD (gene argC), while in fungi it is part of a bifunctional mitochondrial enzyme (gene ARG5,6, arg11 or arg-6) which contains a N-terminal acetylglutamate kinase (2.7.2.8 from EC) domain and a C-terminal AGPR domain. In the Escherichia coli enzyme, a cysteine has been shown to be implicated in the catalytic activity, and the region around this residue is well conserved.; GO: 0003942 N-acetyl-gamma-glutamyl-phosphate reductase activity, 0006526 arginine biosynthetic process.
Probab=100.00 E-value=0 Score=571.09 Aligned_cols=303 Identities=25% Similarity=0.369 Sum_probs=251.9
Q ss_pred EEEEEECCCCHHHHHHHHHHHHCCCCEEEEEEEECCCC--CCEEEECC------CCE-EEEEECCH---HHH--CCCCEE
Q ss_conf 17999816677899999999744998078999974765--87560027------815-89987794---363--188478
Q gi|254780307|r 3 FKVAVVGATGNVGREMLNIICERGFPISEVVALASERS--AGTKVPFG------KET-IDVQDVKS---YDF--SDTDIC 68 (335)
Q Consensus 3 ~kvaIiGatG~vG~el~~lL~~~~~p~~~l~~~~s~~~--~G~~i~~~------~~~-~~~~~~~~---~~~--~~~Div 68 (335)
+||+|||||||+|.||+|||. +||.+|+..+.|+++ +|+++..- .-+ +.+++.+. +.. .++|+|
T Consensus 1 ~~V~IvGAsGYtG~EL~RLL~--~HP~~e~~~~~ss~~~~aG~~~~~~~P~L~g~~~~~~~~~~~~~~~~~~~L~~~DvV 78 (361)
T TIGR01850 1 IKVGIVGASGYTGGELLRLLA--NHPEVEITYLVSSRESLAGKPLSEVHPHLRGLVDYLNLEPLDDAKLEEIELEDADVV 78 (361)
T ss_pred CEEEEEECCCHHHHHHHHHHH--CCCCEEEEEEEEEEEHHCCCCHHHHCCCHHHHHCCCCCCCCCHHHHHHHHHCCCCEE
T ss_conf 968999334446899999984--199537888887620113852577366111010023336667667888621376789
Q ss_pred EECCCHHHHHHHHHHHCCCCEEEEECCCCHHCCC------------------CCCCCCCCHH--HHHHCCCCCCCEECCC
Q ss_conf 6068758999999750456517996145100112------------------1112364101--1111033343121267
Q gi|254780307|r 69 LMSAGHAVSSQMSPKIAANGCIVIDNSSAWRYDS------------------DVPLIVPEVN--PQTISLASRKNIIANP 128 (335)
Q Consensus 69 f~a~p~~~s~~~~~~~~~~g~~VIDlS~~~R~~~------------------d~p~~lPein--~~~i~~~~~~~~VanP 128 (335)
|+||||++|+++++++.++|++|||||+|||+++ .|+|+|||+| ||.|+.++ +||||
T Consensus 79 FlAlPhgvs~~~~p~~l~~g~~ViDLSADFRl~d~~~Ye~wYG~h~~~~ll~~avYGLpEl~~~re~i~~A~---liAnP 155 (361)
T TIGR01850 79 FLALPHGVSMELAPELLEAGVKVIDLSADFRLKDPEVYEKWYGFHAAPELLQEAVYGLPELHGAREEIKGAR---LIANP 155 (361)
T ss_pred EECCCHHHHHHHHHHHHHCCCEEEECCCCCCCCCHHHHHHHCCCCCCHHHHHHCCCCCCCCCHHHHHHHCCC---EEECC
T ss_conf 986872556999999984798699888343369979999966778896666311556767010588984295---76448
Q ss_pred CCCCCCCCCCCCHHHHCCCCC---CEEEEECCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 643222111220011017874---11465215221123211000000000000124554444551013740422553234
Q gi|254780307|r 129 NCSTIQLVVALKPLHDLAMIK---RVVVTTYQSVSGAGKKGIDELLAQTKAFLAKKTIENRVFTKNIAFNVIPHIDVFMD 205 (335)
Q Consensus 129 gC~at~~~l~L~PL~~~~~i~---~v~v~s~~g~SGaG~~~~~eL~~q~~~~~~~~~~~~~~~~~~la~n~iP~i~~~~~ 205 (335)
|||||+++|+|+||.+++.|+ +++|++++|+|||||++-. ...| ..+..|+.||- ..
T Consensus 156 GCYpTA~~LaL~PL~~~~l~~~~~~~i~dakSGvSGAGr~as~----------------~~~~-~E~~en~~pY~--~~- 215 (361)
T TIGR01850 156 GCYPTATLLALAPLLKEGLIDPTSEIIVDAKSGVSGAGRKASE----------------KSHF-PEVNENLRPYK--VT- 215 (361)
T ss_pred CCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCCC----------------CCCH-HHHHCCCEECC--CC-
T ss_conf 8617899999899998315676776589887445566777763----------------3573-44327706203--79-
Q ss_pred CCCCCHHHHEEEEEEEEECC--CCCCCCCCEEEEEEECCEEEEEEEECCC-CCHHHHHHHHHHCCCCE-EECCCC--CCC
Q ss_conf 72000011011210001023--4322112001121102157987672465-87899987310069838-810268--899
Q gi|254780307|r 206 GGSTKEEWKVLVETQKILDP--NIKVSCTAARVPVFIGHAESVNIEFEKD-ISIKDAVAAINKSKGCI-VVDKPD--KNE 279 (335)
Q Consensus 206 ~g~~~ee~k~~~E~~kil~~--~~~v~~t~~~vPv~rG~~~ti~i~l~~~-~~~~~i~~~~~~~~~~~-~~~~~~--~~~ 279 (335)
|.|||+.++.+|++++-+. +++|+||||.+|++|||+.|+|++++++ ++.+|++++|+++|.-. ++.-.+ ..+
T Consensus 216 -G~HRH~PEI~q~L~~~~~~~~~~~v~FTPHL~P~~RGIl~T~~~~l~~~~~~~~~~~~~Y~~~Y~~epFVrv~~~G~~~ 294 (361)
T TIGR01850 216 -GGHRHTPEIEQELGKLAGGIDKVKVSFTPHLVPMTRGILATIYAKLKDGSLTEEDLRKLYEEFYADEPFVRVLPKGEGE 294 (361)
T ss_pred -CCCCCHHHHHHHHHHHHCCCCCEEEEEEEEECCCCCCCEEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCC
T ss_conf -9850279999987676304487279998631262353201276872689988899999999971279717982277898
Q ss_pred CCCHHHHCCCCCEEEEEEEECCCCCCEEEEEEEECCHHHHHHHHHHHHHHHHH
Q ss_conf 97615434897326752776366888699999701302236799999999988
Q gi|254780307|r 280 YITPVESIRRDLVFVSRIRKDPTLKSGLNLWIVANNLRKGAALNAVQIAELVA 332 (335)
Q Consensus 280 ~~~~~~~~g~~~v~Vgrvr~~~~~~~~~~~~~~~DNL~kGAAg~AVq~anlm~ 332 (335)
+|.+++|.|+|.|+||.+..|... +.+.+++++|||+||||||||||||||+
T Consensus 295 ~P~tk~V~GsN~cdIGG~~~d~~~-~r~vv~SaIDNLvKGAAGQAvQN~N~m~ 346 (361)
T TIGR01850 295 YPSTKAVRGSNFCDIGGFAVDERT-GRVVVVSAIDNLVKGAAGQAVQNMNLMF 346 (361)
T ss_pred CCCEEEEEECCCEEEEEEEEECCC-CEEEEEEECCHHHHHHHHHHHHHHHHHC
T ss_conf 786147753583887337886578-8899998521124679999999998635
No 9
>PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=100.00 E-value=0 Score=541.15 Aligned_cols=301 Identities=39% Similarity=0.534 Sum_probs=249.7
Q ss_pred CC-EEEEEECCCCHHHHHHHHHHHHCCCCEEEEEEEE-CCCCCCEEEEC------------CCCEEEEEECCHHHHCCCC
Q ss_conf 96-1799981667789999999974499807899997-47658756002------------7815899877943631884
Q gi|254780307|r 1 MT-FKVAVVGATGNVGREMLNIICERGFPISEVVALA-SERSAGTKVPF------------GKETIDVQDVKSYDFSDTD 66 (335)
Q Consensus 1 M~-~kvaIiGatG~vG~el~~lL~~~~~p~~~l~~~~-s~~~~G~~i~~------------~~~~~~~~~~~~~~~~~~D 66 (335)
|+ |||||+|||||||+||+|+|. +||++|+.+++ |++++|+++.. ...++.++++++++++++|
T Consensus 1 M~kikvaIvGatGy~G~ELirlL~--~HP~~ei~~l~aS~~~aGk~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~D 78 (350)
T PRK08664 1 MDKLKVGVLGATGLVGQRFVQLLA--NHPWFEVTALAASERSAGKTYGEAVRWQLDGPIPEEVADLEVVSTDPVDVDDVD 78 (350)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHH--CCCCCEEEEEEECCCCCCCCHHHHHCCCCCCCCCCCCCCEEEEECCHHHHCCCC
T ss_conf 997779998984299999999997--099966899996553378841552032234667644465079868845743899
Q ss_pred EEEECCCHHHHHHHHHHHCCCCEEEEECCCCHHCCCCCCCCCCCHHHHHHCCC--------CCCCEECCCCCCCCCCCCC
Q ss_conf 78606875899999975045651799614510011211123641011111033--------3431212676432221112
Q gi|254780307|r 67 ICLMSAGHAVSSQMSPKIAANGCIVIDNSSAWRYDSDVPLIVPEVNPQTISLA--------SRKNIIANPNCSTIQLVVA 138 (335)
Q Consensus 67 ivf~a~p~~~s~~~~~~~~~~g~~VIDlS~~~R~~~d~p~~lPein~~~i~~~--------~~~~~VanPgC~at~~~l~ 138 (335)
++|+|+||++|+++++++.++|++|||+|+|||++++|||++||+|++++... ++.++|||||||+|+++|+
T Consensus 79 vvF~AlPhg~s~~~~~~l~~~g~~VIDlSadfRl~~~~p~~~pE~n~~~~~~~~~~~~~~~~~~~lIanPGCy~Ta~~La 158 (350)
T PRK08664 79 IVFSALPSDVAAEVEEEFAKAGKPVFSNASAHRMDPDVPLVIPEVNPEHLELIEVQRKRRGWDGFIVTNPNCSTIGLTLA 158 (350)
T ss_pred EEEECCCCHHHHHHHHHHHHCCCEEEECCHHHCCCCCCCEECHHHCHHHHHHHHHHHHHCCCCCCEEECCCCHHHHHHHH
T ss_conf 99998982699999999987798899786220355788445420388877346887764134665787797188899998
Q ss_pred CCHHHHCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHEEEE
Q ss_conf 20011017874114652152211232110000000000001245544445510137404225532347200001101121
Q gi|254780307|r 139 LKPLHDLAMIKRVVVTTYQSVSGAGKKGIDELLAQTKAFLAKKTIENRVFTKNIAFNVIPHIDVFMDGGSTKEEWKVLVE 218 (335)
Q Consensus 139 L~PL~~~~~i~~v~v~s~~g~SGaG~~~~~eL~~q~~~~~~~~~~~~~~~~~~la~n~iP~i~~~~~~g~~~ee~k~~~E 218 (335)
|+||.+. ++++++++++||+|||||++++++ .+..|+.||+.. ++.++..|
T Consensus 159 L~PL~~~-~~~~i~i~~~sgvSGAGk~~~~~~--------------------e~~~N~~py~~~--------~~~~~~~E 209 (350)
T PRK08664 159 LKPLMDF-GIERVHVTTMQAISGAGYPGVPSM--------------------DILDNVIPYIGG--------EEEKIEKE 209 (350)
T ss_pred HHHHHHC-CCCEEEEEECCCCCCCCCCCCCCH--------------------HHHCCCCCCCCC--------CCCHHHHH
T ss_conf 8999985-997599994443453661457424--------------------565485355676--------43216789
Q ss_pred EEEEEC---------CCCCCCCCCEEEEEEECCEEEEEEEECCCCCHHHHHHHHHHCCCCEEE-----------CCCCCC
Q ss_conf 000102---------343221120011211021579876724658789998731006983881-----------026889
Q gi|254780307|r 219 TQKILD---------PNIKVSCTAARVPVFIGHAESVNIEFEKDISIKDAVAAINKSKGCIVV-----------DKPDKN 278 (335)
Q Consensus 219 ~~kil~---------~~~~v~~t~~~vPv~rG~~~ti~i~l~~~~~~~~i~~~~~~~~~~~~~-----------~~~~~~ 278 (335)
+.|+|+ ..++++||||+||++|||+.|+|++++++++.++++++|++|++...+ ...+..
T Consensus 210 ~~~il~~~~~~~~~~~~~~v~ftphlvP~~RGil~Tiyv~l~~~~~~~~i~~~~~~~~~~~~~~~l~~~p~~~i~v~~~~ 289 (350)
T PRK08664 210 TLKILGKFEGGKIVPADFKISATCHRVPVIDGHTEAVFVTFKEKVDPEEIIEALENFKGLPQELGLPTAPEKPIIVREEP 289 (350)
T ss_pred HHHHHCCCCCCCCCCCCCEEEEEEEECCCCCCEEEEEEEEECCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEECCC
T ss_conf 99985522235444568608999898253055899999996999999999999986628863235666788748980789
Q ss_pred CCCCHH---HHCCCCCEEEEEEEECCCCCCEEEEEEEECCHHHHHHHHHHHHHHHHHHH
Q ss_conf 997615---43489732675277636688869999970130223679999999998853
Q gi|254780307|r 279 EYITPV---ESIRRDLVFVSRIRKDPTLKSGLNLWIVANNLRKGAALNAVQIAELVAQE 334 (335)
Q Consensus 279 ~~~~~~---~~~g~~~v~Vgrvr~~~~~~~~~~~~~~~DNL~kGAAg~AVq~anlm~~~ 334 (335)
.+|++. .+.+.+.|.|||++.+ ..+.+.+|+++|||+||||||||||||||.+|
T Consensus 290 ~~P~~~~~~~~~~~~~v~vg~~~~~--~~~~l~~~s~iDNL~KGAAGQAVQnmNlM~~~ 346 (350)
T PRK08664 290 DRPQPRLDRDAGNGMAVSVGRLRED--GIFDIKFVVLGHNTVRGAAGASVLNAELLKKK 346 (350)
T ss_pred CCCCCEEEEECCCCEEEEEEEEEEC--CCCEEEEEEEEHHHHHHHHHHHHHHHHHHHHC
T ss_conf 8775215431589716999778807--99829999993575676999999999999984
No 10
>TIGR00978 asd_EA aspartate-semialdehyde dehydrogenase; InterPro: IPR005676 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see . Aspartate-semialdehyde dehydrogenase, the second enzyme in the aspartate pathway, converts aspartyl phosphate to aspartate-semialdehyde, the branch point intermediate between the lysine and threonine/methionine pathways. Based on sequence alignments, the aspartate-semialdehyde dehydrogenase family appears to have two distinct subgroups, one found in most bacteria (Gram-positve and Gram-negative), while the other is found primarily in organisms lacking peptidoglycan (archaea,fungi and some bacteria). Most studies have been performed on enzymes isolated from Gram-negative bacteria , , , . The N-terminal domain forms the active site and NADP-binding pocket, while C-terminal domain is primarily involved in hydrophobic intersubunit contacts. The catalytic mechanism involves the formation of a covalent thioester acyl-enzyme intermediate mediated through nucleophilic attack by an active site cysteine residue on the substrate aspartyl phosphate. Release of inorganic phosphate is followed by hydride transfer from NADPH to yield the product. The recently described archaeal structure suggests that the two subgroups of aspartate semi-aldehyde dehydrogenase share similar structures and have an identical catalytic mechanism, despite their relatively low sequence identity . Unlike the bacterial enzymes, the archaeal enzyme utilised both NAD and NADP as cofactor. This entry represents the subgroup of aspartate dehydrogenases found primarily in organisms lacking peptidoglycan. In addition to its role in aspartate metabolism, the enzyme from Sulfolobus solfataricus has been shown recently to exhibit RNase activity, suggesting that these enzymes may perform additional cellular functions .; GO: 0004073 aspartate-semialdehyde dehydrogenase activity, 0009086 methionine biosynthetic process, 0009088 threonine biosynthetic process.
Probab=100.00 E-value=0 Score=541.44 Aligned_cols=301 Identities=41% Similarity=0.596 Sum_probs=274.6
Q ss_pred EEEEEECCCCHHHHHHHHHHHHCCCC-EEEEEEE-ECCCCCCEEE--------------ECCCCEEEEEECCHH----HH
Q ss_conf 17999816677899999999744998-0789999-7476587560--------------027815899877943----63
Q gi|254780307|r 3 FKVAVVGATGNVGREMLNIICERGFP-ISEVVAL-ASERSAGTKV--------------PFGKETIDVQDVKSY----DF 62 (335)
Q Consensus 3 ~kvaIiGatG~vG~el~~lL~~~~~p-~~~l~~~-~s~~~~G~~i--------------~~~~~~~~~~~~~~~----~~ 62 (335)
||||++||||+|||.|++||++| | +|+|..+ +|++++||+. +...+++.+...++. |-
T Consensus 1 ~~VavLGaTG~VGq~f~~lL~~H--Pr~Fe~~~v~AS~~saGk~Yge~~~W~~~~~g~~Pe~~~dl~i~~~~p~ri~~d~ 78 (358)
T TIGR00978 1 VRVAVLGATGLVGQKFVKLLEKH--PRYFELAKVVASERSAGKRYGEVVKWREILSGDIPEEVRDLEIVETEPVRIAEDH 78 (358)
T ss_pred CEEEEEECCCHHHHHHHHHHHHC--CCEEEEEEEEECCCCCCCCHHHHHHHCCCCCCCCCHHHCCCEEECCCCCEEEECC
T ss_conf 96899706554689999997526--9812288988368655767445430121236858432347654134743356617
Q ss_pred CCCCEEEECCCHHHHHHHHHHHCCCCEEEEECCCCHHCCCCCCCCCCCHHHHHHCCCCCCC--------EECCCCCCCCC
Q ss_conf 1884786068758999999750456517996145100112111236410111110333431--------21267643222
Q gi|254780307|r 63 SDTDICLMSAGHAVSSQMSPKIAANGCIVIDNSSAWRYDSDVPLIVPEVNPQTISLASRKN--------IIANPNCSTIQ 134 (335)
Q Consensus 63 ~~~Divf~a~p~~~s~~~~~~~~~~g~~VIDlS~~~R~~~d~p~~lPein~~~i~~~~~~~--------~VanPgC~at~ 134 (335)
.++||||+|||+++|.+++++++++|+.|+++|++||||||||+++||||+++++.++.|+ +|.||||++.+
T Consensus 79 ~dVD~vfSALp~~~A~~~E~~la~~G~~VfSNAs~~RmdpdVPli~PEVN~~hL~l~~~Q~~RrgW~G~ivtNPNC~t~~ 158 (358)
T TIGR00978 79 KDVDIVFSALPSEVAEEVEPKLAEEGIIVFSNASAHRMDPDVPLIVPEVNSDHLELLKVQKERRGWKGFIVTNPNCTTAG 158 (358)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCEEECCCCHHHHHHHHHCCCCCCCCCEEEECCHHHHHH
T ss_conf 98269981499799999999998569889876847788888677833356147999985400168861799576167887
Q ss_pred CCCCCCHHHHCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHH
Q ss_conf 11122001101787411465215221123211000000000000124554444551013740422553234720000110
Q gi|254780307|r 135 LVVALKPLHDLAMIKRVVVTTYQSVSGAGKKGIDELLAQTKAFLAKKTIENRVFTKNIAFNVIPHIDVFMDGGSTKEEWK 214 (335)
Q Consensus 135 ~~l~L~PL~~~~~i~~v~v~s~~g~SGaG~~~~~eL~~q~~~~~~~~~~~~~~~~~~la~n~iP~i~~~~~~g~~~ee~k 214 (335)
+.|+|+||.+.+.+++|+|+||||+||||++|+.+ +.|-.|+||||. +||+|
T Consensus 159 lTl~LkPl~d~~~~~~V~v~TmQAvSGAGY~GVp~--------------------~~I~dN~iP~I~--------GEE~K 210 (358)
T TIGR00978 159 LTLALKPLIDAFGIKKVIVTTMQAVSGAGYPGVPS--------------------MDILDNVIPHIG--------GEEEK 210 (358)
T ss_pred HHHHHHHHHHCCCCCEEEEEEECCHHCCCCCCCCH--------------------HHHHCCCCCCCC--------CHHHH
T ss_conf 76101346430584569998720001488888754--------------------555336165506--------33589
Q ss_pred EEEEEEEEE-CC---------CCCCCCCCEEEEEEECCEEEEEEEECCCCCHHHHHHHHHHCC--------------CCE
Q ss_conf 112100010-23---------432211200112110215798767246587899987310069--------------838
Q gi|254780307|r 215 VLVETQKIL-DP---------NIKVSCTAARVPVFIGHAESVNIEFEKDISIKDAVAAINKSK--------------GCI 270 (335)
Q Consensus 215 ~~~E~~kil-~~---------~~~v~~t~~~vPv~rG~~~ti~i~l~~~~~~~~i~~~~~~~~--------------~~~ 270 (335)
+..|++||| |+ ++.+++||+||||++||+..+|++|+++++.+||++.|++|. ++.
T Consensus 211 Ie~E~~KilsGkl~~g~~~PA~~~~~at~~RVPV~~GHt~~v~v~~~~~~d~~EI~~~~~~f~~~Pq~l~lP~~P~~p~~ 290 (358)
T TIGR00978 211 IERETLKILSGKLENGKIEPAEFEVSATTTRVPVLDGHTESVHVEFDKKFDIEEIREALKSFRGLPQKLGLPSAPEKPII 290 (358)
T ss_pred HHHHHHHHHCCCCCCCEEEEECCEEEEEEEECCCCCCCEEEEEEEECCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCEE
T ss_conf 87621333344003884642044068998744411164699999866877989999999840677642577988695379
Q ss_pred EECCCCCCCCCCHHH-----HCCCCCEEEEEEEECCCCCCEEEEEEEECCHHHHHHHHHHHHHHHHHH
Q ss_conf 810268899976154-----348973267527763668886999997013022367999999999885
Q gi|254780307|r 271 VVDKPDKNEYITPVE-----SIRRDLVFVSRIRKDPTLKSGLNLWIVANNLRKGAALNAVQIAELVAQ 333 (335)
Q Consensus 271 ~~~~~~~~~~~~~~~-----~~g~~~v~Vgrvr~~~~~~~~~~~~~~~DNL~kGAAg~AVq~anlm~~ 333 (335)
+.|+++++|.....+ ..+.|.|+|||+|.+....+.+++++++|||+|||||.++.|||++.+
T Consensus 291 ~~d~edrPQPrlD~~nGGsa~~~GM~V~vGRlr~~~~f~~~l~~VVLghNLVRGAAG~~lLnaEl~~~ 358 (358)
T TIGR00978 291 VRDEEDRPQPRLDRDNGGSAAGKGMAVTVGRLREDSGFRGSLKYVVLGHNLVRGAAGATLLNAELAYK 358 (358)
T ss_pred EECCCCCCCCHHHHCCCCCCCCCCCEEEEEEEEECCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHC
T ss_conf 87588678504420258621268967897536434355551137997233125888999999998609
No 11
>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated
Probab=100.00 E-value=0 Score=524.93 Aligned_cols=297 Identities=27% Similarity=0.363 Sum_probs=244.9
Q ss_pred EEEEEECCCCHHHHHHHHHHHHCCCCEEEEEEEECCCCCCEEEE------CCCCEEEEEECCHHHH-CCCCEEEECCCHH
Q ss_conf 17999816677899999999744998078999974765875600------2781589987794363-1884786068758
Q gi|254780307|r 3 FKVAVVGATGNVGREMLNIICERGFPISEVVALASERSAGTKVP------FGKETIDVQDVKSYDF-SDTDICLMSAGHA 75 (335)
Q Consensus 3 ~kvaIiGatG~vG~el~~lL~~~~~p~~~l~~~~s~~~~G~~i~------~~~~~~~~~~~~~~~~-~~~Divf~a~p~~ 75 (335)
|||||+|||||||+||+|+|.+| |++++.+++|++++|+.+. .+..++.+++++++++ .++|++|+|+|++
T Consensus 2 ~kVaIvGAtG~vG~eli~lL~~h--p~~ei~~las~~saGk~i~~~~p~l~~~~~~~~~~~~~~~~~~~~Divf~alp~~ 79 (345)
T PRK00436 2 IKVAIVGASGYTGGELLRLLLNH--PEVEIVYLTSRSSAGKPLSDLHPHLRGLVDLVLEPLDPEEIAAGADVVFLALPHG 79 (345)
T ss_pred CEEEEECCCCHHHHHHHHHHHCC--CCCEEEEEECCCCCCCCHHHHCCCCCCCCCCEEEECCHHHHCCCCCEEEECCCHH
T ss_conf 19999896618899999999809--9867999975786897377858110377787476499889426999999889838
Q ss_pred HHHHHHHHHCCCCEEEEECCCCHHCCC-------------------CCCCCCCCHHHHHHCCCCCCCEECCCCCCCCCCC
Q ss_conf 999999750456517996145100112-------------------1112364101111103334312126764322211
Q gi|254780307|r 76 VSSQMSPKIAANGCIVIDNSSAWRYDS-------------------DVPLIVPEVNPQTISLASRKNIIANPNCSTIQLV 136 (335)
Q Consensus 76 ~s~~~~~~~~~~g~~VIDlS~~~R~~~-------------------d~p~~lPein~~~i~~~~~~~~VanPgC~at~~~ 136 (335)
+|+++++++.++|++|||+|+||||++ +|.|++||+|++.++.. ++|||||||||+++
T Consensus 80 ~S~~~~~~~~~~g~~VID~SsdfR~~~~~~~~~~Y~~~h~~~~l~~~~vYGlPE~n~~~ik~~---~iIANPgC~at~~~ 156 (345)
T PRK00436 80 VSMELAPQLLEAGVKVIDLSADFRLKDPEVYEKWYGFEHAAPELLKEAVYGLPELNREEIKGA---RLIANPGCYPTASL 156 (345)
T ss_pred HHHHHHHHHHHCCCEEEECCHHHHCCCCCCHHHCCCCCCCCHHHHHHHEECCHHHHHHHHHHC---CEECCCCCHHHHHH
T ss_conf 999999999866987998970120367643221058777884463222007602436666325---56007994789999
Q ss_pred CCCCHHHHCCCCC--CEEEEECCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHH
Q ss_conf 1220011017874--11465215221123211000000000000124554444551013740422553234720000110
Q gi|254780307|r 137 VALKPLHDLAMIK--RVVVTTYQSVSGAGKKGIDELLAQTKAFLAKKTIENRVFTKNIAFNVIPHIDVFMDGGSTKEEWK 214 (335)
Q Consensus 137 l~L~PL~~~~~i~--~v~v~s~~g~SGaG~~~~~eL~~q~~~~~~~~~~~~~~~~~~la~n~iP~i~~~~~~g~~~ee~k 214 (335)
++|+||++.+.++ +|+++++||+|||||++.+++.. + .+..|+.|| +...|.|.+|
T Consensus 157 laL~PL~~~~li~~~~iiv~a~sg~SGAGk~~~~~~~~----------------~-e~~~n~~~Y--~~~~HrH~pE--- 214 (345)
T PRK00436 157 LALAPLLKAGLIDPDSIIIDAKSGVSGAGRKASEGSLF----------------S-EVNENLRAY--GVGGHRHTPE--- 214 (345)
T ss_pred HHHHHHHHHCCCCCCCEEEEEEEECCCCCCCCCHHHHH----------------H-HHHCCEECC--CCCCCCCCHH---
T ss_conf 99999998378666846999877445366586400025----------------7-772456025--4678787189---
Q ss_pred EEEEEEEEECCCCCCCCCCEEEEEEECCEEEEEEEECCCCCHHHHHHHHHHC----CCCEEECCCCCCCCCCHHHHCCCC
Q ss_conf 1121000102343221120011211021579876724658789998731006----983881026889997615434897
Q gi|254780307|r 215 VLVETQKILDPNIKVSCTAARVPVFIGHAESVNIEFEKDISIKDAVAAINKS----KGCIVVDKPDKNEYITPVESIRRD 290 (335)
Q Consensus 215 ~~~E~~kil~~~~~v~~t~~~vPv~rG~~~ti~i~l~~~~~~~~i~~~~~~~----~~~~~~~~~~~~~~~~~~~~~g~~ 290 (335)
+.++++++. +...++|||||||++|||+.|++++|+++++.++++++|+++ +++.+.+ ...+|+|.++.|+|
T Consensus 215 i~q~l~~~~-~~~~v~ftp~~vPv~rGi~~ti~~~~~~~~s~~~i~~~l~~~Y~~~pfV~v~~---~~~~P~~~~v~gtn 290 (345)
T PRK00436 215 IEQELSGLA-GEVVVSFTPHLVPMTRGILATIYARLKDGVTAEDLRAAYEEFYADEPFVRVLP---EGQYPETKSVRGSN 290 (345)
T ss_pred HHHHHHHHC-CCCEEEEEEEECCCCCEEEEEEEEEECCCCCHHHHHHHHHHHHCCCCCEEECC---CCCCCCHHHHCCCC
T ss_conf 999987308-99718998366376660689999995798636778899999836898689858---99999877816987
Q ss_pred CEEEEEEEECCCCCCEEEEEEEECCHHHHHHHHHHHHHHHHH
Q ss_conf 326752776366888699999701302236799999999988
Q gi|254780307|r 291 LVFVSRIRKDPTLKSGLNLWIVANNLRKGAALNAVQIAELVA 332 (335)
Q Consensus 291 ~v~Vgrvr~~~~~~~~~~~~~~~DNL~kGAAg~AVq~anlm~ 332 (335)
.|+||+.+ +. ..+.+++|+++|||+||||||||||||||+
T Consensus 291 ~~~ig~~~-d~-~~~~l~i~s~~DNL~KGAAgqAVQn~Nl~~ 330 (345)
T PRK00436 291 FCDIGFAV-DE-RTGRLVVVSAIDNLVKGAAGQAVQNMNLMF 330 (345)
T ss_pred CEEEEEEE-EC-CCCEEEEEEECCCCCHHHHHHHHHHHHHHC
T ss_conf 18999998-08-999899999850334308999999999880
No 12
>PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional
Probab=100.00 E-value=0 Score=485.05 Aligned_cols=294 Identities=19% Similarity=0.190 Sum_probs=230.6
Q ss_pred CCEEEEEECCCCHHHHHHHHHHHHCCCCEEEEEEEECCCCCCEEEECCCCEEEEEECCHHHHCCCCEEEECCCHHHHHHH
Q ss_conf 96179998166778999999997449980789999747658756002781589987794363188478606875899999
Q gi|254780307|r 1 MTFKVAVVGATGNVGREMLNIICERGFPISEVVALASERSAGTKVPFGKETIDVQDVKSYDFSDTDICLMSAGHAVSSQM 80 (335)
Q Consensus 1 M~~kvaIiGatG~vG~el~~lL~~~~~p~~~l~~~~s~~~~G~~i~~~~~~~~~~~~~~~~~~~~Divf~a~p~~~s~~~ 80 (335)
|++||+|+|||||+|.||+|+|. +||.+||..+.+.+... .....+.+.++|++|+|+||++|+++
T Consensus 1 M~~kV~I~GasGytG~EL~rlL~--~Hp~vel~~i~~~~~k~------------~~~~~~~~~~~DvvFlalPh~~s~~~ 66 (314)
T PRK11863 1 MKPKVFIDGEAGTTGLQIRERLA--GRSDIELLSIPEAKRKD------------PAARRELLNAADIAILCLPDDAAREA 66 (314)
T ss_pred CCCEEEEECCCCCHHHHHHHHHH--CCCCEEEEEECCCCCCC------------HHHHHHHHHCCCEEEECCCCHHHHHH
T ss_conf 98269998998856999999997--59982999967112557------------55678775069999999997789999
Q ss_pred HHHHCCCCEEEEECCCCHHCCCCCCCCCCCHHHHHHCCCCCCCEECCCCCCCCCCCCCCCHHHHCCCCCC---EEEEECC
Q ss_conf 9750456517996145100112111236410111110333431212676432221112200110178741---1465215
Q gi|254780307|r 81 SPKIAANGCIVIDNSSAWRYDSDVPLIVPEVNPQTISLASRKNIIANPNCSTIQLVVALKPLHDLAMIKR---VVVTTYQ 157 (335)
Q Consensus 81 ~~~~~~~g~~VIDlS~~~R~~~d~p~~lPein~~~i~~~~~~~~VanPgC~at~~~l~L~PL~~~~~i~~---v~v~s~~ 157 (335)
++.+.+.|++|||||+|||++++|+|++||+|+++.+.++..++|||||||||+++++|+||.+++.|+. |++++++
T Consensus 67 v~~~~~~g~kVIDLSaDfRl~~~wvYGlPEl~~~~r~~I~~a~~IAnPGCyaTa~iL~L~PL~~~gli~~~~~i~i~a~S 146 (314)
T PRK11863 67 VALIDNPATRVIDASTAHRTAPGWVYGFPELAPGQRERIAAARRVANPGCYPTGAIALLRPLVDAGLLPADYPVSINAVS 146 (314)
T ss_pred HHHHHHCCCEEEECCCCCCCCCCCEEECCCCCHHHHHHHHHCCEEECCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEEEC
T ss_conf 99886279889989854457999773365068778999862986327982899999999999976887888846998410
Q ss_pred CCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHEEEEEEEEECCCCCCCCCCEEEE
Q ss_conf 22112321100000000000012455444455101374042255323472000011011210001023432211200112
Q gi|254780307|r 158 SVSGAGKKGIDELLAQTKAFLAKKTIENRVFTKNIAFNVIPHIDVFMDGGSTKEEWKVLVETQKILDPNIKVSCTAARVP 237 (335)
Q Consensus 158 g~SGaG~~~~~eL~~q~~~~~~~~~~~~~~~~~~la~n~iP~i~~~~~~g~~~ee~k~~~E~~kil~~~~~v~~t~~~vP 237 (335)
|+|||||+..+.... ...+......+.|...+.|+|+|+|.+. ++...++.|+||.+|
T Consensus 147 G~SGAGk~~~~~~~~---~~~~~~~~~~~~Y~~~~~HrH~pEI~q~-------------------~~~~~~~~F~Phl~p 204 (314)
T PRK11863 147 GYSGGGKAMIAAYEA---GGPKGTAPAFRLYGLGLAHKHLPEMQAH-------------------AGLARRPIFVPSVGN 204 (314)
T ss_pred CCCCCCCCCCCCCCC---CCCCCCCCCCCCCCCCCCCCCHHHHHHH-------------------HCCCCCCCEEEEECC
T ss_conf 256677665323446---5421233453113687675789999998-------------------588887523111557
Q ss_pred EEECCEEEEEEE---ECCCCCHHHHHHHHHHC----CCCEEECCC--CCCCCCCHHHHCCCCCEEEEEEEECCCCCCEEE
Q ss_conf 110215798767---24658789998731006----983881026--889997615434897326752776366888699
Q gi|254780307|r 238 VFIGHAESVNIE---FEKDISIKDAVAAINKS----KGCIVVDKP--DKNEYITPVESIRRDLVFVSRIRKDPTLKSGLN 308 (335)
Q Consensus 238 v~rG~~~ti~i~---l~~~~~~~~i~~~~~~~----~~~~~~~~~--~~~~~~~~~~~~g~~~v~Vgrvr~~~~~~~~~~ 308 (335)
++||++.|+|++ +.++++.++++++|+++ +++++.+.. +....+.|+.+.|+|.|.|| +..+. ..+.+.
T Consensus 205 ~~RGIl~Tiy~~~~~l~~~~~~~~i~~~y~~~Y~~epFV~v~~~~~~~~~~~v~~~~v~gtN~~~I~-v~~d~-~~~~~v 282 (314)
T PRK11863 205 FRQGMLVTVPLHLDLLPGGPTGEDLHAALADHYAGEAFVRVAPLEESAALDRLDPEALNGTNRLELF-VFGNE-EHGQAV 282 (314)
T ss_pred CCCEEEEEEECCHHHCCCCCCHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCCCCCEEEEE-EEEEC-CCCEEE
T ss_conf 4760469952246651789999999999999868999789947888876563342234899648999-99708-999999
Q ss_pred EEEEECCHHHHHHHHHHHHHHHHH
Q ss_conf 999701302236799999999988
Q gi|254780307|r 309 LWIVANNLRKGAALNAVQIAELVA 332 (335)
Q Consensus 309 ~~~~~DNL~kGAAg~AVq~anlm~ 332 (335)
+++++|||+||||||||||||||+
T Consensus 283 v~saIDNL~KGAAGQAVQnmNlm~ 306 (314)
T PRK11863 283 LVARLDNLGKGASGAAVQNLNLML 306 (314)
T ss_pred EEEECCCCCCCHHHHHHHHHHHHC
T ss_conf 999831457257999999999871
No 13
>COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=100.00 E-value=0 Score=484.29 Aligned_cols=303 Identities=23% Similarity=0.340 Sum_probs=243.0
Q ss_pred CCEEEEEECCCCHHHHHHHHHHHHCCCCEEEEEEEECCCCCCEEEECCC------CEEEEEECCHHH--HCCCCEEEECC
Q ss_conf 9617999816677899999999744998078999974765875600278------158998779436--31884786068
Q gi|254780307|r 1 MTFKVAVVGATGNVGREMLNIICERGFPISEVVALASERSAGTKVPFGK------ETIDVQDVKSYD--FSDTDICLMSA 72 (335)
Q Consensus 1 M~~kvaIiGatG~vG~el~~lL~~~~~p~~~l~~~~s~~~~G~~i~~~~------~~~~~~~~~~~~--~~~~Divf~a~ 72 (335)
|++||+|+|||||+|.||+|+|. +||.+|+...+|++.+|+.+..-. -++.++..++.. ..++|+||+|+
T Consensus 1 ~~~kV~IvGasGYtG~EL~rlL~--~Hp~ve~~~~ss~~~~g~~~~~~~p~l~g~~~l~~~~~~~~~~~~~~~DvvFlal 78 (349)
T COG0002 1 MMIKVGIVGASGYTGLELLRLLA--GHPDVELILISSRERAGKPVSDVHPNLRGLVDLPFQTIDPEKIELDECDVVFLAL 78 (349)
T ss_pred CCCEEEEECCCCCCHHHHHHHHH--CCCCEEEEEEECHHHCCCCHHHHCCCCCCCCCCCCCCCCHHHHHCCCCCEEEEEC
T ss_conf 98159997788774899999986--5997379996316645870687582423534554335774553015688899906
Q ss_pred CHHHHHHHHHHHCCCCEEEEECCCCHHCC-------------------CCCCCCCCCHHHHHHCCCCCCCEECCCCCCCC
Q ss_conf 75899999975045651799614510011-------------------21112364101111103334312126764322
Q gi|254780307|r 73 GHAVSSQMSPKIAANGCIVIDNSSAWRYD-------------------SDVPLIVPEVNPQTISLASRKNIIANPNCSTI 133 (335)
Q Consensus 73 p~~~s~~~~~~~~~~g~~VIDlS~~~R~~-------------------~d~p~~lPein~~~i~~~~~~~~VanPgC~at 133 (335)
||++|+++++++.++|++|||||+|||++ ++|+|++||+++|.|+.++ +|||||||+|
T Consensus 79 Phg~s~~~v~~l~~~g~~VIDLSadfR~~d~~~ye~~Yg~~h~~~~~l~~avYGLpEl~~e~i~~A~---lIAnPGCypT 155 (349)
T COG0002 79 PHGVSAELVPELLEAGCKVIDLSADFRLKDPEVYEKWYGFTHAGPELLEDAVYGLPELHREKIRGAK---LIANPGCYPT 155 (349)
T ss_pred CCHHHHHHHHHHHHCCCEEEECCCCCCCCCHHHHHHHHCCCCCCCHHHHCCCCCCCCCCHHHHHCCC---EEECCCCHHH
T ss_conf 8636889899997479949988732005777777886277777801331543347312988883387---7367983288
Q ss_pred CCCCCCCHHHHCCCCC--C-EEEEECCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 2111220011017874--1-146521522112321100000000000012455444455101374042255323472000
Q gi|254780307|r 134 QLVVALKPLHDLAMIK--R-VVVTTYQSVSGAGKKGIDELLAQTKAFLAKKTIENRVFTKNIAFNVIPHIDVFMDGGSTK 210 (335)
Q Consensus 134 ~~~l~L~PL~~~~~i~--~-v~v~s~~g~SGaG~~~~~eL~~q~~~~~~~~~~~~~~~~~~la~n~iP~i~~~~~~g~~~ 210 (335)
+.+|+|+||.+.+.|. . ++|++++|+|||||++.... .+.. ...|+.||- ...|.|+
T Consensus 156 a~iLal~PL~~~~ll~~~~~~ivdakSG~SGaGrk~s~~~--------~~~e---------~~~~~~~Y~--~~~HrH~- 215 (349)
T COG0002 156 AAILALAPLVKAGLLDPDSPPIVDAKSGVSGAGRKASVKN--------HFPE---------VNDSLRPYG--LTGHRHT- 215 (349)
T ss_pred HHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCCCCCCCCC--------CCHH---------HCCCCCCCC--CCCCCCH-
T ss_conf 9999888998769978888648997674676787853002--------5511---------036633354--4566765-
Q ss_pred HHHHEEEEEEEEECCCCCCCCCCEEEEEEECCEEEEEEEECCCCCHHHHHHHHHHCCCCE-EECCCCCCCCCCHHHHCCC
Q ss_conf 011011210001023432211200112110215798767246587899987310069838-8102688999761543489
Q gi|254780307|r 211 EEWKVLVETQKILDPNIKVSCTAARVPVFIGHAESVNIEFEKDISIKDAVAAINKSKGCI-VVDKPDKNEYITPVESIRR 289 (335)
Q Consensus 211 ee~k~~~E~~kil~~~~~v~~t~~~vPv~rG~~~ti~i~l~~~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~ 289 (335)
.++.++++++-+...+++||||.+|+.|||+.|+|+.++++++.+|++++|+++|.-. ++...+...+|.++.+.|+
T Consensus 216 --pEi~q~l~~l~~~~~~v~FtPhl~p~~RGIl~Ti~~~l~~~~t~~~i~~~y~~~Y~~epfVrv~~~~~~P~~k~V~Gs 293 (349)
T COG0002 216 --PEIEQHLGRLAGRKVPVIFTPHLGPFVRGILATIYLKLKDLVTLEELHAAYEEFYAGEPFVRVVPEGGYPDTKAVAGS 293 (349)
T ss_pred --HHHHHHHHHHCCCCCCEEEECEECCCCCEEEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHCCC
T ss_conf --999998601016767617852066612508999887418888999999999998679986997068899974551588
Q ss_pred CCEEEEEEEECCCCCCEEEEEEEECCHHHHHHHHHHHHHHHHH
Q ss_conf 7326752776366888699999701302236799999999988
Q gi|254780307|r 290 DLVFVSRIRKDPTLKSGLNLWIVANNLRKGAALNAVQIAELVA 332 (335)
Q Consensus 290 ~~v~Vgrvr~~~~~~~~~~~~~~~DNL~kGAAg~AVq~anlm~ 332 (335)
|.|+|| +..+.. .+.+.+++++|||+||||||||||||+|+
T Consensus 294 N~cdIg-f~~d~~-~~rvvvvsaIDNL~KGAAGQAVQnmNim~ 334 (349)
T COG0002 294 NFCDIG-FAVDER-TGRVVVVSAIDNLVKGAAGQAVQNMNIMF 334 (349)
T ss_pred CCEEEE-EEECCC-CCEEEEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 632898-887587-88899999701002347889999999872
No 14
>KOG4354 consensus
Probab=100.00 E-value=0 Score=353.95 Aligned_cols=294 Identities=24% Similarity=0.307 Sum_probs=235.1
Q ss_pred EEEEEECCCCHHHHHHHHHHHHCCCCEEEEEEEECCCCCCEEEE-CCCCEEEEEECCHHHH------CCCCEEEECCCHH
Q ss_conf 17999816677899999999744998078999974765875600-2781589987794363------1884786068758
Q gi|254780307|r 3 FKVAVVGATGNVGREMLNIICERGFPISEVVALASERSAGTKVP-FGKETIDVQDVKSYDF------SDTDICLMSAGHA 75 (335)
Q Consensus 3 ~kvaIiGatG~vG~el~~lL~~~~~p~~~l~~~~s~~~~G~~i~-~~~~~~~~~~~~~~~~------~~~Divf~a~p~~ 75 (335)
.||+++||+||+|.+|++|+. +||++|+..++|.+-+|++++ |...++...++...|. ..+|...+++|..
T Consensus 20 ~rv~LlGArGYTGknlv~Lin--~HPylevthvssrel~Gqkl~~ytk~eiqy~~lst~D~~klee~~avd~wvmaLPn~ 97 (340)
T KOG4354 20 IRVGLLGARGYTGKNLVRLIN--NHPYLEVTHVSSRELAGQKLEVYTKLEIQYADLSTVDAVKLEEPHAVDHWVMALPNQ 97 (340)
T ss_pred CEEEEEECCCCCHHHHHHHHC--CCCCEEEEEEEHHHHCCCCCCCCCHHHEEECCCCHHHHHHHHCCCCEEEEEEECCHH
T ss_conf 259987336654166998863--897368886322543477156743221232344246678762577645566525415
Q ss_pred HHHHHHHHHCCC-C-EEEEECCCCHHCCC--CCCCCCCCHH-HHHHCCCCCCCEECCCCCCCCCCCCCCCHHHHCCCCCC
Q ss_conf 999999750456-5-17996145100112--1112364101-11110333431212676432221112200110178741
Q gi|254780307|r 76 VSSQMSPKIAAN-G-CIVIDNSSAWRYDS--DVPLIVPEVN-PQTISLASRKNIIANPNCSTIQLVVALKPLHDLAMIKR 150 (335)
Q Consensus 76 ~s~~~~~~~~~~-g-~~VIDlS~~~R~~~--d~p~~lPein-~~~i~~~~~~~~VanPgC~at~~~l~L~PL~~~~~i~~ 150 (335)
+-+.++.....+ | .++||+|+|+|+.| +|.|++||+| +|.|++++. |||||||+|+.+++|-||.+......
T Consensus 98 vckpfv~~~~s~~gks~iidlsad~rf~p~~~w~YGLpElndRe~i~na~~---iaNPGCYaTgsQl~l~Pllk~i~g~p 174 (340)
T KOG4354 98 VCKPFVSLTESSDGKSRIIDLSADWRFQPHKEWVYGLPELNDREDIKNARL---IANPGCYATGSQLPLVPLLKAILGKP 174 (340)
T ss_pred HHHHHHHHHHHCCCCEEEEECCHHHCCCCCHHEEECCCCCCCHHHHHHHHH---CCCCCCCCCCCCCCCHHHHHHHCCCC
T ss_conf 678888887623771466311033347754020106710043888754040---26997324567256447788755886
Q ss_pred EEEEECCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHEEEEEEEEECCCCCCC
Q ss_conf 14652152211232110000000000001245544445510137404225532347200001101121000102343221
Q gi|254780307|r 151 VVVTTYQSVSGAGKKGIDELLAQTKAFLAKKTIENRVFTKNIAFNVIPHIDVFMDGGSTKEEWKVLVETQKILDPNIKVS 230 (335)
Q Consensus 151 v~v~s~~g~SGaG~~~~~eL~~q~~~~~~~~~~~~~~~~~~la~n~iP~i~~~~~~g~~~ee~k~~~E~~kil~~~~~v~ 230 (335)
.|.+.+|+||||+++. ++.-...++.|++|| ...++-|.+| +.+. ..+.|+
T Consensus 175 -~ifgvSGySGAGtkps-----------------pkNd~~~l~nnlipY--~ltdHiHerE---Is~r------~k~~Va 225 (340)
T KOG4354 175 -EIFGVSGYSGAGTKPS-----------------PKNDYSELANNLIPY--GLTDHIHERE---ISQR------SKVTVA 225 (340)
T ss_pred -CEEEECCCCCCCCCCC-----------------CCCCHHHHHCCCCCC--CCCCCCHHHH---HHHH------HCCCEE
T ss_conf -1343125567888989-----------------755788886377653--1222210476---7886------388555
Q ss_pred CCCEEEEEEECCEEEEEEEECCCCCHHHHHHHHHHCCC-CEEECCCCCCCCCCHHHHCCCCCEEEEEEEECCCCCCEEEE
Q ss_conf 12001121102157987672465878999873100698-38810268899976154348973267527763668886999
Q gi|254780307|r 231 CTAARVPVFIGHAESVNIEFEKDISIKDAVAAINKSKG-CIVVDKPDKNEYITPVESIRRDLVFVSRIRKDPTLKSGLNL 309 (335)
Q Consensus 231 ~t~~~vPv~rG~~~ti~i~l~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~v~Vgrvr~~~~~~~~~~~ 309 (335)
|+||..|.|+|+..|+++++++.++.+|+++.|+.++. ..+++..+ +.|...++.|++.|++|.. .+...++...+
T Consensus 226 F~PHv~qwfqGi~lTi~vpmkksv~~~elr~lyk~~YedE~lvhV~d--dvPlvkdv~gsh~v~~ggF-~~~~~g~Ravi 302 (340)
T KOG4354 226 FTPHVMQWFQGIQLTIYVPMKKSVRTEELRQLYKTSYEDEELVHVLD--DVPLVKDVRGSHYVHMGGF-PDRIPGDRAVI 302 (340)
T ss_pred ECHHHHHHHHHCEEEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEEC--CCCCEECCCCCCEEEECCC-CCCCCCCEEEE
T ss_conf 34447887511148999840676568999999874306750046414--6653001577632686356-57888852899
Q ss_pred EEEECCHHHHHHHHHHHHHHHHHH
Q ss_conf 997013022367999999999885
Q gi|254780307|r 310 WIVANNLRKGAALNAVQIAELVAQ 333 (335)
Q Consensus 310 ~~~~DNL~kGAAg~AVq~anlm~~ 333 (335)
++++|||+||||+||.||.||||-
T Consensus 303 i~tIDNLlKGAatQaLQNlNl~~G 326 (340)
T KOG4354 303 ISTIDNLLKGAATQALQNLNLMLG 326 (340)
T ss_pred EEEHHHHHHHHHHHHHHHHHHHHC
T ss_conf 986665653478889875443407
No 15
>KOG4777 consensus
Probab=100.00 E-value=0 Score=356.13 Aligned_cols=314 Identities=32% Similarity=0.449 Sum_probs=248.2
Q ss_pred CCE-EEE-EECCCCHHHHHHHHHHHHCCCCEEEEEEE-ECCCCCCEEEECCC------------CEEEEEECCHHHHCCC
Q ss_conf 961-799-98166778999999997449980789999-74765875600278------------1589987794363188
Q gi|254780307|r 1 MTF-KVA-VVGATGNVGREMLNIICERGFPISEVVAL-ASERSAGTKVPFGK------------ETIDVQDVKSYDFSDT 65 (335)
Q Consensus 1 M~~-kva-IiGatG~vG~el~~lL~~~~~p~~~l~~~-~s~~~~G~~i~~~~------------~~~~~~~~~~~~~~~~ 65 (335)
|.+ |+| |+|+||.|||+++.+|. +||++++..+ +|.+|+||+..+.. .++.+++.+.+.|++|
T Consensus 1 Ma~kk~a~vlGaTGaVGQrFi~lLs--dhP~f~ikvLgAS~RSAGK~ya~a~~wkqt~~lp~~~~e~~V~ec~~~~F~ec 78 (361)
T KOG4777 1 MALKKSAPVLGATGAVGQRFISLLS--DHPYFSIKVLGASKRSAGKRYAFAGNWKQTDLLPESAHEYTVEECTADSFNEC 78 (361)
T ss_pred CCCCCCCCEEECCCHHHHHHHHHHC--CCCCCEEEEECCCCCCCCCCEEECCCCHHCCCCCCHHHHHHHHHCCHHHCCCC
T ss_conf 9733135521034314778999861--69851342301333146981576044112024650343413755584023665
Q ss_pred CEEEECCCHHHHHHHHHHHCCCCEEEEECCCCHHCCCCCCCCCCCHHHHHHCCCCC---------CCEECCCCCCCCCCC
Q ss_conf 47860687589999997504565179961451001121112364101111103334---------312126764322211
Q gi|254780307|r 66 DICLMSAGHAVSSQMSPKIAANGCIVIDNSSAWRYDSDVPLIVPEVNPQTISLASR---------KNIIANPNCSTIQLV 136 (335)
Q Consensus 66 Divf~a~p~~~s~~~~~~~~~~g~~VIDlS~~~R~~~d~p~~lPein~~~i~~~~~---------~~~VanPgC~at~~~ 136 (335)
||+|+.++.+.+.++.+.+.++|..|+|++..||++++||+++||+|+|+++..+. .-+|+||||.+...+
T Consensus 79 DIvfsgldad~ageiek~f~eag~iiVsNaknyRre~~VPLvvP~VNpehld~ik~~~~~~k~~~G~iI~nsNCSTa~~v 158 (361)
T KOG4777 79 DIVFSGLDADIAGEIEKLFAEAGTIIVSNAKNYRREDGVPLVVPEVNPEHLDGIKVGLDTGKMGKGAIIANSNCSTAICV 158 (361)
T ss_pred CEEEECCCCHHHHHHHHHHHHCCEEEEECCHHCCCCCCCCEEECCCCHHHHHHHEECCCCCCCCCCEEEECCCCCEEEEE
T ss_conf 58985278236656547788668699867143025799745733458778425302222588899528966988703687
Q ss_pred CCCCHHHHCC-CCCCEEEEECCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHE
Q ss_conf 1220011017-874114652152211232110000000000001245544445510137404225532347200001101
Q gi|254780307|r 137 VALKPLHDLA-MIKRVVVTTYQSVSGAGKKGIDELLAQTKAFLAKKTIENRVFTKNIAFNVIPHIDVFMDGGSTKEEWKV 215 (335)
Q Consensus 137 l~L~PL~~~~-~i~~v~v~s~~g~SGaG~~~~~eL~~q~~~~~~~~~~~~~~~~~~la~n~iP~i~~~~~~g~~~ee~k~ 215 (335)
++|+||++.| .|.+..++|||++||||.+++.++..++-+.+.+...+...|.-+-++++.|+....+++|...
T Consensus 159 ~plkpL~~~fgpi~~~~v~t~QAiSGAG~apgv~~vdildnilp~iggee~k~ewet~kiL~s~n~~i~~~~l~e----- 233 (361)
T KOG4777 159 MPLKPLHHHFGPIKRMVVSTYQAISGAGAAPGVELVDILDNILPGIGGEENKFEWETAKILFSHNAPILDNGLNE----- 233 (361)
T ss_pred EECHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCH-----
T ss_conf 665467763154455323445563157867773277888743478896200456788876530477521454257-----
Q ss_pred EEEEEEEECCCCCCCCCCEEEEEEECCEEEEEEEECCCC--CHHHHHHHHHHC--------------CCCEEECCCCCCC
Q ss_conf 121000102343221120011211021579876724658--789998731006--------------9838810268899
Q gi|254780307|r 216 LVETQKILDPNIKVSCTAARVPVFIGHAESVNIEFEKDI--SIKDAVAAINKS--------------KGCIVVDKPDKNE 279 (335)
Q Consensus 216 ~~E~~kil~~~~~v~~t~~~vPv~rG~~~ti~i~l~~~~--~~~~i~~~~~~~--------------~~~~~~~~~~~~~ 279 (335)
+..++..|.||++..||...+.+.|+-++ +.+|+..++.+| +++-++|+.. ++
T Consensus 234 ----------e~~vsaqcnRv~v~Dgh~~cis~~f~~~~~pa~~qv~~~l~eyv~d~~klgc~sapkq~iyv~dd~a-pd 302 (361)
T KOG4777 234 ----------EEMVSAQCNRVIVNDGHVKCISTCFRVPVMPAHAQVVNLLFEYVLDENKLGCISAPKQGIYVIDDRA-PD 302 (361)
T ss_pred ----------HHHHHHHCCEEEEECCCEEEEEEEEECCCCCCHHHHHHHHHHCCCCHHHCCCCCCCCCEEEEECCCC-CC
T ss_conf ----------7765421234667567068998886068888689999999864687433223027787479944788-99
Q ss_pred CCCHHHHCCCCC---EEEEEEEECCCCCCEEEEEEEECCHHHHHHHHHHHHHHHHHHH
Q ss_conf 976154348973---2675277636688869999970130223679999999998853
Q gi|254780307|r 280 YITPVESIRRDL---VFVSRIRKDPTLKSGLNLWIVANNLRKGAALNAVQIAELVAQE 334 (335)
Q Consensus 280 ~~~~~~~~g~~~---v~Vgrvr~~~~~~~~~~~~~~~DNL~kGAAg~AVq~anlm~~~ 334 (335)
.|+|....+.+. +.|||+|.|...+ ..|++..+|+.-||||..+.++|+.+++
T Consensus 303 rPqPrldrN~d~gy~VsVGRIR~D~~~D--~kfv~L~hnt~~gaag~G~l~aev~ia~ 358 (361)
T KOG4777 303 RPQPRLDRNKDDGYGVSVGRIRRDVSQD--GKFVVLDHNTCGGAAGKGALLAEVQIAE 358 (361)
T ss_pred CCCCCCCCCCCCCCEEEEEEEECCCCCC--CCEEEEEEEEEHHHHCCHHHHHHHHHHH
T ss_conf 9986413466777405656652153346--5269997502210121115788999886
No 16
>TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase; InterPro: IPR010136 N -Acetylglutamate (NAG) fulfils distinct biological roles in lower and higher organisms. In prokaryotes, lower eukaryotes and plants it is the first intermediate in the biosynthesis of arginine, whereas in ureotelic (excreting nitrogen mostly in the form of urea) vertebrates, it is an essential allosteric cofactor for carbamyl phosphate synthetase I (CPSI), the first enzyme of the urea cycle. The pathway that leads from glutamate to arginine in lower organisms employs eight steps, starting with the acetylation of glutamate to form NAG. In these species, NAG can be produced by two enzymatic reactions: one catalysed by NAG synthase (NAGS) and the other by ornithine acetyltransferase (OAT). In ureotelic species, NAG is produced exclusively by NAGS. In lower organisms, NAGS is feedback-inhibited by L-arginine, whereas mammalian NAGS activity is significantly enhanced by this amino acid. The NAGS genes of bacteria, fungi and mammals are more diverse than other arginine-biosynthesis and urea-cycle genes. The evolutionary relationship between the distinctly different roles of NAG and its metabolism in lower and higher organisms remains to be determined . The pathway from glutamate to arginine is: NAGS; N-acetylglutamate synthase (2.3.1.1 from EC) (glutamate to N-acetylglutamate) NAGK; N-acetylglutamate kinase (2.7.2.8 from EC) (N-acetylglutamate to N-acetylglutamate-5P) NAGSA; N-acetyl-gamma-glutamyl-phosphate reductase (1.2.1.38 from EC) (N-acetylglutamate-5P to N-acetylglumate semialdehyde) Acetylornithine aminotransferase (2.6.1.11 from EC) (N-acetylglumate semialdehyde to N-acetylornithine) Acetylornithine deacetylase (3.5.1.16 from EC) (N-acetylornithine to ornithine) Arginase (3.5.3.1 from EC) (ornithine to arginine) This entry represents bacterial N-acetyl-gamma-glutamyl-phosphate reductases, an enzyme catalysing the third step of arginine biosynthesis from glutamate.; GO: 0003942 N-acetyl-gamma-glutamyl-phosphate reductase activity, 0006526 arginine biosynthetic process, 0005737 cytoplasm.
Probab=100.00 E-value=0 Score=335.93 Aligned_cols=292 Identities=18% Similarity=0.246 Sum_probs=219.6
Q ss_pred CEEEEEECCCCHHHHHHHHHHHHCCCCEEEEEEEECCCCCCEEEECCCCEEEEEECCHHHHCCCCEEEECCCHHHHHHHH
Q ss_conf 61799981667789999999974499807899997476587560027815899877943631884786068758999999
Q gi|254780307|r 2 TFKVAVVGATGNVGREMLNIICERGFPISEVVALASERSAGTKVPFGKETIDVQDVKSYDFSDTDICLMSAGHAVSSQMS 81 (335)
Q Consensus 2 ~~kvaIiGatG~vG~el~~lL~~~~~p~~~l~~~~s~~~~G~~i~~~~~~~~~~~~~~~~~~~~Divf~a~p~~~s~~~~ 81 (335)
+-||.|-|-.|.||.+|.++|.+| ..+||..++.++. ++. +...+-++.+|++|+|||+++|+|-+
T Consensus 1 ~pKvFiDGeaGTTGLqi~~rL~~R--~DleLlsI~~~rR-------KDa-----~~RA~lLNaaDvaiLCLPDdAarEAV 66 (314)
T TIGR01851 1 APKVFIDGEAGTTGLQIRERLSGR--DDLELLSIAPDRR-------KDA-----AERAKLLNAADVAILCLPDDAAREAV 66 (314)
T ss_pred CCCEEECCCCCCHHHHHHHHHCCC--CCHHEEEECCCCC-------CCH-----HHHHHHHHHHHHHHHCCCCHHHHHCE
T ss_conf 995364178886267898862477--6200031063326-------797-----99887754673233348624554300
Q ss_pred HHHCCCCEEEEECCCCHHCCCCCCCCCCCHHHHHHCCCCCCCEECCCCCCCCCCCCCCCHHHHCCCCC---CEEEEECCC
Q ss_conf 75045651799614510011211123641011111033343121267643222111220011017874---114652152
Q gi|254780307|r 82 PKIAANGCIVIDNSSAWRYDSDVPLIVPEVNPQTISLASRKNIIANPNCSTIQLVVALKPLHDLAMIK---RVVVTTYQS 158 (335)
Q Consensus 82 ~~~~~~g~~VIDlS~~~R~~~d~p~~lPein~~~i~~~~~~~~VanPgC~at~~~l~L~PL~~~~~i~---~v~v~s~~g 158 (335)
....+...++||.|.|||..+||.|++||++++|.+.++..+.|||||||+|+.+.-++||...|.+- -|.+.+++|
T Consensus 67 SLv~np~~~ilDASTAyRt~~dW~YGfpEL~~eQREki~~sk~vanPGCY~tg~~aL~rPLv~~GilPA~fPv~~~a~sG 146 (314)
T TIGR01851 67 SLVDNPNTKILDASTAYRTADDWVYGFPELAPEQREKIRNSKRVANPGCYPTGFIALLRPLVEAGILPADFPVTINAVSG 146 (314)
T ss_pred ECCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHCCEECCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEECC
T ss_conf 00268772475154000048774114645787752467605541189851789999974387657776557634556315
Q ss_pred CCCCCCCCCCCHH---HHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHEEEEEEEEECCCCCCCCCCEE
Q ss_conf 2112321100000---0000000124554444551013740422553234720000110112100010234322112001
Q gi|254780307|r 159 VSGAGKKGIDELL---AQTKAFLAKKTIENRVFTKNIAFNVIPHIDVFMDGGSTKEEWKVLVETQKILDPNIKVSCTAAR 235 (335)
Q Consensus 159 ~SGaG~~~~~eL~---~q~~~~~~~~~~~~~~~~~~la~n~iP~i~~~~~~g~~~ee~k~~~E~~kil~~~~~v~~t~~~ 235 (335)
|||+||+.++... .|.+.-. +..+...|+-++.|.|+|+.- +..+=..+--|||.-
T Consensus 147 YsGGGk~li~~y~sfh~~~a~~~--~~~~f~~YgL~L~HKHlpEm~-------------------~~sgL~~~PiFtP~V 205 (314)
T TIGR01851 147 YSGGGKALIAKYESFHEESADNS--KKQPFIIYGLALEHKHLPEMR-------------------VHSGLALPPIFTPAV 205 (314)
T ss_pred CCCHHHHHHHHHHHHHHHHCCCC--CCCCCCCCCCCCCCCCCHHHH-------------------HCCCCCCCCEEECCC
T ss_conf 44315899998864555412553--357873211112377453332-------------------036556888012565
Q ss_pred EEEEECCEEEEEEE---ECCCCCHHHHHHHHHHCCC----CEEEC--CCC---CCCCCCHHHHCCCCC--EEEEEEEECC
Q ss_conf 12110215798767---2465878999873100698----38810--268---899976154348973--2675277636
Q gi|254780307|r 236 VPVFIGHAESVNIE---FEKDISIKDAVAAINKSKG----CIVVD--KPD---KNEYITPVESIRRDL--VFVSRIRKDP 301 (335)
Q Consensus 236 vPv~rG~~~ti~i~---l~~~~~~~~i~~~~~~~~~----~~~~~--~~~---~~~~~~~~~~~g~~~--v~Vgrvr~~~ 301 (335)
--...|+.++|-++ |..+++.++|.+++.++|. +++.+ ++. ..+..-|..+.|||. ++|= ..
T Consensus 206 G~f~qGm~V~iPLHL~~L~~~vS~~~ih~al~~yY~Ge~Fv~Va~~~~~~~L~~G~~LD~~g~NgTN~~~lFVF----G~ 281 (314)
T TIGR01851 206 GNFAQGMLVTIPLHLATLDSKVSAADIHAALAEYYQGEQFVKVAPLDDAETLDDGTFLDPQGLNGTNRLELFVF----GS 281 (314)
T ss_pred CCCCCCCEEECCCCHHHHCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCHHHCCCCEECCCCCCCCCEEEEEEE----CC
T ss_conf 73006606763885576278989899999999971777438861244700001685116023788414778871----58
Q ss_pred CCCCEEEEEEEECCHHHHHHHHHHHHHHHHH
Q ss_conf 6888699999701302236799999999988
Q gi|254780307|r 302 TLKSGLNLWIVANNLRKGAALNAVQIAELVA 332 (335)
Q Consensus 302 ~~~~~~~~~~~~DNL~kGAAg~AVq~anlm~ 332 (335)
+......++.-.|||.|||||.||||||+|+
T Consensus 282 d~g~~a~l~ArLDNLGKGAsGAAVQnLn~~L 312 (314)
T TIGR01851 282 DDGERALLVARLDNLGKGASGAAVQNLNIML 312 (314)
T ss_pred CCCCCEEEEEEHHCCCCCHHHHHHHHHHHHH
T ss_conf 7733045242210256402579998767650
No 17
>TIGR01745 asd_gamma aspartate-semialdehyde dehydrogenase; InterPro: IPR011534 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see . Aspartate-semialdehyde dehydrogenase, the second enzyme in the aspartate pathway, converts aspartyl phosphate to aspartate-semialdehyde, the branch point intermediate between the lysine and threonine/methionine pathways. Based on sequence alignments, the aspartate-semialdehyde dehydrogenase family appears to have two distinct subgroups, one found in most bacteria (Gram-positve and Gram-negative), while the other is found primarily in organisms lacking peptidoglycan (archaea,fungi and some bacteria). Most studies have been performed on enzymes isolated from Gram-negative bacteria , , , . The N-terminal domain forms the active site and NADP-binding pocket, while C-terminal domain is primarily involved in hydrophobic intersubunit contacts. The catalytic mechanism involves the formation of a covalent thioester acyl-enzyme intermediate mediated through nucleophilic attack by an active site cysteine residue on the substrate aspartyl phosphate. Release of inorganic phosphate is followed by hydride transfer from NADPH to yield the product. The recently described archaeal structure suggests that the two subgroups of aspartate semi-aldehyde dehydrogenase share similar structures and have an identical catalytic mechanism, despite their relatively low sequence identity . Unlike the bacterial enzymes, the archaeal enzyme utilised both NAD and NADP as cofactor. This entry represents aspartate-semialdehyde dehydrogenase from a variety of bacterial species.; GO: 0004073 aspartate-semialdehyde dehydrogenase activity, 0050661 NADP binding, 0009089 lysine biosynthetic process via diaminopimelate.
Probab=100.00 E-value=0 Score=304.82 Aligned_cols=328 Identities=27% Similarity=0.375 Sum_probs=286.6
Q ss_pred EEEEEECCCCHHHHHHHHHH-HHCCCCEEEEEEEECCCCCCEEEECCCCEE-EEEECCHHH-HCCCCEEEECCCHHHHHH
Q ss_conf 17999816677899999999-744998078999974765875600278158-998779436-318847860687589999
Q gi|254780307|r 3 FKVAVVGATGNVGREMLNII-CERGFPISEVVALASERSAGTKVPFGKETI-DVQDVKSYD-FSDTDICLMSAGHAVSSQ 79 (335)
Q Consensus 3 ~kvaIiGatG~vG~el~~lL-~~~~~p~~~l~~~~s~~~~G~~i~~~~~~~-~~~~~~~~~-~~~~Divf~a~p~~~s~~ 79 (335)
++|+++||+|+||..|++++ ++++|..++.+++++++..++...+...+. .+++..+.+ ++.+|+++.|.+.+++.+
T Consensus 1 ~~vGl~GWrGmvGsvl~~rm~ee~df~~i~~vffsts~~G~~~P~~~~~~~~~l~~a~~~~~lk~~d~i~tCqGG~yt~e 80 (367)
T TIGR01745 1 KKVGLVGWRGMVGSVLLQRMQEEKDFDAIKPVFFSTSQLGQKAPSFAKTSANILEDAYDIDALKELDIIITCQGGDYTKE 80 (367)
T ss_pred CCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCEEEEECCCCCHHH
T ss_conf 91134532036899999986523334444454220133155465300001567765655787742576787158740356
Q ss_pred HHHHHCCCCE--EEEECCCCHHCCCCCCCCCCCHHHHHHCCCCCCC--EECCCCCCCCCCCCCCCHHHHCCCCCCEEEEE
Q ss_conf 9975045651--7996145100112111236410111110333431--21267643222111220011017874114652
Q gi|254780307|r 80 MSPKIAANGC--IVIDNSSAWRYDSDVPLIVPEVNPQTISLASRKN--IIANPNCSTIQLVVALKPLHDLAMIKRVVVTT 155 (335)
Q Consensus 80 ~~~~~~~~g~--~VIDlS~~~R~~~d~p~~lPein~~~i~~~~~~~--~VanPgC~at~~~l~L~PL~~~~~i~~v~v~s 155 (335)
+.|++.++|+ .+||.++.+|+++|..+++..+|.+.+++.-.++ -.-..||+.+-+++.+--|++...+++|.+.+
T Consensus 81 iyP~lr~~GW~GyWidaas~lrm~~d~~i~ldPvn~~~i~d~~~~G~~~f~GGnCt~s~~lm~~GGlf~~~lv~W~~~~t 160 (367)
T TIGR01745 81 IYPKLRKAGWKGYWIDAASSLRMKDDAVIILDPVNLDVIKDAVNKGIRTFVGGNCTVSLLLMSLGGLFRDELVEWVSVAT 160 (367)
T ss_pred HHHHHHHCCCCEEEEEHHHCCCCCCCCEEEECCHHHHHHHHHHHHCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 31788726677035300100000366169975200688998885022442161489899988631355766888888644
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHCCC-------------------------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 1522112321100000000000012-------------------------455444455101374042255323472000
Q gi|254780307|r 156 YQSVSGAGKKGIDELLAQTKAFLAK-------------------------KTIENRVFTKNIAFNVIPHIDVFMDGGSTK 210 (335)
Q Consensus 156 ~~g~SGaG~~~~~eL~~q~~~~~~~-------------------------~~~~~~~~~~~la~n~iP~i~~~~~~g~~~ 210 (335)
||++||+|.+.|.||..|+..+... ...+...|+.++|..++|||+..+++|+++
T Consensus 161 yqaasG~Ga~hm~ell~~mG~~~~~v~~~l~~~~~~il~i~~kv~~~~r~~~~P~~~f~~Pla~~liPWid~~l~nGqs~ 240 (367)
T TIGR01745 161 YQAASGGGARHMRELLKQMGVLYKEVEEELAKPSSAILEIERKVTKLIRSEELPVENFSVPLAGSLIPWIDKQLDNGQSR 240 (367)
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCHHHCCCCHHHHHHHHHHHHHCCCCCH
T ss_conf 32014420689999998631899988987521036766677677665420016600126651110001343231057630
Q ss_pred HHHHEEEEEEEEECC--CCCCCCCCEEEEEEECCEEEEEEEECCCCCHHHHHHHHHHCCCC---EEECCCCCCCCCCHHH
Q ss_conf 011011210001023--43221120011211021579876724658789998731006983---8810268899976154
Q gi|254780307|r 211 EEWKVLVETQKILDP--NIKVSCTAARVPVFIGHAESVNIEFEKDISIKDAVAAINKSKGC---IVVDKPDKNEYITPVE 285 (335)
Q Consensus 211 ee~k~~~E~~kil~~--~~~v~~t~~~vPv~rG~~~ti~i~l~~~~~~~~i~~~~~~~~~~---~~~~~~~~~~~~~~~~ 285 (335)
||||..+|++|||+. .+.++++|+|+...|+|+....++++++++.+++.+++++.+.+ .+.+........+|..
T Consensus 241 eeWkGqae~nkil~t~~~i~~dG~Cvr~G~lrChs~~~~~klk~d~~~~~~e~~~~~~n~W~~~~Pn~~~~t~~~ltP~~ 320 (367)
T TIGR01745 241 EEWKGQAETNKILGTKSTIPVDGLCVRIGALRCHSQALTIKLKKDVSLEEIEEIIRAHNPWVKVVPNEREITLRELTPAA 320 (367)
T ss_pred HHHCCHHHHHHHHCCCCEEEECCEEEEEECEEEEEEEEEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHCCCCC
T ss_conf 23133145665523343466454478750200000002344203577788999986469714425770466886337311
Q ss_pred HCCCCCEEEEEEEECCCCCCEEEEEEEECCHHHHHHHHHHHHHHH
Q ss_conf 348973267527763668886999997013022367999999999
Q gi|254780307|r 286 SIRRDLVFVSRIRKDPTLKSGLNLWIVANNLRKGAALNAVQIAEL 330 (335)
Q Consensus 286 ~~g~~~v~Vgrvr~~~~~~~~~~~~~~~DNL~kGAAg~AVq~anl 330 (335)
++|+..+.|||+|+....+..+..+++.|.|+||||---=..++.
T Consensus 321 ~tG~l~~~~Gr~rklnmG~~y~saf~~GdqllWGaaePlrrml~~ 365 (367)
T TIGR01745 321 VTGTLDIPVGRLRKLNMGPEYLSAFTVGDQLLWGAAEPLRRMLRI 365 (367)
T ss_pred EECCCCCCCCCEEECCCCHHHHHHHHHHHHHHHCCHHHHHHHHHH
T ss_conf 103200252200000035346544433224443020389999997
No 18
>pfam02774 Semialdhyde_dhC Semialdehyde dehydrogenase, dimerization domain. This Pfam entry contains the following members: N-acetyl-glutamine semialdehyde dehydrogenase (AgrC) Aspartate-semialdehyde dehydrogenase
Probab=100.00 E-value=1.3e-36 Score=241.27 Aligned_cols=162 Identities=46% Similarity=0.679 Sum_probs=140.7
Q ss_pred CCHHHHC-CCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--CCCHHHHE
Q ss_conf 2001101-78741146521522112321100000000000012455444455101374042255323472--00001101
Q gi|254780307|r 139 LKPLHDL-AMIKRVVVTTYQSVSGAGKKGIDELLAQTKAFLAKKTIENRVFTKNIAFNVIPHIDVFMDGG--STKEEWKV 215 (335)
Q Consensus 139 L~PL~~~-~~i~~v~v~s~~g~SGaG~~~~~eL~~q~~~~~~~~~~~~~~~~~~la~n~iP~i~~~~~~g--~~~ee~k~ 215 (335)
|+||+++ +++++|+|+||||+|||||+. ....|..++++|++||++.+...+ +..||++.
T Consensus 1 L~PL~~~~~~i~~Iiv~t~qgvSGAG~~~-----------------~~~~~~~~i~~N~~py~~~~~h~h~~Ei~eel~~ 63 (167)
T pfam02774 1 LKPLRDALGGLERVIVDTYQAVSGAGKKA-----------------KPGVFGAPIADNLIPYIDGEEHNGTPETREELKM 63 (167)
T ss_pred CCCHHHHHCCCCEEEEEECCCCCCCCCCC-----------------CCCCCCHHHHCCEEEECCCHHHCCCHHHHHHHHH
T ss_conf 92044644899799999211025067887-----------------8678653432888942574030483068888777
Q ss_pred EEEEEEEECCCCCCCCCCEEEEEEECCEEEEEEEEC-CCCCHHHHHHHHHHCCCCEEECCCCCCCCCCHHHHCC-CCCEE
Q ss_conf 121000102343221120011211021579876724-6587899987310069838810268899976154348-97326
Q gi|254780307|r 216 LVETQKILDPNIKVSCTAARVPVFIGHAESVNIEFE-KDISIKDAVAAINKSKGCIVVDKPDKNEYITPVESIR-RDLVF 293 (335)
Q Consensus 216 ~~E~~kil~~~~~v~~t~~~vPv~rG~~~ti~i~l~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~v~ 293 (335)
..|.+++++-...+++||||||++|||++++|++|+ ++.+.+++++.|++++...+.+.+ ..++|+|.++.| +|.|+
T Consensus 64 ~~e~~~~l~~~~~v~~T~~rVPv~rGh~~ti~v~~~~~~~~~~~~~~~~~~~~~~~v~v~~-~~~~P~~~~v~g~tn~v~ 142 (167)
T pfam02774 64 VNETKKILGFTPKVSATCVRVPVFRGHSETVTVKLKLKPIDVEEVYEAFYAAPGVFVVVRP-EEDYPTPRAVRGGTNFVY 142 (167)
T ss_pred HCCCCEEECCCCCCCCEEEECCEEEEEEEEEEEEECCCCHHHHHHHHHHHHCCCCEEEECC-CCCCCCCHHHHCCCCCEE
T ss_conf 4178367438986332589814084689999999548816599999999738998899899-878874499917988589
Q ss_pred EEEEEECCCCCCEEEEEEEECCHHH
Q ss_conf 7527763668886999997013022
Q gi|254780307|r 294 VSRIRKDPTLKSGLNLWIVANNLRK 318 (335)
Q Consensus 294 Vgrvr~~~~~~~~~~~~~~~DNL~k 318 (335)
|||+|.|...++++.+|+++|||+|
T Consensus 143 VGrir~d~~~~~~l~~~sviDNL~K 167 (167)
T pfam02774 143 VGRVRKDPDGDRGLKLVSVIDNLRK 167 (167)
T ss_pred EEEEEECCCCCCEEEEEEEECCCCC
T ss_conf 9998886899899999999725529
No 19
>pfam01118 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain. This Pfam entry contains the following members: N-acetyl-glutamine semialdehyde dehydrogenase (AgrC) Aspartate-semialdehyde dehydrogenase
Probab=99.97 E-value=2.8e-32 Score=215.07 Aligned_cols=113 Identities=49% Similarity=0.755 Sum_probs=103.4
Q ss_pred EEEEECCCCHHHHHHHHHHHHCCCCEEEEEEE-ECCCCCCEEEEC------CCCEEEEEECCHHHHCCCCEEEECCCHHH
Q ss_conf 79998166778999999997449980789999-747658756002------78158998779436318847860687589
Q gi|254780307|r 4 KVAVVGATGNVGREMLNIICERGFPISEVVAL-ASERSAGTKVPF------GKETIDVQDVKSYDFSDTDICLMSAGHAV 76 (335)
Q Consensus 4 kvaIiGatG~vG~el~~lL~~~~~p~~~l~~~-~s~~~~G~~i~~------~~~~~~~~~~~~~~~~~~Divf~a~p~~~ 76 (335)
||||+|||||+|+||+|+|.+ ||.+++..+ +|++++|+++.. +..++.+++++.+++.++|++|+|+||++
T Consensus 1 kvaIiGatGyvG~eLirlL~~--hp~~~i~~l~~s~~saG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvf~alp~~~ 78 (121)
T pfam01118 1 KVAIVGATGYVGQELLRLLAE--HPPLELVALVASSRSAGKKVAFAGPWLTGGVDLLLEDVDPEDLKDVDIVFFALPAGV 78 (121)
T ss_pred CEEEECCCHHHHHHHHHHHHC--CCCCCCEEEEEECCCCCCCHHHHCCCCCCCCCCEEEECCHHHHCCCCEEEECCCHHH
T ss_conf 999989361999999999971--887551378850565896014416542466664477589778538989998387689
Q ss_pred HHHHHHHHCCCCEEEEECCCCHHCCCCCCCCCCCHHHHHHCC
Q ss_conf 999997504565179961451001121112364101111103
Q gi|254780307|r 77 SSQMSPKIAANGCIVIDNSSAWRYDSDVPLIVPEVNPQTISL 118 (335)
Q Consensus 77 s~~~~~~~~~~g~~VIDlS~~~R~~~d~p~~lPein~~~i~~ 118 (335)
++++++++.++|++|||+|+|||++++|||++||+|+++++.
T Consensus 79 s~~~~~~~~~~g~~VIDlS~dfRl~~~~~y~lpEiN~~~i~~ 120 (121)
T pfam01118 79 SKELAPKLLEAGAVVIDLSSAFRMDDDVPYVLPEVNREAIKK 120 (121)
T ss_pred HHHHHHHHHHCCCEEEECCHHHCCCCCCCEECCCCCHHHHHC
T ss_conf 999999987159899878567517899857999869999844
No 20
>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain. The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.
Probab=99.97 E-value=2e-30 Score=203.80 Aligned_cols=112 Identities=46% Similarity=0.668 Sum_probs=94.7
Q ss_pred EEEEECCCCHHHHHHHHHHHHCCCCEEEEEEE-ECCCCCCEEEECCCCE-----EEEEECCHHHHCCCCEEEECCCHHHH
Q ss_conf 79998166778999999997449980789999-7476587560027815-----89987794363188478606875899
Q gi|254780307|r 4 KVAVVGATGNVGREMLNIICERGFPISEVVAL-ASERSAGTKVPFGKET-----IDVQDVKSYDFSDTDICLMSAGHAVS 77 (335)
Q Consensus 4 kvaIiGatG~vG~el~~lL~~~~~p~~~l~~~-~s~~~~G~~i~~~~~~-----~~~~~~~~~~~~~~Divf~a~p~~~s 77 (335)
||||+|||||||+||+++|.+| |++++..+ +|++++|+++.+.... ....+.+++++.++|++|+|+|+++|
T Consensus 1 kVaIvGatGyvG~eli~lL~~h--p~~~~~~l~as~~~~G~~i~~~~~~l~~~~~~~~~~~~~~~~~~Dvvf~a~p~~~s 78 (122)
T smart00859 1 KVAIVGATGYVGQELLRLLAEH--PDFEVVALAASARSAGKRVSEAGPHLKGEVVLELEPEDFEELAVDIVFLALPHGVS 78 (122)
T ss_pred CEEEECCCHHHHHHHHHHHHHC--CCCCEEEEEEECCCCCCCHHHHCCCCCCCCCCEECCCCCCCCCCCEEEECCCCHHH
T ss_conf 9899894519999999999858--99745777740465897578859664577350565331100179999993882788
Q ss_pred HHHHH---HHCCCCEEEEECCCCHHCCCCCCCCCCCHHHHHHC
Q ss_conf 99997---50456517996145100112111236410111110
Q gi|254780307|r 78 SQMSP---KIAANGCIVIDNSSAWRYDSDVPLIVPEVNPQTIS 117 (335)
Q Consensus 78 ~~~~~---~~~~~g~~VIDlS~~~R~~~d~p~~lPein~~~i~ 117 (335)
+++++ ++.++|++|||+|+|||++++|||++||+|+++++
T Consensus 79 ~~~~~~~~~~~~~g~~VIDlSadfRl~~~~~~~lPEvN~~~i~ 121 (122)
T smart00859 79 KEIAPLLPKAAEAGVKVIDLSSAFRMDDDVPYGLPEVNPEAIK 121 (122)
T ss_pred HHHHHHHHHHHHCCCEEEECCHHHCCCCCCCEECCCCCHHHHC
T ss_conf 9999988988756987986847752789986699871988954
No 21
>PRK08955 glyceraldehyde-3-phosphate dehydrogenase; Validated
Probab=99.93 E-value=6.6e-24 Score=164.25 Aligned_cols=296 Identities=20% Similarity=0.261 Sum_probs=198.7
Q ss_pred CCEEEEEECCCCHHHHHHHHHHHHCCCCEEEEEEEECCCC--------------CCE----------EEECCCCEEEEE-
Q ss_conf 9617999816677899999999744998078999974765--------------875----------600278158998-
Q gi|254780307|r 1 MTFKVAVVGATGNVGREMLNIICERGFPISEVVALASERS--------------AGT----------KVPFGKETIDVQ- 55 (335)
Q Consensus 1 M~~kvaIiGatG~vG~el~~lL~~~~~p~~~l~~~~s~~~--------------~G~----------~i~~~~~~~~~~- 55 (335)
|+|||||.|. |.+|+-++|.+.++ |.++++.+-.... -|+ .+-++++.+.+.
T Consensus 1 MtirIgINGF-GRIGR~v~R~~~~~--~~ievVaIND~~~d~~~~ayLLkyDS~hG~~~~~v~~~~~~l~i~g~~I~~~~ 77 (333)
T PRK08955 1 MTIKVGINGF-GRIGRLALRAAWDW--PEVEFVQINDPAGDAATLAHLLEFDSVHGRWHHEVTAEGDDIVINGKRIRTTQ 77 (333)
T ss_pred CCEEEEEECC-CHHHHHHHHHHHHC--CCEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCEEEECCEEEECCEEEEEEC
T ss_conf 9679999578-87899999998528--99089999179999899999860126789899868980996999999987741
Q ss_pred --ECCHHHHCCCCEEEECCCHHHHHHHHHHHCCCCEEEEECCCCHHCCCCCCCCCCCHHHHHHCCCCCCCEECCCCCCCC
Q ss_conf --779436318847860687589999997504565179961451001121112364101111103334312126764322
Q gi|254780307|r 56 --DVKSYDFSDTDICLMSAGHAVSSQMSPKIAANGCIVIDNSSAWRYDSDVPLIVPEVNPQTISLASRKNIIANPNCSTI 133 (335)
Q Consensus 56 --~~~~~~~~~~Divf~a~p~~~s~~~~~~~~~~g~~VIDlS~~~R~~~d~p~~lPein~~~i~~~~~~~~VanPgC~at 133 (335)
+.++.+|.++|+|+-|+|...+++-+..+.++|++=|=+|+... +++.+..+.++|.+.+.... .++|||..|+++
T Consensus 78 ~~~p~~i~W~~vDiViEcTG~f~t~~~a~~Hl~~GakkViiSaP~k-~~~~~tiV~GVN~~~~~~~~-~~iiS~aSCTTN 155 (333)
T PRK08955 78 NKAIADTDWSGCDVVIEASGVMKTKALLQAYLDQGVKRVVVTAPVK-EEGVLNIVMGVNDHLYDPAI-HPIVTAASCTTN 155 (333)
T ss_pred CCCCCCCCCCCCCEEEECCCCCCCHHHHHHHHHCCCCEEEECCCCC-CCCCEEEEEECCHHHCCCCC-CCEEECCCHHHH
T ss_conf 4880127866676899916766888999999875985799657998-77740489960322147654-757874641421
Q ss_pred CCCCCCCHHHHCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHH
Q ss_conf 21112200110178741146521522112321100000000000012455444455101374042255323472000011
Q gi|254780307|r 134 QLVVALKPLHDLAMIKRVVVTTYQSVSGAGKKGIDELLAQTKAFLAKKTIENRVFTKNIAFNVIPHIDVFMDGGSTKEEW 213 (335)
Q Consensus 134 ~~~l~L~PL~~~~~i~~v~v~s~~g~SGaG~~~~~eL~~q~~~~~~~~~~~~~~~~~~la~n~iP~i~~~~~~g~~~ee~ 213 (335)
|+++.++.|.++|+|++..+||.++++.-- .++.. +..+-..++.-+.|+||. .+|.++.-.
T Consensus 156 clAP~~kvl~~~fgI~~g~mTTiHa~T~~Q------------~l~D~-~h~d~Rr~Raa~~nIIPt-----tTgAakai~ 217 (333)
T PRK08955 156 CLAPVVKVIHEKLGIKHGSMTTIHDLTNTQ------------TILDA-PHKDLRRARACGMSLIPT-----TTGSATAIT 217 (333)
T ss_pred HHHHHHHHHHHHCCEEEEEEEEEECCCCCC------------CCCCC-CCCCCCCCCCCCCCCCCC-----CCCHHHHHH
T ss_conf 347699988863584167787550366886------------24777-888633474220457877-----663889998
Q ss_pred HEEEEEEEEECCCCCCCCCCEEEEEEECCEEEEEEEECCCCCHHHHHHHHHHC-----CCCE-EECCCCCCCCCCHHHHC
Q ss_conf 01121000102343221120011211021579876724658789998731006-----9838-81026889997615434
Q gi|254780307|r 214 KVLVETQKILDPNIKVSCTAARVPVFIGHAESVNIEFEKDISIKDAVAAINKS-----KGCI-VVDKPDKNEYITPVESI 287 (335)
Q Consensus 214 k~~~E~~kil~~~~~v~~t~~~vPv~rG~~~ti~i~l~~~~~~~~i~~~~~~~-----~~~~-~~~~~~~~~~~~~~~~~ 287 (335)
++.-|+. -++++.++|||+..|-+..+++.++++++.||+.++++++ +++. +.++|-. . .+..
T Consensus 218 ~vlP~L~------GKl~g~a~RVPt~~vS~vDlt~~l~k~~t~eein~~~~~aa~~~lkgil~~~~~p~V----S-~D~~ 286 (333)
T PRK08955 218 EIFPELK------GKLNGHAVRVPLANASLTDCVFEVERDTTEEEVNALLKEAAEGELKGILGYEERPLV----S-IDYK 286 (333)
T ss_pred HHCCCCC------CCEEEEEEECCCCCCEEEEEEEEECCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCH----H-HHHC
T ss_conf 6442138------963479995378776179999997587779999999999973876887988789611----1-2008
Q ss_pred CCCCEEE--EEEEECCCCCCEEEEEEEECCHHHHHHHHHHHHHHHHH
Q ss_conf 8973267--52776366888699999701302236799999999988
Q gi|254780307|r 288 RRDLVFV--SRIRKDPTLKSGLNLWIVANNLRKGAALNAVQIAELVA 332 (335)
Q Consensus 288 g~~~v~V--grvr~~~~~~~~~~~~~~~DNL~kGAAg~AVq~anlm~ 332 (335)
|...-.| ++.. -...++-+++.+=-||= ||=|-+-+-.++.|-
T Consensus 287 g~~~S~i~D~~~t-~~~~~~~vKv~~WYDNE-wGYs~Rl~dl~~~vg 331 (333)
T PRK08955 287 TDPRSSIVDALST-MVVNGTQVKLYAWYDNE-WGYANRTAELARKVG 331 (333)
T ss_pred CCCCHHEEEHHHC-EEECCCEEEEEEEECCH-HHHHHHHHHHHHHHH
T ss_conf 9993214883008-89679899999999966-899999999999972
No 22
>PTZ00023 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=99.93 E-value=1.8e-23 Score=161.69 Aligned_cols=297 Identities=20% Similarity=0.221 Sum_probs=200.5
Q ss_pred CCEEEEEECCCCHHHHHHHHHHHHCCCCEEEEEEEECC-CC-------------CCE----------EEECCCCEEEEE-
Q ss_conf 96179998166778999999997449980789999747-65-------------875----------600278158998-
Q gi|254780307|r 1 MTFKVAVVGATGNVGREMLNIICERGFPISEVVALASE-RS-------------AGT----------KVPFGKETIDVQ- 55 (335)
Q Consensus 1 M~~kvaIiGatG~vG~el~~lL~~~~~p~~~l~~~~s~-~~-------------~G~----------~i~~~~~~~~~~- 55 (335)
|+|||||.|. |.+|+-++|.+.++ +.++++++-.. .. -|+ .+-++++.+.+.
T Consensus 1 M~ikigINGF-GRIGR~v~R~~~~~--~~i~vvaINd~~~~~~~~ayLlkyDS~hG~~~~~v~~~~~~l~i~~~~I~~~~ 77 (337)
T PTZ00023 1 MVVKIGINGF-GRIGRLVHRASLAR--ENVEVVAINDPFMTPDYIKYLLKYDSVHGSLPCEVSVTSDHLMIGSKKVHLFF 77 (337)
T ss_pred CCEEEEEECC-CHHHHHHHHHHHCC--CCCEEEEECCCCCCHHHHHHHHCCCCCCCCCCCCEEEECCEEEECCEEEEEEC
T ss_conf 9679999568-77899999998418--99489997899999999999865367899899978983895999997887505
Q ss_pred --ECCHHHH--CCCCEEEECCCHHHHHHHHHHHCCCCEEEEECCCCHHCCCCCCCCCCCHHHHHHCCCCCCCEECCCCCC
Q ss_conf --7794363--188478606875899999975045651799614510011211123641011111033343121267643
Q gi|254780307|r 56 --DVKSYDF--SDTDICLMSAGHAVSSQMSPKIAANGCIVIDNSSAWRYDSDVPLIVPEVNPQTISLASRKNIIANPNCS 131 (335)
Q Consensus 56 --~~~~~~~--~~~Divf~a~p~~~s~~~~~~~~~~g~~VIDlS~~~R~~~d~p~~lPein~~~i~~~~~~~~VanPgC~ 131 (335)
+..+.+| .++|+|+-|+|...+++-+....++|++=|=+|+.- .++.+..++++|.+.++. ..++|||..|+
T Consensus 78 ~~dp~~ipW~~~gvDiViEcTG~f~~~~~a~~Hl~~GakkViiSAP~--~d~~~t~V~GVN~~~~~~--~~~IISnASCT 153 (337)
T PTZ00023 78 EKDPSQIPWGKNDVDVVAECTGVFTSTEKAKLHLKGGAKLVIISAPP--SDSTPIYVFGVNHTQYDK--SQRIVSNASCT 153 (337)
T ss_pred CCCHHHCCCCCCCCCEEEECCCCCCCHHHHHHHHHCCCCEEEECCCC--CCCCCEEEEECCHHHCCC--CCCEEECCCCC
T ss_conf 69966699220398789962654468899999987699779976899--888867998356343487--67289656310
Q ss_pred CCCCCCCCCHHHHCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHCCCCC--CCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 222111220011017874114652152211232110000000000001245--544445510137404225532347200
Q gi|254780307|r 132 TIQLVVALKPLHDLAMIKRVVVTTYQSVSGAGKKGIDELLAQTKAFLAKKT--IENRVFTKNIAFNVIPHIDVFMDGGST 209 (335)
Q Consensus 132 at~~~l~L~PL~~~~~i~~v~v~s~~g~SGaG~~~~~eL~~q~~~~~~~~~--~~~~~~~~~la~n~iP~i~~~~~~g~~ 209 (335)
++|+++.++.|.++|+|++-.+||.+++++- +.++.... ..+-..++.-+.|+||. .+|..
T Consensus 154 TNclAPl~kvL~~~fgI~~g~mTTIHsyT~~------------Q~l~D~~h~~~kD~Rr~Raa~~nIIPt-----sTgAa 216 (337)
T PTZ00023 154 TNCLAPLAKVINDNFGIVEGLMTTVHAVTAN------------QLTVDGASRGGKDWRAGRCAGVNIIPA-----STGAA 216 (337)
T ss_pred CCCHHHHHHHHHHHCCEEEEEEEEECCCCCC------------CCCCCCCCCCCCCCCCCCHHHHCCCCC-----CCCHH
T ss_conf 0300307987865348678789986346688------------730457786777545664254178866-----56388
Q ss_pred CHHHHEEEEEEEEECCCCCCCCCCEEEEEEECCEEEEEEEECCCCCHHHHHHHHHHC-----CCCE-EECCCCCCCCCCH
Q ss_conf 001101121000102343221120011211021579876724658789998731006-----9838-8102688999761
Q gi|254780307|r 210 KEEWKVLVETQKILDPNIKVSCTAARVPVFIGHAESVNIEFEKDISIKDAVAAINKS-----KGCI-VVDKPDKNEYITP 283 (335)
Q Consensus 210 ~ee~k~~~E~~kil~~~~~v~~t~~~vPv~rG~~~ti~i~l~~~~~~~~i~~~~~~~-----~~~~-~~~~~~~~~~~~~ 283 (335)
+.-.++.-|+. -++++.++|||+..|-+..++++++++++.+++.++++++ +++. +.++|-. .
T Consensus 217 kAi~~VlPeL~------GKl~g~A~RVPt~~vS~vDlt~~l~k~~s~eein~~~~~aa~~~lkgil~y~~~plV----S- 285 (337)
T PTZ00023 217 KAVGKVIPELN------GKLTGMAFRVPVSDVSVVDLTCRLAKPAKYEEIVLAVKAAAEGPLKGILGYTEDEVV----S- 285 (337)
T ss_pred HHHHHHHHHHC------CCCCEEEEECCCCCCEEEEEEEEECCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCC----C-
T ss_conf 99985405307------973036894378774589999996476428999999999852656886878888601----2-
Q ss_pred HHHCCCCCEE-EE-EEEECCCCCCEEEEEEEECCHHHHHHHHHHHHHHHHHHH
Q ss_conf 5434897326-75-277636688869999970130223679999999998853
Q gi|254780307|r 284 VESIRRDLVF-VS-RIRKDPTLKSGLNLWIVANNLRKGAALNAVQIAELVAQE 334 (335)
Q Consensus 284 ~~~~g~~~v~-Vg-rvr~~~~~~~~~~~~~~~DNL~kGAAg~AVq~anlm~~~ 334 (335)
.+..|...-. +. +.. -...++-++++.=-||= ||=|-+-+-.+..|.++
T Consensus 286 ~Df~g~~~S~i~D~~~t-~~~~~~~vKv~~WYDNE-wGYs~R~~dla~~i~~k 336 (337)
T PTZ00023 286 SDFVHDKRSSIFDVKAG-IALNDTFVKLVSWYDNE-WGYSNRLLDLAVYIFQK 336 (337)
T ss_pred CCCCCCCCCCEEECCCC-EEECCCEEEEEEEECCH-HHHHHHHHHHHHHHHHC
T ss_conf 21089994115882347-99879989999998866-99999999999999840
No 23
>PRK07729 glyceraldehyde-3-phosphate dehydrogenase; Validated
Probab=99.92 E-value=5.7e-23 Score=158.58 Aligned_cols=297 Identities=20% Similarity=0.261 Sum_probs=196.8
Q ss_pred CCEEEEEECCCCHHHHHHHHHHHHCCCCEEEEEEEECCCC-------------CCE----------EEECCCCEEEEE--
Q ss_conf 9617999816677899999999744998078999974765-------------875----------600278158998--
Q gi|254780307|r 1 MTFKVAVVGATGNVGREMLNIICERGFPISEVVALASERS-------------AGT----------KVPFGKETIDVQ-- 55 (335)
Q Consensus 1 M~~kvaIiGatG~vG~el~~lL~~~~~p~~~l~~~~s~~~-------------~G~----------~i~~~~~~~~~~-- 55 (335)
|+|||||.|. |.+|+-++|.+.++ +.++++++-.... -|+ .+-.+++.+.+.
T Consensus 1 M~irIgINGF-GRIGR~v~R~~~~~--~~i~vvaINd~~~~~~~ayLlkyDS~hG~~~~~v~~~~~~l~v~g~~I~~~~~ 77 (343)
T PRK07729 1 MKVRVAINGF-GRIGRMVFRQAIKE--SAFEIVAINASYPSETLAHLIKYDTVHGKFDGTVEAFEDHLLVNGKKIRLLNN 77 (343)
T ss_pred CCEEEEEECC-CHHHHHHHHHHHHC--CCCEEEEECCCCCHHHHHHHHCCCCCCCCCCCCEEECCCEEEECCEEECCCCC
T ss_conf 9679999788-86899999999668--99889998489998999997585277898899789719979999975012366
Q ss_pred -ECCHHHHC--CCCEEEECCCHHHHHHHHHHHCCCCEEEEECCCCHHCCCCCCCCCCCHHHHHHCCCCCCCEECCCCCCC
Q ss_conf -77943631--884786068758999999750456517996145100112111236410111110333431212676432
Q gi|254780307|r 56 -DVKSYDFS--DTDICLMSAGHAVSSQMSPKIAANGCIVIDNSSAWRYDSDVPLIVPEVNPQTISLASRKNIIANPNCST 132 (335)
Q Consensus 56 -~~~~~~~~--~~Divf~a~p~~~s~~~~~~~~~~g~~VIDlS~~~R~~~d~p~~lPein~~~i~~~~~~~~VanPgC~a 132 (335)
+..+.+|. ++|+|+-|+|...+++-+....++|++=|=+|+.. -++|. -++.++|.+.++.. ..++|||..|++
T Consensus 78 ~dp~~i~W~~~gvD~ViE~TG~f~~~e~a~~Hl~~GakkViiSAP~-k~~d~-tiV~GVN~~~~~~~-~~~IiSnASCTT 154 (343)
T PRK07729 78 RDPKELPWTDLGIDIVIEATGKFNSKEKAILHVEAGAKKVILTAPG-KNEDV-TIVVGVNEDQLDIE-KHTVISNASCTT 154 (343)
T ss_pred CCHHHCCCCCCCCCEEEECCCCCCCHHHHHHHHHCCCCEEEECCCC-CCCCC-EEEEECCHHHCCCC-CCCEEECCCHHH
T ss_conf 9967788410388499974755678899998885498679988898-99974-59972355545765-483897384798
Q ss_pred CCCCCCCCHHHHCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHH
Q ss_conf 22111220011017874114652152211232110000000000001245544445510137404225532347200001
Q gi|254780307|r 133 IQLVVALKPLHDLAMIKRVVVTTYQSVSGAGKKGIDELLAQTKAFLAKKTIENRVFTKNIAFNVIPHIDVFMDGGSTKEE 212 (335)
Q Consensus 133 t~~~l~L~PL~~~~~i~~v~v~s~~g~SGaG~~~~~eL~~q~~~~~~~~~~~~~~~~~~la~n~iP~i~~~~~~g~~~ee 212 (335)
+|+++.++.|.++|+|++..+||..++.+--+ ++.. +..+-..++.-+.|+||. .+|..+.-
T Consensus 155 NclAPv~kvL~~~fGI~~g~mTTIHa~T~dQ~------------l~D~-~hkD~Rr~Raa~~nIIPt-----sTGAAkAi 216 (343)
T PRK07729 155 NCLAPVVKVLDEQFGIENGLMTTVHAYTNDQK------------NIDN-PHKDLRRARACGQSIIPT-----TTGAAKAL 216 (343)
T ss_pred HHHHHHHHHHHHHCCCEEEEEEEEECCCCCCC------------CCCC-CCCCCCCCCCCCCCCCCC-----CCCHHHHH
T ss_conf 88999999998653801899998861579850------------3678-877545563202127856-----45388999
Q ss_pred HHEEEEEEEEECCCCCCCCCCEEEEEEECCEEEEEEEECCCCCHHHHHHHHHHC-----CCCE-EECCCCCCCCCCHHHH
Q ss_conf 101121000102343221120011211021579876724658789998731006-----9838-8102688999761543
Q gi|254780307|r 213 WKVLVETQKILDPNIKVSCTAARVPVFIGHAESVNIEFEKDISIKDAVAAINKS-----KGCI-VVDKPDKNEYITPVES 286 (335)
Q Consensus 213 ~k~~~E~~kil~~~~~v~~t~~~vPv~rG~~~ti~i~l~~~~~~~~i~~~~~~~-----~~~~-~~~~~~~~~~~~~~~~ 286 (335)
.++.-|+. -++++.++|||+..|-+..+++.++++++.|+|.++|+++ +++. +.++|-. . .+.
T Consensus 217 ~~VlPeL~------GKl~G~A~RVPt~~vS~vDlt~~l~k~~t~eeIn~~~k~aa~~~l~gil~y~~~plV----S-~D~ 285 (343)
T PRK07729 217 AKVLPHLN------GKLHGMALRVPTPNVSLVDLVVDVKRDVTVEAINEAFKTAANGALKGILEFSEEPLV----S-IDF 285 (343)
T ss_pred HHHHHHHC------CCCCEEEEECCCCCCEEEEEEEEECCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCH----H-HCC
T ss_conf 86434207------872126870577776079999996787879999999999862788886776888531----1-200
Q ss_pred CCCC-CEEE-EEEEECCCCCCEEEEEEEECCHHHHHHHHHHHHHHHHHHH
Q ss_conf 4897-3267-5277636688869999970130223679999999998853
Q gi|254780307|r 287 IRRD-LVFV-SRIRKDPTLKSGLNLWIVANNLRKGAALNAVQIAELVAQE 334 (335)
Q Consensus 287 ~g~~-~v~V-grvr~~~~~~~~~~~~~~~DNL~kGAAg~AVq~anlm~~~ 334 (335)
.|.. .+-+ ++.. ....++-+++++=-||= ||=|-.-+-.+.+|.++
T Consensus 286 ~g~~~Ssi~D~~~t-~v~~~~~vKv~~WYDNE-wGYs~R~~dl~~~i~~~ 333 (343)
T PRK07729 286 NTNTHSAIIDGLST-MVMGDRKVKVLAWYDNE-WGYSCRVVDLVTLVAAE 333 (343)
T ss_pred CCCCCHHEEEHHHC-EEECCCEEEEEEEECCH-HHHHHHHHHHHHHHHHH
T ss_conf 89992232754008-89789889999998865-99999999999999997
No 24
>PRK07403 glyceraldehyde-3-phosphate dehydrogenase; Reviewed
Probab=99.91 E-value=3.6e-22 Score=153.77 Aligned_cols=298 Identities=22% Similarity=0.242 Sum_probs=200.6
Q ss_pred EEEEEECCCCHHHHHHHHHHHHCCCCEEEEEEEECCCC-------------CCE----------EEECCCCEEEEE---E
Q ss_conf 17999816677899999999744998078999974765-------------875----------600278158998---7
Q gi|254780307|r 3 FKVAVVGATGNVGREMLNIICERGFPISEVVALASERS-------------AGT----------KVPFGKETIDVQ---D 56 (335)
Q Consensus 3 ~kvaIiGatG~vG~el~~lL~~~~~p~~~l~~~~s~~~-------------~G~----------~i~~~~~~~~~~---~ 56 (335)
|||||.|. |.+|+-++|.+.+++.+.++++.+-.... -|+ .+-.+++.+.+. +
T Consensus 2 ikIgINGF-GRIGR~vlR~~~~~~~~~ieiVaINd~~d~~~~ayLlkyDS~hG~~~~~v~~~~~~l~v~g~~I~~~~~~~ 80 (337)
T PRK07403 2 IRVAINGF-GRIGRNFLRCWLGRENSQLELVAINDTSDPRTNAHLLKYDSMLGKLNADISADENSITVNGKTIKCVSDRN 80 (337)
T ss_pred EEEEEECC-CHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHCCCCCCCCCCCCEEECCCEEEECCEEEEEEECCC
T ss_conf 09999688-87899999999856699869999847998899999867147899989858971998999998878880599
Q ss_pred CCHHHHC--CCCEEEECCCHHHHHHHHHHHCCCCEEEEECCCCHHCCCCCCCCCCCHHHHHHCCCCCCCEECCCCCCCCC
Q ss_conf 7943631--88478606875899999975045651799614510011211123641011111033343121267643222
Q gi|254780307|r 57 VKSYDFS--DTDICLMSAGHAVSSQMSPKIAANGCIVIDNSSAWRYDSDVPLIVPEVNPQTISLASRKNIIANPNCSTIQ 134 (335)
Q Consensus 57 ~~~~~~~--~~Divf~a~p~~~s~~~~~~~~~~g~~VIDlS~~~R~~~d~p~~lPein~~~i~~~~~~~~VanPgC~at~ 134 (335)
.++.+|. ++|+|+-|+|...+++-+....++|++=|=.|+. -.++|.|.++.++|.+.++.. +.++|||..|+++|
T Consensus 81 p~~i~W~~~gvDiViEcTG~f~~~~~a~~Hl~~GakkViiSAP-~k~~d~~tiV~GVN~~~~~~~-~h~IIS~aSCTTNc 158 (337)
T PRK07403 81 PLNLPWAEWGIDLIIESTGVFVTKEGASKHIQAGAKKVLITAP-GKGEGIGTYVVGVNHHEYDHE-DYNIISNASCTTNC 158 (337)
T ss_pred HHHCCHHHCCCCEEEECCCCCCCHHHHHHHHHCCCCEEEECCC-CCCCCCCEEEEECCHHHCCCC-CCEEEECCCHHHHH
T ss_conf 6669801309989998986548778899987569867998069-988876669984263553754-44189736258766
Q ss_pred CCCCCCHHHHCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHH
Q ss_conf 11122001101787411465215221123211000000000000124554444551013740422553234720000110
Q gi|254780307|r 135 LVVALKPLHDLAMIKRVVVTTYQSVSGAGKKGIDELLAQTKAFLAKKTIENRVFTKNIAFNVIPHIDVFMDGGSTKEEWK 214 (335)
Q Consensus 135 ~~l~L~PL~~~~~i~~v~v~s~~g~SGaG~~~~~eL~~q~~~~~~~~~~~~~~~~~~la~n~iP~i~~~~~~g~~~ee~k 214 (335)
+++.++.|.++|+|++..+||.+++...-+ ++.. +..+-..++.-+.|+||. .+|..+.-.+
T Consensus 159 lAPv~kvL~~~fgI~~g~mTTIHa~T~~Q~------------l~D~-~~~D~Rr~Raa~~nIIPt-----sTgAakAi~~ 220 (337)
T PRK07403 159 LAPIAKVIHDNFGIIKGTMTTTHSYTGDQR------------ILDA-SHRDLRRARAAAVNIVPT-----STGAAKAVAL 220 (337)
T ss_pred HHHHHHHHHHHCCEEEEEEEEECCCCCCCC------------CCCC-CCCCCCCCCCHHHCCCCC-----CCCHHHHHHH
T ss_conf 888999887515875999988734778875------------2567-778645666365478866-----5537888987
Q ss_pred EEEEEEEEECCCCCCCCCCEEEEEEECCEEEEEEEECCCCCHHHHHHHHHHCC-----CCE-EECCCCCCCCCCHHHHCC
Q ss_conf 11210001023432211200112110215798767246587899987310069-----838-810268899976154348
Q gi|254780307|r 215 VLVETQKILDPNIKVSCTAARVPVFIGHAESVNIEFEKDISIKDAVAAINKSK-----GCI-VVDKPDKNEYITPVESIR 288 (335)
Q Consensus 215 ~~~E~~kil~~~~~v~~t~~~vPv~rG~~~ti~i~l~~~~~~~~i~~~~~~~~-----~~~-~~~~~~~~~~~~~~~~~g 288 (335)
+.-|+. -++++.++|||+..|-+..++++++++++.++|.++|+++. ++. +.++|-. . .+..|
T Consensus 221 vlP~L~------Gkl~g~a~RVPt~~vS~vDlt~~l~k~~t~eein~~~~~aa~~~l~gil~~~~~plV----S-~Df~g 289 (337)
T PRK07403 221 VIPELK------GKLNGIALRVPTPNVSVVDLVVQVEKPTITEQVNEVLKDAAEGPLKGILEYSDLPLV----S-SDYRG 289 (337)
T ss_pred HHHHCC------CCEEEEEEECCCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCC----C-CCCCC
T ss_conf 645028------976468884277774279999973887749999999999865764786545788601----5-21089
Q ss_pred CCCEEE--EEEEECCCCCCEEEEEEEECCHHHHHHHHHHHHHHHHHHH
Q ss_conf 973267--5277636688869999970130223679999999998853
Q gi|254780307|r 289 RDLVFV--SRIRKDPTLKSGLNLWIVANNLRKGAALNAVQIAELVAQE 334 (335)
Q Consensus 289 ~~~v~V--grvr~~~~~~~~~~~~~~~DNL~kGAAg~AVq~anlm~~~ 334 (335)
...-.| +... -...++-+++++=-||= ||=|-+-+-.+++|.++
T Consensus 290 ~~~S~i~D~~~t-~v~~~~~vKv~~WYDNE-wGYs~R~~dl~~~i~~k 335 (337)
T PRK07403 290 TDASSIVDASLT-MVMGGDMVKVIAWYDNE-WGYSQRVVDLAELVARK 335 (337)
T ss_pred CCCHHHEECCCC-EEECCCEEEEEEEECCH-HHHHHHHHHHHHHHHHH
T ss_conf 981273744027-89789889999998971-89999999999999864
No 25
>PRK13535 erythrose 4-phosphate dehydrogenase; Provisional
Probab=99.90 E-value=1.4e-21 Score=150.10 Aligned_cols=296 Identities=19% Similarity=0.231 Sum_probs=196.5
Q ss_pred CEEEEEECCCCHHHHHHHHHHHHC-CCCEEEEEEEECCC-------------CCCE----------EEECCCCEEEEE--
Q ss_conf 617999816677899999999744-99807899997476-------------5875----------600278158998--
Q gi|254780307|r 2 TFKVAVVGATGNVGREMLNIICER-GFPISEVVALASER-------------SAGT----------KVPFGKETIDVQ-- 55 (335)
Q Consensus 2 ~~kvaIiGatG~vG~el~~lL~~~-~~p~~~l~~~~s~~-------------~~G~----------~i~~~~~~~~~~-- 55 (335)
+|||||.|. |.+|+-++|.+.++ ..+.++++++-... .-|+ .+-++++.+.+.
T Consensus 1 tikIgINGF-GRIGR~v~R~~~e~~~~~~i~vVaINd~~~~~~~ayLLkyDSvhG~~~~~v~~~~~~l~v~~~~I~~~~~ 79 (336)
T PRK13535 1 TIRVAINGF-GRIGRNVLRALYESGRRAEITVVAINELADAEGMAHLLKYDTSHGRFAWEVRQERDQLFVGDDAIRLLHE 79 (336)
T ss_pred CEEEEEECC-CHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHCCCCCCCCCCCCEEEECCEEEECCEEEEEEEC
T ss_conf 969999788-8899999999986688998699997889998999998642267888999789708979999989999955
Q ss_pred -ECCHHHHC--CCCEEEECCCHHHHHHHHHHHCCCCEE--EEECCCCHHCCCCCCCCCCCHHHHHHCCCCCCCEECCCCC
Q ss_conf -77943631--884786068758999999750456517--9961451001121112364101111103334312126764
Q gi|254780307|r 56 -DVKSYDFS--DTDICLMSAGHAVSSQMSPKIAANGCI--VIDNSSAWRYDSDVPLIVPEVNPQTISLASRKNIIANPNC 130 (335)
Q Consensus 56 -~~~~~~~~--~~Divf~a~p~~~s~~~~~~~~~~g~~--VIDlS~~~R~~~d~p~~lPein~~~i~~~~~~~~VanPgC 130 (335)
+.++.+|. ++|+|+-|++...+++-+....++|++ +|...+. ++.-+.++.++|.+.++. +.++|||..|
T Consensus 80 ~dp~~ipW~~~~vD~ViE~TG~f~~~~~a~~Hl~~GakkViiSaP~~---~~~d~tiV~GVN~~~~~~--~~~IiSnASC 154 (336)
T PRK13535 80 RDLASLPWRELGVDVVLDCTGVYGSREDGEAHIAAGAKKVLFSHPGS---NDLDATVVYGVNHDQLRA--EHRIVSNASC 154 (336)
T ss_pred CCHHHCCCCCCCCCEEEEECCCCCCHHHHHHHHHCCCCEEEEECCCC---CCCCCEEEECCCHHHCCC--CCEEEECCCC
T ss_conf 89433983115875999704311678999999875985689825887---666863896157567486--6538975753
Q ss_pred CCCCCCCCCCHHHHCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 32221112200110178741146521522112321100000000000012455444455101374042255323472000
Q gi|254780307|r 131 STIQLVVALKPLHDLAMIKRVVVTTYQSVSGAGKKGIDELLAQTKAFLAKKTIENRVFTKNIAFNVIPHIDVFMDGGSTK 210 (335)
Q Consensus 131 ~at~~~l~L~PL~~~~~i~~v~v~s~~g~SGaG~~~~~eL~~q~~~~~~~~~~~~~~~~~~la~n~iP~i~~~~~~g~~~ 210 (335)
+++|+++.++-|.++|+|++-.+||.++++.-- .++... ..+-.-++.-+.|+||. .+|.++
T Consensus 155 TTNclAPv~kvl~~~fGI~~g~mTTIHa~T~~Q------------~l~D~~-h~d~Rr~Raa~~nIIPt-----sTgAak 216 (336)
T PRK13535 155 TTNCIIPVIKLLDDAFGIESGTVTTIHSAMNDQ------------QVIDAY-HPDLRRTRAASQSIIPV-----DTKLAA 216 (336)
T ss_pred CCCEEEEHHHHHHHCCCEEEEEEEEEECCCCCC------------CCCCCC-CCCCCCCCCHHHCCEEC-----CCHHHH
T ss_conf 324140125536633675775788772376877------------666677-88863444024375456-----621788
Q ss_pred HHHHEEEEEEEEECCCCCCCCCCEEEEEEECCEEEEEEEECCCCCHHHHHHHHHHCC-----CCE-EECCCCCCCCCCHH
Q ss_conf 011011210001023432211200112110215798767246587899987310069-----838-81026889997615
Q gi|254780307|r 211 EEWKVLVETQKILDPNIKVSCTAARVPVFIGHAESVNIEFEKDISIKDAVAAINKSK-----GCI-VVDKPDKNEYITPV 284 (335)
Q Consensus 211 ee~k~~~E~~kil~~~~~v~~t~~~vPv~rG~~~ti~i~l~~~~~~~~i~~~~~~~~-----~~~-~~~~~~~~~~~~~~ 284 (335)
.-.++.-|+. -++++.++|||+..|-+..++++++++++.|||.++++++. ++. +.++|- .. .
T Consensus 217 Ai~~VlP~L~------GKl~G~a~RVPt~~vS~vDlt~~l~k~~t~eein~~~k~aa~~~lkgil~y~~~~l----VS-~ 285 (336)
T PRK13535 217 GITRIFPQFN------DRFEAISVRVPTINVTAIDLSVTVKKPVKVNEVNQLLQKAAQGAFHGIVDYTELPL----VS-I 285 (336)
T ss_pred HHHHHCHHHC------CCEEEEEEECCCCCCEEEEEEEEECCCCCHHHHHHHHHHHHHCCCCCEEEEECCCE----EE-E
T ss_conf 8852165437------86437899767897158999999636654899999999985364478444387964----24-2
Q ss_pred HHCCCCCEEE--EEEEECCCCCCEEEEEEEECCHHHHHHHHHHHHHHHHHHH
Q ss_conf 4348973267--5277636688869999970130223679999999998853
Q gi|254780307|r 285 ESIRRDLVFV--SRIRKDPTLKSGLNLWIVANNLRKGAALNAVQIAELVAQE 334 (335)
Q Consensus 285 ~~~g~~~v~V--grvr~~~~~~~~~~~~~~~DNL~kGAAg~AVq~anlm~~~ 334 (335)
+-.|...-.| +... ....++-+++++=-||= ||=|-+-+-.+..|.+.
T Consensus 286 Df~~~~~SsI~D~~~t-~v~~~~~vKv~aWYDNE-wGYs~R~vdla~~ma~~ 335 (336)
T PRK13535 286 DFNHDPHSAIVDGTQT-RVSGAHLIKTLVWCDNE-WGFANRMLDTTLAMAAV 335 (336)
T ss_pred CCCCCCCCEEEEHHHC-EEECCCEEEEEEEECCH-HHHHHHHHHHHHHHHHC
T ss_conf 0499995007873045-99789889999998867-99999999999999736
No 26
>TIGR01534 GAPDH-I glyceraldehyde-3-phosphate dehydrogenase, type I; InterPro: IPR006424 This group of sequences represent glyceraldehyde-3-phosphate dehydrogenase (GAPDH), the enzyme responsible for the interconversion of 1,3-diphosphoglycerate and glyceraldehyde-3-phosphate, a central step in glycolysis and gluconeogenesis. Forms exist which utilise NAD (1.2.1.12 from EC), NADP (1.2.1.13 from EC) or either (1.2.1.59 from EC). In some species, NAD- and NADP- utilising forms exist, generally being responsible for reactions in the anabolic and catabolic directions respectively . An additional form of gap gene is found in gamma proteobacteria and is responsible for the conversion of erythrose-4-phosphate (E4P) to 4-phospho-erythronate in the biosynthesis of pyridoxine . This pathway of pyridoxine biosynthesis appears to be limited, however, to a relatively small number of bacterial species although it is prevalent among the gamma-proteobacteria . This enzyme is described by IPR006422 from INTERPRO. These two groups of sequences exhibit a close evolutionary relationship. There exists the possibility that some forms of GAPDH may be bifunctional and act on E4P in species which make pyridoxine and via hydroxythreonine and lack a separate E4PDH enzyme (for instance, the GAPDH from Bacillus stearothermophilus has been shown to possess a limited E4PD activity as well as a robust GAPDH activity ).; GO: 0008943 glyceraldehyde-3-phosphate dehydrogenase activity, 0051287 NAD binding, 0006006 glucose metabolic process.
Probab=99.87 E-value=2e-21 Score=149.17 Aligned_cols=239 Identities=25% Similarity=0.270 Sum_probs=179.6
Q ss_pred EEEEECCCCHHHHHHHHHHHHCCC--CEEEE-EEEECC-C-------------CCC-------EE---------------
Q ss_conf 799981667789999999974499--80789-999747-6-------------587-------56---------------
Q gi|254780307|r 4 KVAVVGATGNVGREMLNIICERGF--PISEV-VALASE-R-------------SAG-------TK--------------- 44 (335)
Q Consensus 4 kvaIiGatG~vG~el~~lL~~~~~--p~~~l-~~~~s~-~-------------~~G-------~~--------------- 44 (335)
||||-|. |.+|+-.+|++.+.+- +.+|+ +.+-+. . --| +-
T Consensus 1 kvgINGF-GRIGRlvlR~~~~~~~~g~~~~viv~inD~~~~~~~~ayLlkyDSvhG~~~y~~~~f~~~v~~~~~~~~~~~ 79 (366)
T TIGR01534 1 KVGINGF-GRIGRLVLRAILEKQGSGLDLEVIVAINDLSTDLEKLAYLLKYDSVHGRLAYLYFRFEGEVTVDEDKAEKTN 79 (366)
T ss_pred CEEEECC-CHHHHHHHHHHHCCCCCCCEEEEEEEECCCCCCHHHHHHHHHHCCCCCCCHHEECCCCCEEEEEECCCCCCC
T ss_conf 9365147-858999999985057889705899831488768899998864123558711031278852888303436741
Q ss_pred -EECCCC--EEEEE---ECCHHHH-C--CCCEEEECCCHHHHHHH--HHHHCCCC---EEEEECCCCHH-CCCCCCCCCC
Q ss_conf -002781--58998---7794363-1--88478606875899999--97504565---17996145100-1121112364
Q gi|254780307|r 45 -VPFGKE--TIDVQ---DVKSYDF-S--DTDICLMSAGHAVSSQM--SPKIAANG---CIVIDNSSAWR-YDSDVPLIVP 109 (335)
Q Consensus 45 -i~~~~~--~~~~~---~~~~~~~-~--~~Divf~a~p~~~s~~~--~~~~~~~g---~~VIDlS~~~R-~~~d~p~~lP 109 (335)
+-++++ .+.+. +.++.+| + ++|+|+-|+|--.+.+- ..+..++| ++-|=+|+.|. .++..|-.+.
T Consensus 80 ~l~v~g~~~~~~~~~~~~P~~lpWt~~~~vD~V~EcTG~f~~~~~~~l~~Hl~~G~~gAkKVlisAP~k~~~~~~~t~V~ 159 (366)
T TIGR01534 80 GLVVNGKVKVIVVASERDPSDLPWTKALGVDIVIECTGKFRDKEKAALEKHLEAGNPGAKKVLISAPFKSKGDAAPTIVY 159 (366)
T ss_pred EEEECCCEEEEEEEECCCHHHCCCHHHHCCEEEEECCCCCCCCCHHHHHHHHHCCCCCCCEEEEECCCCCCCCCEEEEEE
T ss_conf 68886804578874047853778712607328995887502762568989863679941268983688888896027886
Q ss_pred CHHHHHHCCCCCCCEECCCCCCCCCCCCCCCHHH---HCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHCCCCC-CCC
Q ss_conf 1011111033343121267643222111220011---017874114652152211232110000000000001245-544
Q gi|254780307|r 110 EVNPQTISLASRKNIIANPNCSTIQLVVALKPLH---DLAMIKRVVVTTYQSVSGAGKKGIDELLAQTKAFLAKKT-IEN 185 (335)
Q Consensus 110 ein~~~i~~~~~~~~VanPgC~at~~~l~L~PL~---~~~~i~~v~v~s~~g~SGaG~~~~~eL~~q~~~~~~~~~-~~~ 185 (335)
+||.+.+++..++++|||..|||+|+++.++.|. ++|+|.+-.+||.+++++- +.++.... ..+
T Consensus 160 GVN~~~y~~~~~~~iiSnASCTTNclAP~~kvL~~hfe~FGI~~G~MTTvHsyT~d------------Q~l~D~~~~~~D 227 (366)
T TIGR01534 160 GVNHDEYDDPAEERIISNASCTTNCLAPLAKVLDEHFEEFGIVSGLMTTVHSYTND------------QNLVDGPHRHKD 227 (366)
T ss_pred CCCHHHHCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEEEEEECCC------------CEEECCCCCCCC
T ss_conf 67745604788860898255513578999999987651043010169999865087------------104207768887
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCHHHHEEEEEEEEECCCCCCCCCCEEEEEEECCEEEEEEEECCCCCHHHHHHHHHH
Q ss_conf 44551013740422553234720000110112100010234322112001121102157987672465878999873100
Q gi|254780307|r 186 RVFTKNIAFNVIPHIDVFMDGGSTKEEWKVLVETQKILDPNIKVSCTAARVPVFIGHAESVNIEFEKDISIKDAVAAINK 265 (335)
Q Consensus 186 ~~~~~~la~n~iP~i~~~~~~g~~~ee~k~~~E~~kil~~~~~v~~t~~~vPv~rG~~~ti~i~l~~~~~~~~i~~~~~~ 265 (335)
..-+|.-+-|+|| .++|-++.--+++-|+. -+++++++|||+..|-+.-+.++++++++.++|.++|++
T Consensus 228 ~Rr~RAAa~NiIP-----tsTGAAkA~~~VlP~L~------GKL~G~A~RVPt~~vS~vdL~~~l~k~~~~~~vnaA~k~ 296 (366)
T TIGR01534 228 LRRARAAALNIIP-----TSTGAAKAIGKVLPELA------GKLTGMAIRVPTPNVSLVDLVVNLEKKVTKEEVNAALKE 296 (366)
T ss_pred CCCCCCCCCCCCH-----HHHHHHHHHHHHCCCCC------CCEEEEEEEEECCCCEEEEEEEECCCCCCHHHHHHHHHH
T ss_conf 5201300026630-----03468889987435777------640178997653895299999733787788999999999
Q ss_pred C
Q ss_conf 6
Q gi|254780307|r 266 S 266 (335)
Q Consensus 266 ~ 266 (335)
+
T Consensus 297 a 297 (366)
T TIGR01534 297 A 297 (366)
T ss_pred H
T ss_conf 8
No 27
>COG0057 GapA Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate transport and metabolism]
Probab=99.86 E-value=9.5e-20 Score=139.05 Aligned_cols=292 Identities=22% Similarity=0.243 Sum_probs=192.9
Q ss_pred CEEEEEECCCCHHHHHHHHHHHHCCCC-EEEEEEEECC------------CC-C----------CEEEECCCCEEEEEEC
Q ss_conf 617999816677899999999744998-0789999747------------65-8----------7560027815899877
Q gi|254780307|r 2 TFKVAVVGATGNVGREMLNIICERGFP-ISEVVALASE------------RS-A----------GTKVPFGKETIDVQDV 57 (335)
Q Consensus 2 ~~kvaIiGatG~vG~el~~lL~~~~~p-~~~l~~~~s~------------~~-~----------G~~i~~~~~~~~~~~~ 57 (335)
++||||.|. |.+|+..+|.+.++ + .+|++.+-.- .+ - +..+.++++.+.+...
T Consensus 1 ~ikV~INGf-GrIGR~v~ra~~~~--~~dieVVaInd~t~~~~~A~Llk~Ds~hg~f~~~v~~~~~~~~v~g~~I~v~~~ 77 (335)
T COG0057 1 MIKVAINGF-GRIGRLVARAALER--DGDIEVVAINDLTDPDYLAHLLKYDSVHGRFDGEVEVKDDALVVNGKGIKVLAE 77 (335)
T ss_pred CCEEEEECC-CHHHHHHHHHHHHC--CCCEEEEEEECCCCHHHHHHHHHHCCCCCCCCCCCCCCCCEEEECCCEEEEEEC
T ss_conf 908999457-57889999999717--897599999368997899899864255788777322478748989952688732
Q ss_pred -C--HHHHC--CCCEEEECCCHHHHHHHHHHHCCCC-EEEEECCCCHHCCCCCCCCCCCHHHHHHCCCCCCCEECCCCCC
Q ss_conf -9--43631--8847860687589999997504565-1799614510011211123641011111033343121267643
Q gi|254780307|r 58 -K--SYDFS--DTDICLMSAGHAVSSQMSPKIAANG-CIVIDNSSAWRYDSDVPLIVPEVNPQTISLASRKNIIANPNCS 131 (335)
Q Consensus 58 -~--~~~~~--~~Divf~a~p~~~s~~~~~~~~~~g-~~VIDlS~~~R~~~d~p~~lPein~~~i~~~~~~~~VanPgC~ 131 (335)
+ ..+|+ ++|+|+-|+|-..+++-.+++.++| .+-|=.|+.- .++++.++..+|.+.++. ...+|+|..|+
T Consensus 78 ~~p~~l~w~d~gvdiVve~Tg~f~~~e~~~~hl~agGaKkV~isap~--~~~~~~vv~gvn~~~~~~--~~~iVsnaSCT 153 (335)
T COG0057 78 RDPANLPWADLGVDIVVECTGKFTGREKAEKHLKAGGAKKVLISAPG--KDDVATVVYGVNHNYYDA--GHTIVSNASCT 153 (335)
T ss_pred CCHHHCCCCCCCCCEEEECCCCCCCHHHHHHHHHHCCCCEEEECCCC--CCCCCEEEEECCCCCCCC--CCCEEEECCCH
T ss_conf 89687981212863999899876663347999874599789985789--888617998525133578--88489874511
Q ss_pred CCCCCCCCCHHHHCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCH
Q ss_conf 22211122001101787411465215221123211000000000000124554444551013740422553234720000
Q gi|254780307|r 132 TIQLVVALKPLHDLAMIKRVVVTTYQSVSGAGKKGIDELLAQTKAFLAKKTIENRVFTKNIAFNVIPHIDVFMDGGSTKE 211 (335)
Q Consensus 132 at~~~l~L~PL~~~~~i~~v~v~s~~g~SGaG~~~~~eL~~q~~~~~~~~~~~~~~~~~~la~n~iP~i~~~~~~g~~~e 211 (335)
++|+++.+++|.++|+|++..+|+..++.+--+ ...+ +..+-.-.+..+-|++| .++|+.+-
T Consensus 154 TNcLap~~kvl~d~fGI~~g~mTtVh~~T~dQ~------------~~dg-ph~~~rr~raa~~niIp-----~sTgaAka 215 (335)
T COG0057 154 TNCLAPVAKVLNDAFGIEKGLMTTVHAYTNDQK------------LVDG-PHKDLRRARAAALNIIP-----TSTGAAKA 215 (335)
T ss_pred HHHHHHHHHHHHHHCCEEEEEEEEEECCCCCCC------------CCCC-CCCCHHHHCCCCCCCCC-----CCCCCHHH
T ss_conf 300678799998860945999999970159874------------4447-65220100123477775-----78742331
Q ss_pred HHHEEEEEEEEECCCCC--CCCCCEEEEEEECCEEEEEEEECCCCCHHHHHHHHHHCCCC------EEECCCCCCCCCCH
Q ss_conf 11011210001023432--21120011211021579876724658789998731006983------88102688999761
Q gi|254780307|r 212 EWKVLVETQKILDPNIK--VSCTAARVPVFIGHAESVNIEFEKDISIKDAVAAINKSKGC------IVVDKPDKNEYITP 283 (335)
Q Consensus 212 e~k~~~E~~kil~~~~~--v~~t~~~vPv~rG~~~ti~i~l~~~~~~~~i~~~~~~~~~~------~~~~~~~~~~~~~~ 283 (335)
-.+ ++ |+++ +..+++|||+..+|+..++++++++++.+||.++++++... .+.+.+. .-+
T Consensus 216 v~~-------Vl-P~L~GKl~g~A~RVPt~~vs~~dl~v~l~k~~t~eeIn~alk~as~~~lkg~~~y~e~~~---Vs~- 283 (335)
T COG0057 216 VGL-------VL-PELKGKLTGMAIRVPTPNVSVVDLTVELEKEVTVEEINAALKAASEIGLKGILGYTEDPL---VSS- 283 (335)
T ss_pred HHH-------HC-CCCCCCEEEEEEECCCCCCEEEEEEEEECCCCCHHHHHHHHHHHHCCCCCCEEEEEECCC---CCC-
T ss_conf 766-------47-045784556899905887279999999688788999999999864026542362464130---266-
Q ss_pred HHHCCCCCEEE--EEEEECCCCCCEEEEEEEECCHHHHHHHHHHHHHHHHHH
Q ss_conf 54348973267--527763668886999997013022367999999999885
Q gi|254780307|r 284 VESIRRDLVFV--SRIRKDPTLKSGLNLWIVANNLRKGAALNAVQIAELVAQ 333 (335)
Q Consensus 284 ~~~~g~~~v~V--grvr~~~~~~~~~~~~~~~DNL~kGAAg~AVq~anlm~~ 333 (335)
+-.+.....| +.+... ...+-+.++.--||= +|-+-+-|-...++.+
T Consensus 284 -D~~~~~~ssI~d~~~t~~-~~~~~vk~~~wydNE-~gys~r~vD~~~~~~~ 332 (335)
T COG0057 284 -DFNGDPHSSIFDASATIV-LGGNLVKLVAWYDNE-WGYSNRVVDLLAMVAK 332 (335)
T ss_pred -CCCCCCCEEEEECCCEEE-ECCCEEEEEEEEECC-CCCHHHHHHHHHHHHH
T ss_conf -568994416897675687-067489999999154-3225778999999864
No 28
>PRK08289 glyceraldehyde-3-phosphate dehydrogenase; Reviewed
Probab=99.79 E-value=1.6e-17 Score=125.47 Aligned_cols=293 Identities=18% Similarity=0.195 Sum_probs=192.5
Q ss_pred EEEECCCCHHHHHHHHHHHHCCCC--EEEEEEEECC-CCCCE----------------------------EEECCCCEEE
Q ss_conf 999816677899999999744998--0789999747-65875----------------------------6002781589
Q gi|254780307|r 5 VAVVGATGNVGREMLNIICERGFP--ISEVVALASE-RSAGT----------------------------KVPFGKETID 53 (335)
Q Consensus 5 vaIiGatG~vG~el~~lL~~~~~p--~~~l~~~~s~-~~~G~----------------------------~i~~~~~~~~ 53 (335)
|-+-|. |.+|+=|-|+|.++.-+ ...|.++--. .+.+. .+-.+++.+.
T Consensus 132 VVLYGF-GRIGRLlAR~Lie~~g~g~~lrLrAIVvR~~~~~DL~KRAsLLr~DSvHG~F~Gti~vd~e~~~livNG~~I~ 210 (479)
T PRK08289 132 VVLYGF-GRIGRLLARLLIEKTGGGNGLRLRAIVVRKGKEGDLEKRASLLRRDSVHGPFNGTITVDEENNAIIANGNYIQ 210 (479)
T ss_pred EEEECC-CHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCEEEECCEEEE
T ss_conf 799767-3799999999998628987468999998359657799999876013546674760899578897998995999
Q ss_pred EE---ECCHHHHC--CCC--EEEECCCHHHHHHHHHHHCCC-CEEEEECCCCHHCCCCCCCCCCCHHHHHHCCCCCCCEE
Q ss_conf 98---77943631--884--786068758999999750456-51799614510011211123641011111033343121
Q gi|254780307|r 54 VQ---DVKSYDFS--DTD--ICLMSAGHAVSSQMSPKIAAN-GCIVIDNSSAWRYDSDVPLIVPEVNPQTISLASRKNII 125 (335)
Q Consensus 54 ~~---~~~~~~~~--~~D--ivf~a~p~~~s~~~~~~~~~~-g~~VIDlS~~~R~~~d~p~~lPein~~~i~~~~~~~~V 125 (335)
+. +.++.+|. ++| +|+-|++--..++-+.+..++ |++=+=+|+.- ..+.|.++.+||.+.++.. .++|
T Consensus 211 v~~~~~P~~i~~~~~gi~~a~vie~TG~f~~~~~~~~Hl~~~Ga~kV~lsaP~--k~~~~~iV~GVN~~~~~~~--~~Ii 286 (479)
T PRK08289 211 VIYANSPEEVDYTAYGINNALVVDNTGIWRDEEGLGQHLKSPGVAKVLLTAPG--KGDIKNIVHGVNHSDITDE--DKIV 286 (479)
T ss_pred EEECCCHHHCCHHHHCCCEEEEEECCCCCCCHHHHHHHHCCCCCCEEEEECCC--CCCCCEEEECCCHHHCCCC--CCEE
T ss_conf 99789910195234098503899566731247787535348776869993578--8875348974566666986--6467
Q ss_pred CCCCCCCCCCCCCCCHHHHCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 26764322211122001101787411465215221123211000000000000124554444551013740422553234
Q gi|254780307|r 126 ANPNCSTIQLVVALKPLHDLAMIKRVVVTTYQSVSGAGKKGIDELLAQTKAFLAKKTIENRVFTKNIAFNVIPHIDVFMD 205 (335)
Q Consensus 126 anPgC~at~~~l~L~PL~~~~~i~~v~v~s~~g~SGaG~~~~~eL~~q~~~~~~~~~~~~~~~~~~la~n~iP~i~~~~~ 205 (335)
||..||+.|+++.++-|.++|+|++..++|.++++.- +.++..... +..-++.-+.|++| .+
T Consensus 287 SnASCTTNclAPv~KvL~d~fGI~~G~mtTVHsyTnd------------Q~liD~~hk-~~RRgRaAa~NiIP-----Ts 348 (479)
T PRK08289 287 SAASCTTNAITPVLKAVNDKYGIVNGHVETVHSYTND------------QNLIDNYHK-GDRRGRSAPLNMVI-----TE 348 (479)
T ss_pred ECCCHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCC------------CCCCCCCCC-CCCCCCCCCCCCCC-----CC
T ss_conf 5476265317899998753347479998863010287------------516687788-76567733112124-----66
Q ss_pred CCCCCHHHHEEEEEEEEECCCCCCCCCCEEEEEEECCEEEEEEEECCCCCHHHHHHHHHHCC------C-CEEECCCCCC
Q ss_conf 72000011011210001023432211200112110215798767246587899987310069------8-3881026889
Q gi|254780307|r 206 GGSTKEEWKVLVETQKILDPNIKVSCTAARVPVFIGHAESVNIEFEKDISIKDAVAAINKSK------G-CIVVDKPDKN 278 (335)
Q Consensus 206 ~g~~~ee~k~~~E~~kil~~~~~v~~t~~~vPv~rG~~~ti~i~l~~~~~~~~i~~~~~~~~------~-~~~~~~~~~~ 278 (335)
+|.++.-.++.-|+. -++++..+|||+..+-++.++++++++++.+++.+++++.. + +.+.++|.
T Consensus 349 TGAAkAv~~vlPeL~------GKL~G~AiRVPtpnVS~vDLt~~l~k~~t~eeiN~~lk~aa~~~~lkgil~yt~~pe-- 420 (479)
T PRK08289 349 TGAAKAVAKALPELA------GKLTGNAIRVPTPNVSMAILNLNLEKETSREELNEYLRQMALHSPLQNQIDYTDSTE-- 420 (479)
T ss_pred CCHHHHHHHHCCCCC------CCCCEEEEECCCCCCEEEEEEEEECCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCC--
T ss_conf 635777886550558------875068998888870789999997798999999999999874497666377865899--
Q ss_pred CCCCHHHHCCCC-CEEE-EEEEECCCCCCEEEEEEEECCHHHHHHHHHHHHHHHHHH
Q ss_conf 997615434897-3267-527763668886999997013022367999999999885
Q gi|254780307|r 279 EYITPVESIRRD-LVFV-SRIRKDPTLKSGLNLWIVANNLRKGAALNAVQIAELVAQ 333 (335)
Q Consensus 279 ~~~~~~~~~g~~-~v~V-grvr~~~~~~~~~~~~~~~DNL~kGAAg~AVq~anlm~~ 333 (335)
..+ .+-.|.. .+-+ +... ...++.+.+++=-||= ||=+-|-|-+++.|+.
T Consensus 421 -lVS-sDfig~~~SsI~D~~~T--~v~g~~~~l~~WYDNE-wGYS~rvv~l~~~ma~ 472 (479)
T PRK08289 421 -VVS-SDFVGSRHAGVVDSQAT--IANGNRAVLYVWYDNE-FGYSCQVVRVMEQMAG 472 (479)
T ss_pred -EEC-CCCCCCCCCEEEECCCE--EEECCCEEEEEEECCC-HHHHHHHHHHHHHHHC
T ss_conf -872-23389985479983521--9978968999993671-9999999999999838
No 29
>TIGR01532 E4PD_g-proteo D-erythrose-4-phosphate dehydrogenase; InterPro: IPR006422 This group of sequences represent the small clade of dehydrogenases in gamma-proteobacteria which utilise NAD+ to oxidize erythrose-4-phosphate (E4P) to 4-phospho-erythronate, a precursor for the de novo synthesis of pyridoxine via 4-hydroxythreonine and D-1-deoxyxylulose . This enzyme activity appears to have evolved from glyceraldehyde-3-phosphate dehydrogenase, whose substrate differs only in the lack of one carbon relative to E4P. It is possible that some of the GAPDH enzymes may prove to be bifunctional in certain species.; GO: 0016491 oxidoreductase activity, 0051287 NAD binding.
Probab=99.57 E-value=1.5e-14 Score=107.53 Aligned_cols=233 Identities=24% Similarity=0.358 Sum_probs=155.9
Q ss_pred EEEEECCCCHHHHHHHHHHHHCCC-CEEEEEEE---ECC----------CCCCE---EEE-------CCC-----CEEEE
Q ss_conf 799981667789999999974499-80789999---747----------65875---600-------278-----15899
Q gi|254780307|r 4 KVAVVGATGNVGREMLNIICERGF-PISEVVAL---ASE----------RSAGT---KVP-------FGK-----ETIDV 54 (335)
Q Consensus 4 kvaIiGatG~vG~el~~lL~~~~~-p~~~l~~~---~s~----------~~~G~---~i~-------~~~-----~~~~~ 54 (335)
||||.|. |.+|+..+|-|-|++- ..++++++ +.. .+-|+ .+. .++ ..+.+
T Consensus 1 RVA~NGf-GRIGR~VlRAlyE~g~~~~~~vVA~N~LA~~~~~~~L~~yD~~HGRF~~~v~~d~d~l~v~~~~geyD~i~v 79 (334)
T TIGR01532 1 RVAINGF-GRIGRNVLRALYESGKRLEIEVVALNELADQASMAHLLRYDTSHGRFAKEVKVDRDQLYVNDQNGEYDAIRV 79 (334)
T ss_pred CEEEECC-CCCCCEEEEEEECCCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCHHEEECCCEEEECCCCCCCCEEEE
T ss_conf 9334047-621100033110388734148998501024689999987167777050120004627888366777204787
Q ss_pred ---EECCHHHHC--CCCEEEECCCHHHHHHHHHHHCCCCEEEEECCCCHH--CCCCCCCCCCCHHHHHHCCCCCCCEECC
Q ss_conf ---877943631--884786068758999999750456517996145100--1121112364101111103334312126
Q gi|254780307|r 55 ---QDVKSYDFS--DTDICLMSAGHAVSSQMSPKIAANGCIVIDNSSAWR--YDSDVPLIVPEVNPQTISLASRKNIIAN 127 (335)
Q Consensus 55 ---~~~~~~~~~--~~Divf~a~p~~~s~~~~~~~~~~g~~VIDlS~~~R--~~~d~p~~lPein~~~i~~~~~~~~Van 127 (335)
..++..+|. ++|+|+-|+|-=.+++-.+++.++|.+-|=-|-.-- -|=|. -++++||.+.+.. +.++|||
T Consensus 80 L~~~~~~~l~W~~L~VDlVL~C~G~Y~~r~~g~~~~~AGA~~VLFS~P~ase~DlDa-TivYGVN~~~L~a--~~~~VSN 156 (334)
T TIGR01532 80 LHSSELEALPWRELGVDLVLDCTGVYGSREQGERHIRAGAKRVLFSHPGASEADLDA-TIVYGVNQEDLSA--EHKIVSN 156 (334)
T ss_pred ECCCCCCCCCHHHCCEEEEEECCCCCCCHHHHHHHHHCCCCEEEECCCCCCCCCCCC-EEEEECCCCCCCC--CEEEEEC
T ss_conf 415886657813506008994476656668899998738863441388874012664-2685021102352--3036755
Q ss_pred CCCCCCCCCCCCCHHHHCCCCCCEEEEECCCCCCCCCCCCCCHHHH-HHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 7643222111220011017874114652152211232110000000-000001245544445510137404225532347
Q gi|254780307|r 128 PNCSTIQLVVALKPLHDLAMIKRVVVTTYQSVSGAGKKGIDELLAQ-TKAFLAKKTIENRVFTKNIAFNVIPHIDVFMDG 206 (335)
Q Consensus 128 PgC~at~~~l~L~PL~~~~~i~~v~v~s~~g~SGaG~~~~~eL~~q-~~~~~~~~~~~~~~~~~~la~n~iP~i~~~~~~ 206 (335)
..||+.|+++.|+-|.++++|+.+.|||+.++ | ..| ...-.....+... +.-.-++|| ++.-+.
T Consensus 157 aSCTTNC~vP~~KlL~~A~G~e~~~iTTIHSa-------M---~DQ~VIDAYH~eDLRRT---RaA~QSiIP-V~T~L~- 221 (334)
T TIGR01532 157 ASCTTNCIVPLIKLLDDAIGIESGTITTIHSA-------M---NDQQVIDAYHHEDLRRT---RAASQSIIP-VDTKLA- 221 (334)
T ss_pred CCCCCCCCCHHHHHHHHHCCCCCEEEEEEEEC-------C---CCCCEEECCCCHHHHHH---HHHCCCEEC-CCCCHH-
T ss_conf 65411101106432101215330146666403-------4---68850223474013444---544122200-445312-
Q ss_pred CCCCHHHHEEEEEEEEECCCC--CCCCCCEEEEEEECCEEEEEEEECCCCCHHHHHHHHHHC
Q ss_conf 200001101121000102343--221120011211021579876724658789998731006
Q gi|254780307|r 207 GSTKEEWKVLVETQKILDPNI--KVSCTAARVPVFIGHAESVNIEFEKDISIKDAVAAINKS 266 (335)
Q Consensus 207 g~~~ee~k~~~E~~kil~~~~--~v~~t~~~vPv~rG~~~ti~i~l~~~~~~~~i~~~~~~~ 266 (335)
.-..++| |++ ++....+|||+..--...++++.+++++..||...++++
T Consensus 222 ----------~GI~R~~-P~~~~r~~A~avRVPTvNV~A~Dl~~~~~~~~~~~evN~~l~~A 272 (334)
T TIGR01532 222 ----------RGIERLF-PEFADRFEAIAVRVPTVNVTALDLSVTVKRDVKANEVNRVLREA 272 (334)
T ss_pred ----------HHHHHHH-HHHCCCEEEEEEECCCCEEEEEEEEEEECCCCCHHHHHHHHHHH
T ss_conf ----------1166640-43247435789852710234555678850676388999999987
No 30
>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=99.54 E-value=1.5e-13 Score=101.48 Aligned_cols=233 Identities=21% Similarity=0.330 Sum_probs=153.1
Q ss_pred CCEEEEEECCCCHHHHHHHHHHHHCCCCEEEEEEEECCC---------CCCEEEECC---------CCEEEEEECCHHHH
Q ss_conf 961799981667789999999974499807899997476---------587560027---------81589987794363
Q gi|254780307|r 1 MTFKVAVVGATGNVGREMLNIICERGFPISEVVALASER---------SAGTKVPFG---------KETIDVQDVKSYDF 62 (335)
Q Consensus 1 M~~kvaIiGatG~vG~el~~lL~~~~~p~~~l~~~~s~~---------~~G~~i~~~---------~~~~~~~~~~~~~~ 62 (335)
|..||+|.|- |.+|+.+.+..... |..+++-++..+ +.|-++... +..+.+.-.-++-+
T Consensus 1 m~ikV~INGy-GtIGkRVAdav~~q--~DmelVGV~k~~pd~~a~~a~~kG~~vy~~~~~~~~~F~~aGi~v~Gtiedll 77 (338)
T PRK04207 1 MMIKVAVNGY-GTIGKRVADAVAAQ--DDMEVVGVSKTKPDYEARVAVERGYPLYVADPERLDAFEKAGIEVAGTIEDLL 77 (338)
T ss_pred CCEEEEEECC-CCHHHHHHHHHHCC--CCCEEEEEECCCCCHHHHHHHHCCCCEEECCHHHHHHHHHCCCCCCCCHHHHH
T ss_conf 9489998248-60558998887359--98189978679997789999986996785377666568756986667688975
Q ss_pred CCCCEEEECCCHHHHHHHHHHHCCCCEEEEECCCCHHCCCCCC-C-CCCCHHHHHHCCCCCCCEECCCCCCCCCCCCCCC
Q ss_conf 1884786068758999999750456517996145100112111-2-3641011111033343121267643222111220
Q gi|254780307|r 63 SDTDICLMSAGHAVSSQMSPKIAANGCIVIDNSSAWRYDSDVP-L-IVPEVNPQTISLASRKNIIANPNCSTIQLVVALK 140 (335)
Q Consensus 63 ~~~Divf~a~p~~~s~~~~~~~~~~g~~VIDlS~~~R~~~d~p-~-~lPein~~~i~~~~~~~~VanPgC~at~~~l~L~ 140 (335)
.++|+|+=|+|.+...+-.+...+.|.+.|=-++. +.++. . -....|-+ .+..+..|.+.+|.+|++.-.|.
T Consensus 78 ~~aDvVvDcTP~g~G~~Nk~~Y~~~g~kaIfQGGE---k~~va~~sFna~~Ny~---~a~Gk~~vrvvSCNTTgL~R~l~ 151 (338)
T PRK04207 78 EKADIVVDATPGGVGAKNKPLYEKAGVKAIFQGGE---KAEVAEVSFNALANYE---EAIGKDYVRVVSCNTTGLCRTLY 151 (338)
T ss_pred HCCCEEEECCCCCCCCCCHHHHHHCCCCEEEECCC---CCCCCCCEEEEECCHH---HHCCCCCEEEEEECCCCHHHHHH
T ss_conf 21899998999764400227688759837996588---7676775067301457---76387637996532034578899
Q ss_pred HHHHCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHEEEEEE
Q ss_conf 01101787411465215221123211000000000000124554444551013740422553234720000110112100
Q gi|254780307|r 141 PLHDLAMIKRVVVTTYQSVSGAGKKGIDELLAQTKAFLAKKTIENRVFTKNIAFNVIPHIDVFMDGGSTKEEWKVLVETQ 220 (335)
Q Consensus 141 PL~~~~~i~~v~v~s~~g~SGaG~~~~~eL~~q~~~~~~~~~~~~~~~~~~la~n~iP~i~~~~~~g~~~ee~k~~~E~~ 220 (335)
||.+.++++++.+|..-=++--+ +. ..+.. .++.|-- ..--.|+.. ..+
T Consensus 152 ~L~~~~gi~k~r~tlvRRaaDp~----~~----~kGpI---------------nai~p~p--~~iPSHHgp------Dv~ 200 (338)
T PRK04207 152 PLREAFGVKKVRATLVRRAADPN----EV----KKGPI---------------NAIVPDP--VTIPSHHGP------DVK 200 (338)
T ss_pred HHHHHCCCCEEEEEEEEECCCHH----HH----CCCCC---------------CCCCCCC--CCCCCCCCC------CHH
T ss_conf 99875182269999998338944----50----35874---------------4315799--778887660------088
Q ss_pred EEECCCCCCCCCCEEEEEEECCEEEEEEEECCCCCHHHHHHHHHHCCCCEEECC
Q ss_conf 010234322112001121102157987672465878999873100698388102
Q gi|254780307|r 221 KILDPNIKVSCTAARVPVFIGHAESVNIEFEKDISIKDAVAAINKSKGCIVVDK 274 (335)
Q Consensus 221 kil~~~~~v~~t~~~vPv~rG~~~ti~i~l~~~~~~~~i~~~~~~~~~~~~~~~ 274 (335)
-++ |++.+..+.+.||+..-|+-++.++|+++++.+++.++|++.+-+.++..
T Consensus 201 tV~-p~l~i~t~AvkVPttlmH~H~~~v~l~~~~t~~eVl~~~~~~~Ri~~~~~ 253 (338)
T PRK04207 201 TVL-PDLDIVTMAVKVPTTLMHMHSINVELKKPVTKDDVLEALENTPRILLISA 253 (338)
T ss_pred HHC-CCCCEEEEEEECCCCEEEEEEEEEEECCCCCHHHHHHHHHHCCCEEEEEC
T ss_conf 756-79871689997486305899999997998888999999963895899976
No 31
>PRK08300 acetaldehyde dehydrogenase; Validated
Probab=99.20 E-value=4.8e-11 Score=86.26 Aligned_cols=165 Identities=27% Similarity=0.357 Sum_probs=112.7
Q ss_pred CEEEEEECCCCHHHHHHHHHHHHCCCCEEEEEEEEC--CCCCCEEEE-CCCCEEEEEE----CCHHHHCCCCEEEECCCH
Q ss_conf 617999816677899999999744998078999974--765875600-2781589987----794363188478606875
Q gi|254780307|r 2 TFKVAVVGATGNVGREMLNIICERGFPISEVVALAS--ERSAGTKVP-FGKETIDVQD----VKSYDFSDTDICLMSAGH 74 (335)
Q Consensus 2 ~~kvaIiGatG~vG~el~~lL~~~~~p~~~l~~~~s--~~~~G~~i~-~~~~~~~~~~----~~~~~~~~~Divf~a~p~ 74 (335)
++|+||+| ||.+|..|+--+.+. ++++..++.. .+|.|-.-. ..+-...-+- ++..+|.++|+||=|+..
T Consensus 4 k~~vAIiG-sGnIGtDLm~Ki~Rs--~~le~~~~vG~dp~S~GL~rA~~lGv~ts~~GId~ll~~~~~~~idiVFDATSA 80 (298)
T PRK08300 4 KIKVAIIG-SGNIGTDLMIKILRS--PHLEPVAMVGIDPESDGLARARRLGVATTAEGIDGLLAHPEFDDIDIVFDATSA 80 (298)
T ss_pred CCEEEEEC-CCCHHHHHHHHHHCC--CCEEEEEEEECCCCCHHHHHHHHCCCCCCCCCHHHHHHCCCCCCCCEEEECCCH
T ss_conf 53499988-883389999998657--761069998059898499999984996637679999618335687889978980
Q ss_pred HHHHHHHHHHCCCCEEEEECCCCHHCCCCCCCCCCCHHHHHHCCCCCCCEECCCCCCCCCCCCCCCHHHHCCCCCCE-EE
Q ss_conf 89999997504565179961451001121112364101111103334312126764322211122001101787411-46
Q gi|254780307|r 75 AVSSQMSPKIAANGCIVIDNSSAWRYDSDVPLIVPEVNPQTISLASRKNIIANPNCSTIQLVVALKPLHDLAMIKRV-VV 153 (335)
Q Consensus 75 ~~s~~~~~~~~~~g~~VIDlS~~~R~~~d~p~~lPein~~~i~~~~~~~~VanPgC~at~~~l~L~PL~~~~~i~~v-~v 153 (335)
..-.+.++.+.+.|+.+|||..+-.- ||++|-||-+......+-|+|.|.|-.+++++.++.-. ..++-+ +|
T Consensus 81 ~aH~~h~~~l~~~g~~~IDLTPAaiG----p~~VP~VNl~~~l~~~NvNMVTCGGQAtiPiv~Avsrv---~~V~YaEiV 153 (298)
T PRK08300 81 GAHVENAAKLRELGVRVIDLTPAAIG----PYCVPAVNLDEHLDAPNVNMVTCGGQATIPIVAAVSRV---APVHYAEIV 153 (298)
T ss_pred HHHHHHHHHHHHCCCEEEECCCCCCC----CEEECCCCHHHHCCCCCCCEEEECCCHHHHHHHHHHHC---CCCCEEEEE
T ss_conf 66899999999739879967700269----87876377899557998643655573021899998742---763179988
Q ss_pred EECCCCC-CCC-CCCCCCHHHHHHH
Q ss_conf 5215221-123-2110000000000
Q gi|254780307|r 154 TTYQSVS-GAG-KKGIDELLAQTKA 176 (335)
Q Consensus 154 ~s~~g~S-GaG-~~~~~eL~~q~~~ 176 (335)
++..+-| |-| |..+||....|..
T Consensus 154 asiaS~SaGPgTR~NIDEf~~TT~~ 178 (298)
T PRK08300 154 ASIASKSAGPGTRANIDEFTETTSR 178 (298)
T ss_pred EEEHHCCCCHHHHHHHHHHHHHHHH
T ss_conf 6531225784676557999998999
No 32
>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating). Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc.
Probab=99.18 E-value=6.1e-11 Score=85.62 Aligned_cols=165 Identities=27% Similarity=0.344 Sum_probs=110.3
Q ss_pred CEEEEEECCCCHHHHHHHHHHHHCCCCEEEEEEEEC--CCCCCEEEE-CCCCEEEEEECCHH-HHCCCCEEEECCCHHHH
Q ss_conf 617999816677899999999744998078999974--765875600-27815899877943-63188478606875899
Q gi|254780307|r 2 TFKVAVVGATGNVGREMLNIICERGFPISEVVALAS--ERSAGTKVP-FGKETIDVQDVKSY-DFSDTDICLMSAGHAVS 77 (335)
Q Consensus 2 ~~kvaIiGatG~vG~el~~lL~~~~~p~~~l~~~~s--~~~~G~~i~-~~~~~~~~~~~~~~-~~~~~Divf~a~p~~~s 77 (335)
|+|+||+| ||.+|..|+--+.+. ++++..++.. ++|.|-.-. ..+-...-+-++.. ...++|+||=|+....-
T Consensus 1 k~~vAIiG-sGnIGtDLm~Ki~rS--~~le~~~~vG~dp~S~GL~rA~~lGv~~s~~Gid~ll~~~~idiVFDATSA~aH 77 (285)
T TIGR03215 1 KVKVAIIG-SGNIGTDLMYKLLRS--EHLEMVAMVGIDPESDGLARARELGVKTSAEGVDGLLANPDIDIVFDATSAKAH 77 (285)
T ss_pred CCEEEEEC-CCCHHHHHHHHHHCC--CCCCEEEEEECCCCCHHHHHHHHCCCCCCCCCHHHHHHCCCCCEEEECCCHHHH
T ss_conf 93699989-983389999998667--872169998248898289999984996637688989609997889966984679
Q ss_pred HHHHHHHCCCCEEEEECCCCHHCCCCCCCCCCCHHHHHHCCCCCCCEECCCCCCCCCCCCCCCHHHHCCCCCCE-EEEEC
Q ss_conf 99997504565179961451001121112364101111103334312126764322211122001101787411-46521
Q gi|254780307|r 78 SQMSPKIAANGCIVIDNSSAWRYDSDVPLIVPEVNPQTISLASRKNIIANPNCSTIQLVVALKPLHDLAMIKRV-VVTTY 156 (335)
Q Consensus 78 ~~~~~~~~~~g~~VIDlS~~~R~~~d~p~~lPein~~~i~~~~~~~~VanPgC~at~~~l~L~PL~~~~~i~~v-~v~s~ 156 (335)
.+.++.+.+.|+.+|||..+-.- ||++|-||-+......+-|+|.|.|-.+++++.++.-. ..++-+ +|++.
T Consensus 78 ~~h~~~l~~~g~~~IDLTPAaiG----p~~VP~VNl~~~l~~~NvNMVTCGGQAtiPiv~avsrv---~~V~Y~EiVasi 150 (285)
T TIGR03215 78 ARHARLLAELGKIVIDLTPAAIG----PYVVPAVNLDEHLDAPNVNMVTCGGQATIPIVAAISRV---APVHYAEIVASI 150 (285)
T ss_pred HHHHHHHHHCCCEEEECCCCCCC----CEEECCCCHHHHCCCCCCCEEEECCCCCCHHHHHHHHC---CCCCEEEEEEEE
T ss_conf 99999999759979978810159----75455538789546888633765584301899987503---543279988764
Q ss_pred CCCC-CCC-CCCCCCHHHHHHH
Q ss_conf 5221-123-2110000000000
Q gi|254780307|r 157 QSVS-GAG-KKGIDELLAQTKA 176 (335)
Q Consensus 157 ~g~S-GaG-~~~~~eL~~q~~~ 176 (335)
.+-| |-| |..+||....|..
T Consensus 151 aS~SaGPgTR~NIDEf~~TT~~ 172 (285)
T TIGR03215 151 ASRSAGPGTRANIDEFTETTSR 172 (285)
T ss_pred ECCCCCHHHHHHHHHHHHHHHH
T ss_conf 0036782566536888998899
No 33
>pfam00044 Gp_dh_N Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain. GAPDH is a tetrameric NAD-binding enzyme involved in glycolysis and glyconeogenesis. N-terminal domain is a Rossmann NAD(P) binding fold.
Probab=98.75 E-value=9.2e-08 Score=66.34 Aligned_cols=122 Identities=24% Similarity=0.301 Sum_probs=85.5
Q ss_pred EEEEEECCCCHHHHHHHHHHHHCCCCEEEEEEEECCCC-------------CCE----------EEECCCCEEEEE---E
Q ss_conf 17999816677899999999744998078999974765-------------875----------600278158998---7
Q gi|254780307|r 3 FKVAVVGATGNVGREMLNIICERGFPISEVVALASERS-------------AGT----------KVPFGKETIDVQ---D 56 (335)
Q Consensus 3 ~kvaIiGatG~vG~el~~lL~~~~~p~~~l~~~~s~~~-------------~G~----------~i~~~~~~~~~~---~ 56 (335)
|||||-|. |.+|+-++|.+.++ |.++++++-.... -|+ .+.++++.+.+. +
T Consensus 1 ikIgINGf-GRIGR~v~R~~~~~--~~i~iv~INd~~~~~~~a~LlkyDS~hG~~~~~v~~~~~~i~i~g~~I~~~~~~~ 77 (150)
T pfam00044 1 IKVGINGF-GRIGRLVLRAALAQ--DDLEVVAINDLTDPETLAYLLKYDSVHGRFDGEVEVDEDGLIVNGKKIKVFAERD 77 (150)
T ss_pred CEEEEECC-CHHHHHHHHHHHHC--CCCEEEEEECCCCHHHHHHHHHCCCCCCCCCCCCEECCCEEEECCEEEEEEECCC
T ss_conf 98989778-68999999999768--9967999854799999999984135468869864263980899995789995489
Q ss_pred CCHHHHC--CCCEEEECCCHHHHHHHHHHHCCCCEEEEECCCCHHCCCCCCCCCCCHHHHHHCCCCCCCEECCCCC
Q ss_conf 7943631--8847860687589999997504565179961451001121112364101111103334312126764
Q gi|254780307|r 57 VKSYDFS--DTDICLMSAGHAVSSQMSPKIAANGCIVIDNSSAWRYDSDVPLIVPEVNPQTISLASRKNIIANPNC 130 (335)
Q Consensus 57 ~~~~~~~--~~Divf~a~p~~~s~~~~~~~~~~g~~VIDlS~~~R~~~d~p~~lPein~~~i~~~~~~~~VanPgC 130 (335)
.++.+|. ++|+|+-|+|...+++-+....++|++-|=.|+.- .++..|.+++++|.+.+... .++|||..|
T Consensus 78 p~~i~W~~~gvDiViEcTG~f~~~~~~~~hl~~GaKkViiSaP~-~d~~~~tiV~GVN~~~~~~~--~~iiS~ASC 150 (150)
T pfam00044 78 PAELPWGELGVDIVVESTGVFTTAEKAEAHLKAGAKKVIISAPA-KDDADPTFVYGVNHDDYDPE--DDIVSNASC 150 (150)
T ss_pred CCCCCCCCCCCCEEEEECCEEEEHHHHHHHHHCCCCEEEEECCC-CCCCCCEEEECCCHHHCCCC--CCEEECCCC
T ss_conf 55286243547889980432402887777875798779995799-88867789977676567998--898968889
No 34
>smart00846 Gp_dh_N Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain. GAPDH is a tetrameric NAD-binding enzyme involved in glycolysis and glyconeogenesis. N-terminal domain is a Rossmann NAD(P) binding fold.
Probab=98.59 E-value=3.5e-07 Score=62.82 Aligned_cols=121 Identities=24% Similarity=0.328 Sum_probs=83.8
Q ss_pred EEEEEECCCCHHHHHHHHHHHHCCCCEEEEEEEECCCC-------------CCE----------EEECCCCEEEEE---E
Q ss_conf 17999816677899999999744998078999974765-------------875----------600278158998---7
Q gi|254780307|r 3 FKVAVVGATGNVGREMLNIICERGFPISEVVALASERS-------------AGT----------KVPFGKETIDVQ---D 56 (335)
Q Consensus 3 ~kvaIiGatG~vG~el~~lL~~~~~p~~~l~~~~s~~~-------------~G~----------~i~~~~~~~~~~---~ 56 (335)
|||||.|. |.+|+-++|.+.++ |.++++.+-.... -|+ .+..+++.+.+. +
T Consensus 1 ikIgINGf-GRIGR~v~R~~~~~--~~~~vv~INd~~~~~~~a~Ll~yDS~hG~~~~~v~~~~~~l~i~g~~i~~~~~~~ 77 (149)
T smart00846 1 IKVGINGF-GRIGRLVLRALLER--PDIEVVAINDLTDPETLAHLLKYDSVHGRFPGEVEVDEDGLIVNGKKIKVLAERD 77 (149)
T ss_pred CEEEEECC-CHHHHHHHHHHHHC--CCCEEEEECCCCCHHHHHHHHHHCCCCCCCCCCCEEECCEEEECCEEEEEECCCC
T ss_conf 98989778-78999999999768--9958998457776899999985324368868863260880899995764230589
Q ss_pred CCHHHHC--CCCEEEECCCHHHHHHHHHHHCCCCEEEEECCCCHHCCCCCCCCCCCHHHHHHCCCCCCCEECCCCC
Q ss_conf 7943631--8847860687589999997504565179961451001121112364101111103334312126764
Q gi|254780307|r 57 VKSYDFS--DTDICLMSAGHAVSSQMSPKIAANGCIVIDNSSAWRYDSDVPLIVPEVNPQTISLASRKNIIANPNC 130 (335)
Q Consensus 57 ~~~~~~~--~~Divf~a~p~~~s~~~~~~~~~~g~~VIDlS~~~R~~~d~p~~lPein~~~i~~~~~~~~VanPgC 130 (335)
.++.+|. ++|+|+-|++.-.+++-+..+.++|++-|=+|+.. .++.+..+.++|.+.++.. .++||+..|
T Consensus 78 p~~i~W~~~~vDiViEcTG~f~~~~~~~~hl~~gakkViisaP~--~d~~~tiV~GvN~~~~~~~--~~iiS~aSC 149 (149)
T smart00846 78 PANLPWKELGVDIVVECTGKFTTREKASAHLKAGAKKVIISAPA--KDADKTFVYGVNHDEYDPE--DHIVSNASC 149 (149)
T ss_pred CCCCCHHHCCCCEEEECCCEEEEHHHHHHHHHCCCCEEEECCCC--CCCCCEEEECCCHHHCCCC--CCEEECCCC
T ss_conf 65487234088889980551312887666664796769982798--8998789974575447998--898968879
No 35
>KOG0657 consensus
Probab=98.53 E-value=1.5e-07 Score=65.05 Aligned_cols=185 Identities=23% Similarity=0.228 Sum_probs=122.8
Q ss_pred EEEECCHHH--H--CCCCEEEECCCHHHHHHHHHHHCCCCEE--EEECCCCHHCCCCCCCCCCCHHHHHHCCCCCCCEEC
Q ss_conf 998779436--3--1884786068758999999750456517--996145100112111236410111110333431212
Q gi|254780307|r 53 DVQDVKSYD--F--SDTDICLMSAGHAVSSQMSPKIAANGCI--VIDNSSAWRYDSDVPLIVPEVNPQTISLASRKNIIA 126 (335)
Q Consensus 53 ~~~~~~~~~--~--~~~Divf~a~p~~~s~~~~~~~~~~g~~--VIDlS~~~R~~~d~p~~lPein~~~i~~~~~~~~Va 126 (335)
.+++.++.. | .++|.+.-.++-..+.+-.....+.|.+ +|+..+ .|.|+-+..||.+....... +||
T Consensus 59 ~~~~~~p~~i~w~~~g~~~v~e~tg~f~t~e~~~~~~~~gakkviisaps-----~dapmfv~gVn~~~y~~~~~--iiS 131 (285)
T KOG0657 59 IFQFRDPAKIPWGAKGADIVVESTGVFTTMEKPGKHFQGGAKKVIISAPS-----ADAPMFVMGVNGEKYDNSLD--IIS 131 (285)
T ss_pred EECCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCEEEEECCCC-----CCCCCCCCCCCCCCCCCCCC--EEE
T ss_conf 52246745476100275057505654212456652114662589960546-----77872102555555565442--230
Q ss_pred CCCCCCCCCCCCCCHHHHCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 67643222111220011017874114652152211232110000000000001245544445510137404225532347
Q gi|254780307|r 127 NPNCSTIQLVVALKPLHDLAMIKRVVVTTYQSVSGAGKKGIDELLAQTKAFLAKKTIENRVFTKNIAFNVIPHIDVFMDG 206 (335)
Q Consensus 127 nPgC~at~~~l~L~PL~~~~~i~~v~v~s~~g~SGaG~~~~~eL~~q~~~~~~~~~~~~~~~~~~la~n~iP~i~~~~~~ 206 (335)
|..|++.|+++-.+-++++|+|..-.+|+..++..-- ....+.....-.-.+.-..|+||. .+
T Consensus 132 nascttnclaPlaKVi~d~fgI~EgLMtTvha~tatQ------------ktvdgps~k~wr~g~~a~qNIiPA-----ST 194 (285)
T KOG0657 132 NASCTTNCLAPLAKVIHDNFGIMEGLMTTVHAITATQ------------KTVDGPSGKLWRDGRRALQNIIPA-----ST 194 (285)
T ss_pred CHHHHHCCCCCHHHEEECCCCCCCCCCCCEEEECCCC------------CCCCCCCCCCCCCCCHHHHCCCCC-----CC
T ss_conf 3566541235143212003441134334202202555------------435686533001463112043455-----56
Q ss_pred CCCCHHHHEEEEEEEEECCCCCCCCCCEEEEEEECCEEEEEEEECCCCCHHHHHHHHHHCCC
Q ss_conf 20000110112100010234322112001121102157987672465878999873100698
Q gi|254780307|r 207 GSTKEEWKVLVETQKILDPNIKVSCTAARVPVFIGHAESVNIEFEKDISIKDAVAAINKSKG 268 (335)
Q Consensus 207 g~~~ee~k~~~E~~kil~~~~~v~~t~~~vPv~rG~~~ti~i~l~~~~~~~~i~~~~~~~~~ 268 (335)
|.++.--|.+-|++. +.+++.-|||+. .-...++.+++++.+-+++..+.+.+..
T Consensus 195 gAakAVgKvipeLng------KLtGMAf~Vpt~-vsVvdl~~~~~k~a~~ddikkvvk~~~~ 249 (285)
T KOG0657 195 GAAKAVGKVIPELNG------KLTGMAFRVPTP-VSVVDLTCHLEKPAKYDDIKKVVKLASE 249 (285)
T ss_pred CHHHHHHHHHHHHHC------CCCCCEECCCCC-EEEEEEECCCCCCCCHHHHHHHHHHHHC
T ss_conf 177888777687617------544641237854-6755310023343325789999987403
No 36
>COG4569 MhpF Acetaldehyde dehydrogenase (acetylating) [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.44 E-value=3.1e-07 Score=63.11 Aligned_cols=136 Identities=23% Similarity=0.306 Sum_probs=96.5
Q ss_pred CEEEEEECCCCHHHHHHHHHHHHCCCCEEEEEEE-E-CCCCCCEEEE-CCCCEEEEEE----CCHHHHCCCCEEEECCCH
Q ss_conf 6179998166778999999997449980789999-7-4765875600-2781589987----794363188478606875
Q gi|254780307|r 2 TFKVAVVGATGNVGREMLNIICERGFPISEVVAL-A-SERSAGTKVP-FGKETIDVQD----VKSYDFSDTDICLMSAGH 74 (335)
Q Consensus 2 ~~kvaIiGatG~vG~el~~lL~~~~~p~~~l~~~-~-s~~~~G~~i~-~~~~~~~~~~----~~~~~~~~~Divf~a~p~ 74 (335)
|.||+|+| ||.+|..|+--+.+|+ -++|.... + .+.|.|-.-. -.+-..+-+- +..-+|.++|+||-|+..
T Consensus 4 k~kvaiig-sgni~tdlm~k~lr~g-~~le~~~mvgidp~sdglaraarlgv~tt~egv~~ll~~p~~~di~lvfdatsa 81 (310)
T COG4569 4 KRKVAIIG-SGNIGTDLMIKILRHG-QHLEMAVMVGIDPQSDGLARAARLGVATTHEGVIGLLNMPEFADIDLVFDATSA 81 (310)
T ss_pred CCEEEEEC-CCCCCHHHHHHHHHCC-CCCCCEEEECCCCCCCHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCEEEECCCC
T ss_conf 52599973-6862088999998547-865630487348885077888861985224478999839998776558852432
Q ss_pred HHHHHHHHHHCCCCEEEEECCCCHHCCCCCCCCCCCHHHHHHCCCCCCCEECCCCCCCCCCCCCCCHHH
Q ss_conf 899999975045651799614510011211123641011111033343121267643222111220011
Q gi|254780307|r 75 AVSSQMSPKIAANGCIVIDNSSAWRYDSDVPLIVPEVNPQTISLASRKNIIANPNCSTIQLVVALKPLH 143 (335)
Q Consensus 75 ~~s~~~~~~~~~~g~~VIDlS~~~R~~~d~p~~lPein~~~i~~~~~~~~VanPgC~at~~~l~L~PL~ 143 (335)
++-.+.++++.++|...|||..+-- -||++|-+|-+.-..+.+-|.|.|.|-.+..+..++....
T Consensus 82 ~~h~~~a~~~ae~gi~~idltpaai----gp~vvp~~n~~eh~~a~nvnmvtcggqatipiv~avsrvv 146 (310)
T COG4569 82 GAHVKNAAALAEAGIRLIDLTPAAI----GPYVVPVVNLEEHVDALNVNMVTCGGQATIPIVAAVSRVV 146 (310)
T ss_pred CHHHHHHHHHHHCCCCEEECCHHCC----CCEECCCCCHHHHCCCCCCCEEEECCCCCEEEHHHHHHHE
T ss_conf 0344405778864984230560004----8721265465774588875258666820001114213630
No 37
>pfam02800 Gp_dh_C Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain. GAPDH is a tetrameric NAD-binding enzyme involved in glycolysis and glyconeogenesis. C-terminal domain is a mixed alpha/antiparallel beta fold.
Probab=98.37 E-value=5.2e-07 Score=61.76 Aligned_cols=109 Identities=24% Similarity=0.257 Sum_probs=77.2
Q ss_pred CCCCCCHHHHCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHH
Q ss_conf 11122001101787411465215221123211000000000000124554444551013740422553234720000110
Q gi|254780307|r 135 LVVALKPLHDLAMIKRVVVTTYQSVSGAGKKGIDELLAQTKAFLAKKTIENRVFTKNIAFNVIPHIDVFMDGGSTKEEWK 214 (335)
Q Consensus 135 ~~l~L~PL~~~~~i~~v~v~s~~g~SGaG~~~~~eL~~q~~~~~~~~~~~~~~~~~~la~n~iP~i~~~~~~g~~~ee~k 214 (335)
+++.++.|.++|+|++..+||.+++.+- +.++......+-.-++.-+.|+||. .+|..+--.+
T Consensus 1 LAP~~kvl~~~fgI~~g~mTTvHa~t~~------------Q~l~D~~~~~d~rr~Raa~~niIPt-----~TgAakav~~ 63 (158)
T pfam02800 1 LAPLAKVLNDNFGIEKGLMTTVHAYTAD------------QKLVDGPHHKDLRRGRAAAPNIIPT-----STGAAKAVGL 63 (158)
T ss_pred CCCCHHHHHHHCCEEEEEEEEEECCCCC------------CCCCCCCCCCCCCCCHHHHCCCCCC-----CCHHHHHHHH
T ss_conf 9600887876469548899876025387------------4133455877400020122126644-----5178899976
Q ss_pred EEEEEEEEECCCCCCCCCCEEEEEEECCEEEEEEEECCCCCHHHHHHHHHHC
Q ss_conf 1121000102343221120011211021579876724658789998731006
Q gi|254780307|r 215 VLVETQKILDPNIKVSCTAARVPVFIGHAESVNIEFEKDISIKDAVAAINKS 266 (335)
Q Consensus 215 ~~~E~~kil~~~~~v~~t~~~vPv~rG~~~ti~i~l~~~~~~~~i~~~~~~~ 266 (335)
+.-|+ +-++.+.+.|||+..+.+..++++++++++.+||.++++++
T Consensus 64 vlP~L------~gkl~g~a~RVPt~~vS~vDlt~~l~k~~t~eeIn~~~~~a 109 (158)
T pfam02800 64 VLPEL------KGKLTGMAFRVPTPNVSVVDLTVELEKPVTVEEVNAALKEA 109 (158)
T ss_pred HHHHH------CCCEEEEEEECCCCCCEEEEEEEEECCCCCHHHHHHHHHHH
T ss_conf 43420------57622689834788740689999966788899999999999
No 38
>PRK13301 putative L-aspartate dehydrogenase; Provisional
Probab=98.33 E-value=2.6e-06 Score=57.59 Aligned_cols=96 Identities=16% Similarity=0.178 Sum_probs=66.2
Q ss_pred CCEEEEEECCCCHHHHHHHHHHHHCCCCEEEEEEEECCCCCCEEEECCCCEEEEEECCHHHHCCCCEEEECCCHHHHHHH
Q ss_conf 96179998166778999999997449980789999747658756002781589987794363188478606875899999
Q gi|254780307|r 1 MTFKVAVVGATGNVGREMLNIICERGFPISEVVALASERSAGTKVPFGKETIDVQDVKSYDFSDTDICLMSAGHAVSSQM 80 (335)
Q Consensus 1 M~~kvaIiGatG~vG~el~~lL~~~~~p~~~l~~~~s~~~~G~~i~~~~~~~~~~~~~~~~~~~~Divf~a~p~~~s~~~ 80 (335)
|++||+|+|. |.+|+++.+.|.....+..++..+.... ....-...++...+.++++.--...|+|..|++++.-++|
T Consensus 1 M~~rVgiiG~-GAIG~~Va~~l~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~lla~~pDlVvE~As~~Av~~~ 78 (267)
T PRK13301 1 MTHRIAFIGL-GAIASDVAAGLLADAAQPCQLAALTRNA-ADLPPALAGRVALLDGLPGLLAWRPDLVVEAAGQQAIAEH 78 (267)
T ss_pred CCEEEEEECC-CHHHHHHHHHHHHCCCCCEEEEEEECCH-HHHHHHHCCCCCCCCCHHHHHCCCCCEEEECCCHHHHHHH
T ss_conf 9517999851-6999999999861777652899981533-5555553256654577577741289999989798999999
Q ss_pred HHHHCCCCEEEEECC-CCH
Q ss_conf 975045651799614-510
Q gi|254780307|r 81 SPKIAANGCIVIDNS-SAW 98 (335)
Q Consensus 81 ~~~~~~~g~~VIDlS-~~~ 98 (335)
.+..+++|+-++=+| ++|
T Consensus 79 a~~vL~~G~dlvv~SvGAL 97 (267)
T PRK13301 79 AEGCLTAGLDMIICSAGAL 97 (267)
T ss_pred HHHHHHCCCCEEEECHHHH
T ss_conf 9999975996999823784
No 39
>CHL00194 ycf39 Ycf39; Provisional
Probab=98.24 E-value=1.1e-05 Score=53.86 Aligned_cols=91 Identities=16% Similarity=0.156 Sum_probs=57.2
Q ss_pred EEEEEECCCCHHHHHHHHHHHHCCCCEEEEEEEECCCCCCEEEECCCCEEEEEECCH-----HHHCCCCEEEECCCHHHH
Q ss_conf 179998166778999999997449980789999747658756002781589987794-----363188478606875899
Q gi|254780307|r 3 FKVAVVGATGNVGREMLNIICERGFPISEVVALASERSAGTKVPFGKETIDVQDVKS-----YDFSDTDICLMSAGHAVS 77 (335)
Q Consensus 3 ~kvaIiGatG~vG~el~~lL~~~~~p~~~l~~~~s~~~~G~~i~~~~~~~~~~~~~~-----~~~~~~Divf~a~p~~~s 77 (335)
|+|.|+||||++|+.+++.|.+++|+ +..+.-+......+...+-++..-|+.+ ..+.++|.||.+.+...+
T Consensus 1 M~ILV~GATG~lGr~vVr~Ll~~G~~---Vr~lvRnp~ka~~l~~~Gve~v~gDl~dpesl~~Al~GvdaVi~~~~~~~~ 77 (319)
T CHL00194 1 MSLLVIGATGTLGRQIVRRALDEGYQ---VKCLVRNLRKAAFLKEWGAELVYGDLSLPETIPPALEGITAIIDASTSRPS 77 (319)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCC---EEEEECCHHHHHHHHHCCCEEEEECCCCHHHHHHHHCCCCEEEEECCCCCC
T ss_conf 97999899858999999999968890---899957867632342159679994278877899996599679994566778
Q ss_pred -------------HHHHHHHCCCCE-EEEECCC
Q ss_conf -------------999975045651-7996145
Q gi|254780307|r 78 -------------SQMSPKIAANGC-IVIDNSS 96 (335)
Q Consensus 78 -------------~~~~~~~~~~g~-~VIDlS~ 96 (335)
..++..+.++|+ .+|=+|+
T Consensus 78 ~~~~~~~vd~~g~~~li~AAk~aGVkr~V~lS~ 110 (319)
T CHL00194 78 DLNNAYQIDLEGKLALIEAAKAAKVKRFIFFSI 110 (319)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECC
T ss_conf 862088988988999999999849988999613
No 40
>PRK08655 prephenate dehydrogenase; Provisional
Probab=98.11 E-value=2.5e-05 Score=51.59 Aligned_cols=122 Identities=19% Similarity=0.336 Sum_probs=78.9
Q ss_pred EEEEEECCCCHHHHHHHHHHHHCCCCEEEEEEEECCCCCCEEEECCCCEEEEEEC--CHHHHCCCCEEEECCCHHHHHHH
Q ss_conf 1799981667789999999974499807899997476587560027815899877--94363188478606875899999
Q gi|254780307|r 3 FKVAVVGATGNVGREMLNIICERGFPISEVVALASERSAGTKVPFGKETIDVQDV--KSYDFSDTDICLMSAGHAVSSQM 80 (335)
Q Consensus 3 ~kvaIiGatG~vG~el~~lL~~~~~p~~~l~~~~s~~~~G~~i~~~~~~~~~~~~--~~~~~~~~Divf~a~p~~~s~~~ 80 (335)
|||+|||++|--|+=+.+.+...+| ++...+.+...|+.+.- ++-++.. ..+...++|+|++|.|-..+.++
T Consensus 1 mkI~IIGG~G~MG~~Fa~~f~~sGy---eV~I~gRd~~k~~~va~---~LGv~~~~~~~e~~~~advVIvsVPI~~T~~V 74 (441)
T PRK08655 1 MKISIIGGTGGLGKWFARFLKDKGY---EVIVWGRDPKKGKEVAK---ELGVEYASDNIDAAKDGDIVIVSVPINVTEDV 74 (441)
T ss_pred CEEEEEECCCHHHHHHHHHHHHCCC---EEEEEECCCCHHHHHHH---HHCCCCCCCHHHHHHCCCEEEEECCHHHHHHH
T ss_conf 9799994798177999999986798---89998157313567888---73862224478897249999998488999999
Q ss_pred HHHH---CCCCEEEEECCCCHH-----C----CCCCC-CCCCCHHHHHHCCCCCCCEECCCCC
Q ss_conf 9750---456517996145100-----1----12111-2364101111103334312126764
Q gi|254780307|r 81 SPKI---AANGCIVIDNSSAWR-----Y----DSDVP-LIVPEVNPQTISLASRKNIIANPNC 130 (335)
Q Consensus 81 ~~~~---~~~g~~VIDlS~~~R-----~----~~d~p-~~lPein~~~i~~~~~~~~VanPgC 130 (335)
..++ ...+|.+.|++|-=. | ..++| +++-.++...+.-..+|.+|.+|+=
T Consensus 75 I~~laP~l~~~~lL~DitSvK~~p~~aMl~~~~~~~~viglHPMFGP~v~sl~gQvVVvcP~~ 137 (441)
T PRK08655 75 IREVAPHVKEGSLLMDVTSVKERPVEAMKEFAPEGVEILPTHPMFGPRTPSLRGQVVILTPTE 137 (441)
T ss_pred HHHHHCCCCCCCEEEECCCCCHHHHHHHHHHCCCCCCEECCCCCCCCCCCCCCCCEEEEECCC
T ss_conf 999742489996999831041779999997565788774548887999866578889996389
No 41
>KOG4039 consensus
Probab=98.07 E-value=4e-05 Score=50.35 Aligned_cols=71 Identities=23% Similarity=0.267 Sum_probs=43.0
Q ss_pred CC-EEEEEECCCCHHHHHHHHHHHHCCCCEEE-EEEEECCCCCCEEEECCCCEEEEEECC-----H--HHHCCCCEEEEC
Q ss_conf 96-17999816677899999999744998078-999974765875600278158998779-----4--363188478606
Q gi|254780307|r 1 MT-FKVAVVGATGNVGREMLNIICERGFPISE-VVALASERSAGTKVPFGKETIDVQDVK-----S--YDFSDTDICLMS 71 (335)
Q Consensus 1 M~-~kvaIiGatG~vG~el~~lL~~~~~p~~~-l~~~~s~~~~G~~i~~~~~~~~~~~~~-----~--~~~~~~Divf~a 71 (335)
|. |...|+||||.+|++|++.+++. |.+. +..+.-.+. .-+..++.......+ + .++-+.|+.|.|
T Consensus 16 mq~~s~fvlGAtG~~G~~llk~~~E~--~~FSKV~~i~RR~~---~d~at~k~v~q~~vDf~Kl~~~a~~~qg~dV~Fca 90 (238)
T KOG4039 16 MQNMSGFVLGATGLCGGGLLKHAQEA--PQFSKVYAILRREL---PDPATDKVVAQVEVDFSKLSQLATNEQGPDVLFCA 90 (238)
T ss_pred HHCCCEEEEECCCCCCHHHHHHHHHC--CCCEEEEEEEECCC---CCCCCCCEEEEEEECHHHHHHHHHHHCCCCEEEEE
T ss_conf 33022478853553138999998856--56206999973157---98421364546783268888877650288568996
Q ss_pred CCHHH
Q ss_conf 87589
Q gi|254780307|r 72 AGHAV 76 (335)
Q Consensus 72 ~p~~~ 76 (335)
++..-
T Consensus 91 LgTTR 95 (238)
T KOG4039 91 LGTTR 95 (238)
T ss_pred ECCCC
T ss_conf 11355
No 42
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=98.05 E-value=2.9e-05 Score=51.15 Aligned_cols=95 Identities=21% Similarity=0.234 Sum_probs=65.2
Q ss_pred CCEEEEEECCCCHHHHHHHHHHHHCCCCEEEEEEEE-CCC--CCCEEEEC----CCCEEEEEECCHHHHCCCCEEEECCC
Q ss_conf 961799981667789999999974499807899997-476--58756002----78158998779436318847860687
Q gi|254780307|r 1 MTFKVAVVGATGNVGREMLNIICERGFPISEVVALA-SER--SAGTKVPF----GKETIDVQDVKSYDFSDTDICLMSAG 73 (335)
Q Consensus 1 M~~kvaIiGatG~vG~el~~lL~~~~~p~~~l~~~~-s~~--~~G~~i~~----~~~~~~~~~~~~~~~~~~Divf~a~p 73 (335)
|.|||+|.|++|--|+++++.+.+. +.++|.... ++. ..|+.+.. ......+.+--...+..+|+++=...
T Consensus 1 m~ikI~i~Ga~GrMG~~i~~~i~~~--~~~~l~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~DVvIDFS~ 78 (265)
T PRK00048 1 MMIKVGVAGASGRMGRELIEAVEAA--EDLELVAALDRPGSPLVGQDAGELAGLGKLGVPITDDLEAVLDDFDVLIDFTT 78 (265)
T ss_pred CCEEEEEECCCCHHHHHHHHHHHHC--CCCEEEEEEECCCCCCCCCCHHHHCCCCCCCCEECCCHHHHHCCCCEEEECCC
T ss_conf 9459999888887799999999868--99799999946897233653566527676784311789886055998998998
Q ss_pred HHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf 589999997504565179961451
Q gi|254780307|r 74 HAVSSQMSPKIAANGCIVIDNSSA 97 (335)
Q Consensus 74 ~~~s~~~~~~~~~~g~~VIDlS~~ 97 (335)
.+.+.+..+.+.+.++.+|--+.=
T Consensus 79 p~~~~~~~~~~~~~~~~~ViGTTG 102 (265)
T PRK00048 79 PEATLENLEFALEHGKPLVIGTTG 102 (265)
T ss_pred HHHHHHHHHHHHHCCCCEEEEECC
T ss_conf 899999999999749977996089
No 43
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=98.00 E-value=1.6e-05 Score=52.81 Aligned_cols=91 Identities=16% Similarity=0.186 Sum_probs=60.7
Q ss_pred CEEEEEECCCCHHHHHHHHHHHHCCCCEEEEEEEECCCCC-CEEEECCCCEEEEEECCHHHHCCCCEEEECCCHHHHHHH
Q ss_conf 6179998166778999999997449980789999747658-756002781589987794363188478606875899999
Q gi|254780307|r 2 TFKVAVVGATGNVGREMLNIICERGFPISEVVALASERSA-GTKVPFGKETIDVQDVKSYDFSDTDICLMSAGHAVSSQM 80 (335)
Q Consensus 2 ~~kvaIiGatG~vG~el~~lL~~~~~p~~~l~~~~s~~~~-G~~i~~~~~~~~~~~~~~~~~~~~Divf~a~p~~~s~~~ 80 (335)
+|||+|+|. |+.|.-|-..|.++++ ++..+..+... -+....+--+... .+...+.++|+||+|+|-+...++
T Consensus 1 ~mkI~IiGl-GLIGgSla~al~~~~~---~V~g~d~~~~~~~~A~~~g~id~~~--~~~~~~~~aDliila~Pv~~~~~~ 74 (280)
T PRK07417 1 SMNIGIVGL-GLIGGSLGLDLRSLGH---TVYGVSRRESTCERAIERGLVDEAS--TDLSLLKDCDLVILALPIGLLLPP 74 (280)
T ss_pred CCEEEEEEC-CHHHHHHHHHHHHCCC---EEEEEECCHHHHHHHHHCCCCCEEC--CCHHHHCCCCEEEECCCHHHHHHH
T ss_conf 978999931-8579999999996899---7999979999999999869975202--787460579989987974778999
Q ss_pred HHHHC---CCCEEEEECCCCH
Q ss_conf 97504---5651799614510
Q gi|254780307|r 81 SPKIA---ANGCIVIDNSSAW 98 (335)
Q Consensus 81 ~~~~~---~~g~~VIDlS~~~ 98 (335)
.+++. +.++.|.|.+|.-
T Consensus 75 ~~~~~~~l~~~~iitDv~SvK 95 (280)
T PRK07417 75 SEELIPALPPEAIVTDVGSVK 95 (280)
T ss_pred HHHHHHHCCCCCEEEECHHHH
T ss_conf 999986478984899652230
No 44
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=97.96 E-value=1.9e-05 Score=52.33 Aligned_cols=92 Identities=20% Similarity=0.257 Sum_probs=64.4
Q ss_pred CEEEEEECCCCHHHHHHHHHHHHCCCCEEEEEEEECCCCCCEEE----ECCCCEEEEEECCHHHHCCCCEEEECCCHHHH
Q ss_conf 61799981667789999999974499807899997476587560----02781589987794363188478606875899
Q gi|254780307|r 2 TFKVAVVGATGNVGREMLNIICERGFPISEVVALASERSAGTKV----PFGKETIDVQDVKSYDFSDTDICLMSAGHAVS 77 (335)
Q Consensus 2 ~~kvaIiGatG~vG~el~~lL~~~~~p~~~l~~~~s~~~~G~~i----~~~~~~~~~~~~~~~~~~~~Divf~a~p~~~s 77 (335)
+|||+|+|. |.+|+.+.+.|.+ +.+.++|..+.+.+ .++.- .++. ...+.+++. -....|+|.-|++++.-
T Consensus 6 kmrVgliG~-GaIG~~va~~l~~-g~~~~~l~~V~~r~-~~~~~~~~~~~~~-~~~~~~~~~-l~~~~DlVVE~A~~~av 80 (271)
T PRK13302 6 ELRVAIAGL-GAIGKAIAQALDR-GLPGLTLSAVAVRD-PQRHADFIWGLRR-PPPVVPLDQ-LATHADIVVEAAPASVL 80 (271)
T ss_pred CCEEEEECC-CHHHHHHHHHHHC-CCCCCEEEEEECCC-HHHHHHHHHHCCC-CCCCCCHHH-HHHCCCEEEECCCHHHH
T ss_conf 677999886-7899999999975-89981899999288-7888999873589-874078899-60189999989898999
Q ss_pred HHHHHHHCCCCEEEEEC-CCCH
Q ss_conf 99997504565179961-4510
Q gi|254780307|r 78 SQMSPKIAANGCIVIDN-SSAW 98 (335)
Q Consensus 78 ~~~~~~~~~~g~~VIDl-S~~~ 98 (335)
++|.++++++|+-++=+ .+++
T Consensus 81 ~~~~~~~L~~G~dlvv~SvGAL 102 (271)
T PRK13302 81 RAIVEPVLAAGKKAIVLSVGAL 102 (271)
T ss_pred HHHHHHHHHCCCCEEEECHHHH
T ss_conf 9999999975997899755795
No 45
>PRK08507 prephenate dehydrogenase; Validated
Probab=97.94 E-value=2.5e-05 Score=51.57 Aligned_cols=91 Identities=16% Similarity=0.228 Sum_probs=61.2
Q ss_pred EEEEEECCCCHHHHHHHHHHHHCCCCEEEEEEEECCCCCCE-EEECCCCEEEEEECCHHHHCCCCEEEECCCHHHHHHHH
Q ss_conf 17999816677899999999744998078999974765875-60027815899877943631884786068758999999
Q gi|254780307|r 3 FKVAVVGATGNVGREMLNIICERGFPISEVVALASERSAGT-KVPFGKETIDVQDVKSYDFSDTDICLMSAGHAVSSQMS 81 (335)
Q Consensus 3 ~kvaIiGatG~vG~el~~lL~~~~~p~~~l~~~~s~~~~G~-~i~~~~~~~~~~~~~~~~~~~~Divf~a~p~~~s~~~~ 81 (335)
|||+|+|. |+.|.-|-+-|.+.+ +..++..+..+...-+ ....+--+. + .+..++.++|+||+|+|-....++.
T Consensus 1 M~I~IiGl-GLiGgSla~alk~~~-~~~~V~g~d~~~~~~~~A~~~g~id~-~--~~~~~i~~aDlVila~Pv~~~~~~l 75 (275)
T PRK08507 1 MKIGIIGL-GLMGGSLGLALKENK-LISCVYGYDHNEEHEKDALDLGLVDE-I--VEFEEIKECDVIFLAIPVDAIIEIL 75 (275)
T ss_pred CEEEEEEC-CHHHHHHHHHHHHCC-CCCEEEEEECCHHHHHHHHHCCCCCC-C--CCHHHCCCCCEEEEECCHHHHHHHH
T ss_conf 98999900-878999999999509-98679999599999999998699861-0--6731236579899917699999999
Q ss_pred HHHC--CCCEEEEECCCCH
Q ss_conf 7504--5651799614510
Q gi|254780307|r 82 PKIA--ANGCIVIDNSSAW 98 (335)
Q Consensus 82 ~~~~--~~g~~VIDlS~~~ 98 (335)
+++. ..++.|.|.+|.=
T Consensus 76 ~~l~~l~~~~iitDv~SvK 94 (275)
T PRK08507 76 QKLLDIKENTTIIDLGSTK 94 (275)
T ss_pred HHHHHCCCCCEEEECCCHH
T ss_conf 9986046788898343128
No 46
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=97.92 E-value=2.6e-05 Score=51.48 Aligned_cols=139 Identities=20% Similarity=0.228 Sum_probs=79.9
Q ss_pred EEEEEECCCCHHHHHHHHHHHHCCCCEEEEEEEECCCCC-CEEEECCCCEEEEEECCHHHHCCCCEEEECCCHHHHHHHH
Q ss_conf 179998166778999999997449980789999747658-7560027815899877943631884786068758999999
Q gi|254780307|r 3 FKVAVVGATGNVGREMLNIICERGFPISEVVALASERSA-GTKVPFGKETIDVQDVKSYDFSDTDICLMSAGHAVSSQMS 81 (335)
Q Consensus 3 ~kvaIiGatG~vG~el~~lL~~~~~p~~~l~~~~s~~~~-G~~i~~~~~~~~~~~~~~~~~~~~Divf~a~p~~~s~~~~ 81 (335)
|||+|+|. |.+|+.+.+.|.+.. ..++|.++.+.+.. -+.+........+.++++. +...|+|.-|++++.-++|.
T Consensus 2 ~rVgiIG~-GaIG~~Va~~l~~g~-~~~~L~~V~~r~~~~a~~~a~~~~~~~~~~ld~l-~~~~DlVVE~A~~~av~~~~ 78 (265)
T PRK13304 2 LKIGIVGC-GAIANLITKAIDSGR-INAELLAFYDRNLEKAENLAEKTGAPACLSIDEL-VKDVDLVVECASQKAVEDTV 78 (265)
T ss_pred CEEEEECC-CHHHHHHHHHHHCCC-CCEEEEEEECCCHHHHHHHHHCCCCCCCCCHHHH-HHCCCEEEECCCHHHHHHHH
T ss_conf 49999865-789999999986799-8649999978987898877641599712798998-33899999898989999999
Q ss_pred HHHCCCCEEEEECC-CCHHCCCCCCCCCCCHHHHHHCCCCCCC-EECCCCCCCCCCCCCCCHHH--HCCCCCCEEEEEC
Q ss_conf 75045651799614-5100112111236410111110333431-21267643222111220011--0178741146521
Q gi|254780307|r 82 PKIAANGCIVIDNS-SAWRYDSDVPLIVPEVNPQTISLASRKN-IIANPNCSTIQLVVALKPLH--DLAMIKRVVVTTY 156 (335)
Q Consensus 82 ~~~~~~g~~VIDlS-~~~R~~~d~p~~lPein~~~i~~~~~~~-~VanPgC~at~~~l~L~PL~--~~~~i~~v~v~s~ 156 (335)
+.+.++|+-++=+| ++|- |+ ++..+..+.+++.+ -|- .+++.+..|--|. +.+.+++|.+++.
T Consensus 79 ~~~L~~G~dlvv~SvGALa-D~-------~l~~~L~~~A~~~g~~i~----ipsGAigGlD~l~aa~~~~l~~V~~~tr 145 (265)
T PRK13304 79 PKSLNNGKDVIIMSVGALA-DK-------ELFLKLYKLAKENGCKIY----LPSGAIAGIDGIKAASLGEIESVTLTTR 145 (265)
T ss_pred HHHHHCCCCEEEECHHHHC-CH-------HHHHHHHHHHHHCCCEEE----ECCCHHHHHHHHHHHHCCCCCEEEEEEE
T ss_conf 9999759989998136855-98-------999999999973797799----8261344278899986589757999987
No 47
>TIGR01921 DAP-DH diaminopimelate dehydrogenase; InterPro: IPR010190 This entry represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine biosynthesis in Corynebacterium, Bacterioides, Porphyromonas and other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterised ..
Probab=97.90 E-value=9.6e-06 Score=54.09 Aligned_cols=121 Identities=22% Similarity=0.329 Sum_probs=79.6
Q ss_pred CC-EEEEEECCCCHHHHHHHHHHHHCCCCEEEEEEEECCCCCC-EEEECCCCEEEEEECCHHHHCCCCEEEECCCHHHHH
Q ss_conf 96-1799981667789999999974499807899997476587-560027815899877943631884786068758999
Q gi|254780307|r 1 MT-FKVAVVGATGNVGREMLNIICERGFPISEVVALASERSAG-TKVPFGKETIDVQDVKSYDFSDTDICLMSAGHAVSS 78 (335)
Q Consensus 1 M~-~kvaIiGatG~vG~el~~lL~~~~~p~~~l~~~~s~~~~G-~~i~~~~~~~~~~~~~~~~~~~~Divf~a~p~~~s~ 78 (335)
|| +|+||||- |..|+-..++|... |.+||+.+-+.+-+- +++...-..+.|.+... ...++|+.|||.|+..-.
T Consensus 1 M~kiRaaIVGY-GNlG~~V~~ai~~~--PDmElvgv~~Rrd~~t~~va~~~~vy~V~~~~K-~~~dvdv~iLC~gsatd~ 76 (326)
T TIGR01921 1 MSKIRAAIVGY-GNLGKSVEEAIQQA--PDMELVGVFRRRDAETLDVAEELAVYAVVEDEK-ELEDVDVLILCTGSATDL 76 (326)
T ss_pred CCEEEEEEECC-CCHHHHHHHHHHCC--CCCEEEEEEEECCCCCCCHHHCCCHHHHHHHHH-CCCCEEEEEECCCCCCCC
T ss_conf 97057888622-32007999998408--980489988707887576112252022222232-028825999738864555
Q ss_pred HHHHHHCCCCEEEEECCCCHHCCCCCCCCCCCHHHHHHC----CCCCCCEECC---CCCCCC
Q ss_conf 999750456517996145100112111236410111110----3334312126---764322
Q gi|254780307|r 79 QMSPKIAANGCIVIDNSSAWRYDSDVPLIVPEVNPQTIS----LASRKNIIAN---PNCSTI 133 (335)
Q Consensus 79 ~~~~~~~~~g~~VIDlS~~~R~~~d~p~~lPein~~~i~----~~~~~~~Van---PgC~at 133 (335)
++.......+.--||---.||- +|++. +.++ ..++-.+||. ||.+-.
T Consensus 77 pe~~p~fA~~~nTvDsfD~H~~-------Ip~~r-~~~DaaA~~~g~VSvis~GWDPG~fSi 130 (326)
T TIGR01921 77 PEQKPYFAAFINTVDSFDIHTD-------IPDLR-RTLDAAAKEAGAVSVISAGWDPGLFSI 130 (326)
T ss_pred CCCCCCCEEEEECCCCCCCCCC-------HHHHH-HHHHHHHHHCCCEEEEEECCCCCCHHH
T ss_conf 4345100122101236502242-------07899-999999986198789983478872679
No 48
>TIGR03466 HpnA hopanoid-associated sugar epimerase. The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.
Probab=97.86 E-value=0.00018 Score=46.42 Aligned_cols=92 Identities=25% Similarity=0.256 Sum_probs=52.1
Q ss_pred EEEEEECCCCHHHHHHHHHHHHCCCCEEEEEEEECCCCCCEEEECCCCEEEEEECCHH-----HHCCCCEEEECCCH---
Q ss_conf 1799981667789999999974499807899997476587560027815899877943-----63188478606875---
Q gi|254780307|r 3 FKVAVVGATGNVGREMLNIICERGFPISEVVALASERSAGTKVPFGKETIDVQDVKSY-----DFSDTDICLMSAGH--- 74 (335)
Q Consensus 3 ~kvaIiGatG~vG~el~~lL~~~~~p~~~l~~~~s~~~~G~~i~~~~~~~~~~~~~~~-----~~~~~Divf~a~p~--- 74 (335)
|||.|.|+||++|+.|++.|.+++| ++..+.-..+.-+.+...+-+...-|+.+. .+.++|+||-++..
T Consensus 1 MriLVTGgtGfiG~~l~~~L~~~G~---~V~~l~r~~~~~~~~~~~~~~~~~gDl~d~~~~~~~~~~~d~ViH~Aa~~~~ 77 (328)
T TIGR03466 1 MKVLVTGATGFVGSAVVRLLLERGE---EVRVLVRPTSDRRNLEGLDVEIVEGDLRDPASLRKALAGCRALFHVAADYRL 77 (328)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCC---EEEEEECCCCCHHHHCCCCCEEEEEECCCHHHHHHHHHCCCEEEEECCCCCC
T ss_conf 9499986777999999999997849---8999989998655652179779982079999999997178589761342344
Q ss_pred -------------HHHHHHHHHHCCCCE-EEEECCCC
Q ss_conf -------------899999975045651-79961451
Q gi|254780307|r 75 -------------AVSSQMSPKIAANGC-IVIDNSSA 97 (335)
Q Consensus 75 -------------~~s~~~~~~~~~~g~-~VIDlS~~ 97 (335)
.-+..+.+.+.+.|+ ++|=.||.
T Consensus 78 ~~~~~~~~~~~Nv~gt~nll~aa~~~~v~r~V~~SS~ 114 (328)
T TIGR03466 78 WAPDPEEMYRANVEGTRNLLRAALEAGVERVVYTSSV 114 (328)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEE
T ss_conf 6799899999999999999999997298743156335
No 49
>PRK10206 putative dehydrogenase; Provisional
Probab=97.84 E-value=8e-05 Score=48.53 Aligned_cols=89 Identities=12% Similarity=0.141 Sum_probs=59.0
Q ss_pred CCEEEEEECCCCHHHHHH-HHHHHHCCCCEEEEEEEECCCCCCEEEE--CCCCEEEEEECCHHH-HCCCCEEEECCCHHH
Q ss_conf 961799981667789999-9999744998078999974765875600--278158998779436-318847860687589
Q gi|254780307|r 1 MTFKVAVVGATGNVGREM-LNIICERGFPISEVVALASERSAGTKVP--FGKETIDVQDVKSYD-FSDTDICLMSAGHAV 76 (335)
Q Consensus 1 M~~kvaIiGatG~vG~el-~~lL~~~~~p~~~l~~~~s~~~~G~~i~--~~~~~~~~~~~~~~~-~~~~Divf~a~p~~~ 76 (335)
|++|+||+|. |+.|+.+ +-.+..+ -+.+++..+.+.+..-+... +.+-. ...+.++.- -.++|+|+.|+|+..
T Consensus 1 m~irvaiiG~-G~~~~~fH~P~i~~~-~~~~~v~~v~~~~~~~~~~a~~~~~~~-~~~~~~~ll~~~~id~V~i~tP~~~ 77 (345)
T PRK10206 1 MVINCAFIGF-GKSTTRYHLPYVLNR-KDSWHVAHIFRRHAKPEEQAPIYSHIH-FTSDLDEVLNDPDVKLVVVCTHADS 77 (345)
T ss_pred CEEEEEEECC-CHHHHHHHHHHHHCC-CCCEEEEEEECCCHHHHHHHHHCCCCC-EECCHHHHHCCCCCCEEEECCCCHH
T ss_conf 9247999926-499999989999638-995799999788761888887769981-2289999954999999998799578
Q ss_pred HHHHHHHHCCCCEEEE
Q ss_conf 9999975045651799
Q gi|254780307|r 77 SSQMSPKIAANGCIVI 92 (335)
Q Consensus 77 s~~~~~~~~~~g~~VI 92 (335)
=.+++.+++++|+.|+
T Consensus 78 H~~~a~~al~aGkhV~ 93 (345)
T PRK10206 78 HFEYAKRALEAGKNVL 93 (345)
T ss_pred HHHHHHHHHHCCCCEE
T ss_conf 9999999997899289
No 50
>PRK13303 L-aspartate dehydrogenase; Provisional
Probab=97.84 E-value=5.9e-05 Score=49.32 Aligned_cols=137 Identities=18% Similarity=0.164 Sum_probs=78.2
Q ss_pred EEEEEECCCCHHHHHHHHHHHHCCCCEEEEEEEE-CCCCCCEEEECCCCEE-EEEECCHHHHCCCCEEEECCCHHHHHHH
Q ss_conf 1799981667789999999974499807899997-4765875600278158-9987794363188478606875899999
Q gi|254780307|r 3 FKVAVVGATGNVGREMLNIICERGFPISEVVALA-SERSAGTKVPFGKETI-DVQDVKSYDFSDTDICLMSAGHAVSSQM 80 (335)
Q Consensus 3 ~kvaIiGatG~vG~el~~lL~~~~~p~~~l~~~~-s~~~~G~~i~~~~~~~-~~~~~~~~~~~~~Divf~a~p~~~s~~~ 80 (335)
|||+|+|. |.+|+.+.+.|... +..++..+. ..+.....-....+.. .+.+++.. ..+.|+|.-|+++..-++|
T Consensus 2 mrVgiiG~-GaIG~~va~~l~~~--~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~L-~~~~DlVVE~A~~~av~~~ 77 (265)
T PRK13303 2 MKVAMIGF-GAIAAAVYELLEHD--PRLRVDWVIVPEHSVDAVRRALGRAVQVVSSVDAL-AQRPDLVVECAGHAALKEH 77 (265)
T ss_pred CEEEEECC-CHHHHHHHHHHHCC--CCCEEEEEEECCCCHHHHHHHHCCCCCCCCCHHHH-HHCCCEEEECCCHHHHHHH
T ss_conf 29999854-68999999998449--97279999946852677875304588644798898-2379999989888999999
Q ss_pred HHHHCCCCEEEEECC-CCHHCCCCCCCCCCCHHHHHHCCCCC--CCEECCCCCCCCCCCCCCCHH--HHCCCCCCEEEEE
Q ss_conf 975045651799614-51001121112364101111103334--312126764322211122001--1017874114652
Q gi|254780307|r 81 SPKIAANGCIVIDNS-SAWRYDSDVPLIVPEVNPQTISLASR--KNIIANPNCSTIQLVVALKPL--HDLAMIKRVVVTT 155 (335)
Q Consensus 81 ~~~~~~~g~~VIDlS-~~~R~~~d~p~~lPein~~~i~~~~~--~~~VanPgC~at~~~l~L~PL--~~~~~i~~v~v~s 155 (335)
.++++++|+-++=+| ++|- |+ ++..+..+.+++ .+++- +++.+..|=-| .+.++++++.+++
T Consensus 78 ~~~~L~~g~dl~v~SvgALa-D~-------~~~~~l~~~A~~~~~~i~i-----psGAigGlD~l~aa~~~~i~~V~~~t 144 (265)
T PRK13303 78 VVPILKAGIDCAVASVGALA-DE-------ALRERLEQAAEAGGARLHL-----LSGAIGGIDALAAAKEGGLDEVRYTG 144 (265)
T ss_pred HHHHHHCCCCEEEECCHHHC-CH-------HHHHHHHHHHHHCCCEEEE-----CCCHHHHHHHHHHHHCCCCCEEEEEE
T ss_conf 99999729988998815857-98-------8999999999868975997-----26234406799998718973899998
Q ss_pred C
Q ss_conf 1
Q gi|254780307|r 156 Y 156 (335)
Q Consensus 156 ~ 156 (335)
.
T Consensus 145 ~ 145 (265)
T PRK13303 145 R 145 (265)
T ss_pred E
T ss_conf 6
No 51
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=97.84 E-value=5.6e-05 Score=49.46 Aligned_cols=161 Identities=15% Similarity=0.248 Sum_probs=83.7
Q ss_pred CCEEEEEECCCCHHHHHHHHHHHHCCCCEEEEEEEECCCCCCEEEECCCC-EEEEEECCHHHHCCCCEEEECCCHHHHHH
Q ss_conf 96179998166778999999997449980789999747658756002781-58998779436318847860687589999
Q gi|254780307|r 1 MTFKVAVVGATGNVGREMLNIICERGFPISEVVALASERSAGTKVPFGKE-TIDVQDVKSYDFSDTDICLMSAGHAVSSQ 79 (335)
Q Consensus 1 M~~kvaIiGatG~vG~el~~lL~~~~~p~~~l~~~~s~~~~G~~i~~~~~-~~~~~~~~~~~~~~~Divf~a~p~~~s~~ 79 (335)
|.|||+++|+ |-.|+.+++-|.++.++..++... +++..+.-.+..+ ...+..-..+...++|++|+|.......+
T Consensus 1 mm~kI~~IG~-G~Mg~Aii~gl~~~~~~~~~i~v~--~r~~~~~~~l~~~~~v~~~~~~~~~~~~~diIiLaVKP~~~~~ 77 (267)
T PRK11880 1 MMKKIGFIGG-GNMASAIIGGLLASGVPAKDIIVS--DPSPEKRAALAEEYGVRAATDNQEAAQEADVVVLAVKPQVMED 77 (267)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCCCCCCEEEEE--CCCHHHHHHHHHHHCCEEECCHHHHHHCCCEEEEEECHHHHHH
T ss_conf 9987999866-899999999999779894528997--7999999999997396785786988721999999728789999
Q ss_pred HHHHHCCC-CEEEEECCCCHHCC-------CC--CCCCCCCHHHHHHCCCCCCCEECCCCCCCCCCCCCCCHHHHCCC-C
Q ss_conf 99750456-51799614510011-------21--11236410111110333431212676432221112200110178-7
Q gi|254780307|r 80 MSPKIAAN-GCIVIDNSSAWRYD-------SD--VPLIVPEVNPQTISLASRKNIIANPNCSTIQLVVALKPLHDLAM-I 148 (335)
Q Consensus 80 ~~~~~~~~-g~~VIDlS~~~R~~-------~d--~p~~lPein~~~i~~~~~~~~VanPgC~at~~~l~L~PL~~~~~-i 148 (335)
+.+.+... +..||+.-+-...+ .+ +.=++|-+.-. +...- ..+..++++...-... +..|++..+ +
T Consensus 78 vl~~l~~~~~~~iISv~AGi~i~~l~~~l~~~~~ivR~MPN~~~~-v~~G~-t~i~~~~~~~~~~~~~-v~~lf~~~G~~ 154 (267)
T PRK11880 78 VLSELKGSLDKLVVSIAAGITLARLERALGADLPVVRAMPNTPAL-VGAGM-TALCANALVSEEQRAF-ALELLSAVGEV 154 (267)
T ss_pred HHHHHHHHHCCEEEEECCCCCHHHHHHHHCCCCHHHHCCCCHHHH-HCCCC-EEEECCCCCCHHHHHH-HHHHHHHCCCE
T ss_conf 999987650878999169999999998863687034208748999-70786-4662599999999999-99999725867
Q ss_pred CC----EEEEECCCCCCCCCCCC
Q ss_conf 41----14652152211232110
Q gi|254780307|r 149 KR----VVVTTYQSVSGAGKKGI 167 (335)
Q Consensus 149 ~~----v~v~s~~g~SGaG~~~~ 167 (335)
.+ -.+++.+++||.|=..+
T Consensus 155 ~~v~~E~~~d~~TalsGsGPAy~ 177 (267)
T PRK11880 155 VWVDDESQMDAVTAVSGSGPAYV 177 (267)
T ss_pred EEECCHHCCCHHHHHHCCCHHHH
T ss_conf 99884210221134517717999
No 52
>PRK11579 putative oxidoreductase; Provisional
Probab=97.81 E-value=5.2e-05 Score=49.65 Aligned_cols=87 Identities=18% Similarity=0.282 Sum_probs=60.4
Q ss_pred CEEEEEECCCCHHHHH-HHHHHHHCCCCEEEEEEEECCCCCCEEEECCCCEEEEEECCHH-HHCCCCEEEECCCHHHHHH
Q ss_conf 6179998166778999-9999974499807899997476587560027815899877943-6318847860687589999
Q gi|254780307|r 2 TFKVAVVGATGNVGRE-MLNIICERGFPISEVVALASERSAGTKVPFGKETIDVQDVKSY-DFSDTDICLMSAGHAVSSQ 79 (335)
Q Consensus 2 ~~kvaIiGatG~vG~e-l~~lL~~~~~p~~~l~~~~s~~~~G~~i~~~~~~~~~~~~~~~-~~~~~Divf~a~p~~~s~~ 79 (335)
++|+||||. |+.|+. -++.+. .+|.++|..+.+.+..--.-.+.+.. .+.+.++. +-.++|+|..|+|+..-.+
T Consensus 4 ~irvgiiG~-G~~~~~~h~~~~~--~~~~~~l~av~d~~~~~~~a~~~~~~-~~~~~~~ll~~~~id~V~i~tp~~~H~~ 79 (346)
T PRK11579 4 KIRVGLIGY-GYASKTFHAPLIA--GTPGLELAAVSSSDETKVKADWPTVT-VVSEPKHLFNDPNIDLIVIPTPNDTHFP 79 (346)
T ss_pred CCEEEEECC-CHHHHHHHHHHHH--CCCCEEEEEEECCCHHHHHCCCCCCC-EECCHHHHHCCCCCCEEEECCCCHHHHH
T ss_conf 875999936-2999999999996--29991999997989999950258995-3899999945999999999799678999
Q ss_pred HHHHHCCCCEEEE
Q ss_conf 9975045651799
Q gi|254780307|r 80 MSPKIAANGCIVI 92 (335)
Q Consensus 80 ~~~~~~~~g~~VI 92 (335)
++..++++|+.|+
T Consensus 80 ~~~~al~aGkhv~ 92 (346)
T PRK11579 80 LAKAALEAGKHVV 92 (346)
T ss_pred HHHHHHHCCCCEE
T ss_conf 9999998799489
No 53
>PRK08374 homoserine dehydrogenase; Provisional
Probab=97.81 E-value=9e-05 Score=48.19 Aligned_cols=96 Identities=19% Similarity=0.286 Sum_probs=61.4
Q ss_pred CCEEEEEECCCCHHHHHHHHHHHHCC-C--CEEEEEEEECCCCC---CEEE------EC-CCC-----EEEEEECCHHHH
Q ss_conf 96179998166778999999997449-9--80789999747658---7560------02-781-----589987794363
Q gi|254780307|r 1 MTFKVAVVGATGNVGREMLNIICERG-F--PISEVVALASERSA---GTKV------PF-GKE-----TIDVQDVKSYDF 62 (335)
Q Consensus 1 M~~kvaIiGatG~vG~el~~lL~~~~-~--p~~~l~~~~s~~~~---G~~i------~~-~~~-----~~~~~~~~~~~~ 62 (335)
|+|||+|+|. |.||+.++++|.++. . -.+++..+++++.. +..+ .. .++ +..+.+.+..+.
T Consensus 1 m~i~I~l~G~-G~VG~~~~~~L~~~~~~~g~~l~vv~i~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 79 (316)
T PRK08374 1 MEVKVSLFGF-GTVGRALAEILAEKSRVFGVELKVVSITDRSGTVWGDFDLLEAKEVKESTGKLSNIGDYEVYNFTPEEI 79 (316)
T ss_pred CEEEEEEECC-CHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCHHHHHHHHHCCCCCCCCCCHHHCCCCHHHH
T ss_conf 9512999933-889999999999718872986599999955676345655566555332025434455301204898998
Q ss_pred ---CCCCEEEECCCHHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf ---18847860687589999997504565179961451
Q gi|254780307|r 63 ---SDTDICLMSAGHAVSSQMSPKIAANGCIVIDNSSA 97 (335)
Q Consensus 63 ---~~~Divf~a~p~~~s~~~~~~~~~~g~~VIDlS~~ 97 (335)
.+.|+++-|++.+.+.++...+.++|+.||...-+
T Consensus 80 ~~~~~~dvvVd~t~~~~~~~~~~~al~~G~hVVTANK~ 117 (316)
T PRK08374 80 VEEVDPDIVVDVSSWDEAHEWYLTALKEGKSVVTSNKP 117 (316)
T ss_pred HCCCCCCEEEECCCCHHHHHHHHHHHHCCCCEECCCHH
T ss_conf 34889998998799969999999999889929978869
No 54
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=97.78 E-value=8.2e-05 Score=48.46 Aligned_cols=94 Identities=21% Similarity=0.300 Sum_probs=61.8
Q ss_pred CCEEEEEECCCCHHHHHHHHHHHHCCCCEEEEEEEECCCCCCEEE---ECCCCEEEEEECCHHHHCCCCEEEECCCHHHH
Q ss_conf 961799981667789999999974499807899997476587560---02781589987794363188478606875899
Q gi|254780307|r 1 MTFKVAVVGATGNVGREMLNIICERGFPISEVVALASERSAGTKV---PFGKETIDVQDVKSYDFSDTDICLMSAGHAVS 77 (335)
Q Consensus 1 M~~kvaIiGatG~vG~el~~lL~~~~~p~~~l~~~~s~~~~G~~i---~~~~~~~~~~~~~~~~~~~~Divf~a~p~~~s 77 (335)
|.++|+|+| .|..|+-+.+-|.++++. ..+ +..+.+.+... ..+..+-...+.......+.|+||+|.|-..+
T Consensus 2 ~~~~v~IvG-~GliG~s~a~~l~~~g~~-v~i--~g~d~~~~~~~~a~~lgv~d~~~~~~~~~~~~~aDlVivavPi~~~ 77 (279)
T COG0287 2 ASMKVGIVG-LGLMGGSLARALKEAGLV-VRI--IGRDRSAATLKAALELGVIDELTVAGLAEAAAEADLVIVAVPIEAT 77 (279)
T ss_pred CCCEEEEEC-CCHHHHHHHHHHHHCCCE-EEE--ECCCCCHHHHHHHHHCCCCHHHCCCHHHHHCCCCCEEEEECCHHHH
T ss_conf 864899987-746779999999976984-799--7247746778776635853010011555413569989995778899
Q ss_pred HHHHHHHC---CCCEEEEECCCCH
Q ss_conf 99997504---5651799614510
Q gi|254780307|r 78 SQMSPKIA---ANGCIVIDNSSAW 98 (335)
Q Consensus 78 ~~~~~~~~---~~g~~VIDlS~~~ 98 (335)
.++.+++. +.|+.|.|.+|.=
T Consensus 78 ~~~l~~l~~~l~~g~iv~Dv~S~K 101 (279)
T COG0287 78 EEVLKELAPHLKKGAIVTDVGSVK 101 (279)
T ss_pred HHHHHHHCCCCCCCCEEECCCCHH
T ss_conf 999998630379998897364201
No 55
>PRK06270 homoserine dehydrogenase; Provisional
Probab=97.76 E-value=8.6e-05 Score=48.33 Aligned_cols=95 Identities=19% Similarity=0.294 Sum_probs=59.7
Q ss_pred CCEEEEEECCCCHHHHHHHHHHHHCCC-------CEEEEEEEECCCC-----CCEEEE----CCCC-------EEEEEEC
Q ss_conf 961799981667789999999974499-------8078999974765-----875600----2781-------5899877
Q gi|254780307|r 1 MTFKVAVVGATGNVGREMLNIICERGF-------PISEVVALASERS-----AGTKVP----FGKE-------TIDVQDV 57 (335)
Q Consensus 1 M~~kvaIiGatG~vG~el~~lL~~~~~-------p~~~l~~~~s~~~-----~G~~i~----~~~~-------~~~~~~~ 57 (335)
|++||+|+|. |.||+.++++|.++.. -.+++..++.++. .|-.+. ...+ .......
T Consensus 1 m~i~I~l~G~-G~VG~~~~~~l~~~~~~l~~~~g~~l~v~~i~~s~~~~~~~~gid~~~~~~~~~~~~~~~~~~~~~~~~ 79 (342)
T PRK06270 1 MEMKIALVGF-GGVGQGLAELLAMKNEYLKKEYGLDLKVVAIADSSGAAIDPNGLDLELALKVKEETGKLADYPEGGGEI 79 (342)
T ss_pred CCCCEEEECC-CHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCC
T ss_conf 9631999876-889999999999879999998499789999991654335766789899987664116500032000127
Q ss_pred CHHH---HCCCCEEEECCCH-----HHHHHHHHHHCCCCEEEEECCC
Q ss_conf 9436---3188478606875-----8999999750456517996145
Q gi|254780307|r 58 KSYD---FSDTDICLMSAGH-----AVSSQMSPKIAANGCIVIDNSS 96 (335)
Q Consensus 58 ~~~~---~~~~Divf~a~p~-----~~s~~~~~~~~~~g~~VIDlS~ 96 (335)
+..+ ..++|+++-|+|. +.+.++...+.++|+.||-..-
T Consensus 80 ~~~~~~~~~~~dvvve~t~~~~~~~e~a~~~~~~aL~~G~~VVTANK 126 (342)
T PRK06270 80 DGLEVIKSAEADVLVEATPTNIETGEPALSHCRKALERGKHVVTSNK 126 (342)
T ss_pred CHHHHHCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHCCCEEECCCC
T ss_conf 89998427799989993044677748899999999977994999887
No 56
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=97.74 E-value=7e-05 Score=48.86 Aligned_cols=134 Identities=22% Similarity=0.376 Sum_probs=70.8
Q ss_pred EEEEEECCCCHHHHHHHHHHHHCCCCEEEEEEEECCCC---CCEEEECCCCEEEEEECCH--HHHCCCCEEEECCCHHHH
Q ss_conf 17999816677899999999744998078999974765---8756002781589987794--363188478606875899
Q gi|254780307|r 3 FKVAVVGATGNVGREMLNIICERGFPISEVVALASERS---AGTKVPFGKETIDVQDVKS--YDFSDTDICLMSAGHAVS 77 (335)
Q Consensus 3 ~kvaIiGatG~vG~el~~lL~~~~~p~~~l~~~~s~~~---~G~~i~~~~~~~~~~~~~~--~~~~~~Divf~a~p~~~s 77 (335)
|||||+||||-+|.++++-...|+| |++++.-+.+ +-+.+....++ +-|++. .++.+.|+|+.|-+...+
T Consensus 1 mKIaiIgAsG~~Gs~i~~EA~~RGH---eVTAivRn~~K~~~~~~~~i~q~D--ifd~~~~a~~l~g~DaVIsA~~~~~~ 75 (211)
T COG2910 1 MKIAIIGASGKAGSRILKEALKRGH---EVTAIVRNASKLAARQGVTILQKD--IFDLTSLASDLAGHDAVISAFGAGAS 75 (211)
T ss_pred CEEEEEECCCHHHHHHHHHHHHCCC---EEEEEEECHHHCCCCCCCEEECCC--CCCHHHHHHHHCCCCEEEEECCCCCC
T ss_conf 9078995374567999999986798---048998076766522353020002--22745667663587669972157888
Q ss_pred H----------HHHHHHCCCCE---EEEECCCCHHCCCCCCCC-CCCHHHHHHCCCCCCCEECCCCCCCCCCCCCCCHHH
Q ss_conf 9----------99975045651---799614510011211123-641011111033343121267643222111220011
Q gi|254780307|r 78 S----------QMSPKIAANGC---IVIDNSSAWRYDSDVPLI-VPEVNPQTISLASRKNIIANPNCSTIQLVVALKPLH 143 (335)
Q Consensus 78 ~----------~~~~~~~~~g~---~VIDlS~~~R~~~d~p~~-lPein~~~i~~~~~~~~VanPgC~at~~~l~L~PL~ 143 (335)
. .+...+..+|. .|+--.+.+-+++++-++ .|+...+... .+.+..=.|.-|.
T Consensus 76 ~~~~~~~k~~~~li~~l~~agv~RllVVGGAGSL~id~g~rLvD~p~fP~ey~~-------------~A~~~ae~L~~Lr 142 (211)
T COG2910 76 DNDELHSKSIEALIEALKGAGVPRLLVVGGAGSLEIDEGTRLVDTPDFPAEYKP-------------EALAQAEFLDSLR 142 (211)
T ss_pred CHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCEEECCCCEEECCCCCCHHHHH-------------HHHHHHHHHHHHH
T ss_conf 715778889999999986159705999847420587688455058998566779-------------9987789999986
Q ss_pred HCCCCCCEEEE
Q ss_conf 01787411465
Q gi|254780307|r 144 DLAMIKRVVVT 154 (335)
Q Consensus 144 ~~~~i~~v~v~ 154 (335)
....++|..++
T Consensus 143 ~~~~l~WTfvS 153 (211)
T COG2910 143 AEKSLDWTFVS 153 (211)
T ss_pred HCCCCCEEEEC
T ss_conf 35676459967
No 57
>pfam03435 Saccharop_dh Saccharopine dehydrogenase. This family comprised of three structural domains that can not be separated in the linear sequence. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase. The saccharopine dehydrogenase can also function as a saccharopine reductase.
Probab=97.74 E-value=8.9e-05 Score=48.24 Aligned_cols=116 Identities=16% Similarity=0.156 Sum_probs=70.1
Q ss_pred EEEECCCCHHHHHHHHHHHHCCCCEEEEEEEECCCCCCEEEE--CCCCEEEEE--ECCH-H----HHCCCCEEEECCCHH
Q ss_conf 999816677899999999744998078999974765875600--278158998--7794-3----631884786068758
Q gi|254780307|r 5 VAVVGATGNVGREMLNIICERGFPISEVVALASERSAGTKVP--FGKETIDVQ--DVKS-Y----DFSDTDICLMSAGHA 75 (335)
Q Consensus 5 vaIiGatG~vG~el~~lL~~~~~p~~~l~~~~s~~~~G~~i~--~~~~~~~~~--~~~~-~----~~~~~Divf~a~p~~ 75 (335)
|-|+|+ |.||+.+++.|.+|. ...++...+-+...-+.+. ......... |+.+ . -+++.|+|+.|+|..
T Consensus 1 IlvlGa-G~vG~~~~~~L~~~~-~~~~i~vad~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~diVv~~~p~~ 78 (384)
T pfam03435 1 VLIIGA-GGVGQGVAPLLARHG-DVDEITVADRSLEKAQALAAPKLGLRFIAIAVDADNYEALAALLKEGDLVINLAPPF 78 (384)
T ss_pred CEEECC-CHHHHHHHHHHHHCC-CCCEEEEEECCHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHCCCEEEECCCHH
T ss_conf 989897-787999999997289-988699998988998987752369853899957789999999871289999998434
Q ss_pred HHHHHHHHHCCCCEEEEECCCCHHCCCCCCCCCCCHHHHHHCCCCCCCEECCCCCCCC
Q ss_conf 9999997504565179961451001121112364101111103334312126764322
Q gi|254780307|r 76 VSSQMSPKIAANGCIVIDNSSAWRYDSDVPLIVPEVNPQTISLASRKNIIANPNCSTI 133 (335)
Q Consensus 76 ~s~~~~~~~~~~g~~VIDlS~~~R~~~d~p~~lPein~~~i~~~~~~~~VanPgC~at 133 (335)
....+++...++|+..||.|-.. +++. +.-+.+++.++.+.++|=..
T Consensus 79 ~~~~i~~~c~~~g~~yvd~s~~~----------~~~~-~l~~~a~~ag~~~~~~~G~~ 125 (384)
T pfam03435 79 LSLTVLKACIETGVHYVDTSYLR----------EAQL-ALHEKAKEAGVTAVLGCGFD 125 (384)
T ss_pred HCHHHHHHHHHCCCCEEECCCCH----------HHHH-HHHHHHHHCCCEEEECCCCC
T ss_conf 16999999997399757534366----------8899-99997765696899678889
No 58
>pfam05368 NmrA NmrA-like family. NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.
Probab=97.70 E-value=0.00021 Score=45.96 Aligned_cols=89 Identities=19% Similarity=0.276 Sum_probs=53.8
Q ss_pred EEEECCCCHHHHHHHHHHHHCCCCEEEEEEEECC-CC-CCEEEECCCCEEEEEECCHH-----HHCCCCEEEECCCHHH-
Q ss_conf 9998166778999999997449980789999747-65-87560027815899877943-----6318847860687589-
Q gi|254780307|r 5 VAVVGATGNVGREMLNIICERGFPISEVVALASE-RS-AGTKVPFGKETIDVQDVKSY-----DFSDTDICLMSAGHAV- 76 (335)
Q Consensus 5 vaIiGatG~vG~el~~lL~~~~~p~~~l~~~~s~-~~-~G~~i~~~~~~~~~~~~~~~-----~~~~~Divf~a~p~~~- 76 (335)
|.|.||||++|+.+++.|.+++|+ +..+.-+ ++ .-+.+...+-+...-|+++. .+.++|.||+++|...
T Consensus 1 IlV~GatG~iG~~vv~~L~~~g~~---Vr~l~R~~~~~~~~~l~~~gve~v~gD~~d~~sl~~al~gvd~v~~~~~~~~~ 77 (232)
T pfam05368 1 ILVFGATGYQGGSVVRASLKAGHP---VRALVRDPKSELAKSLKAAGVELVEGDLDDHESLVEALKGVDVVFSVTGFWLS 77 (232)
T ss_pred EEEECCCHHHHHHHHHHHHHCCCC---EEEEECCCCHHHHHHHHHCCCEEEEECCCCHHHHHHHHCCCCEEEEECCCCCC
T ss_conf 099896828999999999858993---89997187366566664179889990688878999996799889991588741
Q ss_pred -----HHHHHHHHCCCCEEEEECCC
Q ss_conf -----99999750456517996145
Q gi|254780307|r 77 -----SSQMSPKIAANGCIVIDNSS 96 (335)
Q Consensus 77 -----s~~~~~~~~~~g~~VIDlS~ 96 (335)
...+++.+.++|++-|=.|+
T Consensus 78 ~~~~~~~~~~~AA~~aGVk~~V~ss 102 (232)
T pfam05368 78 KEIEDGKKLADAAKEAGVKHFIPSE 102 (232)
T ss_pred HHHHHHHHHHHHHHHCCCCCEEEEE
T ss_conf 7799999999999973998345555
No 59
>pfam01113 DapB_N Dihydrodipicolinate reductase, N-terminus. Dihydrodipicolinate reductase (DapB) reduces the alpha,beta-unsaturated cyclic imine, dihydro-dipicolinate. This reaction is the second committed step in the biosynthesis of L-lysine and its precursor meso-diaminopimelate, which are critical for both protein and cell wall biosynthesis. The N-terminal domain of DapB binds the dinucleotide NADPH.
Probab=97.69 E-value=0.00036 Score=44.56 Aligned_cols=92 Identities=26% Similarity=0.315 Sum_probs=61.8
Q ss_pred EEEEEECCCCHHHHHHHHHHHHCCCCEEEEEEEECCCC---CCEEEEC--CCCEEEEEECCHHHHCCCCEEEECCCHHHH
Q ss_conf 17999816677899999999744998078999974765---8756002--781589987794363188478606875899
Q gi|254780307|r 3 FKVAVVGATGNVGREMLNIICERGFPISEVVALASERS---AGTKVPF--GKETIDVQDVKSYDFSDTDICLMSAGHAVS 77 (335)
Q Consensus 3 ~kvaIiGatG~vG~el~~lL~~~~~p~~~l~~~~s~~~---~G~~i~~--~~~~~~~~~~~~~~~~~~Divf~a~p~~~s 77 (335)
|||+|.|++|..|+++++++.++ +.++|+....++. .|+.+.. ......+.+-....+.++|+++=.+-.+.+
T Consensus 1 ikV~i~Ga~GrMG~~i~~~i~~~--~~~~lv~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~DVvIDFS~p~~~ 78 (122)
T pfam01113 1 IKVAVVGASGRMGRELIKAILEA--PDFELVAAVDRPGSSLLGSDAGELAGPLGVPVTDDLEEVLADADVLIDFTTPEAT 78 (122)
T ss_pred CEEEEECCCCHHHHHHHHHHHHC--CCCEEEEEEECCCCCCCCCCCCCCCCCCCCEECCCHHHHCCCCCEEEEECCHHHH
T ss_conf 98999889887899999999858--9968999994389612254310014678711124477751578889990687899
Q ss_pred HHHHHHHCCCCEEEEECCC
Q ss_conf 9999750456517996145
Q gi|254780307|r 78 SQMSPKIAANGCIVIDNSS 96 (335)
Q Consensus 78 ~~~~~~~~~~g~~VIDlS~ 96 (335)
.+.++.+.+.|+.+|--+.
T Consensus 79 ~~~~~~~~~~~~~~ViGTT 97 (122)
T pfam01113 79 LENLELALKHGKPLVIGTT 97 (122)
T ss_pred HHHHHHHHHCCCCEEEECC
T ss_conf 9999999967998899899
No 60
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=97.62 E-value=0.00022 Score=45.89 Aligned_cols=136 Identities=19% Similarity=0.218 Sum_probs=83.5
Q ss_pred EEEEEECCCCHHHHHHHHHHHHCCCCEEEEEEEECCCCCCEEEE-C---CCCEEEEEECCHH-----HHCCCCEEEECCC
Q ss_conf 17999816677899999999744998078999974765875600-2---7815899877943-----6318847860687
Q gi|254780307|r 3 FKVAVVGATGNVGREMLNIICERGFPISEVVALASERSAGTKVP-F---GKETIDVQDVKSY-----DFSDTDICLMSAG 73 (335)
Q Consensus 3 ~kvaIiGatG~vG~el~~lL~~~~~p~~~l~~~~s~~~~G~~i~-~---~~~~~~~~~~~~~-----~~~~~Divf~a~p 73 (335)
+||-|+|+ |.||+...+.|..+.. .++...+-+...-.++. . +-+.+. -|+.+. -+++.|+|+.|+|
T Consensus 2 ~~ilviGa-G~Vg~~va~~la~~~d--~~V~iAdRs~~~~~~i~~~~~~~v~~~~-vD~~d~~al~~li~~~d~VIn~~p 77 (389)
T COG1748 2 MKILVIGA-GGVGSVVAHKLAQNGD--GEVTIADRSKEKCARIAELIGGKVEALQ-VDAADVDALVALIKDFDLVINAAP 77 (389)
T ss_pred CCEEEECC-CHHHHHHHHHHHHCCC--CEEEEEECCHHHHHHHHHHCCCCCEEEE-ECCCCHHHHHHHHHCCCEEEEECC
T ss_conf 72899898-6667999999985789--6299984888899998753346631699-425675889998725778999287
Q ss_pred HHHHHHHHHHHCCCCEEEEECCCCHHCCCCCCCCCCCHHHHHHCCCCCCCEECCCCC-CCCCCCCCCCH--HHHCC-CCC
Q ss_conf 589999997504565179961451001121112364101111103334312126764-32221112200--11017-874
Q gi|254780307|r 74 HAVSSQMSPKIAANGCIVIDNSSAWRYDSDVPLIVPEVNPQTISLASRKNIIANPNC-STIQLVVALKP--LHDLA-MIK 149 (335)
Q Consensus 74 ~~~s~~~~~~~~~~g~~VIDlS~~~R~~~d~p~~lPein~~~i~~~~~~~~VanPgC-~at~~~l~L~P--L~~~~-~i~ 149 (335)
..+...+.+.+.+.|+.++|.|-.- +.+ ++.-+.+++.++.+.|+| .+-++.-++.. ..+.+ .++
T Consensus 78 ~~~~~~i~ka~i~~gv~yvDts~~~---~~~--------~~~~~~a~~Agit~v~~~G~dPGi~nv~a~~a~~~~~~~i~ 146 (389)
T COG1748 78 PFVDLTILKACIKTGVDYVDTSYYE---EPP--------WKLDEEAKKAGITAVLGCGFDPGITNVLAAYAAKELFDEIE 146 (389)
T ss_pred CHHHHHHHHHHHHHCCCEEECCCCC---CHH--------HHHHHHHHHCCCEEECCCCCCCCHHHHHHHHHHHHHHCCCC
T ss_conf 0542999999998599889754677---506--------56548988749079716676864579999999998616564
Q ss_pred CEEE
Q ss_conf 1146
Q gi|254780307|r 150 RVVV 153 (335)
Q Consensus 150 ~v~v 153 (335)
++.+
T Consensus 147 si~i 150 (389)
T COG1748 147 SIDI 150 (389)
T ss_pred EEEE
T ss_conf 8999
No 61
>COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism]
Probab=97.58 E-value=0.0005 Score=43.66 Aligned_cols=93 Identities=26% Similarity=0.277 Sum_probs=58.4
Q ss_pred CCEEEEEECCCCHHHHHHHHHHHHCCCCEEEEEEEE-CC--CCCCEEEE----CCCCEEEEEECCHHHHCCCCEEEECCC
Q ss_conf 961799981667789999999974499807899997-47--65875600----278158998779436318847860687
Q gi|254780307|r 1 MTFKVAVVGATGNVGREMLNIICERGFPISEVVALA-SE--RSAGTKVP----FGKETIDVQDVKSYDFSDTDICLMSAG 73 (335)
Q Consensus 1 M~~kvaIiGatG~vG~el~~lL~~~~~p~~~l~~~~-s~--~~~G~~i~----~~~~~~~~~~~~~~~~~~~Divf~a~p 73 (335)
|.|||+|+|++|..|+++++++.+. |..+|...- .+ .+.|+... .+.-...+.+-......+.|+++=.+-
T Consensus 1 ~~iki~V~Ga~GRMG~~ii~~v~~~--~~~~L~aa~~~~~~~~~g~d~ge~~g~~~~gv~v~~~~~~~~~~~DV~IDFT~ 78 (266)
T COG0289 1 SMIKVAVAGASGRMGRTLIRAVLEA--PDLELVAAFDRPGSLSLGSDAGELAGLGLLGVPVTDDLLLVKADADVLIDFTT 78 (266)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHCC--CCCEEEEEEECCCCCCCCCCHHHHCCCCCCCCEEECCHHHCCCCCCEEEECCC
T ss_conf 9736999757872789999998528--99469999813784223431123214465573320634330468988998998
Q ss_pred HHHHHHHHHHHCCCCEE-EEECC
Q ss_conf 58999999750456517-99614
Q gi|254780307|r 74 HAVSSQMSPKIAANGCI-VIDNS 95 (335)
Q Consensus 74 ~~~s~~~~~~~~~~g~~-VIDlS 95 (335)
.+.+.+..+.+.+.+.. ||--.
T Consensus 79 P~~~~~~l~~~~~~~~~lVIGTT 101 (266)
T COG0289 79 PEATLENLEFALEHGKPLVIGTT 101 (266)
T ss_pred CHHHHHHHHHHHHCCCCEEEECC
T ss_conf 25469999999976998699799
No 62
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=97.58 E-value=0.00024 Score=45.61 Aligned_cols=92 Identities=21% Similarity=0.302 Sum_probs=59.2
Q ss_pred EEEEECCCCHHHHHHHHHHHHCCCCEEEEEEEECCCCCCE-EEECCCCEEEEEECCHHHHCCCCEEEECCCHHHHHHHHH
Q ss_conf 7999816677899999999744998078999974765875-600278158998779436318847860687589999997
Q gi|254780307|r 4 KVAVVGATGNVGREMLNIICERGFPISEVVALASERSAGT-KVPFGKETIDVQDVKSYDFSDTDICLMSAGHAVSSQMSP 82 (335)
Q Consensus 4 kvaIiGatG~vG~el~~lL~~~~~p~~~l~~~~s~~~~G~-~i~~~~~~~~~~~~~~~~~~~~Divf~a~p~~~s~~~~~ 82 (335)
||+|+|. |+.|.-|.+-|.+++ +..++..+..+...-+ ....+--+-...+ ..+...++|+||+|+|-....++.+
T Consensus 8 ~I~IiGl-GLIGgSlA~alk~~~-~~~~I~g~d~~~~~l~~A~~~g~id~~~~~-~~e~~~~~DlIilatPv~~~~~vl~ 84 (307)
T PRK07502 8 RVALIGL-GLIGSSLARAIRRQG-LAGEIVGAARSAETRARARELGLGDRVTTS-AAEAVKGADLVILCVPVGASGAVAA 84 (307)
T ss_pred EEEEEEE-CHHHHHHHHHHHHCC-CCCEEEEEECCHHHHHHHHHCCCCCHHCCC-HHHHHCCCCEEEEECCHHHHHHHHH
T ss_conf 6899927-879999999998549-985799984999999999986997511277-7664045897999178999999999
Q ss_pred HH---CCCCEEEEECCCCH
Q ss_conf 50---45651799614510
Q gi|254780307|r 83 KI---AANGCIVIDNSSAW 98 (335)
Q Consensus 83 ~~---~~~g~~VIDlS~~~ 98 (335)
.+ .+.++.|.|.+|.=
T Consensus 85 ~l~~~l~~~~ivTDvgSvK 103 (307)
T PRK07502 85 EIAPHLKPGAIVTDVGSVK 103 (307)
T ss_pred HHHHHCCCCCEEEECCCCH
T ss_conf 9985558996899663211
No 63
>PRK06349 homoserine dehydrogenase; Provisional
Probab=97.54 E-value=0.0002 Score=46.04 Aligned_cols=96 Identities=20% Similarity=0.204 Sum_probs=62.9
Q ss_pred CC-EEEEEECCCCHHHHHHHHHHHHCCC-------CEEEEEEEECCCCCCEEEECCCCEEEE-EECCHHH-HCCCCEEEE
Q ss_conf 96-1799981667789999999974499-------807899997476587560027815899-8779436-318847860
Q gi|254780307|r 1 MT-FKVAVVGATGNVGREMLNIICERGF-------PISEVVALASERSAGTKVPFGKETIDV-QDVKSYD-FSDTDICLM 70 (335)
Q Consensus 1 M~-~kvaIiGatG~vG~el~~lL~~~~~-------p~~~l~~~~s~~~~G~~i~~~~~~~~~-~~~~~~~-~~~~Divf~ 70 (335)
|+ |||||+|. |.||+.+.++|.++.. ..+++..+...+ ..+.-.+......+ .|.++.- -.++|+|+-
T Consensus 1 M~~ikIgl~G~-GtVG~gv~~il~~~~~~i~~~~g~~~~i~~i~~r~-~~k~r~~~~~~~~~t~d~~~i~~d~~idivVE 78 (432)
T PRK06349 1 MKPLKVGLLGL-GTVGSGVVRILEENAEEIAARAGRPIEIKKVAVRD-LEKDRGVDLSGYLLTTDPEELVNDPDIDIVVE 78 (432)
T ss_pred CCEEEEEEECC-CCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECC-CCCCCCCCCCCCEEECCHHHHHCCCCCCEEEE
T ss_conf 95538999987-80699999999980999999869976999999689-75355899985555479999943899989999
Q ss_pred CCCH-HHHHHHHHHHCCCCEEEEECCCCH
Q ss_conf 6875-899999975045651799614510
Q gi|254780307|r 71 SAGH-AVSSQMSPKIAANGCIVIDNSSAW 98 (335)
Q Consensus 71 a~p~-~~s~~~~~~~~~~g~~VIDlS~~~ 98 (335)
..+. +.+.+++..+.++|+.||-..-+.
T Consensus 79 liGG~~~A~~~i~~AL~~GkhVVTANKal 107 (432)
T PRK06349 79 LMGGIEPARELILAALEAGKHVVTANKAL 107 (432)
T ss_pred ECCCCHHHHHHHHHHHHCCCCEEECCHHH
T ss_conf 66995079999999998599689258799
No 64
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=97.54 E-value=8.2e-05 Score=48.43 Aligned_cols=91 Identities=20% Similarity=0.242 Sum_probs=55.5
Q ss_pred CEEEEEECCCCHHHHHHHHHHHHCCCCEEEEEEEECCCCCCEEEECCCCEEEEEECCHHHHCCCCEEEECCCHHHHH-HH
Q ss_conf 61799981667789999999974499807899997476587560027815899877943631884786068758999-99
Q gi|254780307|r 2 TFKVAVVGATGNVGREMLNIICERGFPISEVVALASERSAGTKVPFGKETIDVQDVKSYDFSDTDICLMSAGHAVSS-QM 80 (335)
Q Consensus 2 ~~kvaIiGatG~vG~el~~lL~~~~~p~~~l~~~~s~~~~G~~i~~~~~~~~~~~~~~~~~~~~Divf~a~p~~~s~-~~ 80 (335)
+|||++||- |.-|..+.+.|.+++|+ +..+.-..+.-+.+...+ ....+--.+...++|+||+|+|++... ++
T Consensus 1 ~MkIgfIGl-G~MG~~ma~~L~~~G~~---v~v~dr~~~~~~~l~~~G--a~~~~s~~e~~~~~dvvi~~l~~~~~v~~v 74 (295)
T PRK11559 1 TMKVGFIGL-GIMGKPMSKNLLKAGYS---LVVYDRNPEAIADVIAAG--AETASTAKAIAEQCDVIITMLPNSPHVKEV 74 (295)
T ss_pred CCEEEEECC-HHHHHHHHHHHHHCCCE---EEEEECCHHHHHHHHHCC--CCCCCCHHHHHHCCCEEEEECCCCCCHHHH
T ss_conf 978999840-57699999999978995---899929999999999859--920399999984388789966898107766
Q ss_pred HH------HHCCCCEEEEECCCCH
Q ss_conf 97------5045651799614510
Q gi|254780307|r 81 SP------KIAANGCIVIDNSSAW 98 (335)
Q Consensus 81 ~~------~~~~~g~~VIDlS~~~ 98 (335)
.. .....|..|||+|...
T Consensus 75 ~~g~~gi~~~~~~g~iiid~sT~~ 98 (295)
T PRK11559 75 ALGENGIIEGAKPGTVLIDMSSIA 98 (295)
T ss_pred HHCCCCCHHCCCCCCEEEECCCCC
T ss_conf 307766011389998899899999
No 65
>pfam03446 NAD_binding_2 NAD binding domain of 6-phosphogluconate dehydrogenase. The NAD binding domain of 6-phosphogluconate dehydrogenase adopts a Rossmann fold.
Probab=97.52 E-value=0.00013 Score=47.22 Aligned_cols=91 Identities=16% Similarity=0.195 Sum_probs=55.7
Q ss_pred CCEEEEEECCCCHHHHHHHHHHHHCCCCEEEEEEEECCCCCCEEEECCCCEEEEEECCHHHHCCCCEEEECCCHHHHHH-
Q ss_conf 9617999816677899999999744998078999974765875600278158998779436318847860687589999-
Q gi|254780307|r 1 MTFKVAVVGATGNVGREMLNIICERGFPISEVVALASERSAGTKVPFGKETIDVQDVKSYDFSDTDICLMSAGHAVSSQ- 79 (335)
Q Consensus 1 M~~kvaIiGatG~vG~el~~lL~~~~~p~~~l~~~~s~~~~G~~i~~~~~~~~~~~~~~~~~~~~Divf~a~p~~~s~~- 79 (335)
|+ ||++||- |.-|..+.+.|.+++|+ +..+.-+.+.-+.+. .+.....+--.+-..++|++|+|+|++...+
T Consensus 1 M~-~Ig~IGl-G~MG~~ma~~L~~~g~~---v~v~d~~~~~~~~~~--~~g~~~~~s~~e~~~~~dvIi~~l~~~~~v~~ 73 (163)
T pfam03446 1 MA-KIGFIGL-GVMGSPMALNLLKAGYT---VTVYNRTPEKVEELV--AEGAVAAASPAEAAASADVVITMVPAGAAVDA 73 (163)
T ss_pred CC-EEEEEEE-HHHHHHHHHHHHHCCCE---EEEEECCHHHHHHHH--HCCCEECCCHHHHHHCCCEEEEECCCHHHHHE
T ss_conf 98-8999836-79899999999977996---999979788779999--83995539999998619999992587145402
Q ss_pred HHH------HHCCCCEEEEECCCCH
Q ss_conf 997------5045651799614510
Q gi|254780307|r 80 MSP------KIAANGCIVIDNSSAW 98 (335)
Q Consensus 80 ~~~------~~~~~g~~VIDlS~~~ 98 (335)
+.. .....|..|||+|...
T Consensus 74 V~~~~~gl~~~~~~g~iiid~sT~~ 98 (163)
T pfam03446 74 VIFGEDGLLPGLKPGDIIIDGSTIS 98 (163)
T ss_pred EECCCCCHHHHCCCCCEEEECCCCC
T ss_conf 2026313323135898898679899
No 66
>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family. This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.
Probab=97.50 E-value=0.00083 Score=42.36 Aligned_cols=90 Identities=12% Similarity=0.179 Sum_probs=51.7
Q ss_pred EEEECCCCHHHHHHHHHHHHCCCCEEEEEEEECCCCCCEEEECCCCEEEEEECCHH--HH-------CCCCEEEECCCHH
Q ss_conf 99981667789999999974499807899997476587560027815899877943--63-------1884786068758
Q gi|254780307|r 5 VAVVGATGNVGREMLNIICERGFPISEVVALASERSAGTKVPFGKETIDVQDVKSY--DF-------SDTDICLMSAGHA 75 (335)
Q Consensus 5 vaIiGatG~vG~el~~lL~~~~~p~~~l~~~~s~~~~G~~i~~~~~~~~~~~~~~~--~~-------~~~Divf~a~p~~ 75 (335)
|.|.||||.+|+.+++.|.++++|. ..++.+...........-...+.|.+.. .+ .++|.+|+..|..
T Consensus 2 IlVtGATG~iG~~v~~~L~~~g~~v---~~~~R~~~~~~~~~~~~v~~d~~d~~~~~~a~~~~d~~~~~v~~v~l~~p~~ 78 (285)
T TIGR03649 2 ILLTGGTGKTASRIARLLQAASVPF---LVASRSSSSSAGPNEKHVKFDWLDEDTWDNPFSSDDGMEPEISAVYLVAPPI 78 (285)
T ss_pred EEEECCCCHHHHHHHHHHHHCCCCE---EEEECCHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCCC
T ss_conf 8999899818999999998689978---9995885664666675368644481148889763532312741899838998
Q ss_pred -----HHHHHHHHHCCCCE-EEEECCCC
Q ss_conf -----99999975045651-79961451
Q gi|254780307|r 76 -----VSSQMSPKIAANGC-IVIDNSSA 97 (335)
Q Consensus 76 -----~s~~~~~~~~~~g~-~VIDlS~~ 97 (335)
....++..+.++|. .||-+|+.
T Consensus 79 ~~~~~~~~~~i~aA~~aGV~~iV~lS~~ 106 (285)
T TIGR03649 79 PDLAPPMIKFIDFARSKGVRRFVLLSAS 106 (285)
T ss_pred CCHHHHHHHHHHHHHHCCCCEEEEEECC
T ss_conf 7767899999999998499889998303
No 67
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]
Probab=97.44 E-value=0.00026 Score=45.37 Aligned_cols=141 Identities=24% Similarity=0.353 Sum_probs=82.9
Q ss_pred EEEEEECCCCHHHHHHHHHHHHCCCCEEEEEEEECCCCC-CEEE--ECCCCEEEEEECCHHHHCCCCEEEECCCHHHHHH
Q ss_conf 179998166778999999997449980789999747658-7560--0278158998779436318847860687589999
Q gi|254780307|r 3 FKVAVVGATGNVGREMLNIICERGFPISEVVALASERSA-GTKV--PFGKETIDVQDVKSYDFSDTDICLMSAGHAVSSQ 79 (335)
Q Consensus 3 ~kvaIiGatG~vG~el~~lL~~~~~p~~~l~~~~s~~~~-G~~i--~~~~~~~~~~~~~~~~~~~~Divf~a~p~~~s~~ 79 (335)
|+|+|+|. |.+|..+++++.+-. -.+|+.++...... -+.+ ++.... ..++++.- .++|++.-|+.+++-++
T Consensus 1 l~vgiVGc-GaIG~~l~e~v~~~~-~~~e~v~v~D~~~ek~~~~~~~~~~~~--~s~ide~~-~~~DlvVEaAS~~Av~e 75 (255)
T COG1712 1 LKVGIVGC-GAIGKFLLELVRDGR-VDFELVAVYDRDEEKAKELEASVGRRC--VSDIDELI-AEVDLVVEAASPEAVRE 75 (255)
T ss_pred CEEEEEEC-CHHHHHHHHHHHCCC-CCEEEEEEECCCHHHHHHHHHHCCCCC--CCCHHHHH-HCCCEEEEECCHHHHHH
T ss_conf 95789823-378899999986688-643699994488788888886038876--35677773-02442543078899999
Q ss_pred HHHHHCCCCEEEEECC-CCHHCCCCCCCCCCCHHHHHH-CCCCCCCEECCCCCC---CCCCCCCCCHHH--HCCCCCCEE
Q ss_conf 9975045651799614-510011211123641011111-033343121267643---222111220011--017874114
Q gi|254780307|r 80 MSPKIAANGCIVIDNS-SAWRYDSDVPLIVPEVNPQTI-SLASRKNIIANPNCS---TIQLVVALKPLH--DLAMIKRVV 152 (335)
Q Consensus 80 ~~~~~~~~g~~VIDlS-~~~R~~~d~p~~lPein~~~i-~~~~~~~~VanPgC~---at~~~l~L~PL~--~~~~i~~v~ 152 (335)
+.++++++|+-+|=+| +++- |++ + ++.+ +.++ +.||+ +++.+-+|-.|. +.+.|++|.
T Consensus 76 ~~~~~L~~g~d~iV~SVGALa-d~~-------l-~erl~~lak------~~~~rv~~pSGAiGGlD~l~aar~g~i~~V~ 140 (255)
T COG1712 76 YVPKILKAGIDVIVMSVGALA-DEG-------L-RERLRELAK------CGGARVYLPSGAIGGLDALAAARVGGIEEVV 140 (255)
T ss_pred HHHHHHHCCCCEEEEECHHCC-CHH-------H-HHHHHHHHH------CCCCEEEECCCCCHHHHHHHHHHCCCEEEEE
T ss_conf 869999659988999512206-867-------9-999999985------3894799337640127888874327702799
Q ss_pred EEECCCCCCCC
Q ss_conf 65215221123
Q gi|254780307|r 153 VTTYQSVSGAG 163 (335)
Q Consensus 153 v~s~~g~SGaG 163 (335)
.+|--+...-|
T Consensus 141 lttrKpp~~lg 151 (255)
T COG1712 141 LTTRKPPAELG 151 (255)
T ss_pred EEEECCHHHHC
T ss_conf 97206847827
No 68
>PRK06545 prephenate dehydrogenase; Validated
Probab=97.38 E-value=0.00072 Score=42.73 Aligned_cols=92 Identities=21% Similarity=0.307 Sum_probs=58.9
Q ss_pred EEEEECCCCHHHHHHHHHHHHCCCCEEEEEEEECCCCC-CEEEECCCCEEEEEECCHHHHCCCCEEEECCCHHHHHHHHH
Q ss_conf 79998166778999999997449980789999747658-75600278158998779436318847860687589999997
Q gi|254780307|r 4 KVAVVGATGNVGREMLNIICERGFPISEVVALASERSA-GTKVPFGKETIDVQDVKSYDFSDTDICLMSAGHAVSSQMSP 82 (335)
Q Consensus 4 kvaIiGatG~vG~el~~lL~~~~~p~~~l~~~~s~~~~-G~~i~~~~~~~~~~~~~~~~~~~~Divf~a~p~~~s~~~~~ 82 (335)
+|+|+|- |++|.-|-+-|.+++ +..++.....+... -+....+--+-...++ .+...++|+||+|+|-....++.+
T Consensus 2 ~V~IiGl-GLIGgSlalalk~~g-~~~~i~~~d~~~~~l~~A~~~g~id~~~~~~-~~~~~~~DlVvlatPv~~~~~~l~ 78 (357)
T PRK06545 2 TVLIVGL-GLIGGSLALAIKAAG-PDVFIIGYDPSGAQLARALGFGVIDELAEDL-ARAAAEADLIVLAVPVDATAALLA 78 (357)
T ss_pred EEEEEEE-CHHHHHHHHHHHHCC-CCEEEEEECCCHHHHHHHHHCCCCCEECCCH-HHHCCCCCEEEECCCHHHHHHHHH
T ss_conf 7999977-878999999998549-9769999669999999998689977304887-671567999999499999999999
Q ss_pred HHC--CCCEEEEECCCCH
Q ss_conf 504--5651799614510
Q gi|254780307|r 83 KIA--ANGCIVIDNSSAW 98 (335)
Q Consensus 83 ~~~--~~g~~VIDlS~~~ 98 (335)
++. ..++.|.|.+|-=
T Consensus 79 ~l~~l~~~~ivTDVgSvK 96 (357)
T PRK06545 79 ELADLAPGVIVTDVGSVK 96 (357)
T ss_pred HHHHCCCCCEEEECCCCH
T ss_conf 987238997899751007
No 69
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=97.37 E-value=0.00024 Score=45.63 Aligned_cols=139 Identities=22% Similarity=0.307 Sum_probs=81.9
Q ss_pred CCEEEEEECCCCHHHHHHHHHHHHCCCCE-EEEEEEECCCCC-CEEE--ECCCCEEEEEECCHHHH-CCCCEEEECCCHH
Q ss_conf 96179998166778999999997449980-789999747658-7560--02781589987794363-1884786068758
Q gi|254780307|r 1 MTFKVAVVGATGNVGREMLNIICERGFPI-SEVVALASERSA-GTKV--PFGKETIDVQDVKSYDF-SDTDICLMSAGHA 75 (335)
Q Consensus 1 M~~kvaIiGatG~vG~el~~lL~~~~~p~-~~l~~~~s~~~~-G~~i--~~~~~~~~~~~~~~~~~-~~~Divf~a~p~~ 75 (335)
|+|||||||+.|+.+...+..+... +. +++..+.+.+.. .+.. .++.. ..+.+.++.-- .++|+|+.|+|+.
T Consensus 2 ~~irvgiiG~G~~~~~~~~~~~~~~--~~~~~~vav~d~~~~~a~~~a~~~~~~-~~~~~~~~ll~~~~iD~V~Iatp~~ 78 (342)
T COG0673 2 KMIRVGIIGAGGIAGKAHLPALAAL--GGGLELVAVVDRDPERAEAFAEEFGIA-KAYTDLEELLADPDIDAVYIATPNA 78 (342)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHHC--CCCEEEEEEECCCHHHHHHHHHHCCCC-CCCCCHHHHHCCCCCCEEEEECCCH
T ss_conf 9327999898767888889999738--874699999649989999999981997-4529999994599998899969806
Q ss_pred HHHHHHHHHCCCCEEEEECCCCHHCCCCCCCC--CCCHHHHHHCCCCCCC--EECCCCCCCCCCCCCCCHHHHCCCCCCE
Q ss_conf 99999975045651799614510011211123--6410111110333431--2126764322211122001101787411
Q gi|254780307|r 76 VSSQMSPKIAANGCIVIDNSSAWRYDSDVPLI--VPEVNPQTISLASRKN--IIANPNCSTIQLVVALKPLHDLAMIKRV 151 (335)
Q Consensus 76 ~s~~~~~~~~~~g~~VIDlS~~~R~~~d~p~~--lPein~~~i~~~~~~~--~VanPgC~at~~~l~L~PL~~~~~i~~v 151 (335)
.=.+++.+++++|+.|+ .++ |+. +.|.. +.++.+++.+ +-..-+--=.+....++-|.+.+.|-.+
T Consensus 79 ~H~~~a~~AL~aGkhVl-------~EK--Pla~t~~ea~-~l~~~a~~~g~~l~v~~~~Rf~p~~~~~k~li~~g~iG~i 148 (342)
T COG0673 79 LHAELALAALEAGKHVL-------CEK--PLALTLEEAE-ELVELARKAGVKLMVGFNRRFDPAVQALKELIDSGALGEV 148 (342)
T ss_pred HHHHHHHHHHHCCCEEE-------EEC--CCCCCHHHHH-HHHHHHHHCCCEEEEEEHHHCCHHHHHHHHHHHCCCCCCE
T ss_conf 77999999997799699-------928--9989999999-9999999759949998846549899999999865987415
Q ss_pred E
Q ss_conf 4
Q gi|254780307|r 152 V 152 (335)
Q Consensus 152 ~ 152 (335)
.
T Consensus 149 ~ 149 (342)
T COG0673 149 V 149 (342)
T ss_pred E
T ss_conf 9
No 70
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=97.37 E-value=0.00058 Score=43.30 Aligned_cols=161 Identities=14% Similarity=0.216 Sum_probs=83.0
Q ss_pred CCEEEEEECCCCHHHHHHHHHHHHCCC-CEEEEEEEECCCCCCEEEECCCC-EEEEEECCHHHHCCCCEEEECCCHHHHH
Q ss_conf 961799981667789999999974499-80789999747658756002781-5899877943631884786068758999
Q gi|254780307|r 1 MTFKVAVVGATGNVGREMLNIICERGF-PISEVVALASERSAGTKVPFGKE-TIDVQDVKSYDFSDTDICLMSAGHAVSS 78 (335)
Q Consensus 1 M~~kvaIiGatG~vG~el~~lL~~~~~-p~~~l~~~~s~~~~G~~i~~~~~-~~~~~~~~~~~~~~~Divf~a~p~~~s~ 78 (335)
|..||+++|+ |.-|+.+++=|.+++. +..++.. ++++..+.-....+ .+.+..-..+....+|++|+|.....-.
T Consensus 1 M~kkI~fIG~-GnMg~Aii~Gl~~~~~~~~~~i~~--~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~Dii~LaVKP~~~~ 77 (272)
T PRK12491 1 MNKQIGFIGC-GNMGIAMIGGMINKNIVSPDQIIC--SDLNVSNLKNASDKYGITITTNNNEVANSADILILSIKPDLYS 77 (272)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCCCCCCCEEEE--ECCCHHHHHHHHHHCCCEEECCHHHHHHHCCEEEEEECHHHHH
T ss_conf 9986999856-799999999999788989676999--6979999999999719788668799973199999995778999
Q ss_pred HHHHHHC---CCCEEEEECCCCHHCC-------CC--CCCCCCCHHHHHHCCCCCCCEECCCCCCCCCCCCCCCHHHHCC
Q ss_conf 9997504---5651799614510011-------21--1123641011111033343121267643222111220011017
Q gi|254780307|r 79 QMSPKIA---ANGCIVIDNSSAWRYD-------SD--VPLIVPEVNPQTISLASRKNIIANPNCSTIQLVVALKPLHDLA 146 (335)
Q Consensus 79 ~~~~~~~---~~g~~VIDlS~~~R~~-------~d--~p~~lPein~~~i~~~~~~~~VanPgC~at~~~l~L~PL~~~~ 146 (335)
++.+.+. ..+..||+..+--..+ .+ +.=++|-+.-. +... -..+..+++|......... .|++..
T Consensus 78 ~vl~~l~~~~~~~~lviSi~AGi~i~~l~~~l~~~~~vvR~MPN~~a~-v~~g-~t~i~~~~~~~~~~~~~v~-~lf~~~ 154 (272)
T PRK12491 78 SVINQIKDQIKNDVIVVTIAAGKSIKSTENEFDRKLKVIRVMPNTPVL-VGEG-MSALCFNEMVTEKDIKEVL-NIFNIF 154 (272)
T ss_pred HHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHCCCCCEEEECCCHHHH-HCCC-CEEEECCCCCCHHHHHHHH-HHHHCC
T ss_conf 999998655269918999848999899999818998579978976999-6369-6578349989999999999-997247
Q ss_pred C-C---CCEEEEECCCCCCCCCCCC
Q ss_conf 8-7---4114652152211232110
Q gi|254780307|r 147 M-I---KRVVVTTYQSVSGAGKKGI 167 (335)
Q Consensus 147 ~-i---~~v~v~s~~g~SGaG~~~~ 167 (335)
+ + +.=.++..+++||.|-..+
T Consensus 155 G~~~~~~E~~~d~~TalsGSgPAy~ 179 (272)
T PRK12491 155 GQTEVVNEKLMDVVTSISGSSPAYV 179 (272)
T ss_pred CEEEEECCCCHHHHHHHHCCHHHHH
T ss_conf 6499963531101457834759999
No 71
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=97.36 E-value=0.0007 Score=42.78 Aligned_cols=95 Identities=14% Similarity=0.243 Sum_probs=60.3
Q ss_pred EEEEEECCCCHHHHHHHHHHHHCCCCEEEEEEEECCCCCCEEEEC--CCCEEEEEECCHHHHCCCCEEEECCCHHHHHHH
Q ss_conf 179998166778999999997449980789999747658756002--781589987794363188478606875899999
Q gi|254780307|r 3 FKVAVVGATGNVGREMLNIICERGFPISEVVALASERSAGTKVPF--GKETIDVQDVKSYDFSDTDICLMSAGHAVSSQM 80 (335)
Q Consensus 3 ~kvaIiGatG~vG~el~~lL~~~~~p~~~l~~~~s~~~~G~~i~~--~~~~~~~~~~~~~~~~~~Divf~a~p~~~s~~~ 80 (335)
|||+++|+ |-.|+.+++=|.++.+..-++. .++++..+.-.+ ......+..-+.+....+|++|+|.......++
T Consensus 1 MkIgfIG~-GnMg~Aii~Gl~~~~~~~~~i~--v~~r~~~~~~~l~~~~~~v~~~~~n~~~~~~~dvi~LaVKP~~~~~v 77 (255)
T PRK06476 1 MRIGFIGT-GAITEAMVTGLLSSPADVSEII--VSPRNAQIAARLAARFAKVRIAKDNQAVVDRSDVVFLAVRPQIAEEV 77 (255)
T ss_pred CEEEEECC-CHHHHHHHHHHHHCCCCCCCEE--EECCCHHHHHHHHHHCCCEEEECCHHHHHHHCCEEEEEECHHHHHHH
T ss_conf 98999864-6999999999997889925088--98989899999998769559857889998518878886178889988
Q ss_pred HHHHC-CCCEEEEECCCCHHC
Q ss_conf 97504-565179961451001
Q gi|254780307|r 81 SPKIA-ANGCIVIDNSSAWRY 100 (335)
Q Consensus 81 ~~~~~-~~g~~VIDlS~~~R~ 100 (335)
.+.+. ..+..||+..+--.+
T Consensus 78 l~~l~~~~~~~vISi~AGi~i 98 (255)
T PRK06476 78 LRALRFRPGQTVISVIAATTR 98 (255)
T ss_pred HHHHHCCCCCEEEEECCCCCH
T ss_conf 776205789789997378779
No 72
>pfam01408 GFO_IDH_MocA Oxidoreductase family, NAD-binding Rossmann fold. This family of enzymes utilize NADP or NAD. This family is called the GFO/IDH/MOCA family in swiss-prot.
Probab=97.36 E-value=0.00026 Score=45.37 Aligned_cols=86 Identities=23% Similarity=0.356 Sum_probs=59.1
Q ss_pred EEEEEECCCCHHHHHHHHHHHHCCCCEEEEEEEECCCCC-CEEEE--CCCCEEEEEECCHH-HHCCCCEEEECCCHHHHH
Q ss_conf 179998166778999999997449980789999747658-75600--27815899877943-631884786068758999
Q gi|254780307|r 3 FKVAVVGATGNVGREMLNIICERGFPISEVVALASERSA-GTKVP--FGKETIDVQDVKSY-DFSDTDICLMSAGHAVSS 78 (335)
Q Consensus 3 ~kvaIiGatG~vG~el~~lL~~~~~p~~~l~~~~s~~~~-G~~i~--~~~~~~~~~~~~~~-~~~~~Divf~a~p~~~s~ 78 (335)
|||||+|. |..|+..++-+.. ..|.+++..+.+.+.. .+.+. ++-+ .+.+.++. +..++|+|+.|+|+..-.
T Consensus 1 iki~iiG~-G~~g~~~~~~~~~-~~~~~~i~ai~d~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~iD~v~I~tp~~~H~ 76 (120)
T pfam01408 1 LRVGIVGA-GKIGRRHLRALNE-SQDGAELVGVLDPDPARAEAVAESFGVP--AYSDLEELLADPDVDAVSVATPPGLHF 76 (120)
T ss_pred CEEEEEEC-HHHHHHHHHHHHH-CCCCCEEEEEECCCHHHHHHHHHHHCCC--EECCHHHHHHCCCCCEEEECCCHHHHH
T ss_conf 98999907-7999999999985-5999789999829999999999983996--788699997377889899908746189
Q ss_pred HHHHHHCCCCEEEE
Q ss_conf 99975045651799
Q gi|254780307|r 79 QMSPKIAANGCIVI 92 (335)
Q Consensus 79 ~~~~~~~~~g~~VI 92 (335)
++...+.++|+.|+
T Consensus 77 ~~~~~~l~~g~~v~ 90 (120)
T pfam01408 77 ELALAALEAGKHVL 90 (120)
T ss_pred HHHHHHHHHCCEEE
T ss_conf 99999998199899
No 73
>pfam01210 NAD_Gly3P_dh_N NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus. NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain.
Probab=97.35 E-value=0.002 Score=39.98 Aligned_cols=108 Identities=13% Similarity=0.279 Sum_probs=63.6
Q ss_pred EEEEEECCCCHHHHHHHHHHHHCCCCEEEEEEEECCCCCCEEE-------EC----C-CCEEEEEECCHHHHCCCCEEEE
Q ss_conf 1799981667789999999974499807899997476587560-------02----7-8158998779436318847860
Q gi|254780307|r 3 FKVAVVGATGNVGREMLNIICERGFPISEVVALASERSAGTKV-------PF----G-KETIDVQDVKSYDFSDTDICLM 70 (335)
Q Consensus 3 ~kvaIiGatG~vG~el~~lL~~~~~p~~~l~~~~s~~~~G~~i-------~~----~-~~~~~~~~~~~~~~~~~Divf~ 70 (335)
.||+|+|+ |.-|..|-..|.+.+|+ +..++-+...-+.+ .+ . .+.+.+..--++...++|++|+
T Consensus 1 kKI~IiGa-G~wGtAla~~la~n~~~---V~l~~r~~~~~~~i~~~~~n~~~lp~~~l~~~i~~~~dl~~a~~~adiIii 76 (159)
T pfam01210 1 KKIAVLGA-GSWGTALAKVLARNGHE---VRLWGRDEELIEEINTTRENVKYLPGIKLPDNLRATTDLEEAIKGADIIVL 76 (159)
T ss_pred CEEEEECC-CHHHHHHHHHHHHCCCE---EEEEEECCHHHHHHHHCCCCCHHCCCCCCCCCEEECCCHHHHHHCCCEEEE
T ss_conf 98999996-99999999999987998---999990436667788669782104786455530542889999837989999
Q ss_pred CCCHHHHHHHHHHHC---CCCEEEEECCCCHHCCCCCCCCCCCHHHHHH
Q ss_conf 687589999997504---5651799614510011211123641011111
Q gi|254780307|r 71 SAGHAVSSQMSPKIA---ANGCIVIDNSSAWRYDSDVPLIVPEVNPQTI 116 (335)
Q Consensus 71 a~p~~~s~~~~~~~~---~~g~~VIDlS~~~R~~~d~p~~lPein~~~i 116 (335)
|.|+..-+++..++. ..+..+|.++--+ +++.-..+.|+-.+.+
T Consensus 77 avps~~~~~~~~~i~~~~~~~~~iv~~sKGi--e~~t~~~~s~i~~~~~ 123 (159)
T pfam01210 77 AVPSQALREVLKQLKGLLSPGAILVSLTKGI--EPGTLKLLSEIIEEEL 123 (159)
T ss_pred ECCHHHHHHHHHHHHHHCCCCCEEEEEECCC--CCCCCCCHHHHHHHHC
T ss_conf 1748899999999986557655688875144--2788752999999878
No 74
>TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II; InterPro: IPR006436 This family describes the type II glyceraldehyde-3-phosphate dehydrogenases which are limited to archaea. These enzymes catalyze the interconversion of 1,3-diphosphoglycerate and glyceraldehyde-3-phosphate, a central step in glycolysis and gluconeogenesis. In archaea, either NAD or NADP may be utilised as the cofactor.; GO: 0008943 glyceraldehyde-3-phosphate dehydrogenase activity, 0050661 NADP binding, 0051287 NAD binding, 0006096 glycolysis, 0005737 cytoplasm.
Probab=97.33 E-value=0.0015 Score=40.75 Aligned_cols=222 Identities=17% Similarity=0.304 Sum_probs=137.0
Q ss_pred EEEECCCCHHHHHHHHHHHHCCCCEEEEEEEE--CCCC-------CCEEEE---------CCCCEEEEEECCHHHHCCCC
Q ss_conf 99981667789999999974499807899997--4765-------875600---------27815899877943631884
Q gi|254780307|r 5 VAVVGATGNVGREMLNIICERGFPISEVVALA--SERS-------AGTKVP---------FGKETIDVQDVKSYDFSDTD 66 (335)
Q Consensus 5 vaIiGatG~vG~el~~lL~~~~~p~~~l~~~~--s~~~-------~G~~i~---------~~~~~~~~~~~~~~~~~~~D 66 (335)
|||.|- |.+|.+.-.-..+. |.-+|.-++ |++. .|-++. |...-+.+.-.-++-+..+|
T Consensus 1 VgiNGY-GTIGKRVAdAv~kQ--dDMklvGVtKtsPdfEA~~A~e~Gi~~Y~~~~e~~~~FEeaGi~V~GT~edL~ek~D 77 (335)
T TIGR01546 1 VGINGY-GTIGKRVADAVIKQ--DDMKLVGVTKTSPDFEAFIAKEKGIDIYVAAEEFLKKFEEAGIKVAGTVEDLLEKVD 77 (335)
T ss_pred CCCCCC-CCCCHHHHHHHCCC--CCCEEEEECCCCCCHHHHHHHHCCCEEEECCHHHHHHHHHCCCEEECCHHHHHHHCC
T ss_conf 923453-56222444441369--982377411689838888887679326426704431254368704425787310428
Q ss_pred EEEECCCHHHHHHHHH-HHCCCCE----------EEEECCC-CHHCCCCCCCCCCCHHHHHHCCCCCCCEECCCCCCCCC
Q ss_conf 7860687589999997-5045651----------7996145-10011211123641011111033343121267643222
Q gi|254780307|r 67 ICLMSAGHAVSSQMSP-KIAANGC----------IVIDNSS-AWRYDSDVPLIVPEVNPQTISLASRKNIIANPNCSTIQ 134 (335)
Q Consensus 67 ivf~a~p~~~s~~~~~-~~~~~g~----------~VIDlS~-~~R~~~d~p~~lPein~~~i~~~~~~~~VanPgC~at~ 134 (335)
||.=|+|.|.-+++=+ ...+.|. -|+|+|- +|--- .+.| .+.-|=.-+|-||+
T Consensus 78 IvVD~TP~G~GaknK~G~Yek~g~kAiFQGGEKaeva~~SF~a~~NY-----------~~al----GKdY~RVVSCNTTg 142 (335)
T TIGR01546 78 IVVDATPEGVGAKNKEGIYEKLGLKAIFQGGEKAEVADISFSALANY-----------EEAL----GKDYVRVVSCNTTG 142 (335)
T ss_pred EEEECCCCCCCCCCCCHHHHHHCCEEEEECCCCHHHHHHHHHHHHHH-----------HHHH----CCCEEEEEEECHHH
T ss_conf 88856878744323110366507613643783012442125555106-----------7631----78638998416267
Q ss_pred CCCCCCHHHHCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHH
Q ss_conf 11122001101787411465215221123211000000000000124554444551013740422553234720000110
Q gi|254780307|r 135 LVVALKPLHDLAMIKRVVVTTYQSVSGAGKKGIDELLAQTKAFLAKKTIENRVFTKNIAFNVIPHIDVFMDGGSTKEEWK 214 (335)
Q Consensus 135 ~~l~L~PL~~~~~i~~v~v~s~~g~SGaG~~~~~eL~~q~~~~~~~~~~~~~~~~~~la~n~iP~i~~~~~~g~~~ee~k 214 (335)
+.-.|-|+.+..+|+.|.++-.- =+|--+-+. .+. .| ..-|.+ -.+| ..|.+
T Consensus 143 L~RTln~ind~~~v~kVrAv~vR--RaADp~~vK--kGP----IN------aivP~P---~TvP-------SHHgp---- 194 (335)
T TIGR01546 143 LVRTLNAINDLSKVEKVRAVMVR--RAADPKEVK--KGP----IN------AIVPDP---ATVP-------SHHGP---- 194 (335)
T ss_pred HHHHHHHHHHHCCCCEEEEEEEE--CCCCHHHCC--CCC----CC------CCCCCC---CCCC-------CCCCC----
T ss_conf 88766433233061058999985--378933426--187----36------537831---7879-------88776----
Q ss_pred EEEEEEEEECCCCCCCCCCEEEEEEECCEEEEEEEECCCCCHHHHHHHHHHCCCCEEECCCC
Q ss_conf 11210001023432211200112110215798767246587899987310069838810268
Q gi|254780307|r 215 VLVETQKILDPNIKVSCTAARVPVFIGHAESVNIEFEKDISIKDAVAAINKSKGCIVVDKPD 276 (335)
Q Consensus 215 ~~~E~~kil~~~~~v~~t~~~vPv~rG~~~ti~i~l~~~~~~~~i~~~~~~~~~~~~~~~~~ 276 (335)
..+-++ +++.|.-++..||+.==|.=.+.++|+++++.+||.+.|++-+-+.++....
T Consensus 195 ---DV~tVi-~~lnI~TmA~~vPTTlMH~H~i~veLk~~v~~~Di~d~lenTpRvlL~~~k~ 252 (335)
T TIGR01546 195 ---DVQTVI-RDLNIATMALIVPTTLMHVHSIMVELKDKVEKEDILDVLENTPRVLLLESKK 252 (335)
T ss_pred ---CHHHHH-CCCCCCEEEEECCCHHCCCCEEEEEECCCCCHHHHHHHHCCCCEEEEEECCC
T ss_conf ---424341-2358001234314012141014677357656456876532886089873157
No 75
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=97.33 E-value=0.0028 Score=39.11 Aligned_cols=78 Identities=21% Similarity=0.420 Sum_probs=57.7
Q ss_pred EEEEECCCCHHHHHHHHHHHHCCCCEEEEEEEECCCCCCEEEECCCCEEEEEECCHHHHCCCCEEEECCCHHHHHHHHHH
Q ss_conf 79998166778999999997449980789999747658756002781589987794363188478606875899999975
Q gi|254780307|r 4 KVAVVGATGNVGREMLNIICERGFPISEVVALASERSAGTKVPFGKETIDVQDVKSYDFSDTDICLMSAGHAVSSQMSPK 83 (335)
Q Consensus 4 kvaIiGatG~vG~el~~lL~~~~~p~~~l~~~~s~~~~G~~i~~~~~~~~~~~~~~~~~~~~Divf~a~p~~~s~~~~~~ 83 (335)
+|.|||++|--|+-+.+.+...+|.+ ..+... +. +-.+..+.++|+|+.|.|=..+.++..+
T Consensus 100 ~i~IIGG~G~mG~~F~~~f~~sGy~V---~ild~~------------dw---~~~~~~~~~advViVsVPI~~T~~VI~~ 161 (374)
T PRK11199 100 PVVIVGGKGQLGRLFAKMLTLSGYQV---RILEKD------------DW---DRADDILADAGMVIVSVPIHLTEEVIEK 161 (374)
T ss_pred EEEEEECCCCHHHHHHHHHHHCCCEE---EEECCC------------CC---CCHHHHHHCCCEEEEEECHHHHHHHHHH
T ss_conf 17998079827799999999679879---961644------------45---3489887179989998145889999985
Q ss_pred HC--CCCEEEEECCCCHH
Q ss_conf 04--56517996145100
Q gi|254780307|r 84 IA--ANGCIVIDNSSAWR 99 (335)
Q Consensus 84 ~~--~~g~~VIDlS~~~R 99 (335)
+. ..+|.+.|++|-=.
T Consensus 162 l~~l~~~~lL~DiTSvK~ 179 (374)
T PRK11199 162 LPPLPEDCILVDLTSVKN 179 (374)
T ss_pred CCCCCCCCEEEECHHCCH
T ss_conf 778999868986100427
No 76
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=97.31 E-value=0.00083 Score=42.34 Aligned_cols=161 Identities=16% Similarity=0.259 Sum_probs=79.5
Q ss_pred CC-EEEEEECCCCHHHHHHHHHHHHCCC-CEEEEEEEECCCCCCEEEECCCCEEEEEEC--CHHHHCCCCEEEECCCHHH
Q ss_conf 96-1799981667789999999974499-807899997476587560027815899877--9436318847860687589
Q gi|254780307|r 1 MT-FKVAVVGATGNVGREMLNIICERGF-PISEVVALASERSAGTKVPFGKETIDVQDV--KSYDFSDTDICLMSAGHAV 76 (335)
Q Consensus 1 M~-~kvaIiGatG~vG~el~~lL~~~~~-p~~~l~~~~s~~~~G~~i~~~~~~~~~~~~--~~~~~~~~Divf~a~p~~~ 76 (335)
|+ |||+++|+ |.-|+.+++-|.+++. +..++.. .+ ++.-+.+....+...+.-. ..+...++|++|+|.....
T Consensus 1 m~mm~I~fIG~-GnMg~Aii~gl~~~~~~~~~~i~v-~~-r~~~~~~~~l~~~~~v~~~~~~~~~~~~~diI~LaVKP~~ 77 (279)
T PRK07679 1 MSIQNISFLGA-GSIAEAIIGGLLHANVVKGEQITV-SN-RSNETRLQELHQKYGVKGTHNKKELLTDANILFLAMKPKD 77 (279)
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHHCCCCCCCEEEE-EC-CCCHHHHHHHHHHHCCEEECCHHHHHHHCCEEEEECCHHH
T ss_conf 99788999876-899999999999787999757999-78-9849999999997196663777999844999999527899
Q ss_pred HHHHHHHHC---CCCEEEEECCCCHHCC-------CCCCC--CCCCHHHHHHCCCCCCCEECCCCCCCCCCCCCCCHHHH
Q ss_conf 999997504---5651799614510011-------21112--36410111110333431212676432221112200110
Q gi|254780307|r 77 SSQMSPKIA---ANGCIVIDNSSAWRYD-------SDVPL--IVPEVNPQTISLASRKNIIANPNCSTIQLVVALKPLHD 144 (335)
Q Consensus 77 s~~~~~~~~---~~g~~VIDlS~~~R~~-------~d~p~--~lPein~~~i~~~~~~~~VanPgC~at~~~l~L~PL~~ 144 (335)
-.++...+. ..+..||+.-+-..++ .+.++ ++|-+.-. +...- ..+..+++|.......+ ..|+.
T Consensus 78 ~~~v~~~i~~~~~~~~~iISi~AGi~~~~l~~~l~~~~~ivR~MPN~~~~-vg~g~-t~i~~~~~~~~~~~~~v-~~lf~ 154 (279)
T PRK07679 78 VAEALTPFKEYIHNNVLIISLLAGVSTHSIRNLLQKDVPIIRAMPNTSAA-ILKSA-TAISPSKHATAEHIQTA-KALFE 154 (279)
T ss_pred HHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHCCCCCCEEEECCCHHHH-HHCCC-EEECCCCCCCHHHHHHH-HHHHH
T ss_conf 99999998754589929999747888999997529998579835976788-50577-35527999999999999-99996
Q ss_pred CCC-C---CCEEEEECCCCCCCCCCCC
Q ss_conf 178-7---4114652152211232110
Q gi|254780307|r 145 LAM-I---KRVVVTTYQSVSGAGKKGI 167 (335)
Q Consensus 145 ~~~-i---~~v~v~s~~g~SGaG~~~~ 167 (335)
.++ + +.=.+++.+++||.|=..+
T Consensus 155 ~~G~~~~v~E~~~d~~TalsGSgPAf~ 181 (279)
T PRK07679 155 TIGLVSVVEEEDMHAVTALSGSGPAYI 181 (279)
T ss_pred HCCEEEEECHHHCCCHHHEECCHHHHH
T ss_conf 178599954333032100016648999
No 77
>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional
Probab=97.31 E-value=0.0021 Score=39.87 Aligned_cols=94 Identities=19% Similarity=0.221 Sum_probs=48.9
Q ss_pred CCEEEEEECCCCHHHHHHHHHHHHCCCCEEEEEEEECC-CCCCEEEECCCCEEEEEECC--H----HHHCCCCEEEECC-
Q ss_conf 96179998166778999999997449980789999747-65875600278158998779--4----3631884786068-
Q gi|254780307|r 1 MTFKVAVVGATGNVGREMLNIICERGFPISEVVALASE-RSAGTKVPFGKETIDVQDVK--S----YDFSDTDICLMSA- 72 (335)
Q Consensus 1 M~~kvaIiGatG~vG~el~~lL~~~~~p~~~l~~~~s~-~~~G~~i~~~~~~~~~~~~~--~----~~~~~~Divf~a~- 72 (335)
|| ||-|.|++|++|..|++.|.++ ...++..+.-. ...+..+....-.+.-.|+. . ....++|+||-.+
T Consensus 1 MK-kILVTGgaGFIGs~Lv~~Ll~~--~~~~V~~~d~~~~~~~~~~~~~~~~~~~gDi~~~~~~~~~~~~~~D~V~HlAa 77 (347)
T PRK11908 1 MK-KVLILGVNGFIGHHLTKRILET--TDWEVYGMDMQTDRLGDLVNHPRMHFFEGDITINKEWIEYHVKKCDVVLPLVA 77 (347)
T ss_pred CC-EEEEECCCCHHHHHHHHHHHHH--CCCEEEEEECCCCCHHHHCCCCCEEEEECCCCCCHHHHHHHHCCCCEEEEEHH
T ss_conf 98-8999757438999999999982--89789999799763677557998599977544699999976605988975200
Q ss_pred CHHH-----------------HHHHHHHHCCCCEEEEECCCC
Q ss_conf 7589-----------------999997504565179961451
Q gi|254780307|r 73 GHAV-----------------SSQMSPKIAANGCIVIDNSSA 97 (335)
Q Consensus 73 p~~~-----------------s~~~~~~~~~~g~~VIDlS~~ 97 (335)
-+.. +..+...+.+.|.++|=.|+.
T Consensus 78 ~~~~~~~~~~p~~~~~~nv~~t~~ll~~~~~~~~r~if~SS~ 119 (347)
T PRK11908 78 IATPATYVKQPLRVFELDFEANLPIVRSAVKYGKHLVFPSTS 119 (347)
T ss_pred CCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCC
T ss_conf 036488886889999999999999999999739838962661
No 78
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=97.29 E-value=0.0045 Score=37.89 Aligned_cols=92 Identities=18% Similarity=0.359 Sum_probs=55.8
Q ss_pred CCEEEEEECCCCHHHHHHHHHHHHCCCCEEEEEEEECC------CCCCEEEE-CCCCEEEEE------ECCHHHHCCCCE
Q ss_conf 96179998166778999999997449980789999747------65875600-278158998------779436318847
Q gi|254780307|r 1 MTFKVAVVGATGNVGREMLNIICERGFPISEVVALASE------RSAGTKVP-FGKETIDVQ------DVKSYDFSDTDI 67 (335)
Q Consensus 1 M~~kvaIiGatG~vG~el~~lL~~~~~p~~~l~~~~s~------~~~G~~i~-~~~~~~~~~------~~~~~~~~~~Di 67 (335)
|-|||+|+|+ |-+|.-+--.|.+.+|+ +.+++.. +..|-.+. ..+.+..+. ..++.+....|+
T Consensus 1 ~mmkI~IiGa-GAvG~~~a~~L~~aG~~---V~lv~r~~~~~~i~~~Gl~i~~~~~~~~~~~~~~~~~~~~~~~~~~~D~ 76 (341)
T PRK08229 1 MMARICVLGA-GSIGCYLGGRLAAAGAD---VTLIGRARIGDEIRAHGLRLTDYRGRDVRVPPDAIAFSTDPAALATADL 76 (341)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCCCC---EEEEECHHHHHHHHHCCCEEECCCCCEEEECCCEEEECCCHHHCCCCCE
T ss_conf 9477999896-79999999999858998---7999567899999967909963899768963661561488656589998
Q ss_pred EEECCCHHHHHH---HHHHHCCCCEEEEECCC
Q ss_conf 860687589999---99750456517996145
Q gi|254780307|r 68 CLMSAGHAVSSQ---MSPKIAANGCIVIDNSS 96 (335)
Q Consensus 68 vf~a~p~~~s~~---~~~~~~~~g~~VIDlS~ 96 (335)
+|+|+-.-...+ ....+...++.|+.+-.
T Consensus 77 viv~vKa~~~~~a~~~l~~~l~~~t~il~lQN 108 (341)
T PRK08229 77 VLVTVKSAATADAAAALAGHARPGAVVVSFQN 108 (341)
T ss_pred EEEEECCCCHHHHHHHHHHHCCCCCEEEEEEC
T ss_conf 99970757889999999864389968999504
No 79
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=97.28 E-value=0.0011 Score=41.62 Aligned_cols=103 Identities=19% Similarity=0.297 Sum_probs=61.9
Q ss_pred EEEEEECCCCHHHHHHHHHHHHCCCCEEEEEEEECCCCCCEEEE-CCCCEEEEEECCHHH-HCCCCEEEECCCHHHHHHH
Q ss_conf 17999816677899999999744998078999974765875600-278158998779436-3188478606875899999
Q gi|254780307|r 3 FKVAVVGATGNVGREMLNIICERGFPISEVVALASERSAGTKVP-FGKETIDVQDVKSYD-FSDTDICLMSAGHAVSSQM 80 (335)
Q Consensus 3 ~kvaIiGatG~vG~el~~lL~~~~~p~~~l~~~~s~~~~G~~i~-~~~~~~~~~~~~~~~-~~~~Divf~a~p~~~s~~~ 80 (335)
|+++|+| +|.+|.-|-+++..-+| |+.. +|++...+.-. -......++-.+..+ ...+|+||++.|-..-...
T Consensus 2 ~~~~i~G-tGniG~alA~~~a~ag~---eV~i-gs~r~~~~~~a~a~~l~~~i~~~~~~dA~~~aDVVvLAVP~~a~~~v 76 (211)
T COG2085 2 MIIAIIG-TGNIGSALALRLAKAGH---EVII-GSSRGPKALAAAAAALGPLITGGSNEDAAALADVVVLAVPFEAIPDV 76 (211)
T ss_pred CEEEEEC-CCHHHHHHHHHHHHCCC---EEEE-ECCCCHHHHHHHHHHHCCCCCCCCHHHHHHCCCEEEEECCHHHHHHH
T ss_conf 1799962-57187899999996797---3999-64788067889998645653347768888439989995457877769
Q ss_pred HHHHCC--CCEEEEECCCCH--HCCCCCCCCCCC
Q ss_conf 975045--651799614510--011211123641
Q gi|254780307|r 81 SPKIAA--NGCIVIDNSSAW--RYDSDVPLIVPE 110 (335)
Q Consensus 81 ~~~~~~--~g~~VIDlS~~~--R~~~d~p~~lPe 110 (335)
.+.+.+ .|++|||.+-.. ...+.-.|+.|+
T Consensus 77 ~~~l~~~~~~KIvID~tnp~~~~~~~~~~~~~~~ 110 (211)
T COG2085 77 LAELRDALGGKIVIDATNPIEVNGEPGDLYLVPS 110 (211)
T ss_pred HHHHHHHHCCEEEEECCCCCCCCCCCCCCCCCCC
T ss_conf 9999987099099966887544688301036888
No 80
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=97.28 E-value=0.0019 Score=40.16 Aligned_cols=108 Identities=14% Similarity=0.305 Sum_probs=65.5
Q ss_pred EEEEEECCCCHHHHHHHHHHHHCCCCEEEEEEEECCCCCCEEE-------EC----C-CCEEEEEECCHHHHCCCCEEEE
Q ss_conf 1799981667789999999974499807899997476587560-------02----7-8158998779436318847860
Q gi|254780307|r 3 FKVAVVGATGNVGREMLNIICERGFPISEVVALASERSAGTKV-------PF----G-KETIDVQDVKSYDFSDTDICLM 70 (335)
Q Consensus 3 ~kvaIiGatG~vG~el~~lL~~~~~p~~~l~~~~s~~~~G~~i-------~~----~-~~~~~~~~~~~~~~~~~Divf~ 70 (335)
|||+|+|+ |-=|..|-..|.+.+| ++..++-++..=+.+ .+ . .+.+....--.+..+++|++|+
T Consensus 2 mkI~ViGa-GawGtAlA~~la~n~~---~V~lw~r~~~~~~~In~~~~n~~ylp~i~L~~nI~~t~dl~~~l~~ad~iii 77 (325)
T PRK00094 2 MKIAVLGA-GSWGTALAILLARNGH---DVVLWGRDPEHAAEINTDRENPRYLPGIKLPDNLRATSDLAEALADADLILV 77 (325)
T ss_pred CEEEEECC-CHHHHHHHHHHHHCCC---EEEEEEECHHHHHHHHHCCCCCCCCCCCCCCCCEEEECCHHHHHHCCCEEEE
T ss_conf 88999898-9999999999997899---7899983899999999649886568978589983897899999837984999
Q ss_pred CCCHHHHHHHHHHHC---CCCEEEEECCCCHHCCCCCCCCCCCHHHHHH
Q ss_conf 687589999997504---5651799614510011211123641011111
Q gi|254780307|r 71 SAGHAVSSQMSPKIA---ANGCIVIDNSSAWRYDSDVPLIVPEVNPQTI 116 (335)
Q Consensus 71 a~p~~~s~~~~~~~~---~~g~~VIDlS~~~R~~~d~p~~lPein~~~i 116 (335)
|.|+..-+++.+++. +.++.+|.++-=+ +++--..+.|+-.+.+
T Consensus 78 avPs~~~~~~l~~i~~~i~~~~~li~~tKGl--e~~t~~~~seii~~~l 124 (325)
T PRK00094 78 AVPSHAFREVLKQLKPLLRPDAPIVWATKGI--EAGTGKLLSEVAEEEL 124 (325)
T ss_pred ECCHHHHHHHHHHHHHHCCCCCEEEEEECCE--ECCCCCCHHHHHHHHC
T ss_conf 4576999999999986468997499976556--2488751999999973
No 81
>PRK05472 redox-sensing transcriptional repressor Rex; Provisional
Probab=97.23 E-value=0.0014 Score=41.04 Aligned_cols=92 Identities=27% Similarity=0.381 Sum_probs=67.4
Q ss_pred CEEEEEECCCCHHHHHHHHHH--HHCCCCEEEEEEEE--CCCCCCEEEECCCCEEEEEECCHHH----HCCCCEEEECCC
Q ss_conf 617999816677899999999--74499807899997--4765875600278158998779436----318847860687
Q gi|254780307|r 2 TFKVAVVGATGNVGREMLNII--CERGFPISEVVALA--SERSAGTKVPFGKETIDVQDVKSYD----FSDTDICLMSAG 73 (335)
Q Consensus 2 ~~kvaIiGatG~vG~el~~lL--~~~~~p~~~l~~~~--s~~~~G~~i~~~~~~~~~~~~~~~~----~~~~Divf~a~p 73 (335)
.++++|+|+ |-.|+.|+.-- .+ ..++++.+. +++..|+.+ ..+.+.++++.. -.++++.++|.|
T Consensus 84 ~~~v~lvGa-GnLG~AL~~y~gf~~---~gf~Iva~FD~dp~kiG~~i----~gi~V~~i~~L~~~i~~~~i~iaIiaVP 155 (211)
T PRK05472 84 TTNVALVGA-GNLGRALLNYNGFKK---RGFKIVAAFDVDPEKVGTKI----GGIPVYHIDELEEVIKENDIEIAILTVP 155 (211)
T ss_pred CCEEEEECC-CHHHHHHHHCCCHHH---CCCEEEEEECCCHHHCCCEE----CCEEEECHHHHHHHHHHHCCCEEEEECC
T ss_conf 750899888-779999984876231---89789999748978859883----8838734999999999819938999557
Q ss_pred HHHHHHHHHHHCCCCEEEEECCCCHHCC
Q ss_conf 5899999975045651799614510011
Q gi|254780307|r 74 HAVSSQMSPKIAANGCIVIDNSSAWRYD 101 (335)
Q Consensus 74 ~~~s~~~~~~~~~~g~~VIDlS~~~R~~ 101 (335)
.+.+++.+..+.++|.+=|=+=+..++.
T Consensus 156 ~~~AQ~vad~Lv~aGIk~IlNFap~~L~ 183 (211)
T PRK05472 156 AEAAQEVADRLVEAGIKGILNFAPVRLN 183 (211)
T ss_pred HHHHHHHHHHHHHHCCEEEEECCCCCCC
T ss_conf 6889999999998198399976872447
No 82
>KOG4777 consensus
Probab=97.19 E-value=0.00024 Score=45.58 Aligned_cols=109 Identities=29% Similarity=0.343 Sum_probs=62.0
Q ss_pred EEEEEEE-CCCCCCCCCCEEEEEEECCEEEEEEEECCCCCHHHHHHH---------HHH-CCC--CEEECCCCCCCCCCH
Q ss_conf 2100010-234322112001121102157987672465878999873---------100-698--388102688999761
Q gi|254780307|r 217 VETQKIL-DPNIKVSCTAARVPVFIGHAESVNIEFEKDISIKDAVAA---------INK-SKG--CIVVDKPDKNEYITP 283 (335)
Q Consensus 217 ~E~~kil-~~~~~v~~t~~~vPv~rG~~~ti~i~l~~~~~~~~i~~~---------~~~-~~~--~~~~~~~~~~~~~~~ 283 (335)
++.|++. +..++...+|.++|+.+-|.+...+.++...+...+... +.. .+. ....++...+.|---
T Consensus 240 qcnRv~v~Dgh~~cis~~f~~~~~pa~~qv~~~l~eyv~d~~klgc~sapkq~iyv~dd~apdrPqPrldrN~d~gy~Vs 319 (361)
T KOG4777 240 QCNRVIVNDGHVKCISTCFRVPVMPAHAQVVNLLFEYVLDENKLGCISAPKQGIYVIDDRAPDRPQPRLDRNKDDGYGVS 319 (361)
T ss_pred HCCEEEEECCCEEEEEEEEECCCCCCHHHHHHHHHHCCCCHHHCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCEEE
T ss_conf 12346675670689988860688886899999998646874332230277874799447889999864134667774056
Q ss_pred HHHCCCCCEEEEEEEECCCCCCEEEEEEEECCHHHHHHHHHHHHHHHHH
Q ss_conf 5434897326752776366888699999701302236799999999988
Q gi|254780307|r 284 VESIRRDLVFVSRIRKDPTLKSGLNLWIVANNLRKGAALNAVQIAELVA 332 (335)
Q Consensus 284 ~~~~g~~~v~Vgrvr~~~~~~~~~~~~~~~DNL~kGAAg~AVq~anlm~ 332 (335)
+.-...+..+-+.. -.+...+++|..+||++.++||.++.++
T Consensus 320 VGRIR~D~~~D~kf-------v~L~hnt~~gaag~G~l~aev~ia~~Ll 361 (361)
T KOG4777 320 VGRIRRDVSQDGKF-------VVLDHNTCGGAAGKGALLAEVQIAEMLL 361 (361)
T ss_pred EEEEECCCCCCCCE-------EEEEEEEEHHHHCCHHHHHHHHHHHHCC
T ss_conf 56652153346526-------9997502210121115788999886439
No 83
>COG2344 AT-rich DNA-binding protein [General function prediction only]
Probab=97.18 E-value=0.0007 Score=42.81 Aligned_cols=91 Identities=24% Similarity=0.377 Sum_probs=66.1
Q ss_pred EEEEEECCCCHHHHHHHHHH-HHCCCCEEEEEEE-E-CCCCCCEEEECCCCEEEEEECCHHH----HCCCCEEEECCCHH
Q ss_conf 17999816677899999999-7449980789999-7-4765875600278158998779436----31884786068758
Q gi|254780307|r 3 FKVAVVGATGNVGREMLNII-CERGFPISEVVAL-A-SERSAGTKVPFGKETIDVQDVKSYD----FSDTDICLMSAGHA 75 (335)
Q Consensus 3 ~kvaIiGatG~vG~el~~lL-~~~~~p~~~l~~~-~-s~~~~G~~i~~~~~~~~~~~~~~~~----~~~~Divf~a~p~~ 75 (335)
+|+.|+|+ |..|+.|+..- .++ ..+.+... . .++..|+.+.- +.+.++++.+ -.++|++++|.|.+
T Consensus 85 tnviiVG~-GnlG~All~Y~f~~~--~~~~iv~~FDv~~~~VG~~~~~----v~V~~~d~le~~v~~~dv~iaiLtVPa~ 157 (211)
T COG2344 85 TNVIIVGV-GNLGRALLNYNFSKK--NGMKIVAAFDVDPDKVGTKIGD----VPVYDLDDLEKFVKKNDVEIAILTVPAE 157 (211)
T ss_pred EEEEEECC-CHHHHHHHCCCCHHH--CCCEEEEEECCCHHHHCCCCCC----EEEECHHHHHHHHHHCCCCEEEEECCHH
T ss_conf 34899905-708889860742332--6935999961787883752488----1455268888898861761899973489
Q ss_pred HHHHHHHHHCCCCEEEEECCCCHHC
Q ss_conf 9999997504565179961451001
Q gi|254780307|r 76 VSSQMSPKIAANGCIVIDNSSAWRY 100 (335)
Q Consensus 76 ~s~~~~~~~~~~g~~VIDlS~~~R~ 100 (335)
.+++.+..+.++|++-|=+=+.-|+
T Consensus 158 ~AQ~vad~Lv~aGVkGIlNFtPv~l 182 (211)
T COG2344 158 HAQEVADRLVKAGVKGILNFTPVRL 182 (211)
T ss_pred HHHHHHHHHHHCCCCEEEECCCEEE
T ss_conf 8999999999838735884263575
No 84
>pfam03447 NAD_binding_3 Homoserine dehydrogenase, NAD binding domain. This domain adopts a Rossmann NAD binding fold. The C-terminal domain of homoserine dehydrogenase contributes a single helix to this structural domain, which is not included in the Pfam model.
Probab=97.15 E-value=0.0025 Score=39.41 Aligned_cols=85 Identities=16% Similarity=0.176 Sum_probs=57.7
Q ss_pred CHHHHHHHHHHHHC-CCCEEEEEEEECCCC--CCEEEECCCCEEEEEECCHHH-HCCCCEEEECCCHHHHHHHHHHHCCC
Q ss_conf 77899999999744-998078999974765--875600278158998779436-31884786068758999999750456
Q gi|254780307|r 12 GNVGREMLNIICER-GFPISEVVALASERS--AGTKVPFGKETIDVQDVKSYD-FSDTDICLMSAGHAVSSQMSPKIAAN 87 (335)
Q Consensus 12 G~vG~el~~lL~~~-~~p~~~l~~~~s~~~--~G~~i~~~~~~~~~~~~~~~~-~~~~Divf~a~p~~~s~~~~~~~~~~ 87 (335)
|.||+.+.++|.++ ....+++..+...+. ..+.... .......++++.- ..++|+|+-|+|.+.+.++...+.++
T Consensus 3 G~VG~~v~~~l~~~~~~~~~~l~~v~~r~~~~~~~~~~~-~~~~~~~d~~~ll~~~~iDvVVE~~g~~~~~~~~~~aL~~ 81 (116)
T pfam03447 3 GAIGSGLLELLLRQQEEIPLELVAVADRDLLSKARAALL-GDEPVTLDLDDLVADPRPDVVVECASSEAVAEYVLKALKA 81 (116)
T ss_pred CCHHHHHHHHHHHCCCCCCEEEEEEEECCHHHCCCCCCC-CCCEEECCHHHHHCCCCCCEEEECCCCHHHHHHHHHHHHC
T ss_conf 702899999999492035679999984783432321246-6671577999996188998999889948999999999987
Q ss_pred CEEEEECCCC
Q ss_conf 5179961451
Q gi|254780307|r 88 GCIVIDNSSA 97 (335)
Q Consensus 88 g~~VIDlS~~ 97 (335)
|+.||-.+-+
T Consensus 82 GkhVVTaNK~ 91 (116)
T pfam03447 82 GKHVVTASKG 91 (116)
T ss_pred CCEEEEECHH
T ss_conf 9989990788
No 85
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=97.14 E-value=0.0031 Score=38.90 Aligned_cols=70 Identities=20% Similarity=0.418 Sum_probs=45.3
Q ss_pred EEEEEECCCCHHHHHHHHHHHHCCCCEEEEEEEECCC----CCCEEEE------CCCCEEEEEEC-CHHHHCCCCEEEEC
Q ss_conf 1799981667789999999974499807899997476----5875600------27815899877-94363188478606
Q gi|254780307|r 3 FKVAVVGATGNVGREMLNIICERGFPISEVVALASER----SAGTKVP------FGKETIDVQDV-KSYDFSDTDICLMS 71 (335)
Q Consensus 3 ~kvaIiGatG~vG~el~~lL~~~~~p~~~l~~~~s~~----~~G~~i~------~~~~~~~~~~~-~~~~~~~~Divf~a 71 (335)
|||+|+||+|.||..+.-.|..++ -..||.++.-.. ..|.... +......+..- +.++++++|+++.+
T Consensus 1 mKV~IiGAaG~VG~~~a~~l~~~~-~~~el~LiD~~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~d~~~~~daDivVit 79 (309)
T cd05294 1 MKVSIIGASGRVGSATALLLAKED-VVKEINLISRPKSLEKLKGLRLDIYDALAAAGIDAEIKISSDLSDVAGSDIVIIT 79 (309)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCC-CCCEEEEEECCCCCCCCCEEEHHHHCCCCCCCCCCEEEECCCHHHHCCCCEEEEC
T ss_conf 989999999769999999998379-9875999605564342311235545034336887679827988996899999987
Q ss_pred CC
Q ss_conf 87
Q gi|254780307|r 72 AG 73 (335)
Q Consensus 72 ~p 73 (335)
++
T Consensus 80 AG 81 (309)
T cd05294 80 AG 81 (309)
T ss_pred CC
T ss_conf 89
No 86
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=97.13 E-value=0.0032 Score=38.81 Aligned_cols=71 Identities=24% Similarity=0.315 Sum_probs=41.5
Q ss_pred CEEEEEECCCCHHHHHHHHHHHHCC----CCEEEEEEEECCCC----CCEEEECC------CCEEEEEECCHHHHCCCCE
Q ss_conf 6179998166778999999997449----98078999974765----87560027------8158998779436318847
Q gi|254780307|r 2 TFKVAVVGATGNVGREMLNIICERG----FPISEVVALASERS----AGTKVPFG------KETIDVQDVKSYDFSDTDI 67 (335)
Q Consensus 2 ~~kvaIiGatG~vG~el~~lL~~~~----~p~~~l~~~~s~~~----~G~~i~~~------~~~~~~~~~~~~~~~~~Di 67 (335)
.|||+|+||+|.+|+-|.-+|...+ ...++|.++..+.. .|...... .+...+..=..++++++|+
T Consensus 2 p~KV~IiGAaG~IG~~la~~la~g~l~g~~~~v~l~L~Di~~~~~~l~G~amDl~~~a~~~~~~v~~~~~~~~a~~~aDv 81 (322)
T cd01338 2 PVRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQALKALEGVAMELEDCAFPLLAEIVITDDPNVAFKDADW 81 (322)
T ss_pred CEEEEEECCCCHHHHHHHHHHHHCHHCCCCCEEEEEEECCCCCCCCCCEEEEEHHHCCCCCCCCEEEECCHHHHHCCCCE
T ss_conf 70999989996899999999971113079972699997575756667657744532676545877974887898378878
Q ss_pred EEECC
Q ss_conf 86068
Q gi|254780307|r 68 CLMSA 72 (335)
Q Consensus 68 vf~a~ 72 (335)
|+...
T Consensus 82 Vvita 86 (322)
T cd01338 82 ALLVG 86 (322)
T ss_pred EEEEC
T ss_conf 99936
No 87
>PRK06153 hypothetical protein; Provisional
Probab=97.11 E-value=0.00072 Score=42.73 Aligned_cols=20 Identities=20% Similarity=0.084 Sum_probs=11.2
Q ss_pred EEEEECCCCCHHHHHHHHHH
Q ss_conf 87672465878999873100
Q gi|254780307|r 246 VNIEFEKDISIKDAVAAINK 265 (335)
Q Consensus 246 i~i~l~~~~~~~~i~~~~~~ 265 (335)
+++-..++....-|.+.|..
T Consensus 270 vFvcvD~G~~r~~I~~~L~~ 289 (393)
T PRK06153 270 VFVCVDKGSSRKVIFDYLEA 289 (393)
T ss_pred EEEEECCCCHHHHHHHHHHH
T ss_conf 99994488047899999998
No 88
>COG0460 ThrA Homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=97.11 E-value=0.0018 Score=40.31 Aligned_cols=95 Identities=23% Similarity=0.247 Sum_probs=55.2
Q ss_pred CCEEEEEECCCCHHHHHHHHHHHHCCC-------CEEEEEEEECCCC-CCEEEECCCCEEEEEEC-----CHHH-HCCCC
Q ss_conf 961799981667789999999974499-------8078999974765-87560027815899877-----9436-31884
Q gi|254780307|r 1 MTFKVAVVGATGNVGREMLNIICERGF-------PISEVVALASERS-AGTKVPFGKETIDVQDV-----KSYD-FSDTD 66 (335)
Q Consensus 1 M~~kvaIiGatG~vG~el~~lL~~~~~-------p~~~l~~~~s~~~-~G~~i~~~~~~~~~~~~-----~~~~-~~~~D 66 (335)
|++||+|+|. |.||+.++++|.+++. -.+++..++.++- .=+.+....-.....+. ..+. ..+.|
T Consensus 2 ~~v~v~l~G~-G~VG~~~~~il~~~~~~l~~~~g~~i~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 80 (333)
T COG0460 2 KTVKVGLLGL-GTVGSGVLEILAEKQEELRKRAGIEIRVVAVADRDGSLVRDLDLLNAEVWTTDGALSLGDEVLLDEDID 80 (333)
T ss_pred CEEEEEEECC-CCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCCHHHHEECCCCCCCHHHHCCCCCC
T ss_conf 5489999833-714299999999826888763287269999996153011356653323430055324427665045688
Q ss_pred EEEECCCH--HHHH--HHHHHHCCCCEEEEECCC
Q ss_conf 78606875--8999--999750456517996145
Q gi|254780307|r 67 ICLMSAGH--AVSS--QMSPKIAANGCIVIDNSS 96 (335)
Q Consensus 67 ivf~a~p~--~~s~--~~~~~~~~~g~~VIDlS~ 96 (335)
++.-+.|. +.++ ++..++.++|..||-..-
T Consensus 81 vvve~~~~d~~~~~~~~~~~~al~~GkhVVTaNK 114 (333)
T COG0460 81 VVVELVGGDVEPAEPADLYLKALENGKHVVTANK 114 (333)
T ss_pred EEEECCCCCCCCHHHHHHHHHHHHCCCEEECCCC
T ss_conf 7985576668741238999999975996997896
No 89
>pfam03807 F420_oxidored NADP oxidoreductase coenzyme F420-dependent.
Probab=97.10 E-value=0.00078 Score=42.52 Aligned_cols=88 Identities=18% Similarity=0.394 Sum_probs=54.5
Q ss_pred EEEEECCCCHHHHHHHHHHHHCCCCEEEEEEEECCCCCCEEEECCCC-EEEEEECCH-HHHCCCCEEEECCCHHHHHHHH
Q ss_conf 79998166778999999997449980789999747658756002781-589987794-3631884786068758999999
Q gi|254780307|r 4 KVAVVGATGNVGREMLNIICERGFPISEVVALASERSAGTKVPFGKE-TIDVQDVKS-YDFSDTDICLMSAGHAVSSQMS 81 (335)
Q Consensus 4 kvaIiGatG~vG~el~~lL~~~~~p~~~l~~~~s~~~~G~~i~~~~~-~~~~~~~~~-~~~~~~Divf~a~p~~~s~~~~ 81 (335)
||+|+|+ |..|..+.+-|.+.+|+. ....+ ++.-+.-....+ ...+...+. +...++|++|+|.|.....++.
T Consensus 1 KIg~IG~-G~mg~ai~~~l~~~g~~~---~~~~~-r~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIilavkp~~~~~vl 75 (93)
T pfam03807 1 KIGIIGA-GNMGEALARGLAAAGHEV---IIANS-RNPEKAAALAEELGVGATAVSNEEAAEEADVVILAVKPEDAPEVL 75 (93)
T ss_pred CEEEECC-HHHHHHHHHHHHHCCCCC---EEEEC-CCHHHHHHHHHHHCCCCCCCCHHHHHHCCCEEEEEECHHHHHHHH
T ss_conf 9899970-099999999999779961---27864-878999999998199764589999974499899997999999999
Q ss_pred HHHCC--CCEEEEECCC
Q ss_conf 75045--6517996145
Q gi|254780307|r 82 PKIAA--NGCIVIDNSS 96 (335)
Q Consensus 82 ~~~~~--~g~~VIDlS~ 96 (335)
+.+.. .+..|||..+
T Consensus 76 ~~i~~~~~~k~vISv~a 92 (93)
T pfam03807 76 AELADLLKGKLVISITN 92 (93)
T ss_pred HHHHHHCCCCEEEEECC
T ss_conf 98762508999998099
No 90
>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=97.08 E-value=0.00082 Score=42.37 Aligned_cols=156 Identities=17% Similarity=0.320 Sum_probs=91.5
Q ss_pred EEEEEECCCCHHHHHHHHHHHHCC-CCEEEEEEEECCCCCCEEE----ECCCCEEEEEECCH-HHHCCCCEEEECCCHHH
Q ss_conf 179998166778999999997449-9807899997476587560----02781589987794-36318847860687589
Q gi|254780307|r 3 FKVAVVGATGNVGREMLNIICERG-FPISEVVALASERSAGTKV----PFGKETIDVQDVKS-YDFSDTDICLMSAGHAV 76 (335)
Q Consensus 3 ~kvaIiGatG~vG~el~~lL~~~~-~p~~~l~~~~s~~~~G~~i----~~~~~~~~~~~~~~-~~~~~~Divf~a~p~~~ 76 (335)
|||+++|+ |-.|+-+++-|.++. .|..++.. ++++.-+.- .|+.. . ..+. ......|++|+|.....
T Consensus 2 ~~IgfIG~-G~Mg~Ai~~gl~~~g~~~~~~I~v--~~~~~e~~~~l~~~~g~~---~-~~~~~~~~~~advv~LavKPq~ 74 (266)
T COG0345 2 MKIGFIGA-GNMGEAILSGLLKSGALPPEEIIV--TNRSEEKRAALAAEYGVV---T-TTDNQEAVEEADVVFLAVKPQD 74 (266)
T ss_pred CEEEEECC-CHHHHHHHHHHHHCCCCCCCEEEE--ECCCHHHHHHHHHHCCCC---C-CCCHHHHHHHCCEEEEEECHHH
T ss_conf 65899846-889999999999668998023898--379999999999984985---5-6867988740898999848276
Q ss_pred HHHHHHHHCC--CCEEEEECCCCHHCCC------CCC--CCCCCHHHHHHCCCCCCCEECCCCCCCCCCCCCCCHHHHCC
Q ss_conf 9999975045--6517996145100112------111--23641011111033343121267643222111220011017
Q gi|254780307|r 77 SSQMSPKIAA--NGCIVIDNSSAWRYDS------DVP--LIVPEVNPQTISLASRKNIIANPNCSTIQLVVALKPLHDLA 146 (335)
Q Consensus 77 s~~~~~~~~~--~g~~VIDlS~~~R~~~------d~p--~~lPein~~~i~~~~~~~~VanPgC~at~~~l~L~PL~~~~ 146 (335)
..++.+++.. .+..||+..+--+.+. +.+ =++|-++-..-+-. ..+..+.+|.......+..-|...+
T Consensus 75 ~~~vl~~l~~~~~~~lvISiaAGv~~~~l~~~l~~~~vvR~MPNt~a~vg~g~--t~i~~~~~~~~~~~~~v~~l~~~~G 152 (266)
T COG0345 75 LEEVLSKLKPLTKDKLVISIAAGVSIETLERLLGGLRVVRVMPNTPALVGAGV--TAISANANVSEEDKAFVEALLSAVG 152 (266)
T ss_pred HHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHCCCCCEEEECCCHHHHHCCCC--EEEECCCCCCHHHHHHHHHHHHHCC
T ss_conf 89999973235688879997079979999987489966996788588971752--2651376589889999999998259
Q ss_pred CC---CCEEEEECCCCCCCCCCCC
Q ss_conf 87---4114652152211232110
Q gi|254780307|r 147 MI---KRVVVTTYQSVSGAGKKGI 167 (335)
Q Consensus 147 ~i---~~v~v~s~~g~SGaG~~~~ 167 (335)
.+ +.-.+++.+++||.|-..+
T Consensus 153 ~v~~v~E~~~da~TaisGSgPAyv 176 (266)
T COG0345 153 KVVEVEESLMDAVTALSGSGPAYV 176 (266)
T ss_pred CEEEECHHHHHHHHHHHCCCHHHH
T ss_conf 869964677149999844868999
No 91
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=97.07 E-value=0.0044 Score=37.94 Aligned_cols=92 Identities=14% Similarity=0.146 Sum_probs=53.8
Q ss_pred CCEEEEEECCCCHHHHHHHHHHHHCCCCEEEEEEEECCC-------CCC-EEEECCCCEEE--EEECCHHHHCCCCEEEE
Q ss_conf 961799981667789999999974499807899997476-------587-56002781589--98779436318847860
Q gi|254780307|r 1 MTFKVAVVGATGNVGREMLNIICERGFPISEVVALASER-------SAG-TKVPFGKETID--VQDVKSYDFSDTDICLM 70 (335)
Q Consensus 1 M~~kvaIiGatG~vG~el~~lL~~~~~p~~~l~~~~s~~-------~~G-~~i~~~~~~~~--~~~~~~~~~~~~Divf~ 70 (335)
|+|||+|+|+ |-+|.-+--.|.+.++ ++.++.... ..| -.+...+.... +....+.....+|++|+
T Consensus 1 m~MkI~IiGa-GAiG~~~a~~L~~ag~---dV~lv~r~~~~~~~~~~~g~~~~~~~~~~~~~~v~~~~~~~~~~~D~viv 76 (305)
T PRK05708 1 MSMTWHILGA-GSLGSLWACRLARAGL---PVRLILRDRQRLAAYQQAGGLTLVEQGQASLYAIPAETADAPEPIHRLLV 76 (305)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCCC---CEEEEEECHHHHHHHHHCCCEEEEECCCEEEEECCCCCCCCCCCCCEEEE
T ss_conf 9988999882-3999999999984899---73999947899999997899899868955787404657665788778999
Q ss_pred CCCHHHHHHHHHHH---CCCCEEEEECCC
Q ss_conf 68758999999750---456517996145
Q gi|254780307|r 71 SAGHAVSSQMSPKI---AANGCIVIDNSS 96 (335)
Q Consensus 71 a~p~~~s~~~~~~~---~~~g~~VIDlS~ 96 (335)
|+-.-...+..+.+ ...+..||.+-.
T Consensus 77 avK~~~~~~a~~~l~~~l~~~t~Iv~lQN 105 (305)
T PRK05708 77 ACKAYDAEPAVASLAHRLAPGAELLLLQN 105 (305)
T ss_pred EECCCCHHHHHHHHHHHCCCCCEEEEECC
T ss_conf 80425689999998864499958999437
No 92
>PRK05442 malate dehydrogenase; Provisional
Probab=97.06 E-value=0.0042 Score=38.10 Aligned_cols=73 Identities=23% Similarity=0.342 Sum_probs=44.7
Q ss_pred CC--EEEEEECCCCHHHHHHHHHHHHC----CCCEEEEEEEECCCC----CCEEEECCC------CEEEEEECCHHHHCC
Q ss_conf 96--17999816677899999999744----998078999974765----875600278------158998779436318
Q gi|254780307|r 1 MT--FKVAVVGATGNVGREMLNIICER----GFPISEVVALASERS----AGTKVPFGK------ETIDVQDVKSYDFSD 64 (335)
Q Consensus 1 M~--~kvaIiGatG~vG~el~~lL~~~----~~p~~~l~~~~s~~~----~G~~i~~~~------~~~~~~~~~~~~~~~ 64 (335)
|+ +||+|+||+|.+|.-|+-+|..- ....++|+++..+.. .|......+ +...+.+=..++|++
T Consensus 1 m~~p~kV~I~GAaG~ig~~l~~~la~g~l~g~~~~v~l~L~Di~~~~~~l~G~ameL~d~a~p~l~~v~~~~~~~~a~~~ 80 (325)
T PRK05442 1 MKAPVRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEIPQAQKALKGVVMELEDCAFPLLAGVVITDDPKVAFKD 80 (325)
T ss_pred CCCCEEEEEECCCCHHHHHHHHHHHCHHHCCCCCCEEEEEECCCCCCCCCCEEEEEHHCCCCCCCCCEEEECCHHHHHCC
T ss_conf 99972999988886888999999866132089984699996577766655667734211675444876850887898379
Q ss_pred CCEEEECCC
Q ss_conf 847860687
Q gi|254780307|r 65 TDICLMSAG 73 (335)
Q Consensus 65 ~Divf~a~p 73 (335)
+|+|+...+
T Consensus 81 aDvviitag 89 (325)
T PRK05442 81 ADVALLVGA 89 (325)
T ss_pred CCEEEECCC
T ss_conf 988998078
No 93
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=96.99 E-value=0.0045 Score=37.88 Aligned_cols=89 Identities=22% Similarity=0.369 Sum_probs=50.9
Q ss_pred EEEEEECCCCHHHHHHHHHHHHCCCCEEEEEEEECCCC------CCEE-EEC---------CCCE--EEEEECCHHHHCC
Q ss_conf 17999816677899999999744998078999974765------8756-002---------7815--8998779436318
Q gi|254780307|r 3 FKVAVVGATGNVGREMLNIICERGFPISEVVALASERS------AGTK-VPF---------GKET--IDVQDVKSYDFSD 64 (335)
Q Consensus 3 ~kvaIiGatG~vG~el~~lL~~~~~p~~~l~~~~s~~~------~G~~-i~~---------~~~~--~~~~~~~~~~~~~ 64 (335)
|||+|+| |||||...--+|.+++| ++..+.-..+ .|+. |.. +... +....-......+
T Consensus 1 MkI~viG-tGYVGLv~g~~lA~~GH---eVv~vDid~~KV~~ln~g~~PI~EpgLe~ll~~~~~~gRl~fTtd~~~a~~~ 76 (414)
T COG1004 1 MKITVIG-TGYVGLVTGACLAELGH---EVVCVDIDESKVELLNKGISPIYEPGLEELLKENLASGRLRFTTDYEEAVKD 76 (414)
T ss_pred CCEEEEC-CCHHHHHHHHHHHHCCC---EEEEEECCHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCCEEEECCHHHHHHC
T ss_conf 9158988-85568878999987098---4899957889999986799997670589999846235727987478889625
Q ss_pred CCEEEECCCHH--------------HHHHHHHHHCCCCEEEEECCC
Q ss_conf 84786068758--------------999999750456517996145
Q gi|254780307|r 65 TDICLMSAGHA--------------VSSQMSPKIAANGCIVIDNSS 96 (335)
Q Consensus 65 ~Divf~a~p~~--------------~s~~~~~~~~~~g~~VIDlS~ 96 (335)
.|++|.|+|.. +++++.+.+.+. +.||.-|.
T Consensus 77 adv~fIavgTP~~~dg~aDl~~V~ava~~i~~~~~~~-~vvV~KST 121 (414)
T COG1004 77 ADVVFIAVGTPPDEDGSADLSYVEAVAKDIGEILDGK-AVVVIKST 121 (414)
T ss_pred CCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCC-EEEEECCC
T ss_conf 9779997489999889732899999999998626787-39998488
No 94
>PTZ00325 malate dehydrogenase; Provisional
Probab=96.98 E-value=0.002 Score=40.08 Aligned_cols=70 Identities=21% Similarity=0.333 Sum_probs=40.2
Q ss_pred CCEEEEEECCCCHHHHHHHHHHHHCCCCEE-EEEEEECCCCCCEEEECCC--CEE---EEEEC-CHHHHCCCCEEEECCC
Q ss_conf 961799981667789999999974499807-8999974765875600278--158---99877-9436318847860687
Q gi|254780307|r 1 MTFKVAVVGATGNVGREMLNIICERGFPIS-EVVALASERSAGTKVPFGK--ETI---DVQDV-KSYDFSDTDICLMSAG 73 (335)
Q Consensus 1 M~~kvaIiGatG~vG~el~~lL~~~~~p~~-~l~~~~s~~~~G~~i~~~~--~~~---~~~~~-~~~~~~~~Divf~a~p 73 (335)
|. ||+|+||+|.||..+.-+|..+ +.. ||.++.-.+..|....... ... .+..- ..+.++++|+|+.+++
T Consensus 1 m~-KV~IIGA~G~VG~s~A~~l~~~--~~~~elvL~Di~~a~g~a~Dl~~~~~~~~~~~~~~~~~~e~~~~aDIVVitaG 77 (313)
T PTZ00325 1 MF-KVAVLGAAGGIGQPLSLLLKRN--PYVSTLSLYDIVGAPGVAADLSHIPSPAKVTGYAKGELHKAVDGADVVLIVAG 77 (313)
T ss_pred CC-EEEEECCCCHHHHHHHHHHHHC--CCCCEEEEEECCCCHHHHHHHHCCCCCCCCCEECCCCHHHHHCCCCEEEECCC
T ss_conf 93-8999899986999999999838--99777999808972668988867555356654527988898489989998889
No 95
>KOG1502 consensus
Probab=96.98 E-value=0.0016 Score=40.62 Aligned_cols=95 Identities=21% Similarity=0.260 Sum_probs=52.3
Q ss_pred CCEEEEEECCCCHHHHHHHHHHHHCCCCEEEEEEEECCCCCCE--------EEECCCCEEE--EEECC---HH--HHCCC
Q ss_conf 9617999816677899999999744998078999974765875--------6002781589--98779---43--63188
Q gi|254780307|r 1 MTFKVAVVGATGNVGREMLNIICERGFPISEVVALASERSAGT--------KVPFGKETID--VQDVK---SY--DFSDT 65 (335)
Q Consensus 1 M~~kvaIiGatG~vG~el~~lL~~~~~p~~~l~~~~s~~~~G~--------~i~~~~~~~~--~~~~~---~~--~~~~~ 65 (335)
++++|+|-|||||+|..++++|.+++|-+ .. +-|+.++ .++..++.+. ..|+. .+ .+++|
T Consensus 5 ~~~~VcVTGAsGfIgswivk~LL~rGY~V---~g--tVR~~~~~k~~~~L~~l~~a~~~l~l~~aDL~d~~sf~~ai~gc 79 (327)
T KOG1502 5 EGKKVCVTGASGFIGSWIVKLLLSRGYTV---RG--TVRDPEDEKKTEHLRKLEGAKERLKLFKADLLDEGSFDKAIDGC 79 (327)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHHCCCEE---EE--EECCCCHHHHHHHHHHCCCCCCCCEEEECCCCCCCHHHHHHHCC
T ss_conf 87279994882089999999998689989---99--97086305658999865157544258852435513599997078
Q ss_pred CEEEECC-CHHH----------------HHHHHHHHCCCC--EEEEECCCCHHC
Q ss_conf 4786068-7589----------------999997504565--179961451001
Q gi|254780307|r 66 DICLMSA-GHAV----------------SSQMSPKIAANG--CIVIDNSSAWRY 100 (335)
Q Consensus 66 Divf~a~-p~~~----------------s~~~~~~~~~~g--~~VIDlS~~~R~ 100 (335)
|.||-++ |... +..+.+...+.. .+||=-||..-.
T Consensus 80 dgVfH~Asp~~~~~~~~e~~li~pav~Gt~nVL~ac~~~~sVkrvV~TSS~aAv 133 (327)
T KOG1502 80 DGVFHTASPVDFDLEDPEKELIDPAVKGTKNVLEACKKTKSVKRVVYTSSTAAV 133 (327)
T ss_pred CEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCHHHH
T ss_conf 789991766787778747766317888899999998605872269996147871
No 96
>PRK06813 homoserine dehydrogenase; Validated
Probab=96.93 E-value=0.0025 Score=39.48 Aligned_cols=96 Identities=18% Similarity=0.221 Sum_probs=57.5
Q ss_pred CCEEEEEECCCCHHHHHHHHHHHHCC-------CCEEEEEEEECCCCC-----CEEEE----CCCCEEEEE---ECCHHH
Q ss_conf 96179998166778999999997449-------980789999747658-----75600----278158998---779436
Q gi|254780307|r 1 MTFKVAVVGATGNVGREMLNIICERG-------FPISEVVALASERSA-----GTKVP----FGKETIDVQ---DVKSYD 61 (335)
Q Consensus 1 M~~kvaIiGatG~vG~el~~lL~~~~-------~p~~~l~~~~s~~~~-----G~~i~----~~~~~~~~~---~~~~~~ 61 (335)
|++||+|+|. |.||+.++++|.++. --.+++..+++++.. |-.+. .......+. +...+.
T Consensus 1 m~i~I~l~G~-G~VG~~~~~~l~~~~~~l~~~~g~~l~i~~i~~s~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~ 79 (341)
T PRK06813 1 MKIKVVLSGY-GTVGREFIKLLNEKYLYINETYGIDLVVSGVLGRNVAIHNEDGLSIHHLLRYGGGSAAIEKYIEHHPEE 79 (341)
T ss_pred CEEEEEEECC-CHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCHHCCCCCCCHHHHHHCCCCCHHHHHHHHHCHHH
T ss_conf 9602999953-889999999999999999997499779999996860113766888789875035302355555423466
Q ss_pred ----HCCCCEEEECCCH-----HHHHHHHHHHCCCCEEEEECCCC
Q ss_conf ----3188478606875-----89999997504565179961451
Q gi|254780307|r 62 ----FSDTDICLMSAGH-----AVSSQMSPKIAANGCIVIDNSSA 97 (335)
Q Consensus 62 ----~~~~Divf~a~p~-----~~s~~~~~~~~~~g~~VIDlS~~ 97 (335)
....|+++-|++. +.+.++...+.++|+.||...-.
T Consensus 80 ~~~~~~~~~i~vd~t~~~~~~~~~a~~~i~~al~~g~~VVTANK~ 124 (341)
T PRK06813 80 RATDNISGTVLVESTVTNLKDGNPGKQYIKQAIEKQMDIVAISKG 124 (341)
T ss_pred HHCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHCCCCEEECCHH
T ss_conf 630355676699911221357645899999999729968932747
No 97
>PRK05086 malate dehydrogenase; Provisional
Probab=96.88 E-value=0.0041 Score=38.12 Aligned_cols=70 Identities=26% Similarity=0.481 Sum_probs=38.6
Q ss_pred EEEEEECCCCHHHHHHHHHHHHCCCCE-EEEEEEECCC-CCCEEEECCC--CEEE---EEECC-HHHHCCCCEEEECCC
Q ss_conf 179998166778999999997449980-7899997476-5875600278--1589---98779-436318847860687
Q gi|254780307|r 3 FKVAVVGATGNVGREMLNIICERGFPI-SEVVALASER-SAGTKVPFGK--ETID---VQDVK-SYDFSDTDICLMSAG 73 (335)
Q Consensus 3 ~kvaIiGatG~vG~el~~lL~~~~~p~-~~l~~~~s~~-~~G~~i~~~~--~~~~---~~~~~-~~~~~~~Divf~a~p 73 (335)
|||+|+||+|.||+-+--+|..+ .+. -||.++.... ..|+.+.... .... +..-+ .++++++|+|+.+++
T Consensus 1 mKV~IiGA~G~VG~s~A~~l~~~-~~~~~el~L~Di~~~~~G~alDL~h~~~~~~~~~~~~~~~~~~l~~adiVvitAG 78 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQ-LPAGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDPTPALEGADVVLISAG 78 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHHC-CCCCCEEEEECCCCCCCCHHHHHHCCCCCCCCCEEECCCHHHHHCCCCEEEECCC
T ss_conf 98999989986999999999828-9877749997588886105656547875466534616986787179999998789
No 98
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=96.86 E-value=0.0029 Score=39.06 Aligned_cols=159 Identities=11% Similarity=0.171 Sum_probs=77.6
Q ss_pred EEEEEECCCCHHHHHHHHHHHHC-CCCEEEEEEEECCCCCCEEEECCCCEEEEEECC--HHHHCCCCEEEECCCHHHHHH
Q ss_conf 17999816677899999999744-998078999974765875600278158998779--436318847860687589999
Q gi|254780307|r 3 FKVAVVGATGNVGREMLNIICER-GFPISEVVALASERSAGTKVPFGKETIDVQDVK--SYDFSDTDICLMSAGHAVSSQ 79 (335)
Q Consensus 3 ~kvaIiGatG~vG~el~~lL~~~-~~p~~~l~~~~s~~~~G~~i~~~~~~~~~~~~~--~~~~~~~Divf~a~p~~~s~~ 79 (335)
.||+++|+ |.-|+.+++=|.+. ..+..++. +.+++..-+ +....+.+.+.... ......+|++|+|.+.....+
T Consensus 5 ~kI~fIG~-GnMg~Aii~gll~~~~~~~~~i~-v~~~~~~~~-~~~l~~~~~i~~~~~~~~~~~~~d~IilavKP~~~~~ 81 (245)
T PRK07634 5 HRILFIGA-GRMAEAIFSGLLKTSKEYIEEII-VSNRSNVEK-LDQLQARYNVSTTTDWKQHVTSVDTIVLAMPPSAHEE 81 (245)
T ss_pred CCEEEECC-CHHHHHHHHHHHHCCCCCCCEEE-EECCCCHHH-HHHHHHHCCCEECCCHHHHHHHCCEEEEEECCHHHHH
T ss_conf 91999875-89999999999977999960599-969999999-9999997197422777999855999999989174999
Q ss_pred HHHHHCC--CCEEEEECCCCHHCC-------CCCCC--CCCCHHHHHHCCCCCCCEECCCCCCCCCCCCCCCHHHHCCC-
Q ss_conf 9975045--651799614510011-------21112--36410111110333431212676432221112200110178-
Q gi|254780307|r 80 MSPKIAA--NGCIVIDNSSAWRYD-------SDVPL--IVPEVNPQTISLASRKNIIANPNCSTIQLVVALKPLHDLAM- 147 (335)
Q Consensus 80 ~~~~~~~--~g~~VIDlS~~~R~~-------~d~p~--~lPein~~~i~~~~~~~~VanPgC~at~~~l~L~PL~~~~~- 147 (335)
+.+.+.. .+..||+..+--..+ .+.+. ++|-+.-. +...-. -+..+++|....... +.-|++..+
T Consensus 82 vl~~i~~~~~~~~iISi~AGi~i~~l~~~l~~~~~v~R~MPN~~~~-v~~g~t-~~~~~~~~~~~~~~~-v~~lf~~~G~ 158 (245)
T PRK07634 82 LLAELSPLLSNQLVVTVAAGIGPSYLEERLPKGTPVAWIMPNTAAE-IGKSIS-LYTMGQFVNETHQET-LQLLLRGIGT 158 (245)
T ss_pred HHHHHHHHHCCCEEEEEECCCCHHHHHHHCCCCCEEEEECCCHHHH-HCCCCE-EEECCCCCCHHHHHH-HHHHHHCCCE
T ss_conf 9999877606988999817998999998748997289945857489-758818-985388799999999-9999862854
Q ss_pred C---CCEEEEECCCCCCCCCCCC
Q ss_conf 7---4114652152211232110
Q gi|254780307|r 148 I---KRVVVTTYQSVSGAGKKGI 167 (335)
Q Consensus 148 i---~~v~v~s~~g~SGaG~~~~ 167 (335)
+ +.=.++..+++||.|=..+
T Consensus 159 ~~~v~E~~~d~~TalsGSGPAy~ 181 (245)
T PRK07634 159 SQLCTEEEVHQLTAVTGSAPAFL 181 (245)
T ss_pred EEEECCCCCCCEEECCCCCHHHH
T ss_conf 99976412462444367709999
No 99
>pfam00056 Ldh_1_N lactate/malate dehydrogenase, NAD binding domain. L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate. The enzyme participates in the citric acid cycle. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. N-terminus (this family) is a Rossmann NAD-binding fold. C-terminus is an unusual alpha+beta fold.
Probab=96.80 E-value=0.003 Score=38.98 Aligned_cols=70 Identities=29% Similarity=0.409 Sum_probs=42.2
Q ss_pred EEEEEECCCCHHHHHHHHHHHHCCCCEEEEEEEECCC--CCCEEEE------CCCCEEEEEECCHHHHCCCCEEEECCC
Q ss_conf 1799981667789999999974499807899997476--5875600------278158998779436318847860687
Q gi|254780307|r 3 FKVAVVGATGNVGREMLNIICERGFPISEVVALASER--SAGTKVP------FGKETIDVQDVKSYDFSDTDICLMSAG 73 (335)
Q Consensus 3 ~kvaIiGatG~vG~el~~lL~~~~~p~~~l~~~~s~~--~~G~~i~------~~~~~~~~~~~~~~~~~~~Divf~a~p 73 (335)
|||+|+||.|.||..+.-.|..++. ..||.++.-.+ ..|+... +......+..-+..+++++|+++.+.+
T Consensus 1 mKV~IIGagg~VG~~~A~~l~~~~l-~~elvL~D~~~~~a~g~alDl~~~~~~~~~~~~~~~~~~~~~~daDiVVitaG 78 (142)
T pfam00056 1 VKVAVVGAGGGVGSSLAFALALQGL-ADELVLVDINKDKAEGVAMDLSHGSTFLSVPGIVGGDDYEALKDADVVVITAG 78 (142)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCC-CCEEEEECCCCCCCHHHHHHHHCCCCCCCCCEEECCCCHHHHCCCCEEEEECC
T ss_conf 9899989877899999999974796-63478850577641179999861443478876974883888378999998157
No 100
>pfam10727 Rossmann-like Rossmann-like domain. This family of proteins contain a Rossmann-like domain.
Probab=96.78 E-value=0.0017 Score=40.42 Aligned_cols=90 Identities=19% Similarity=0.230 Sum_probs=59.8
Q ss_pred EEECCCCHHHHHHHHHHHHCCCCEEEEEEEECCCCCCEEEECCCCEEEEEECCHHHHCCCCEEEECCCHHHHHHHHHHHC
Q ss_conf 99816677899999999744998078999974765875600278158998779436318847860687589999997504
Q gi|254780307|r 6 AVVGATGNVGREMLNIICERGFPISEVVALASERSAGTKVPFGKETIDVQDVKSYDFSDTDICLMSAGHAVSSQMSPKIA 85 (335)
Q Consensus 6 aIiGatG~vG~el~~lL~~~~~p~~~l~~~~s~~~~G~~i~~~~~~~~~~~~~~~~~~~~Divf~a~p~~~s~~~~~~~~ 85 (335)
+|||+ |-||..|-+.|.+.+|+..-+... |+.+.-+.-..... .+.+. ++-...+|++|+|.|++.-.+++..+.
T Consensus 1 GiIGa-GrvG~~L~~al~~aGh~v~gv~sr-s~~s~~~a~~~~~~--~~~~~-~ev~~~adlv~itvPDd~I~~vv~~la 75 (111)
T pfam10727 1 GIISA-GRVGVALGEALERAGHVVHAISAI-SDASRERAERRLDS--PVLPI-PDVIRRAELVVLAVPDAELPGLVEGLA 75 (111)
T ss_pred CCCCC-CHHHHHHHHHHHHCCCEEEEEEEC-CHHHHHHHHHHCCC--CCCCH-HHHHHHCCEEEEECCHHHHHHHHHHHH
T ss_conf 94376-577999999999789828999838-98899999986699--76795-898976799999897888999999998
Q ss_pred C---CCEEEEECCCCHHC
Q ss_conf 5---65179961451001
Q gi|254780307|r 86 A---NGCIVIDNSSAWRY 100 (335)
Q Consensus 86 ~---~g~~VIDlS~~~R~ 100 (335)
+ .|..|+-.|+++-.
T Consensus 76 ~~~~~GqiV~HtSGa~g~ 93 (111)
T pfam10727 76 ATVRRGQIVAHTSGAHGI 93 (111)
T ss_pred HHCCCCCEEEECCCCCHH
T ss_conf 326799799986687507
No 101
>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=96.74 E-value=0.0042 Score=38.05 Aligned_cols=41 Identities=27% Similarity=0.404 Sum_probs=29.6
Q ss_pred EEEEEECCCCHHHHHHHHHHHHCCCCEEEEEEEECCCCCCEE
Q ss_conf 179998166778999999997449980789999747658756
Q gi|254780307|r 3 FKVAVVGATGNVGREMLNIICERGFPISEVVALASERSAGTK 44 (335)
Q Consensus 3 ~kvaIiGatG~vG~el~~lL~~~~~p~~~l~~~~s~~~~G~~ 44 (335)
|||+|+||+|.||..+--+|..++ -..||.++.-.+..|+.
T Consensus 1 mKV~IIGA~G~VG~~~A~~l~~~~-~~~elvLiDi~~~~g~a 41 (310)
T cd01337 1 VKVAVLGAAGGIGQPLSLLLKLNP-LVSELALYDIVNTPGVA 41 (310)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCC-CCCEEEEEECCCCHHHH
T ss_conf 989999999818999999997299-97769998277426675
No 102
>cd00704 MDH Malate dehydrogenase. Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=96.72 E-value=0.0035 Score=38.54 Aligned_cols=71 Identities=17% Similarity=0.267 Sum_probs=42.7
Q ss_pred EEEEEECCCCHHHHHHHHHHHHCC----CCEEEEEEEECCCC----CCEEEEC------CCCEEEEEECCHHHHCCCCEE
Q ss_conf 179998166778999999997449----98078999974765----8756002------781589987794363188478
Q gi|254780307|r 3 FKVAVVGATGNVGREMLNIICERG----FPISEVVALASERS----AGTKVPF------GKETIDVQDVKSYDFSDTDIC 68 (335)
Q Consensus 3 ~kvaIiGatG~vG~el~~lL~~~~----~p~~~l~~~~s~~~----~G~~i~~------~~~~~~~~~~~~~~~~~~Div 68 (335)
|||+|+||+|.+|+-+.-+|...+ .+.+.|+++...+. .|..... ..+...+..=+..+++++|+|
T Consensus 1 ~KV~IiGA~G~IG~~la~~l~~~~l~g~~~~i~l~L~Di~~~~~~~~G~~mdl~~~a~~~~~~v~~~~~~~~~~~~aDvV 80 (323)
T cd00704 1 LHVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIPPAMKALEGVVMELQDCAFPLLKGVVITTDPEEAFKDVDVA 80 (323)
T ss_pred CEEEEECCCCHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHCCCCCCCCEEECCCHHHHHCCCCEE
T ss_conf 98999899978999999999728636998600899975888655531487866534665558748428858983799889
Q ss_pred EECCC
Q ss_conf 60687
Q gi|254780307|r 69 LMSAG 73 (335)
Q Consensus 69 f~a~p 73 (335)
+...+
T Consensus 81 iitaG 85 (323)
T cd00704 81 ILVGA 85 (323)
T ss_pred EECCC
T ss_conf 98278
No 103
>PRK05447 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional
Probab=96.66 E-value=0.0077 Score=36.47 Aligned_cols=40 Identities=28% Similarity=0.531 Sum_probs=31.9
Q ss_pred CCEEEEEECCCCHHHHHHHHHHHHCCCCEEEEEEEECCCCCC
Q ss_conf 961799981667789999999974499807899997476587
Q gi|254780307|r 1 MTFKVAVVGATGNVGREMLNIICERGFPISEVVALASERSAG 42 (335)
Q Consensus 1 M~~kvaIiGatG~vG~el~~lL~~~~~p~~~l~~~~s~~~~G 42 (335)
|+ ||+|+|+||-+|..-++++.++. ..+++..++..++..
T Consensus 1 mk-~i~IlGsTGSIG~~tL~Vi~~~~-~~f~v~~lsa~~n~~ 40 (379)
T PRK05447 1 MK-RITILGSTGSIGTQTLDVIRRHP-DRFRVVALSAGSNVE 40 (379)
T ss_pred CC-EEEEECCCCHHHHHHHHHHHHCC-CCCEEEEEEECCCHH
T ss_conf 97-89998569588899999999586-875899999289799
No 104
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=96.66 E-value=0.0079 Score=36.42 Aligned_cols=95 Identities=14% Similarity=0.160 Sum_probs=57.0
Q ss_pred CCEEEEEECCCCHHHHHHHHHHHHCCC-CEEEEEEEECCCCCCEEEECCCC---EEEEEECCHHHHCCCCEEEECCCHHH
Q ss_conf 961799981667789999999974499-80789999747658756002781---58998779436318847860687589
Q gi|254780307|r 1 MTFKVAVVGATGNVGREMLNIICERGF-PISEVVALASERSAGTKVPFGKE---TIDVQDVKSYDFSDTDICLMSAGHAV 76 (335)
Q Consensus 1 M~~kvaIiGatG~vG~el~~lL~~~~~-p~~~l~~~~s~~~~G~~i~~~~~---~~~~~~~~~~~~~~~Divf~a~p~~~ 76 (335)
|+ ||+++|+ |.-|+.+++-|.+++. +..++.. .+. +..+......+ ...+.+ .++....+|++|+|.+...
T Consensus 1 M~-kI~fIG~-GnMg~Aii~Gll~~~~~~~~~i~v-~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~dvIilaVKP~~ 75 (275)
T PRK06928 1 ME-KIGFIGY-GSMADMIATKLLETEVITPEEIIL-YSR-SENEHFKQLYDKYPTVALAS-NEELFTKCDHSFICVPPLA 75 (275)
T ss_pred CC-EEEEECC-CHHHHHHHHHHHHCCCCCCCEEEE-ECC-CCHHHHHHHHHHCCCEEECC-HHHHHHHCCEEEEEECHHH
T ss_conf 98-8999867-899999999999789999636999-789-93899999998749536377-7999854998999978587
Q ss_pred HHHHHHHHC---CCCEEEEECCCCHHC
Q ss_conf 999997504---565179961451001
Q gi|254780307|r 77 SSQMSPKIA---ANGCIVIDNSSAWRY 100 (335)
Q Consensus 77 s~~~~~~~~---~~g~~VIDlS~~~R~ 100 (335)
..++.+.+. ..+..||+..+-..+
T Consensus 76 ~~~vl~~i~~~~~~~~~iISi~AGi~i 102 (275)
T PRK06928 76 VLPLMKDCAPVLTPDRHVVSIAAGVSL 102 (275)
T ss_pred HHHHHHHHHHHCCCCCEEEEECCCCCH
T ss_conf 999999976532799689995699989
No 105
>PRK07680 late competence protein ComER; Validated
Probab=96.65 E-value=0.0088 Score=36.13 Aligned_cols=95 Identities=13% Similarity=0.210 Sum_probs=56.4
Q ss_pred EEEEEECCCCHHHHHHHHHHHHCC-CCEEEEEEEECCCCCCEEEECCCC--EEEEEECCHHHHCCCCEEEECCCHHHHHH
Q ss_conf 179998166778999999997449-980789999747658756002781--58998779436318847860687589999
Q gi|254780307|r 3 FKVAVVGATGNVGREMLNIICERG-FPISEVVALASERSAGTKVPFGKE--TIDVQDVKSYDFSDTDICLMSAGHAVSSQ 79 (335)
Q Consensus 3 ~kvaIiGatG~vG~el~~lL~~~~-~p~~~l~~~~s~~~~G~~i~~~~~--~~~~~~~~~~~~~~~Divf~a~p~~~s~~ 79 (335)
|||+++|+ |.-|+.+++=|.+.+ ++..++.. +.++..+......+ .+.+..-..+....+|++|+|.-.....+
T Consensus 1 MkI~fIG~-GnMg~Aii~gl~~~~~~~~~~i~i--~~r~~~~~~~l~~~~~~i~~~~~~~~~~~~~dvIiLaVKPq~~~~ 77 (273)
T PRK07680 1 MNIGFIGT-GNMGTILIEAFLESRAVKPSCLTI--TNRTPAKAYHIKEKYPSIHVAKTIEEVIEQSELIFICVKPLDIYP 77 (273)
T ss_pred CEEEEECC-CHHHHHHHHHHHHCCCCCCCEEEE--ECCCHHHHHHHHHHCCCEEEECCHHHHHHCCCEEEEECCHHHHHH
T ss_conf 98999876-999999999999779989456999--889989999999876990886888999840998999648888999
Q ss_pred HHHHHC---CCCEEEEECCCCHHC
Q ss_conf 997504---565179961451001
Q gi|254780307|r 80 MSPKIA---ANGCIVIDNSSAWRY 100 (335)
Q Consensus 80 ~~~~~~---~~g~~VIDlS~~~R~ 100 (335)
+.+.+. ..+..||+..+-..+
T Consensus 78 vl~~i~~~~~~~~~iISi~AGisi 101 (273)
T PRK07680 78 LLKKLAPHFSDEKCLVSITSPISP 101 (273)
T ss_pred HHHHHHHHCCCCCEEEEECCCCCH
T ss_conf 999988634788489995588889
No 106
>COG1091 RfbD dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane]
Probab=96.61 E-value=0.0074 Score=36.60 Aligned_cols=84 Identities=20% Similarity=0.357 Sum_probs=50.9
Q ss_pred EEEEEECCCCHHHHHHHHHHHHCCCCEEEEEEEECCCCCCEEEECCCCEEEEEECCHH--HHC--CCCEEEECCC-----
Q ss_conf 1799981667789999999974499807899997476587560027815899877943--631--8847860687-----
Q gi|254780307|r 3 FKVAVVGATGNVGREMLNIICERGFPISEVVALASERSAGTKVPFGKETIDVQDVKSY--DFS--DTDICLMSAG----- 73 (335)
Q Consensus 3 ~kvaIiGatG~vG~el~~lL~~~~~p~~~l~~~~s~~~~G~~i~~~~~~~~~~~~~~~--~~~--~~Divf~a~p----- 73 (335)
|||.|.|++|.+|.+|.+.|. +..++..++..+ +.+.+.+.. -+. .-|+|+-|+.
T Consensus 1 M~iLi~G~~GqLG~~L~~~l~----~~~~v~a~~~~~------------~Ditd~~~v~~~i~~~~PDvVIn~AAyt~vD 64 (281)
T COG1091 1 MKILITGANGQLGTELRRALP----GEFEVIATDRAE------------LDITDPDAVLEVIRETRPDVVINAAAYTAVD 64 (281)
T ss_pred CCEEEECCCCHHHHHHHHHHC----CCCEEEECCCCC------------CCCCCHHHHHHHHHHHCCCEEEECCCCCCCC
T ss_conf 958997698767999999717----784399515765------------5556858999999861999899873203654
Q ss_pred -------------HHHHHHHHHHHCCCCEEEEECCCCHHCCC
Q ss_conf -------------58999999750456517996145100112
Q gi|254780307|r 74 -------------HAVSSQMSPKIAANGCIVIDNSSAWRYDS 102 (335)
Q Consensus 74 -------------~~~s~~~~~~~~~~g~~VIDlS~~~R~~~ 102 (335)
...+..++....+.|.++|-.|+||=++-
T Consensus 65 ~aE~~~e~A~~vNa~~~~~lA~aa~~~ga~lVhiSTDyVFDG 106 (281)
T COG1091 65 KAESEPELAFAVNATGAENLARAAAEVGARLVHISTDYVFDG 106 (281)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCEEECC
T ss_conf 133898997776779999999999971976999634457438
No 107
>pfam02629 CoA_binding CoA binding domain. This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases.
Probab=96.55 E-value=0.019 Score=34.12 Aligned_cols=84 Identities=23% Similarity=0.275 Sum_probs=53.4
Q ss_pred CEEEEEECCCCHHHHHHHHHHHHCCCCEEEEEEE--ECCCCCCEEEECCCCEEEEE-ECCHHHH-CCCCEEEECCCHHHH
Q ss_conf 6179998166778999999997449980789999--74765875600278158998-7794363-188478606875899
Q gi|254780307|r 2 TFKVAVVGATGNVGREMLNIICERGFPISEVVAL--ASERSAGTKVPFGKETIDVQ-DVKSYDF-SDTDICLMSAGHAVS 77 (335)
Q Consensus 2 ~~kvaIiGatG~vG~el~~lL~~~~~p~~~l~~~--~s~~~~G~~i~~~~~~~~~~-~~~~~~~-~~~Divf~a~p~~~s 77 (335)
..|++|+|+++. |+.+..-..++ -.+.+..+ .+++..|+.+. + +.+. ++++..- .++|++.+|.|...+
T Consensus 3 ~~~v~liG~g~l-G~al~~~~~~~--~~~~i~~vfdv~p~~~G~~i~--g--ipv~~~l~~~~~~~~idiaii~VP~~~a 75 (96)
T pfam02629 3 DTKVAVIGASGL-GIQGLYHFIQL--LGYGIKMVFGVNPRKGGTEVG--G--IPVYKSVDELEEDTGVDVAVITVPAPFA 75 (96)
T ss_pred CCEEEEECCCCC-HHHHHHHHHHH--HCCCEEEEEECCCCCCCCEEC--C--EEEECCHHHHHHCCCCCEEEEEECHHHH
T ss_conf 774999998982-78887768877--148618998069242775888--9--9843108777415588789999478998
Q ss_pred HHHHHHHCCCCEEEE
Q ss_conf 999975045651799
Q gi|254780307|r 78 SQMSPKIAANGCIVI 92 (335)
Q Consensus 78 ~~~~~~~~~~g~~VI 92 (335)
++.+.++.++|.+.|
T Consensus 76 ~~~~~~~v~~GIk~i 90 (96)
T pfam02629 76 QEAIDELVDAGIKGI 90 (96)
T ss_pred HHHHHHHHHCCCCEE
T ss_conf 999999998699899
No 108
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=96.47 E-value=0.03 Score=32.87 Aligned_cols=108 Identities=19% Similarity=0.281 Sum_probs=68.5
Q ss_pred EEEEECCCCHHHHHHHHHHHHCCCCEEEEEE-------------EECCCCCCEEEE--------CCCCEEEEE----EC-
Q ss_conf 7999816677899999999744998078999-------------974765875600--------278158998----77-
Q gi|254780307|r 4 KVAVVGATGNVGREMLNIICERGFPISEVVA-------------LASERSAGTKVP--------FGKETIDVQ----DV- 57 (335)
Q Consensus 4 kvaIiGatG~vG~el~~lL~~~~~p~~~l~~-------------~~s~~~~G~~i~--------~~~~~~~~~----~~- 57 (335)
||.|+|+ |-.|.|+++.|...++-.+.+.- +.+++..|+.-. ....+..+. .+
T Consensus 1 KVlvvGa-GglGce~~k~La~~Gvg~i~iiD~D~Ie~SNLnRQfLf~~~dvGk~Ka~vAa~~l~~~Np~~~I~~~~~~v~ 79 (234)
T cd01484 1 KVLLVGA-GGIGCELLKNLALMGFGQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKSEVAAEAVNDRNPNCKVVPYQNKVG 79 (234)
T ss_pred CEEEECC-CHHHHHHHHHHHHCCCCEEEEECCCEECCCCCCHHHCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEECCCC
T ss_conf 9899948-887999999999839986999759900567701302446442688229999999998789977999805568
Q ss_pred -----CHHHHCCCCEEEECCCHHHHHHHHHHH-CCCCEEEEECCCCHHCCCCCCCCCCCHHH
Q ss_conf -----943631884786068758999999750-45651799614510011211123641011
Q gi|254780307|r 58 -----KSYDFSDTDICLMSAGHAVSSQMSPKI-AANGCIVIDNSSAWRYDSDVPLIVPEVNP 113 (335)
Q Consensus 58 -----~~~~~~~~Divf~a~p~~~s~~~~~~~-~~~g~~VIDlS~~~R~~~d~p~~lPein~ 113 (335)
+..-|++.|+|+.|+.+-.++.++.+. ...++..||-+. ..++-.+-.++|...+
T Consensus 80 ~e~~~~~~f~~~~DvVi~alDN~~aR~~vN~~c~~~~~PLIegGt-~G~~Gqv~~IiP~~T~ 140 (234)
T cd01484 80 PEQDFNDTFFEQFHIIVNALDNIIARRYVNGMLIFLIVPLIESGT-EGFKGNAQVILPGMTE 140 (234)
T ss_pred CCCCCCHHHHHHCCEEEECCCCHHHHHHHHHHHHHHCCCEEEECC-CCCEEEEEEEECCCCC
T ss_conf 621057988852999998857888999999999980998597202-4614799998389977
No 109
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=96.47 E-value=0.047 Score=31.74 Aligned_cols=112 Identities=16% Similarity=0.221 Sum_probs=65.0
Q ss_pred EEEEECCCCHHHHHHHHHHHHCCCCE-----EEEEEEECC-CCCCEEE-----------EC-CC----CEEEEEECCHHH
Q ss_conf 79998166778999999997449980-----789999747-6587560-----------02-78----158998779436
Q gi|254780307|r 4 KVAVVGATGNVGREMLNIICERGFPI-----SEVVALASE-RSAGTKV-----------PF-GK----ETIDVQDVKSYD 61 (335)
Q Consensus 4 kvaIiGatG~vG~el~~lL~~~~~p~-----~~l~~~~s~-~~~G~~i-----------~~-~~----~~~~~~~~~~~~ 61 (335)
||+|+|+ |-=|..|-.+|.+..++. -++..+.-+ ...++.+ .| .+ +.+....--.+.
T Consensus 1 KI~ViGa-GawGTALA~~La~ng~~~~~~~~~~V~lw~r~~~~~~~~~~~~in~~~~N~~yLp~i~Lp~~i~~t~dl~~~ 79 (342)
T TIGR03376 1 RVAVVGS-GNWGTAIAKIVAENARALPELFEESVRMWVFEEEIEGRNLTEIINTTHENVKYLPGIKLPANLVAVPDLVEA 79 (342)
T ss_pred CEEEECC-CHHHHHHHHHHHHCCCCCCCCCCCEEEEEEECHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEECCHHHH
T ss_conf 9899877-999999999999748865455786379997232210046899997449686779878489860896689999
Q ss_pred HCCCCEEEECCCHHHHHHHHHHH---CCCCEEEEECCCCHHCCCCCCCCCCCHHHHHH
Q ss_conf 31884786068758999999750---45651799614510011211123641011111
Q gi|254780307|r 62 FSDTDICLMSAGHAVSSQMSPKI---AANGCIVIDNSSAWRYDSDVPLIVPEVNPQTI 116 (335)
Q Consensus 62 ~~~~Divf~a~p~~~s~~~~~~~---~~~g~~VIDlS~~~R~~~d~p~~lPein~~~i 116 (335)
+.++|++|+|.|+..-+++.+++ .+.+..+|.++-=+...++-...+.|+-.+.+
T Consensus 80 ~~~ad~ii~avPs~~~r~~~~~l~~~l~~~~~ii~~sKGle~~~~~~~~~seii~e~~ 137 (342)
T TIGR03376 80 AKGADILVFVIPHQFLEGICKQLKGHVKPNARAISCIKGLEVSKDGVKLLSDIIEEEL 137 (342)
T ss_pred HHCCCEEEEECCHHHHHHHHHHHHHHCCCCCEEEEEECCEEECCCCCCCHHHHHHHHH
T ss_conf 8369889996686999999999985458887389842344436998311999999985
No 110
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=96.45 E-value=0.058 Score=31.15 Aligned_cols=92 Identities=21% Similarity=0.325 Sum_probs=54.5
Q ss_pred CEEEEEECCCCHHHHHHHHHHHHCCCCEEEEEEEECCC-----CCCEEEECCCCEEEEEE----CCHHHHCCCCEEEECC
Q ss_conf 61799981667789999999974499807899997476-----58756002781589987----7943631884786068
Q gi|254780307|r 2 TFKVAVVGATGNVGREMLNIICERGFPISEVVALASER-----SAGTKVPFGKETIDVQD----VKSYDFSDTDICLMSA 72 (335)
Q Consensus 2 ~~kvaIiGatG~vG~el~~lL~~~~~p~~~l~~~~s~~-----~~G~~i~~~~~~~~~~~----~~~~~~~~~Divf~a~ 72 (335)
++||+|+|+ |-+|.-+--.|.+.++ ++.++.-++ ..|-.+.-...+..+.. -+..+...+|++|+|+
T Consensus 5 ~~kI~IiGa-GAiG~~~a~~L~~aG~---~V~li~r~~~~ai~~~Gl~i~~~~g~~~~~~~~~~~~~~~~~~~D~viv~v 80 (313)
T PRK06249 5 TPRIAIIGT-GAIGGFYGAMLARAGF---DVHFLLRSDYEAVRENGLQVDSVHGDFHLPQVQAYRSAEDMPPCDWVLVGL 80 (313)
T ss_pred CCEEEEECC-CHHHHHHHHHHHHCCC---CEEEEECCHHHHHHHCCEEEEECCCCEEECCCEEECCHHHCCCCCEEEEEC
T ss_conf 888999991-4999999999996699---569996755999986885999669828976840236977839965899953
Q ss_pred CHH---HHHHHHHHHCCCCEEEEECCCC
Q ss_conf 758---9999997504565179961451
Q gi|254780307|r 73 GHA---VSSQMSPKIAANGCIVIDNSSA 97 (335)
Q Consensus 73 p~~---~s~~~~~~~~~~g~~VIDlS~~ 97 (335)
-.- .+.+..+.+...+..|+.+-.-
T Consensus 81 Ks~~~~~~~~~l~~~~~~~t~il~lQNG 108 (313)
T PRK06249 81 KTTANALLAPLIPQVAAPGAKVLLLQNG 108 (313)
T ss_pred CCCCHHHHHHHHHHHCCCCCEEEEECCC
T ss_conf 6677899999878644899589994476
No 111
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=96.36 E-value=0.015 Score=34.64 Aligned_cols=107 Identities=15% Similarity=0.312 Sum_probs=64.3
Q ss_pred EEEEEECCCCHHHHHHHHHHHHCCCCEEEEEEEECCCCCCEEEECCCC------EEEE----EE-CC-HHHHCCCCEEEE
Q ss_conf 179998166778999999997449980789999747658756002781------5899----87-79-436318847860
Q gi|254780307|r 3 FKVAVVGATGNVGREMLNIICERGFPISEVVALASERSAGTKVPFGKE------TIDV----QD-VK-SYDFSDTDICLM 70 (335)
Q Consensus 3 ~kvaIiGatG~vG~el~~lL~~~~~p~~~l~~~~s~~~~G~~i~~~~~------~~~~----~~-~~-~~~~~~~Divf~ 70 (335)
+||+|+|+ |-=|..|-.+|.+++| ++..++-+...-..|....+ ...+ .- .+ ....+++|++++
T Consensus 2 ~kI~ViGa-GswGTALA~~la~ng~---~V~lw~r~~~~~~~i~~~~~N~~yLp~i~lp~~l~at~Dl~~a~~~ad~iv~ 77 (329)
T COG0240 2 MKIAVIGA-GSWGTALAKVLARNGH---EVRLWGRDEEIVAEINETRENPKYLPGILLPPNLKATTDLAEALDGADIIVI 77 (329)
T ss_pred CEEEEECC-CHHHHHHHHHHHHCCC---EEEEEECCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCEEEE
T ss_conf 61899817-8379999999996698---4699962899999997347670105996288632224689999722999999
Q ss_pred CCCHHHHHHHHHHHC---CCCEEEEECCCCHHCCCCCCCCCCCHHHHH
Q ss_conf 687589999997504---565179961451001121112364101111
Q gi|254780307|r 71 SAGHAVSSQMSPKIA---ANGCIVIDNSSAWRYDSDVPLIVPEVNPQT 115 (335)
Q Consensus 71 a~p~~~s~~~~~~~~---~~g~~VIDlS~~~R~~~d~p~~lPein~~~ 115 (335)
+.|+..-+++++++. ..+..+|.++-=+. ++-...+.|+-.+.
T Consensus 78 avPs~~~r~v~~~l~~~l~~~~~iv~~sKGie--~~t~~l~seii~e~ 123 (329)
T COG0240 78 AVPSQALREVLRQLKPLLLKDAIIVSATKGLE--PETGRLLSEIIEEE 123 (329)
T ss_pred ECCHHHHHHHHHHHHHHCCCCCEEEEEECCCC--CCCCCHHHHHHHHH
T ss_conf 78757899999987643367874999744655--88765199999997
No 112
>PRK06444 prephenate dehydrogenase; Provisional
Probab=96.36 E-value=0.012 Score=35.24 Aligned_cols=61 Identities=18% Similarity=0.306 Sum_probs=50.0
Q ss_pred EEEEEECCCCHHHHHHHHHHHHCCCCEEEEEEEECCCCCCEEEECCCCEEEEEECCHHHHCCCCEEEECCCHHHHHHHHH
Q ss_conf 17999816677899999999744998078999974765875600278158998779436318847860687589999997
Q gi|254780307|r 3 FKVAVVGATGNVGREMLNIICERGFPISEVVALASERSAGTKVPFGKETIDVQDVKSYDFSDTDICLMSAGHAVSSQMSP 82 (335)
Q Consensus 3 ~kvaIiGatG~vG~el~~lL~~~~~p~~~l~~~~s~~~~G~~i~~~~~~~~~~~~~~~~~~~~Divf~a~p~~~s~~~~~ 82 (335)
|+..|+|+-|--|+-|.+.|...+| ++. .++.|++|.|.|=..+.++.+
T Consensus 1 ~~~~iig~~gr~g~~~~~~~~~~g~---~v~----------------------------i~k~D~ifiaVPI~~~~~iI~ 49 (197)
T PRK06444 1 MMEIIIGKNGRLGRVLCSILDDNGL---GVY----------------------------IKKADHAFLSVPIDAALNYIE 49 (197)
T ss_pred CCEEEECCCCCHHHHHHHHHCCCCC---EEE----------------------------ECCCCEEEEEEEHHHHHHHHH
T ss_conf 9169963787166899999703784---789----------------------------727888999824588899998
Q ss_pred HHCCCCEEEEECCCC
Q ss_conf 504565179961451
Q gi|254780307|r 83 KIAANGCIVIDNSSA 97 (335)
Q Consensus 83 ~~~~~g~~VIDlS~~ 97 (335)
+.|..+||.+|-
T Consensus 50 ---~~~~tiiDv~SV 61 (197)
T PRK06444 50 ---SYDNNFVEISSV 61 (197)
T ss_pred ---HCCCEEEEEEEC
T ss_conf ---479738998863
No 113
>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]
Probab=96.34 E-value=0.019 Score=34.16 Aligned_cols=68 Identities=26% Similarity=0.447 Sum_probs=43.9
Q ss_pred EEEEEECCCCHHHHHHHHHHHHCCCCEE-EEEEEECC--CCCCEEEE------CCCCEEEEEE-CCHHHHCCCCEEEECC
Q ss_conf 1799981667789999999974499807-89999747--65875600------2781589987-7943631884786068
Q gi|254780307|r 3 FKVAVVGATGNVGREMLNIICERGFPIS-EVVALASE--RSAGTKVP------FGKETIDVQD-VKSYDFSDTDICLMSA 72 (335)
Q Consensus 3 ~kvaIiGatG~vG~el~~lL~~~~~p~~-~l~~~~s~--~~~G~~i~------~~~~~~~~~~-~~~~~~~~~Divf~a~ 72 (335)
+||+|+|| |.||+-+.-+|..+ ... |+.++.-. ...|.... +...+..+.. -+-.+++++|+|+.++
T Consensus 1 ~KV~viGa-G~VG~s~a~~l~~~--~~~~el~LiDi~~~~~~G~a~DL~~~~~~~~~~~~i~~~~~y~~~~~aDiVvitA 77 (313)
T COG0039 1 MKVAVIGA-GNVGSSLAFLLLLQ--GLGSELVLIDINEEKAEGVALDLSHAAAPLGSDVKITGDGDYEDLKGADIVVITA 77 (313)
T ss_pred CEEEEECC-CHHHHHHHHHHHCC--CCCCEEEEEECCCCCCCCHHCCHHHCCHHCCCCEEEECCCCHHHHCCCCEEEEEC
T ss_conf 93999898-74789999999625--5566599997466656401102533400026761883478702316998999968
Q ss_pred C
Q ss_conf 7
Q gi|254780307|r 73 G 73 (335)
Q Consensus 73 p 73 (335)
+
T Consensus 78 G 78 (313)
T COG0039 78 G 78 (313)
T ss_pred C
T ss_conf 8
No 114
>COG0702 Predicted nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=96.33 E-value=0.013 Score=35.14 Aligned_cols=67 Identities=28% Similarity=0.409 Sum_probs=42.3
Q ss_pred EEEEEECCCCHHHHHHHHHHHHCCCCEEEEEEEECCCCCCEEEECCCCEEEEEECCH-----HHHCCCCEEEECCC
Q ss_conf 179998166778999999997449980789999747658756002781589987794-----36318847860687
Q gi|254780307|r 3 FKVAVVGATGNVGREMLNIICERGFPISEVVALASERSAGTKVPFGKETIDVQDVKS-----YDFSDTDICLMSAG 73 (335)
Q Consensus 3 ~kvaIiGatG~vG~el~~lL~~~~~p~~~l~~~~s~~~~G~~i~~~~~~~~~~~~~~-----~~~~~~Divf~a~p 73 (335)
|+|.|.||||++|+.+++.|.++++ ++..+......-.... .+-+....++.+ .-+.++|.++++.+
T Consensus 1 ~~ilV~GatG~~G~~~~~~L~~~~~---~v~~~~r~~~~~~~~~-~~v~~~~~d~~~~~~l~~~~~G~~~~~~i~~ 72 (275)
T COG0702 1 MKILVTGATGFVGGAVVRELLARGH---EVRAAVRNPEAAAALA-GGVEVVLGDLRDPKSLVAGAKGVDGVLLISG 72 (275)
T ss_pred CCEEEECCCCCHHHHHHHHHHHCCC---EEEEECCCCHHHHHCC-CCCEEECCCCCCCHHHHHHHCCCEEEEEECC
T ss_conf 9389986777579999999997598---6999736822111103-7852884564160779998489417999525
No 115
>pfam01488 Shikimate_DH Shikimate / quinate 5-dehydrogenase. This family contains both shikimate and quinate dehydrogenases. Shikimate 5-dehydrogenase catalyses the conversion of shikimate to 5-dehydroshikimate. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites 3-dehydroquinate and dehydroshikimate.
Probab=96.29 E-value=0.011 Score=35.54 Aligned_cols=94 Identities=17% Similarity=0.346 Sum_probs=57.0
Q ss_pred EEEEEECCCCHHHHHHHHHHHHCCCCEEEEEEEECCCCCCE--EE--ECCCCEEEEEECCHH--HHCCCCEEEECCCHHH
Q ss_conf 17999816677899999999744998078999974765875--60--027815899877943--6318847860687589
Q gi|254780307|r 3 FKVAVVGATGNVGREMLNIICERGFPISEVVALASERSAGT--KV--PFGKETIDVQDVKSY--DFSDTDICLMSAGHAV 76 (335)
Q Consensus 3 ~kvaIiGatG~vG~el~~lL~~~~~p~~~l~~~~s~~~~G~--~i--~~~~~~~~~~~~~~~--~~~~~Divf~a~p~~~ 76 (335)
-|+.|+|+ |-.|+..++-|.+++.. ++.... ++..+ .+ .+++....+.++++. .+..+|++|+|+++..
T Consensus 13 ~~vlVIGa-G~~~~~~~~~L~~~g~~--~i~v~n--Rt~~ka~~la~~~~~~~~~~~~~~~l~~~l~~~DivI~aT~s~~ 87 (134)
T pfam01488 13 KKVLLIGA-GEMARLAAKHLLSKGAK--KITIAN--RTLEKAKELAEEFGGEEVEALPLDELEELLAEADIVISATSAPT 87 (134)
T ss_pred CEEEEECC-CHHHHHHHHHHHHCCCC--EEEEEC--CCHHHHHHHHHHCCCCCEEEEECHHHHHHHHHCCEEEEECCCCC
T ss_conf 98999996-09999999999975998--899954--75789999999849972589851354413631999999259997
Q ss_pred ---HHHHHHHHCCCCEEEEECCCCHHCCC
Q ss_conf ---99999750456517996145100112
Q gi|254780307|r 77 ---SSQMSPKIAANGCIVIDNSSAWRYDS 102 (335)
Q Consensus 77 ---s~~~~~~~~~~g~~VIDlS~~~R~~~ 102 (335)
.++..+.. .....+||++-.-=.+|
T Consensus 88 ~ii~~~~~~~~-~~~~~iiDLavPrnvd~ 115 (134)
T pfam01488 88 PIITKEMVEEA-LKGLLFVDIAVPRDIEP 115 (134)
T ss_pred CEECHHHHHHC-CCCEEEEEECCCCCCCH
T ss_conf 36489999744-39859998347888665
No 116
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=96.29 E-value=0.019 Score=34.11 Aligned_cols=68 Identities=31% Similarity=0.471 Sum_probs=41.2
Q ss_pred EEEEEECCCCHHHHHHHHHHHHCCCCEEEEEEEECCC--CCCEEEE------CCCCEEEEEECCHHHHCCCCEEEECCC
Q ss_conf 1799981667789999999974499807899997476--5875600------278158998779436318847860687
Q gi|254780307|r 3 FKVAVVGATGNVGREMLNIICERGFPISEVVALASER--SAGTKVP------FGKETIDVQDVKSYDFSDTDICLMSAG 73 (335)
Q Consensus 3 ~kvaIiGatG~vG~el~~lL~~~~~p~~~l~~~~s~~--~~G~~i~------~~~~~~~~~~~~~~~~~~~Divf~a~p 73 (335)
|||+|+|| |.||+-+--.|..++ -..||.++.-.+ ..|+... +.. ...+..-+..+++++|+|+.+.+
T Consensus 1 mKI~IIGa-G~VG~~~A~~l~~~~-l~~el~L~Di~~~~a~g~a~DL~~a~~~~~-~~~i~~~~~~~l~daDvVVitaG 76 (308)
T cd05292 1 MKVAIVGA-GFVGSTTAYALLLRG-LASEIVLVDINKAKAEGEAMDLAHGTPFVK-PVRIYAGDYADCKGADVVVITAG 76 (308)
T ss_pred CEEEEECC-CHHHHHHHHHHHHCC-CCCEEEEEECCCCCCHHHHHHHHHHCCCCC-CCEEEECCHHHHCCCCEEEECCC
T ss_conf 97999994-888999999998679-988799991889845125687662410368-81684099999779999998999
No 117
>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=96.28 E-value=0.021 Score=33.90 Aligned_cols=72 Identities=17% Similarity=0.277 Sum_probs=43.1
Q ss_pred CEEEEEECCCCHHHHHHHHHHHHCC----CCEEEEEEEECCCCC----CEEEECCC------CEEEEEECCHHHHCCCCE
Q ss_conf 6179998166778999999997449----980789999747658----75600278------158998779436318847
Q gi|254780307|r 2 TFKVAVVGATGNVGREMLNIICERG----FPISEVVALASERSA----GTKVPFGK------ETIDVQDVKSYDFSDTDI 67 (335)
Q Consensus 2 ~~kvaIiGatG~vG~el~~lL~~~~----~p~~~l~~~~s~~~~----G~~i~~~~------~~~~~~~~~~~~~~~~Di 67 (335)
.|||+|+||+|-+|.-|+-+|...+ ...++|+++..+... |......+ .+....+=..+.|+++|+
T Consensus 2 p~kV~VtGAaG~Ig~~l~~~la~g~~~g~~~~i~L~L~Di~~~~~~l~Gv~mel~d~a~p~l~~i~~~~~~~~a~~~aDv 81 (325)
T cd01336 2 PIRVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPPALKALEGVVMELQDCAFPLLKSVVATTDPEEAFKDVDV 81 (325)
T ss_pred CEEEEEECCCHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCCCCEEEEEHHHCCCCCCCCEEECCCHHHHHCCCCE
T ss_conf 81999988871889999999975885689970599996677867765526745743786455873522887898368878
Q ss_pred EEECCC
Q ss_conf 860687
Q gi|254780307|r 68 CLMSAG 73 (335)
Q Consensus 68 vf~a~p 73 (335)
|++..+
T Consensus 82 vii~ag 87 (325)
T cd01336 82 AILVGA 87 (325)
T ss_pred EEEECC
T ss_conf 999488
No 118
>COG3804 Uncharacterized conserved protein related to dihydrodipicolinate reductase [Function unknown]
Probab=96.22 E-value=0.022 Score=33.68 Aligned_cols=103 Identities=21% Similarity=0.283 Sum_probs=62.3
Q ss_pred CCEEEEEECCCCHHHHHHHHHHHHCCCCEEEEEEE--ECCCCCCEEEEC--CCCEEEEEECCHHH----HCCCCEEEECC
Q ss_conf 96179998166778999999997449980789999--747658756002--78158998779436----31884786068
Q gi|254780307|r 1 MTFKVAVVGATGNVGREMLNIICERGFPISEVVAL--ASERSAGTKVPF--GKETIDVQDVKSYD----FSDTDICLMSA 72 (335)
Q Consensus 1 M~~kvaIiGatG~vG~el~~lL~~~~~p~~~l~~~--~s~~~~G~~i~~--~~~~~~~~~~~~~~----~~~~Divf~a~ 72 (335)
|+|++-+.| +|++|.+.+|.|..| |.++++.. .|....||.+.. +..++-+..-++++ +..-++++-.+
T Consensus 1 m~~~vvqyG-tG~vGv~air~l~ak--pe~elvgawv~s~ak~Gkdlgelagl~dlgV~a~~~~~avlAtl~~~~~y~~~ 77 (350)
T COG3804 1 MSLRVVQYG-TGSVGVAAIRGLLAK--PELELVGAWVHSAAKSGKDLGELAGLPDLGVIATNSIDAVLATLADAVIYAPL 77 (350)
T ss_pred CCCEEEEEC-CCHHHHHHHHHHHCC--CCCCEEEEEECCCCCCCCCHHHHCCCCCCEEEEECCCCCCEECCCCCEEEECC
T ss_conf 973058962-555779999999708--89716899951740013017876488885168652322200026663156102
Q ss_pred CHHHHHHHHHHHCCCCEEEEECCCCHHCCCCCCCCCCCH
Q ss_conf 758999999750456517996145100112111236410
Q gi|254780307|r 73 GHAVSSQMSPKIAANGCIVIDNSSAWRYDSDVPLIVPEV 111 (335)
Q Consensus 73 p~~~s~~~~~~~~~~g~~VIDlS~~~R~~~d~p~~lPei 111 (335)
-. +-+-..+++.+|+-||.-.+-.-+ | .+..||.
T Consensus 78 ~~--~~~~y~rlL~aGiNVv~~g~~l~y-P--w~~~Pel 111 (350)
T COG3804 78 LP--SVDEYARLLRAGINVVTPGPVLQY-P--WFYPPEL 111 (350)
T ss_pred CC--HHHHHHHHHHCCCCEECCCCCCCC-C--CCCCHHH
T ss_conf 61--299999999758706615853347-7--8679678
No 119
>TIGR00036 dapB dihydrodipicolinate reductase; InterPro: IPR011770 Dihydrodipicolinate reductase is an enzyme found in bacteria and higher plants which is involved in the biosynthesis of diaminopimelic acid, a component of bacterial cell walls, and the essential amino acid L-lysine. It catalyses the the reduced pyridine nucleotide-dependent reduction of the alpha,beta-unsaturated cyclic imine, dihydrodipicolinate, to generate tetrahydrodipicolinate as shown below : 2,3-dihydrodipicolinate + NAD(P)H = 2,3,4,5-tetrahydrodipicolinate + NAD(P)(+) As this enzyme is not found in mammals it is a potential target for the development of novel antibacterial and herbicidal compounds. The structures of the Escherichia coli (P04036 from SWISSPROT) and Mycobacterium tuberculosis (P72024 from SWISSPROT) enzymes have been determined , . The enzyme is a homotetramer where each monomer is composed of two domains, an N-terminal NAD(P)H-binding domain which forms a Rossman fold, and a C-terminal substrate-binding domain that forms an open, mixed alpha-beta sandwich.Tetramerisation occurs exclusively through interactions between C-terminal domain residues. Both enzymes show relatively little preference for either NADH or NADPH as cofactor. Conformational changes upon substrate binding bring the cofactor and substrate into close proximity and allow catalysis to occur. ; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0005737 cytoplasm.
Probab=96.20 E-value=0.031 Score=32.79 Aligned_cols=91 Identities=22% Similarity=0.242 Sum_probs=58.9
Q ss_pred CEEEEEECCCCHHHHHHHHHHHHCCCCEEEEEEEEC---CCCCC----EEEECCCCEEEEEECCHHH------HCCCCEE
Q ss_conf 617999816677899999999744998078999974---76587----5600278158998779436------3188478
Q gi|254780307|r 2 TFKVAVVGATGNVGREMLNIICERGFPISEVVALAS---ERSAG----TKVPFGKETIDVQDVKSYD------FSDTDIC 68 (335)
Q Consensus 2 ~~kvaIiGatG~vG~el~~lL~~~~~p~~~l~~~~s---~~~~G----~~i~~~~~~~~~~~~~~~~------~~~~Div 68 (335)
.|||||-||.|.-|+++++.+.. .+|.++|+..-. .+..| +...++.-...+++-.+.+ -.+.|++
T Consensus 1 ~ikvav~GA~GRMG~~~ik~~~~-~ye~l~Lv~A~~~~~~~~~G~D~GEl~g~g~~gv~v~~~~~~~~~l~~~~~~~DVl 79 (281)
T TIGR00036 1 LIKVAVAGAAGRMGRELIKAVLQ-AYEGLKLVAAFERHGSSLQGTDIGELAGIGKVGVPVTDDLEAVLVLAFTETKPDVL 79 (281)
T ss_pred CCCEEEECCCCHHHHHHHHHHHH-HCCCEEEEEEEEECCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCEE
T ss_conf 98358847887346999999997-48981678888616888566542024225547841000578899987402368647
Q ss_pred EECCCHHHHHHHHHHHCCCCEEEEE
Q ss_conf 6068758999999750456517996
Q gi|254780307|r 69 LMSAGHAVSSQMSPKIAANGCIVID 93 (335)
Q Consensus 69 f~a~p~~~s~~~~~~~~~~g~~VID 93 (335)
+=.+-.+.+.+.++.+.+.|+..|-
T Consensus 80 iDFT~p~g~~~~~~~a~~~Gv~~V~ 104 (281)
T TIGR00036 80 IDFTTPEGVVENVKIALENGVRLVV 104 (281)
T ss_pred EECCCCHHHHHHHHHHHHCCCEEEE
T ss_conf 8738605678999999966885577
No 120
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=96.19 E-value=0.026 Score=33.33 Aligned_cols=90 Identities=18% Similarity=0.350 Sum_probs=50.9
Q ss_pred EEEEEECCCCHHHHHHHHHHHHCCCCEEEEEEEECCC------CCCEEEECCC-------------CEEEEEECCHHHHC
Q ss_conf 1799981667789999999974499807899997476------5875600278-------------15899877943631
Q gi|254780307|r 3 FKVAVVGATGNVGREMLNIICERGFPISEVVALASER------SAGTKVPFGK-------------ETIDVQDVKSYDFS 63 (335)
Q Consensus 3 ~kvaIiGatG~vG~el~~lL~~~~~p~~~l~~~~s~~------~~G~~i~~~~-------------~~~~~~~~~~~~~~ 63 (335)
|||+|+|. ||||.-+--.|++++|.+ ..+..+. ..|+. ++.+ ..+.+..-......
T Consensus 1 MkI~ViGl-GyVGl~~a~~lA~~G~~V---~g~D~d~~~i~~l~~g~~-p~~E~gl~~ll~~~~~~~~l~~ttd~~~~i~ 75 (411)
T TIGR03026 1 MKIAVIGL-GYVGLPLAALLADLGHEV---TGVDIDQEKVDKLNKGKS-PIYEPGLDELLAKALAAGRLRATTDYEDAIR 75 (411)
T ss_pred CEEEEECC-CHHHHHHHHHHHHCCCCE---EEEECCHHHHHHHHCCCC-CCCCCCHHHHHHHHHHCCCEEEECCHHHHHH
T ss_conf 97999897-877999999999489948---999899999999977989-9789898999999986399799878899872
Q ss_pred CCCEEEECCCHHHH--------------HHHHHHHCCCCEEEEECCCCH
Q ss_conf 88478606875899--------------999975045651799614510
Q gi|254780307|r 64 DTDICLMSAGHAVS--------------SQMSPKIAANGCIVIDNSSAW 98 (335)
Q Consensus 64 ~~Divf~a~p~~~s--------------~~~~~~~~~~g~~VIDlS~~~ 98 (335)
++|++|.|.|.-.. .++. +....+..||--|.-.
T Consensus 76 ~~dii~I~V~TP~~~~g~~d~s~l~~a~~~i~-~~l~~~~lvii~STV~ 123 (411)
T TIGR03026 76 DADVIIICVPTPLKEDGSPDLSYVESAAETIA-KHLRKGATVVLESTVP 123 (411)
T ss_pred HCCEEEEECCCCCCCCCCCHHHHHHHHHHHHH-HHCCCCCEEEEECCCC
T ss_conf 09999997689866688721389999999999-7668999899957868
No 121
>TIGR01777 yfcH conserved hypothetical protein TIGR01777; InterPro: IPR010099 This entry represents proteins of unknown function including the Escherichia coli YfcH protein..
Probab=96.13 E-value=0.0045 Score=37.87 Aligned_cols=70 Identities=21% Similarity=0.320 Sum_probs=41.4
Q ss_pred EEEECC-CCHHHHHHHHHHHHCCCCEEEEEEEECCCCCCE-EEECCCCEEEE------EECCHH--HHCCCCEEEECCCH
Q ss_conf 999816-677899999999744998078999974765875-60027815899------877943--63188478606875
Q gi|254780307|r 5 VAVVGA-TGNVGREMLNIICERGFPISEVVALASERSAGT-KVPFGKETIDV------QDVKSY--DFSDTDICLMSAGH 74 (335)
Q Consensus 5 vaIiGa-tG~vG~el~~lL~~~~~p~~~l~~~~s~~~~G~-~i~~~~~~~~~------~~~~~~--~~~~~Divf~a~p~ 74 (335)
|.|-|+ ||++|+.|.+.|.+.+| +++.++-+....+ ...+..+...- .-.+.. .+.++|.|+--+|.
T Consensus 1 ~litGgnTGfiG~~L~~~L~~~g~---~V~~l~R~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~W~~l~~~DaviNLAG~ 77 (307)
T TIGR01777 1 ILITGGNTGFIGRALTQRLTKSGH---EVTILTRSPQAESNTKKVGYKNWLAEGKLGIVIAESGWSALEGADAVINLAGE 77 (307)
T ss_pred CEECCCCCCHHHHHHHHHHHHCCC---EEEEEEECCCCCCCHHCCCCCCCCCCCCCCCCCCHHCCCCCCCCCEEEECCCC
T ss_conf 964153302378999999984799---89999616864320002554455552212452072205667886279855688
Q ss_pred HHH
Q ss_conf 899
Q gi|254780307|r 75 AVS 77 (335)
Q Consensus 75 ~~s 77 (335)
...
T Consensus 78 ~i~ 80 (307)
T TIGR01777 78 PIA 80 (307)
T ss_pred CCC
T ss_conf 857
No 122
>pfam03721 UDPG_MGDP_dh_N UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain. The UDP-glucose/GDP-mannose dehydrogenaseses are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate.
Probab=96.12 E-value=0.01 Score=35.67 Aligned_cols=68 Identities=19% Similarity=0.362 Sum_probs=40.9
Q ss_pred EEEEEECCCCHHHHHHHHHHHHCCCCEEEEEEEECCC------CCCEEEECCC------------CEEEEEECCHHHHCC
Q ss_conf 1799981667789999999974499807899997476------5875600278------------158998779436318
Q gi|254780307|r 3 FKVAVVGATGNVGREMLNIICERGFPISEVVALASER------SAGTKVPFGK------------ETIDVQDVKSYDFSD 64 (335)
Q Consensus 3 ~kvaIiGatG~vG~el~~lL~~~~~p~~~l~~~~s~~------~~G~~i~~~~------------~~~~~~~~~~~~~~~ 64 (335)
|||+|+|. ||||.-+.-.|++++| ++..+.-+. ..|+. ++.+ ..+....-......+
T Consensus 1 MkI~ViGl-GyVGl~~a~~la~~G~---~V~g~D~d~~~v~~ln~g~~-p~~E~~l~~~l~~~~~~~~~~~~~~~~~i~~ 75 (185)
T pfam03721 1 MRIAVIGL-GYVGLPTAVCLAEIGH---DVVGVDINQSKIDKLNNGKI-PIYEPGLEELLKANVSGRLRFTTDVAEAIKE 75 (185)
T ss_pred CEEEEECC-CHHHHHHHHHHHHCCC---EEEEEECCHHHHHHHHCCCC-CCCCCCHHHHHHHHHCCCEEEECCHHHHHHH
T ss_conf 97999897-8748999999994899---39999799899999862689-7467588999987340896998787998844
Q ss_pred CCEEEECCCHH
Q ss_conf 84786068758
Q gi|254780307|r 65 TDICLMSAGHA 75 (335)
Q Consensus 65 ~Divf~a~p~~ 75 (335)
+|++|.|.|.-
T Consensus 76 ~d~i~I~VpTP 86 (185)
T pfam03721 76 ADVIFIAVPTP 86 (185)
T ss_pred CCEEEEECCCC
T ss_conf 98999973687
No 123
>PRK06392 homoserine dehydrogenase; Provisional
Probab=96.09 E-value=0.016 Score=34.51 Aligned_cols=94 Identities=18% Similarity=0.299 Sum_probs=54.8
Q ss_pred EEEEEECCCCHHHHHHHHHHHHCCC-----CEEEEEEEECCCC-----CCEEE----ECCCC----EEEEEEC--CHHHH
Q ss_conf 1799981667789999999974499-----8078999974765-----87560----02781----5899877--94363
Q gi|254780307|r 3 FKVAVVGATGNVGREMLNIICERGF-----PISEVVALASERS-----AGTKV----PFGKE----TIDVQDV--KSYDF 62 (335)
Q Consensus 3 ~kvaIiGatG~vG~el~~lL~~~~~-----p~~~l~~~~s~~~-----~G~~i----~~~~~----~~~~~~~--~~~~~ 62 (335)
|||+|+|. |.||+.++++|.++.. -.+++..++.++. .|-.+ ....+ +...+.+ ++..-
T Consensus 1 i~I~l~G~-G~VG~~v~~~l~~~~~~~~~~~~i~vv~v~~s~~~~~~~~gid~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (326)
T PRK06392 1 IRISIIGL-GNVGLNVLRIIKSRNDDRRNNNGISVVSVSDSKLSYYNERGLDIGKIISYKEKGRLEEIDYEKIKFDEIFE 79 (326)
T ss_pred CEEEEECC-CHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCHHCCCCCCCCHHHHHCCCCCCCCCCCCHHCCCHHHHHC
T ss_conf 97999957-88999999999974999984899379999961010146568898885212232344444200044456645
Q ss_pred CCCCEEEECCCHH----HHHHHHHHHCCCCEEEEECCCC
Q ss_conf 1884786068758----9999997504565179961451
Q gi|254780307|r 63 SDTDICLMSAGHA----VSSQMSPKIAANGCIVIDNSSA 97 (335)
Q Consensus 63 ~~~Divf~a~p~~----~s~~~~~~~~~~g~~VIDlS~~ 97 (335)
...|+++-|.|.. .+..+...+.++|+.||...-+
T Consensus 80 ~~~dvive~~~~~~~g~~~~~~~~~aL~~GkhVVTANK~ 118 (326)
T PRK06392 80 IKPDVIVDVTPASKDGIREKNLYINAFEHGIDVVTANKS 118 (326)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHCCCEEECCCCC
T ss_conf 689879993027754422699999999879969977960
No 124
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=96.09 E-value=0.11 Score=29.58 Aligned_cols=90 Identities=18% Similarity=0.302 Sum_probs=54.1
Q ss_pred EEEEEECCCCHHHHHHHHHHHHCCCCEEEEEEEECCC-------CCCEEEECCCCEEEEE--EC-CHHHHCCCCEEEECC
Q ss_conf 1799981667789999999974499807899997476-------5875600278158998--77-943631884786068
Q gi|254780307|r 3 FKVAVVGATGNVGREMLNIICERGFPISEVVALASER-------SAGTKVPFGKETIDVQ--DV-KSYDFSDTDICLMSA 72 (335)
Q Consensus 3 ~kvaIiGatG~vG~el~~lL~~~~~p~~~l~~~~s~~-------~~G~~i~~~~~~~~~~--~~-~~~~~~~~Divf~a~ 72 (335)
|||+|+|+ |-+|.-+--.|.+.++ ++.+++... ..|-.+.-.+...... .. +..+....|++|.|+
T Consensus 1 MkI~IiGa-GaiG~~~a~~L~~ag~---~V~li~r~~~~~~~i~~~Gl~i~~~~~~~~~~~~~~~~~~~~~~~D~iiv~v 76 (307)
T PRK06522 1 MKIAILGA-GAIGGLFGARLAQAGH---DVTLVARGATLAEALNENGLRLLEGGEVFVVPVPAADDPAELGPQDLVILAV 76 (307)
T ss_pred CEEEEECC-CHHHHHHHHHHHHCCC---CEEEEECCHHHHHHHHHCCEEEECCCCEEECCCCCCCCHHHCCCCCEEEEEC
T ss_conf 98999991-4999999999984899---8899978888999999689399528976980550348866748988899980
Q ss_pred CHHHHHHHHHHH---CCCCEEEEECCC
Q ss_conf 758999999750---456517996145
Q gi|254780307|r 73 GHAVSSQMSPKI---AANGCIVIDNSS 96 (335)
Q Consensus 73 p~~~s~~~~~~~---~~~g~~VIDlS~ 96 (335)
.+....+..+.+ ...++.||-+-.
T Consensus 77 Ks~~~~~a~~~l~~~l~~~t~iv~lqN 103 (307)
T PRK06522 77 KAYQLPAALPDLAPLLGPETVVLFLQN 103 (307)
T ss_pred CCCCHHHHHHHHHHHCCCCCEEEEEEC
T ss_conf 666899999999864599948999616
No 125
>PRK06223 malate dehydrogenase; Reviewed
Probab=96.09 E-value=0.031 Score=32.78 Aligned_cols=69 Identities=20% Similarity=0.417 Sum_probs=40.7
Q ss_pred EEEEEECCCCHHHHHHHHHHHHCCCCEEEEEEEECCC--CCCEEEEC------CCCEEEEEE-CCHHHHCCCCEEEECCC
Q ss_conf 1799981667789999999974499807899997476--58756002------781589987-79436318847860687
Q gi|254780307|r 3 FKVAVVGATGNVGREMLNIICERGFPISEVVALASER--SAGTKVPF------GKETIDVQD-VKSYDFSDTDICLMSAG 73 (335)
Q Consensus 3 ~kvaIiGatG~vG~el~~lL~~~~~p~~~l~~~~s~~--~~G~~i~~------~~~~~~~~~-~~~~~~~~~Divf~a~p 73 (335)
|||+|+|| |.||..+.-.|..++ -..||.++.-.+ ..|..... ...+..+.- -+-.+++++|+|+.+.+
T Consensus 1 mKI~IiGa-G~VG~~~a~~l~~~~-l~~el~L~Di~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~d~~~~~daDiVVitag 78 (312)
T PRK06223 1 MKISIIGA-GNVGATLAHLLALKE-LGKDVVLFDIPEGIPQGKALDIAESSAVDGFDAKITGTNDYADIAGSDVVIITAG 78 (312)
T ss_pred CEEEEECC-CHHHHHHHHHHHHCC-CCCEEEEECCCCCHHHHHHHHHHCCCCCCCCCCEEEECCCHHHHCCCCEEEEECC
T ss_conf 97999996-989999999998579-9874899769997336798887651433688847983788899579999999067
No 126
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=96.09 E-value=0.0091 Score=36.04 Aligned_cols=89 Identities=13% Similarity=0.256 Sum_probs=51.0
Q ss_pred EEEEEECCCCHHHHHHHHHHHHCCCCEEEEEEEECCCCCCEEEECCCCEEEEEECCHHHH-CCCC---EEEECCCHHHHH
Q ss_conf 179998166778999999997449980789999747658756002781589987794363-1884---786068758999
Q gi|254780307|r 3 FKVAVVGATGNVGREMLNIICERGFPISEVVALASERSAGTKVPFGKETIDVQDVKSYDF-SDTD---ICLMSAGHAVSS 78 (335)
Q Consensus 3 ~kvaIiGatG~vG~el~~lL~~~~~p~~~l~~~~s~~~~G~~i~~~~~~~~~~~~~~~~~-~~~D---ivf~a~p~~~s~ 78 (335)
|||++||- |.-|..+.+-|.+++|+. ..+.-... +.-.+..+..... -+..++ ..+| ++|+|+|++...
T Consensus 1 MkIGfIGL-G~MG~~mA~nL~~~G~~V---~v~dr~~~--~~~~~~~~ga~~~-~s~~e~~~~~d~prvI~l~lp~~~~V 73 (301)
T PRK09599 1 MQLGMIGL-GRMGGNMARRLLRGGHEV---VGYDRNPE--AVEALAAEGATGA-ASLEELVAKLPAPRVVWLMVPAGEIT 73 (301)
T ss_pred CEEEEECH-HHHHHHHHHHHHHCCCEE---EEECCCHH--HHHHHHHCCCEEC-CCHHHHHHHCCCCCEEEEECCCCHHH
T ss_conf 97999834-587999999999689907---99769999--9999998599432-99999997078887799981797038
Q ss_pred -HHHHH---HCCCCEEEEECCCCH
Q ss_conf -99975---045651799614510
Q gi|254780307|r 79 -QMSPK---IAANGCIVIDNSSAW 98 (335)
Q Consensus 79 -~~~~~---~~~~g~~VIDlS~~~ 98 (335)
+++.. ..+.|..|||.|..+
T Consensus 74 d~Vi~~l~~~l~~g~iiID~sts~ 97 (301)
T PRK09599 74 DSTIDELAPLLEAGDIVIDGGNSY 97 (301)
T ss_pred HHHHHHHHHHCCCCCEEEECCCCC
T ss_conf 999999996278998887089998
No 127
>TIGR01915 npdG NADPH-dependent F420 reductase; InterPro: IPR010185 Members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase..
Probab=96.06 E-value=0.022 Score=33.66 Aligned_cols=98 Identities=18% Similarity=0.275 Sum_probs=65.7
Q ss_pred EEEEEECCCCHHHHHHHHHHHHCC-CCEE--EEEEEECCCC--CCE-------EEECCC--CEEEEEECCHHH-HCCCCE
Q ss_conf 179998166778999999997449-9807--8999974765--875-------600278--158998779436-318847
Q gi|254780307|r 3 FKVAVVGATGNVGREMLNIICERG-FPIS--EVVALASERS--AGT-------KVPFGK--ETIDVQDVKSYD-FSDTDI 67 (335)
Q Consensus 3 ~kvaIiGatG~vG~el~~lL~~~~-~p~~--~l~~~~s~~~--~G~-------~i~~~~--~~~~~~~~~~~~-~~~~Di 67 (335)
|||||+|+||=.|.-|.=+|...+ .|.. +=.-++|.+. |-+ .+...+ +++.++-+++.+ -+..|+
T Consensus 1 mkIAvLGGTGdqG~GLALRlA~~glmPeG~~~~iIIGSR~~EkA~EaA~ka~e~l~~~G~d~~i~~~G~~N~~AA~~aDV 80 (233)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRLAKAGLMPEGVDNEIIIGSRDKEKAEEAAAKALEELGDQGVDRDIKVEGAENEEAAKRADV 80 (233)
T ss_pred CEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCHHHHHHCCE
T ss_conf 96788448884025699999870778787775557704884569999999999997089513625754887788723897
Q ss_pred EEECCCHHHHHHHHHHHCC---CCEEEEECCCCHHC
Q ss_conf 8606875899999975045---65179961451001
Q gi|254780307|r 68 CLMSAGHAVSSQMSPKIAA---NGCIVIDNSSAWRY 100 (335)
Q Consensus 68 vf~a~p~~~s~~~~~~~~~---~g~~VIDlS~~~R~ 100 (335)
|+++.|-+...+....+.+ +++.|||..--.-.
T Consensus 81 Vil~vP~~~~~~~l~~~~~~L~~dK~Vis~~VPl~~ 116 (233)
T TIGR01915 81 VILAVPFDHVLKTLESIKDELEADKIVISPVVPLAS 116 (233)
T ss_pred EEEEECCHHHHHHHHHHHHHHCCCCEEEECCCCCCH
T ss_conf 899842222478999999985189289964787500
No 128
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=96.03 E-value=0.015 Score=34.67 Aligned_cols=90 Identities=19% Similarity=0.252 Sum_probs=55.8
Q ss_pred EEEEEECCCCHHHHHHHHHHHHCCCCEEEEEEEECCCCCCEEEECCCC-EEEEEECCHHHHCCCCEEEECCCHHHHHHHH
Q ss_conf 179998166778999999997449980789999747658756002781-5899877943631884786068758999999
Q gi|254780307|r 3 FKVAVVGATGNVGREMLNIICERGFPISEVVALASERSAGTKVPFGKE-TIDVQDVKSYDFSDTDICLMSAGHAVSSQMS 81 (335)
Q Consensus 3 ~kvaIiGatG~vG~el~~lL~~~~~p~~~l~~~~s~~~~G~~i~~~~~-~~~~~~~~~~~~~~~Divf~a~p~~~s~~~~ 81 (335)
+||++||- |.-|.-+-+.|.+.+|+ +..+ .++.-+..+.... -........+...++|+||+|+|++...+-+
T Consensus 1 ~kIafIGL-G~MG~pmA~~L~~aG~~---v~v~--~r~~~ka~~~~~~~Ga~~a~s~~eaa~~aDvVitmv~~~~~V~~V 74 (286)
T COG2084 1 MKIAFIGL-GIMGSPMAANLLKAGHE---VTVY--NRTPEKAAELLAAAGATVAASPAEAAAEADVVITMLPDDAAVRAV 74 (286)
T ss_pred CEEEEECC-CHHHHHHHHHHHHCCCE---EEEE--ECCHHHHHHHHHHCCCEECCCHHHHHHHCCEEEEECCCHHHHHHH
T ss_conf 90799857-35259999999977987---8998--088566568999729800388999996199899961798999999
Q ss_pred H----HHC---CCCEEEEECCCCH
Q ss_conf 7----504---5651799614510
Q gi|254780307|r 82 P----KIA---ANGCIVIDNSSAW 98 (335)
Q Consensus 82 ~----~~~---~~g~~VIDlS~~~ 98 (335)
- -+. +.|..|||+|+.-
T Consensus 75 ~~g~~g~~~~~~~G~i~IDmSTis 98 (286)
T COG2084 75 LFGENGLLEGLKPGAIVIDMSTIS 98 (286)
T ss_pred HHCCCCHHHCCCCCCEEEECCCCC
T ss_conf 818533533378997899878999
No 129
>pfam01370 Epimerase NAD dependent epimerase/dehydratase family. This family of proteins utilize NAD as a cofactor. The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions.
Probab=96.02 E-value=0.11 Score=29.38 Aligned_cols=25 Identities=24% Similarity=0.642 Sum_probs=21.3
Q ss_pred EEEECCCCHHHHHHHHHHHHCCCCE
Q ss_conf 9998166778999999997449980
Q gi|254780307|r 5 VAVVGATGNVGREMLNIICERGFPI 29 (335)
Q Consensus 5 vaIiGatG~vG~el~~lL~~~~~p~ 29 (335)
|-|.||||++|+.|++.|.+++|..
T Consensus 1 ILItGasGfiG~~l~~~L~~~g~~v 25 (235)
T pfam01370 1 ILVTGGTGFIGSALVRRLLQEGYEV 25 (235)
T ss_pred EEEECCCCHHHHHHHHHHHHCCCEE
T ss_conf 7997289799999999999787989
No 130
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=95.99 E-value=0.045 Score=31.85 Aligned_cols=96 Identities=15% Similarity=0.205 Sum_probs=60.2
Q ss_pred CCEEEEEECCCCHHHHHHHHHHHHCCCCEEEEEEEECCCCCCEEE-----------E------C-CCCEEEEEECCHHHH
Q ss_conf 961799981667789999999974499807899997476587560-----------0------2-781589987794363
Q gi|254780307|r 1 MTFKVAVVGATGNVGREMLNIICERGFPISEVVALASERSAGTKV-----------P------F-GKETIDVQDVKSYDF 62 (335)
Q Consensus 1 M~~kvaIiGatG~vG~el~~lL~~~~~p~~~l~~~~s~~~~G~~i-----------~------~-~~~~~~~~~~~~~~~ 62 (335)
|-.||||||+ |..|.-...++..++|+ +..+..+..+-+.+ . . ....+.+.+--.+..
T Consensus 1 MIkkVAVIGA-GvMGsGwAa~FA~aG~~---V~L~Dp~peA~~ki~~~l~~a~~al~~L~~~~l~~~grL~~~~sL~eAV 76 (489)
T PRK07531 1 MIMKAACIGG-GVIGGGWAARFLLNGWD---VAVFDPHPEAERIIGEVLANARRALPGLTDAPLPPEGRLSFCASLAEAV 76 (489)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCCCE---EEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCHHHHH
T ss_conf 9767999871-88689999999957996---9999488789999999999999987753203556467768638899997
Q ss_pred CCCCEEEECCCHHHHHH--HH---HHHCCCCEEEEECCCCHHC
Q ss_conf 18847860687589999--99---7504565179961451001
Q gi|254780307|r 63 SDTDICLMSAGHAVSSQ--MS---PKIAANGCIVIDNSSAWRY 100 (335)
Q Consensus 63 ~~~Divf~a~p~~~s~~--~~---~~~~~~g~~VIDlS~~~R~ 100 (335)
+++|+|.-|.|-....+ +. ..+...++++-+++|.+..
T Consensus 77 ~dADlVqEaVPE~LdIKq~vf~eLd~~~~~~aIiASsTSgl~~ 119 (489)
T PRK07531 77 AGADWIQESVPERLDLKHKVLAEIEAAARPDALIGSSTSGFKP 119 (489)
T ss_pred CCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCCH
T ss_conf 4799999878566999999999999767998389853665889
No 131
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=95.97 E-value=0.11 Score=29.38 Aligned_cols=90 Identities=20% Similarity=0.312 Sum_probs=54.3
Q ss_pred EEEEEECCCCHHHHHHHHHHHHCCCCEEEEEEEECCC------CCCEEEECCCCEEEEEE---CCHHHH-CCCCEEEECC
Q ss_conf 1799981667789999999974499807899997476------58756002781589987---794363-1884786068
Q gi|254780307|r 3 FKVAVVGATGNVGREMLNIICERGFPISEVVALASER------SAGTKVPFGKETIDVQD---VKSYDF-SDTDICLMSA 72 (335)
Q Consensus 3 ~kvaIiGatG~vG~el~~lL~~~~~p~~~l~~~~s~~------~~G~~i~~~~~~~~~~~---~~~~~~-~~~Divf~a~ 72 (335)
|||+|+|+ |-+|.-+--.|.+.+| ++.+++.++ +.|-.+.....+..+.. .++.+. ..+|++|+|+
T Consensus 1 MkI~I~Ga-GAiG~~~a~~L~~~g~---~V~lv~r~~~~~~i~~~Gl~i~~~~~~~~~~~~~~~~~~~~~~~~D~viva~ 76 (306)
T PRK12921 1 MKIAVVGA-GAVGGTFGARLLEAGR---DVTFLGRSARAEALREKGLVIRSDHGDVTVPGPVITDPEEITGPFDLVILAV 76 (306)
T ss_pred CEEEEECC-CHHHHHHHHHHHHCCC---CEEEEEECCHHHHHHHCCEEEEECCCEEEEECCCCCCCHHHCCCCCEEEEEE
T ss_conf 98999992-4999999999983699---8899970009999997896999779769980610508056568976899970
Q ss_pred CHHHHHHHHHHH---CCCCEEEEECCC
Q ss_conf 758999999750---456517996145
Q gi|254780307|r 73 GHAVSSQMSPKI---AANGCIVIDNSS 96 (335)
Q Consensus 73 p~~~s~~~~~~~---~~~g~~VIDlS~ 96 (335)
-.....+..+.+ ...+..|+.+-.
T Consensus 77 Ks~~~~~a~~~l~~~~~~~t~il~lQN 103 (306)
T PRK12921 77 KAYQLDAAIPDLKPLVGEDTVIIPLQN 103 (306)
T ss_pred CCCCHHHHHHHHHHHCCCCCEEEEECC
T ss_conf 456779999999863399948999348
No 132
>COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=95.86 E-value=0.038 Score=32.28 Aligned_cols=33 Identities=21% Similarity=0.469 Sum_probs=25.4
Q ss_pred EEEEEECCCCHHHHHHHHHHHHCCCCEEEEEEEECC
Q ss_conf 179998166778999999997449980789999747
Q gi|254780307|r 3 FKVAVVGATGNVGREMLNIICERGFPISEVVALASE 38 (335)
Q Consensus 3 ~kvaIiGatG~vG~el~~lL~~~~~p~~~l~~~~s~ 38 (335)
|+|.|.|+||++|+.|.+.|.+++| ++..+...
T Consensus 1 ~~iLVtG~tGfiG~~l~~~L~~~g~---~V~~~~r~ 33 (314)
T COG0451 1 MRILVTGGAGFIGSHLVERLLAAGH---DVRGLDRL 33 (314)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCC---EEEEEECC
T ss_conf 9699992887779999999985899---79999178
No 133
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.82 E-value=0.048 Score=31.68 Aligned_cols=97 Identities=21% Similarity=0.374 Sum_probs=59.6
Q ss_pred CCE-EEEEECCCCHHHHHHHHHHHHCCCCEEEEEEEECCCCC-CEE---E--------ECC---CC--E---EEEEEC-C
Q ss_conf 961-79998166778999999997449980789999747658-756---0--------027---81--5---899877-9
Q gi|254780307|r 1 MTF-KVAVVGATGNVGREMLNIICERGFPISEVVALASERSA-GTK---V--------PFG---KE--T---IDVQDV-K 58 (335)
Q Consensus 1 M~~-kvaIiGatG~vG~el~~lL~~~~~p~~~l~~~~s~~~~-G~~---i--------~~~---~~--~---~~~~~~-~ 58 (335)
|++ ||+|+|| |..|..+..++..+++++ ..+..+..+ .+. + ..+ .. + -.+... +
T Consensus 1 m~i~~VaViGa-G~mG~~IA~~~a~~G~~V---~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~d 76 (282)
T PRK05808 1 MSIQKIGVIGA-GTMGNGIAQVCAVAGYDV---VMVDISDEAVDRGLATITKSLDRLVKKGKMTEADKEAALARITGTTD 76 (282)
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHHCCCCE---EEEECCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCC
T ss_conf 97268999897-889999999999579938---99979989999999999999999997088642669999952636688
Q ss_pred HHHHCCCCEEEECCCHHHHHH--H---HHHHCCCCEEEEECCCCHHCC
Q ss_conf 436318847860687589999--9---975045651799614510011
Q gi|254780307|r 59 SYDFSDTDICLMSAGHAVSSQ--M---SPKIAANGCIVIDNSSAWRYD 101 (335)
Q Consensus 59 ~~~~~~~Divf~a~p~~~s~~--~---~~~~~~~g~~VIDlS~~~R~~ 101 (335)
-.+++++|+|+-|.|-+...+ + ..++...++++-+++|.+...
T Consensus 77 l~~~~~aDlViEav~E~l~iK~~vf~~le~~~~~~~IlaSnTSsl~is 124 (282)
T PRK05808 77 LDDLKDADLVIEAAVENMDIKKKIFAQLDEIAKPEAILATNTSSLSIT 124 (282)
T ss_pred HHHHCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCCHH
T ss_conf 889675999998775634556999999995579984899758877669
No 134
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=95.74 E-value=0.038 Score=32.27 Aligned_cols=68 Identities=26% Similarity=0.503 Sum_probs=44.6
Q ss_pred EEEEECCCCHHHHHHHHHHHHCCCCEEEEEEEECC--CCCCEEEE------CCCCEEEEEECCHHHHCCCCEEEECCC
Q ss_conf 79998166778999999997449980789999747--65875600------278158998779436318847860687
Q gi|254780307|r 4 KVAVVGATGNVGREMLNIICERGFPISEVVALASE--RSAGTKVP------FGKETIDVQDVKSYDFSDTDICLMSAG 73 (335)
Q Consensus 4 kvaIiGatG~vG~el~~lL~~~~~p~~~l~~~~s~--~~~G~~i~------~~~~~~~~~~~~~~~~~~~Divf~a~p 73 (335)
||+|+|+ |.||.-+.-+|..++ -..||.++.-. ...|+... +......+..-+.++++++|+++.+.+
T Consensus 2 KI~IIGa-G~VG~~~a~~l~~~~-l~~el~L~Di~~~~a~G~a~DL~~~~~~~~~~~~i~~~~~~~~~~aDvvVitAG 77 (306)
T cd05291 2 KVVIIGA-GHVGSSFAYSLVNQG-IADELVLIDINEEKAEGEALDLEDALAFLPSPVKIKAGDYSDCKDADIVVITAG 77 (306)
T ss_pred EEEEECC-CHHHHHHHHHHHHCC-CCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEECCHHHHCCCCEEEECCC
T ss_conf 5999996-988999999998579-987799981898701769998870133059973996088788478999999067
No 135
>PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional
Probab=95.65 E-value=0.1 Score=29.70 Aligned_cols=86 Identities=20% Similarity=0.349 Sum_probs=48.3
Q ss_pred EEEEEECCCCHHHHHHHHHHHHCCCCEEEEEEEE--CCCCCCEEEECCCCEEEEEECCHH----HHCCCCEEEECCC---
Q ss_conf 1799981667789999999974499807899997--476587560027815899877943----6318847860687---
Q gi|254780307|r 3 FKVAVVGATGNVGREMLNIICERGFPISEVVALA--SERSAGTKVPFGKETIDVQDVKSY----DFSDTDICLMSAG--- 73 (335)
Q Consensus 3 ~kvaIiGatG~vG~el~~lL~~~~~p~~~l~~~~--s~~~~G~~i~~~~~~~~~~~~~~~----~~~~~Divf~a~p--- 73 (335)
|||.|.|++|.+|++|.+.|...+ ++..+. +.+..+ .+.+.+.. .--.-|+|+-|..
T Consensus 1 MkILvtGa~GqLG~~l~~~l~~~~----~~~~~~~~~~~~~~----------Dit~~~~v~~~~~~~~Pd~IIN~aA~T~ 66 (299)
T PRK09987 1 MNILLFGKTGQVGWELQRALAPLG----NLIALDVHSTDYCG----------DFSNPEGVAETVRKIRPDVIVNAAAHTA 66 (299)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCC----CEEEEECCCCCCCC----------CCCCHHHHHHHHHHCCCCEEEECHHHCC
T ss_conf 979998999978999999866509----88998526300136----------7899999999999659999998831016
Q ss_pred ---------------HHHHHHHHHHHCCCCEEEEECCCCHHCCC
Q ss_conf ---------------58999999750456517996145100112
Q gi|254780307|r 74 ---------------HAVSSQMSPKIAANGCIVIDNSSAWRYDS 102 (335)
Q Consensus 74 ---------------~~~s~~~~~~~~~~g~~VIDlS~~~R~~~ 102 (335)
......++....+.|+..|-.|+||=++-
T Consensus 67 VD~~E~~~~~a~~vN~~~~~~La~~~~~~~~~lIhiSTD~VFdG 110 (299)
T PRK09987 67 VDKAESEPEFAQLLNATSVEAIAKAANEVGAWVVHYSTDYVFPG 110 (299)
T ss_pred HHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCEEECC
T ss_conf 36652489999998889999999999973985999632116068
No 136
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=95.62 E-value=0.024 Score=33.46 Aligned_cols=78 Identities=14% Similarity=0.249 Sum_probs=47.3
Q ss_pred EEEEEECCCCHHHHHHHHHHHHCCCCEEEEEEEECCCCCCEEEECCCC-EEEEEEC------CHHHHCCCCEEEECCCHH
Q ss_conf 179998166778999999997449980789999747658756002781-5899877------943631884786068758
Q gi|254780307|r 3 FKVAVVGATGNVGREMLNIICERGFPISEVVALASERSAGTKVPFGKE-TIDVQDV------KSYDFSDTDICLMSAGHA 75 (335)
Q Consensus 3 ~kvaIiGatG~vG~el~~lL~~~~~p~~~l~~~~s~~~~G~~i~~~~~-~~~~~~~------~~~~~~~~Divf~a~p~~ 75 (335)
|||-|+|| |-||..|.+.|..++| ++..+..+...-+.+..... ....-+. .+....++|+++.+++++
T Consensus 1 M~IiI~Ga-G~vG~~La~~Ls~e~~---dV~vID~d~~~~~~~~~~lDv~~i~Gd~~~~~~L~~Agi~~ad~~IAvT~~D 76 (455)
T PRK09496 1 MKIIILGA-GQVGGTLAERLVGENN---DVTVIDTDEERLRRLQDRLDVRTVVGNGSHPDVLREAGAEDADMLIAVTDSD 76 (455)
T ss_pred CEEEEECC-CHHHHHHHHHHHHCCC---CEEEEECCHHHHHHHHHHCCEEEEEECCCCHHHHHHCCCCCCCEEEEECCCH
T ss_conf 97999998-8899999999986899---7999989999999988625868999668999999965998699999957971
Q ss_pred HHHHHHHHH
Q ss_conf 999999750
Q gi|254780307|r 76 VSSQMSPKI 84 (335)
Q Consensus 76 ~s~~~~~~~ 84 (335)
..--+...+
T Consensus 77 e~Nli~~~l 85 (455)
T PRK09496 77 ETNMVACQI 85 (455)
T ss_pred HHHHHHHHH
T ss_conf 899999999
No 137
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=95.59 E-value=0.023 Score=33.66 Aligned_cols=92 Identities=17% Similarity=0.212 Sum_probs=54.2
Q ss_pred EEEEEECCCCHHHHHHHHHHHHCCCCEEEEEEEECCCCCCEEEECCCCEEEEEECCHH--HHCCCCEEEECCCHHHH-HH
Q ss_conf 1799981667789999999974499807899997476587560027815899877943--63188478606875899-99
Q gi|254780307|r 3 FKVAVVGATGNVGREMLNIICERGFPISEVVALASERSAGTKVPFGKETIDVQDVKSY--DFSDTDICLMSAGHAVS-SQ 79 (335)
Q Consensus 3 ~kvaIiGatG~vG~el~~lL~~~~~p~~~l~~~~s~~~~G~~i~~~~~~~~~~~~~~~--~~~~~Divf~a~p~~~s-~~ 79 (335)
|||++||- |.-|..+.+-|.+++|+ +..+.-....-+.....+-. ...++.+. .+...+++|+++|++.. .+
T Consensus 1 MkIGfIGL-G~MG~~mA~nL~~~G~~---V~v~d~~~~~~~~~~~~g~~-~~~s~~e~~~~l~~~~vI~~~vp~g~~v~~ 75 (298)
T PRK12490 1 MKLGLIGL-GKMGGNMAERLREDGHE---VVGYDVNQEAVDVAGKLGIT-ARHSLEELVSKLEAPRAIWVMVPAGEVTES 75 (298)
T ss_pred CEEEEECH-HHHHHHHHHHHHHCCCE---EEEECCCHHHHHHHHHCCCE-ECCCHHHHHHHCCCCCEEEEECCCCHHHHH
T ss_conf 97999834-67689999999977994---89984998999999986995-428999999737899889997689455999
Q ss_pred HHHH---HCCCCEEEEECCCCHH
Q ss_conf 9975---0456517996145100
Q gi|254780307|r 80 MSPK---IAANGCIVIDNSSAWR 99 (335)
Q Consensus 80 ~~~~---~~~~g~~VIDlS~~~R 99 (335)
+... +.+.|..|||.|..+-
T Consensus 76 vi~~l~~~L~~g~iiID~sts~~ 98 (298)
T PRK12490 76 VLKDLYPLLSPGDIVIDGGNSRY 98 (298)
T ss_pred HHHHHHHHCCCCCEEECCCCCCH
T ss_conf 99968852699988852887899
No 138
>PTZ00117 malate dehydrogenase; Provisional
Probab=95.55 E-value=0.049 Score=31.59 Aligned_cols=69 Identities=17% Similarity=0.367 Sum_probs=43.3
Q ss_pred CCEEEEEECCCCHHHHHHHHHHHHCCCCEEEEEEEECCC--CCCEEEEC------CCCEEEEE-ECCHHHHCCCCEEEEC
Q ss_conf 961799981667789999999974499807899997476--58756002------78158998-7794363188478606
Q gi|254780307|r 1 MTFKVAVVGATGNVGREMLNIICERGFPISEVVALASER--SAGTKVPF------GKETIDVQ-DVKSYDFSDTDICLMS 71 (335)
Q Consensus 1 M~~kvaIiGatG~vG~el~~lL~~~~~p~~~l~~~~s~~--~~G~~i~~------~~~~~~~~-~~~~~~~~~~Divf~a 71 (335)
|. ||+|+|+ |.||..+.-+|..++. .|+.++.-.+ ..|+.... .+....+. .-+-++++++|+++.+
T Consensus 1 M~-KV~IIGa-G~VG~~~A~~l~~~~~--~eivLiDi~~~~a~g~a~Dl~h~~~~~~~~~~i~~~~dy~~~~daDiVVit 76 (313)
T PTZ00117 1 MK-KISIIGS-GQIGAIVGLLLLQENL--GDVYLYDVIEGVPQGKALDLKHFSTIIGVNANILGTNNYEDIKDSDVIVIT 76 (313)
T ss_pred CC-EEEEECC-CHHHHHHHHHHHHCCC--CEEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEECCCHHHHCCCCEEEEC
T ss_conf 97-8999897-9899999999970899--879999588983088998877242036898579837999996899999989
Q ss_pred CC
Q ss_conf 87
Q gi|254780307|r 72 AG 73 (335)
Q Consensus 72 ~p 73 (335)
++
T Consensus 77 AG 78 (313)
T PTZ00117 77 AG 78 (313)
T ss_pred CC
T ss_conf 89
No 139
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=95.50 E-value=0.12 Score=29.32 Aligned_cols=91 Identities=16% Similarity=0.283 Sum_probs=53.0
Q ss_pred EEEEEECCCCHHHHHHHHHHHHCCCCEEEEEEEECCCCCCEEE------ECCCCEEEEEEC-C----HHHHCCCCEEEEC
Q ss_conf 1799981667789999999974499807899997476587560------027815899877-9----4363188478606
Q gi|254780307|r 3 FKVAVVGATGNVGREMLNIICERGFPISEVVALASERSAGTKV------PFGKETIDVQDV-K----SYDFSDTDICLMS 71 (335)
Q Consensus 3 ~kvaIiGatG~vG~el~~lL~~~~~p~~~l~~~~s~~~~G~~i------~~~~~~~~~~~~-~----~~~~~~~Divf~a 71 (335)
-++.|+|+||-+|+..-++|.... .++.+++-+...-+.+ .|+.. +...+. + ...+.++|+||.+
T Consensus 29 ~~~~V~G~tG~vG~~~A~~lA~~G---a~v~lv~R~~ek~~~~a~~i~~r~g~~-~~~~~~~~~~~~~~~l~~adiV~~a 104 (194)
T cd01078 29 KTAVVLGGTGPVGQRAAVLLAREG---ARVVLVGRDLERAQKAADSLRARFGEG-VGAVETSDDAARAAAIKGADVVFAA 104 (194)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCC---CEEEEEECCHHHHHHHHHHHHHHCCCC-CCCCCCCCHHHHHHHHCCCCEEEEC
T ss_conf 889998588578999999999839---979999587888999999999970987-3113578877899774669899964
Q ss_pred CCHHHHHHHHHHH-CCCCEEEEECCCC
Q ss_conf 8758999999750-4565179961451
Q gi|254780307|r 72 AGHAVSSQMSPKI-AANGCIVIDNSSA 97 (335)
Q Consensus 72 ~p~~~s~~~~~~~-~~~g~~VIDlS~~ 97 (335)
...++..-....+ .+.+..+.|...-
T Consensus 105 ~aAGv~~~~~~~~~~k~l~Vv~DVNAv 131 (194)
T cd01078 105 GAAGVELLEKLAWAPKPLAVAADVNAV 131 (194)
T ss_pred CHHHHHHHHHHHHCCCCCEEEEECCCC
T ss_conf 277788878888508886599865899
No 140
>PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.42 E-value=0.047 Score=31.70 Aligned_cols=88 Identities=17% Similarity=0.296 Sum_probs=52.0
Q ss_pred CCEEEEEECCCCHHHHHHHHHHHHCCCCEEEEEEEECCCCCC--EEEECCCCEEEEEECCHHHHCCCCEEEECCCHHHHH
Q ss_conf 961799981667789999999974499807899997476587--560027815899877943631884786068758999
Q gi|254780307|r 1 MTFKVAVVGATGNVGREMLNIICERGFPISEVVALASERSAG--TKVPFGKETIDVQDVKSYDFSDTDICLMSAGHAVSS 78 (335)
Q Consensus 1 M~~kvaIiGatG~vG~el~~lL~~~~~p~~~l~~~~s~~~~G--~~i~~~~~~~~~~~~~~~~~~~~Divf~a~p~~~s~ 78 (335)
|| ||.|+|. |..|....+.|.+++ ..+.+....+....- +.+. .+-++.........+.++|+|+.+-+=....
T Consensus 7 ~K-kvlV~Gl-G~sG~s~a~~L~~~~-~~~~v~~~D~~~~~~~~~~l~-~~~~~~~g~~~~~~l~~~d~vV~SPGI~~~~ 82 (438)
T PRK04663 7 IK-NVVVVGL-GITGLSVVKHLRKTQ-PQLTVKVIDTRETPPGQEQLP-EDVELHSGGWNQDWLAEADLVVTNPGIALAT 82 (438)
T ss_pred CC-EEEEEEE-CHHHHHHHHHHHHCC-CCCEEEEECCCCCHHHHHHHH-CCCEEEECCCCHHHHCCCCEEEECCCCCCCC
T ss_conf 97-4999906-785899999999669-984699963988936887620-6976972788967836899999899769989
Q ss_pred HHHHHHCCCCEEEE
Q ss_conf 99975045651799
Q gi|254780307|r 79 QMSPKIAANGCIVI 92 (335)
Q Consensus 79 ~~~~~~~~~g~~VI 92 (335)
.....+.+.|+.|+
T Consensus 83 p~~~~a~~~~i~i~ 96 (438)
T PRK04663 83 PEIQPVLAKGIPVV 96 (438)
T ss_pred HHHHHHHHCCCCEE
T ss_conf 89999998699370
No 141
>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.33 E-value=0.025 Score=33.40 Aligned_cols=95 Identities=8% Similarity=0.141 Sum_probs=57.5
Q ss_pred EEEEECCCCHHHHHHHHHHHHCCCCEEEEEEEECCCCCCEEEECCCCEEEEEECCHHHHCCCCEEEECCCHHHHHHHHHH
Q ss_conf 79998166778999999997449980789999747658756002781589987794363188478606875899999975
Q gi|254780307|r 4 KVAVVGATGNVGREMLNIICERGFPISEVVALASERSAGTKVPFGKETIDVQDVKSYDFSDTDICLMSAGHAVSSQMSPK 83 (335)
Q Consensus 4 kvaIiGatG~vG~el~~lL~~~~~p~~~l~~~~s~~~~G~~i~~~~~~~~~~~~~~~~~~~~Divf~a~p~~~s~~~~~~ 83 (335)
||+|+|. |..|....+.|..+ .....+...+..-...........+..+++..+.++|+++.+-+=....++...
T Consensus 8 ~v~V~Gl-G~sG~a~~~~L~~~----~~~~~~dd~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iV~SPGI~~~~p~~~~ 82 (450)
T PRK01368 8 KIGVFGL-GKTGISVYEELQNK----YDLIVYDDLKANRDIFEELFSKNAIIALSDSRWQNLDKIVLSPGIPLTHEIVKI 82 (450)
T ss_pred EEEEEEE-CHHHHHHHHHHHHC----CCEEEEECCCCCHHHHHHHHCCCCEECCCCCCHHCCCEEEECCCCCCCCHHHHH
T ss_conf 0899958-78799999999719----998999899656478997521483602571115219999989961998999999
Q ss_pred HCCCCEEEEECC-CCHHCCCC
Q ss_conf 045651799614-51001121
Q gi|254780307|r 84 IAANGCIVIDNS-SAWRYDSD 103 (335)
Q Consensus 84 ~~~~g~~VIDlS-~~~R~~~d 103 (335)
+.++|+.|+.=- =.||..++
T Consensus 83 a~~~~i~i~~eiel~~~~~~~ 103 (450)
T PRK01368 83 AKNFNIPITSDIDLLFEKSKN 103 (450)
T ss_pred HHHCCCCEEEHHHHHHHHCCC
T ss_conf 998799587699999976679
No 142
>PRK10675 UDP-galactose-4-epimerase; Provisional
Probab=95.31 E-value=0.023 Score=33.66 Aligned_cols=28 Identities=21% Similarity=0.460 Sum_probs=24.3
Q ss_pred EEEEEECCCCHHHHHHHHHHHHCCCCEE
Q ss_conf 1799981667789999999974499807
Q gi|254780307|r 3 FKVAVVGATGNVGREMLNIICERGFPIS 30 (335)
Q Consensus 3 ~kvaIiGatG~vG~el~~lL~~~~~p~~ 30 (335)
|||-|.|++|++|..|.+.|.+++|.+.
T Consensus 1 MkvLVTGg~GFIGs~l~~~Ll~~g~~V~ 28 (338)
T PRK10675 1 MRVLVTGGSGYIGSHTCVQLLQNGHDVV 28 (338)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEE
T ss_conf 9199989876799999999997849899
No 143
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=95.23 E-value=0.074 Score=30.51 Aligned_cols=70 Identities=24% Similarity=0.362 Sum_probs=43.8
Q ss_pred EEEECCCCHHHHHHHHHHHHCC-CCEEEEEEEECCC--CCCEEEE------CC-CCEEEEEECCHHHHCCCCEEEECCCH
Q ss_conf 9998166778999999997449-9807899997476--5875600------27-81589987794363188478606875
Q gi|254780307|r 5 VAVVGATGNVGREMLNIICERG-FPISEVVALASER--SAGTKVP------FG-KETIDVQDVKSYDFSDTDICLMSAGH 74 (335)
Q Consensus 5 vaIiGatG~vG~el~~lL~~~~-~p~~~l~~~~s~~--~~G~~i~------~~-~~~~~~~~~~~~~~~~~Divf~a~p~ 74 (335)
|+|+||+|.||..+.-.|..+. +...||.++.-.. ..|+... +. .......+-..++++++|+|+.+.+.
T Consensus 1 V~IIGA~G~VG~~~a~~l~~~~~~~~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~v~~~~~~~~~~~daDvVVitag~ 80 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEEKLKGVAMDLQDAVEPLADIKVSITDDPYEAFKDADVVIITAGV 80 (263)
T ss_pred CEEECCCCHHHHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHHHCCCCCCCCEEEECCCHHHHHCCCCEEEEECCC
T ss_conf 98987797799999999982899999889999589872087999998545235787399748738983799899990577
No 144
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=95.11 E-value=0.099 Score=29.75 Aligned_cols=92 Identities=18% Similarity=0.190 Sum_probs=54.0
Q ss_pred EEEEEECCCCHHHHHHHHHHHHCCCCEEEEEEEECCCCC------CEEEECCC------CEEEEEECCHHHHCCCCEEEE
Q ss_conf 179998166778999999997449980789999747658------75600278------158998779436318847860
Q gi|254780307|r 3 FKVAVVGATGNVGREMLNIICERGFPISEVVALASERSA------GTKVPFGK------ETIDVQDVKSYDFSDTDICLM 70 (335)
Q Consensus 3 ~kvaIiGatG~vG~el~~lL~~~~~p~~~l~~~~s~~~~------G~~i~~~~------~~~~~~~~~~~~~~~~Divf~ 70 (335)
-||+|+|+ |-=|..|-.+|.+++ +.+. ...+++.. .+...+.. +.+....--.+...++|++++
T Consensus 7 ~KI~ViGa-GawGTALA~~la~n~-~~v~--w~r~~~~~~~In~~~~N~kyL~~~i~Lp~~i~~t~dl~~a~~~adiii~ 82 (340)
T PRK12439 7 PKVVVLGG-GSWGTTVASICARRG-PTLQ--WVRSEETAKDINDNHRNSRYLGNDVVLSDTLRATTDFTEAANCADVVVM 82 (340)
T ss_pred CCEEEECC-CHHHHHHHHHHHHCC-CEEE--EECCHHHHHHHHHHCCCCCCCCCCCCCCCCEEEECCHHHHHHCCCEEEE
T ss_conf 92899896-999999999999589-9899--9689999999998288876899875589872897899999826998999
Q ss_pred CCCHHHHHHHHHHH---CCCCEEEEECCCCH
Q ss_conf 68758999999750---45651799614510
Q gi|254780307|r 71 SAGHAVSSQMSPKI---AANGCIVIDNSSAW 98 (335)
Q Consensus 71 a~p~~~s~~~~~~~---~~~g~~VIDlS~~~ 98 (335)
|.|+..-+++.+++ ....+.+|.++-=+
T Consensus 83 avPS~~~r~~~~~l~~~l~~~~~iv~~sKGi 113 (340)
T PRK12439 83 GVPSHGFRGVLTELAKELRPWVPVVSLVKGL 113 (340)
T ss_pred ECCCHHHHHHHHHHHHHCCCCCEEEEECCCC
T ss_conf 3680899999999986557887599732750
No 145
>pfam00899 ThiF ThiF family. This family contains a repeated domain in ubiquitin activating enzyme E1 and members of the bacterial ThiF/MoeB/HesA family.
Probab=95.06 E-value=0.24 Score=27.42 Aligned_cols=90 Identities=14% Similarity=0.251 Sum_probs=54.8
Q ss_pred EEEEEECCCCHHHHHHHHHHHHCCCCEEEEEEEEC----CCCCCEEEECC-------------------CCEEEEE----
Q ss_conf 17999816677899999999744998078999974----76587560027-------------------8158998----
Q gi|254780307|r 3 FKVAVVGATGNVGREMLNIICERGFPISEVVALAS----ERSAGTKVPFG-------------------KETIDVQ---- 55 (335)
Q Consensus 3 ~kvaIiGatG~vG~el~~lL~~~~~p~~~l~~~~s----~~~~G~~i~~~-------------------~~~~~~~---- 55 (335)
-||.|+|+ |-+|.++.+.|...+.- ++..+.. .+..++++-+. .....++
T Consensus 2 skVlivG~-GglG~~~~~~La~~Gvg--~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~i~~~~~ 78 (134)
T pfam00899 2 SRVLVVGA-GGLGSPAAEYLARAGVG--KLTLVDFDTVELSNLNRQILFTESDIGKPKAEVAKERLRAINPDVEVEAYPE 78 (134)
T ss_pred CEEEEECC-CHHHHHHHHHHHHHCCC--EEEEEECCCCCCCCCCCEEECCHHHCCCEEHHHHHHHHHHHCCCCEEEEEEC
T ss_conf 88999898-88999999999993897--4999989567632227224233646688107999999997789958999925
Q ss_pred ECCHH----HHCCCCEEEECCCHHHHHHHHHHH-CCCCEEEEECC
Q ss_conf 77943----631884786068758999999750-45651799614
Q gi|254780307|r 56 DVKSY----DFSDTDICLMSAGHAVSSQMSPKI-AANGCIVIDNS 95 (335)
Q Consensus 56 ~~~~~----~~~~~Divf~a~p~~~s~~~~~~~-~~~g~~VIDlS 95 (335)
.+++. .++++|++|.|+.+-.++.+..++ .+.++.+|+.+
T Consensus 79 ~i~~~~~~~~~~~~DvVi~~~Dn~~~r~~ln~~c~~~~ip~i~~~ 123 (134)
T pfam00899 79 RLTPENLEELLKGADLVVDALDNFAARYLLNDACVKRGIPLISAG 123 (134)
T ss_pred CCCHHHHHHCCCCCCEEEECCCCHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 679778764264488999998999999999999998599899955
No 146
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=95.06 E-value=0.025 Score=33.34 Aligned_cols=64 Identities=17% Similarity=0.247 Sum_probs=37.5
Q ss_pred CCEEEEEECCCCHHHHHHHHHHHHCCCCEEEEEEEECCCCCCEEEECCCCEEEEEECCHHHHCCCCEEEECCC
Q ss_conf 9617999816677899999999744998078999974765875600278158998779436318847860687
Q gi|254780307|r 1 MTFKVAVVGATGNVGREMLNIICERGFPISEVVALASERSAGTKVPFGKETIDVQDVKSYDFSDTDICLMSAG 73 (335)
Q Consensus 1 M~~kvaIiGatG~vG~el~~lL~~~~~p~~~l~~~~s~~~~G~~i~~~~~~~~~~~~~~~~~~~~Divf~a~p 73 (335)
+.++++|+|+ -.--.++++.|.++++. +..++-++. ..........+..++.+.++|++++-.|
T Consensus 1 ~g~~iaviGG-D~Rq~~l~~~L~~~g~~---V~~~gf~~~-----~~~~~~~~~~~~~~~~~~~~d~iIlPvp 64 (296)
T PRK08306 1 TGMHIAVIGG-DARQLELIRKLVELGAK---VSLVGFDQL-----DHGFTGVAKCSSLEEALSDVDVIILPVP 64 (296)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCCCE---EEEEECCCC-----CCCCCCEEEECCHHHHHHCCCEEEECCC
T ss_conf 9948999787-58999999999977997---999835765-----5566761773467888723999997883
No 147
>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase. This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.
Probab=95.04 E-value=0.26 Score=27.25 Aligned_cols=112 Identities=14% Similarity=0.203 Sum_probs=64.0
Q ss_pred EEEEEECCCCHHHHHHHHHHHHCCCCEEEEEEEECCCCCCEEE--ECCCC--EEEEEECCHH-----HHCCCCEEEECCC
Q ss_conf 1799981667789999999974499807899997476587560--02781--5899877943-----6318847860687
Q gi|254780307|r 3 FKVAVVGATGNVGREMLNIICERGFPISEVVALASERSAGTKV--PFGKE--TIDVQDVKSY-----DFSDTDICLMSAG 73 (335)
Q Consensus 3 ~kvaIiGatG~vG~el~~lL~~~~~p~~~l~~~~s~~~~G~~i--~~~~~--~~~~~~~~~~-----~~~~~Divf~a~p 73 (335)
-+|-|-|++|++|.+|++.|.++..| ..+..++..+..-..+ .+... ...+.|+.+. .+.++|+||-++-
T Consensus 5 K~ILVTGGaGfIGS~lv~~Ll~~~~~-~~iii~~~de~~~~~l~~~~~~~~i~f~~gDIrD~~~l~~~~~~vD~VfHaAA 83 (324)
T TIGR03589 5 KSILITGGTGSFGKAFISRLLENYNP-KKIIIYSRDELKQWEMQQKFPAPCLRFFIGDVRDKERLTRALRGVDYVVHAAA 83 (324)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCC-CEEEEECCCCCCHHHHHHHCCCCCEEEEECCCCCHHHHHHHHCCCCEEEECCC
T ss_conf 99999079779999999999972998-28999668640328898516898759996777788999976348889999462
Q ss_pred H-HH-----------------HHHHHHHHCCCCE-EEEECCCCHHCCCCCCCCCCCHHHHH
Q ss_conf 5-89-----------------9999975045651-79961451001121112364101111
Q gi|254780307|r 74 H-AV-----------------SSQMSPKIAANGC-IVIDNSSAWRYDSDVPLIVPEVNPQT 115 (335)
Q Consensus 74 ~-~~-----------------s~~~~~~~~~~g~-~VIDlS~~~R~~~d~p~~lPein~~~ 115 (335)
. .+ +..+.+.+.+.|+ ++|=+|+|--.+|--||+.--.-.|.
T Consensus 84 ~khVp~se~nP~e~i~tNV~Gt~nlleaa~~~~Vkk~V~iSTDka~~P~n~yGasK~~~E~ 144 (324)
T TIGR03589 84 LKQVPAAEYNPFECIRTNINGAQNVIDAAIDNGVKRVVALSTDKAANPINLYGATKLASDK 144 (324)
T ss_pred CCCCCHHHHCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCHHHHHH
T ss_conf 7767267769899999997999999999885554317862268888996743123676799
No 148
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=95.03 E-value=0.14 Score=28.75 Aligned_cols=95 Identities=22% Similarity=0.298 Sum_probs=57.7
Q ss_pred CCEEEEEECCCCHHHHHHHHHHHHCCCCEEEEEEEECCCCCCE----EEE--------CC---CC--E---EEEEECCH-
Q ss_conf 9617999816677899999999744998078999974765875----600--------27---81--5---89987794-
Q gi|254780307|r 1 MTFKVAVVGATGNVGREMLNIICERGFPISEVVALASERSAGT----KVP--------FG---KE--T---IDVQDVKS- 59 (335)
Q Consensus 1 M~~kvaIiGatG~vG~el~~lL~~~~~p~~~l~~~~s~~~~G~----~i~--------~~---~~--~---~~~~~~~~- 59 (335)
|+ ||||+|+ |..|..+..++..+++++ ..+..+..+-+ .+. .+ .. + -.+.-.++
T Consensus 2 i~-~VaViGa-G~mG~giA~~~a~~G~~V---~l~D~~~~~l~~a~~~i~~~l~~~~~~g~~~~~~~~~~~~ri~~~~~l 76 (308)
T PRK06129 2 MG-SIAIVGA-GLIGRAWAIVFARAGHRV---RLWDADPAALAAAPAYIAGRLEDLAAFDLLDGESPDAVLARIRATDSL 76 (308)
T ss_pred CC-EEEEECC-CHHHHHHHHHHHHCCCCE---EEEECCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCEEECCCH
T ss_conf 98-7999777-899999999998589938---999898899999999999999999976999876599998350722888
Q ss_pred -HHHCCCCEEEECCCHHHHHH--H---HHHHCCCCEEEEECCCCHHC
Q ss_conf -36318847860687589999--9---97504565179961451001
Q gi|254780307|r 60 -YDFSDTDICLMSAGHAVSSQ--M---SPKIAANGCIVIDNSSAWRY 100 (335)
Q Consensus 60 -~~~~~~Divf~a~p~~~s~~--~---~~~~~~~g~~VIDlS~~~R~ 100 (335)
+.++++|+|+-|.|-....+ + ...+...++++-+++|.+..
T Consensus 77 ~~al~~adlViEav~E~l~iK~~lf~~le~~~~~~~IlaSnTSsl~i 123 (308)
T PRK06129 77 ADAVADADYVQESAPENLELKRALFAELDALAPPHAILASSTSALLA 123 (308)
T ss_pred HHHHCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCH
T ss_conf 99847499999998077999999999999656985589845553889
No 149
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=95.02 E-value=0.1 Score=29.69 Aligned_cols=69 Identities=25% Similarity=0.295 Sum_probs=40.0
Q ss_pred EEEEEECCCCHHHHHHHHHHHHCCCCEEEEEEEECC--CCCCEEEEC------CCCEEEEEECCHHHHCCCCEEEECCC
Q ss_conf 179998166778999999997449980789999747--658756002------78158998779436318847860687
Q gi|254780307|r 3 FKVAVVGATGNVGREMLNIICERGFPISEVVALASE--RSAGTKVPF------GKETIDVQDVKSYDFSDTDICLMSAG 73 (335)
Q Consensus 3 ~kvaIiGatG~vG~el~~lL~~~~~p~~~l~~~~s~--~~~G~~i~~------~~~~~~~~~~~~~~~~~~Divf~a~p 73 (335)
.||+|+|+ |.||..+.-.|..++ -..||.++.-. ...|+.... .........-+-++++++|+|+.+++
T Consensus 4 ~Kv~IIGa-G~VG~~~A~~l~~~~-l~~el~L~Di~~~~a~g~a~Dl~h~~~~~~~~~v~~~~d~~~~~~aDvVVitAG 80 (312)
T cd05293 4 NKVTVVGV-GQVGMACAISILAKG-LADELVLVDVVEDKLKGEAMDLQHGSAFLKNPKIEADKDYSVTANSKVVIVTAG 80 (312)
T ss_pred CEEEEECC-CHHHHHHHHHHHHCC-CCCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCHHHHCCCCEEEECCC
T ss_conf 86999897-888999999999669-988799993889833268888660401279855993799999689999998899
No 150
>KOG2711 consensus
Probab=94.96 E-value=0.27 Score=27.11 Aligned_cols=104 Identities=25% Similarity=0.388 Sum_probs=64.5
Q ss_pred CCEEEEEECCCCHHHHHHHHHHHH--CCCCEE--EEEEE-ECCCCCCE--EEE--CC--CCEEE----------EEECCH
Q ss_conf 961799981667789999999974--499807--89999-74765875--600--27--81589----------987794
Q gi|254780307|r 1 MTFKVAVVGATGNVGREMLNIICE--RGFPIS--EVVAL-ASERSAGT--KVP--FG--KETID----------VQDVKS 59 (335)
Q Consensus 1 M~~kvaIiGatG~vG~el~~lL~~--~~~p~~--~l~~~-~s~~~~G~--~i~--~~--~~~~~----------~~~~~~ 59 (335)
++.||+|+|+ |.=|..+.+++.+ ..||.+ ++... ..++-.|+ .+. ++ .+..+ +.-.++
T Consensus 20 ~~~kV~ivGs-GnWGsaiaki~~~n~~~~~~f~~~Vrmwv~ee~i~~~~~~L~eiIN~~heN~KYlpg~~lP~NvvAv~d 98 (372)
T KOG2711 20 DPLKVCIVGS-GNWGSAIAKIVGENVKEFPIFDPQVRMWVFEEEINGEAEKLTEIINSRHENVKYLPGIKLPENVVAVPD 98 (372)
T ss_pred CCEEEEEECC-CHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEECCH
T ss_conf 7537999816-808999999986525405566730367775013377057899875155634233678659977676523
Q ss_pred --HHHCCCCEEEECCCHHHHHHHHHHHC---CCCEEEEECCCCHHCCCCCC
Q ss_conf --36318847860687589999997504---56517996145100112111
Q gi|254780307|r 60 --YDFSDTDICLMSAGHAVSSQMSPKIA---ANGCIVIDNSSAWRYDSDVP 105 (335)
Q Consensus 60 --~~~~~~Divf~a~p~~~s~~~~~~~~---~~g~~VIDlS~~~R~~~d~p 105 (335)
+...++|++++++||.....+.+++. +.++..|+|+--|...++-|
T Consensus 99 l~ea~~dADilvf~vPhQf~~~ic~~l~g~vk~~~~aISL~KG~e~~~~g~ 149 (372)
T KOG2711 99 LVEAAKDADILVFVVPHQFIPRICEQLKGYVKPGATAISLIKGVEVGEEGP 149 (372)
T ss_pred HHHHHCCCCEEEEECCHHHHHHHHHHHHCCCCCCCEEEEEECCEECCCCCC
T ss_conf 998843388899948715479999998542579980788540414168888
No 151
>COG5322 Predicted dehydrogenase [General function prediction only]
Probab=94.92 E-value=0.028 Score=33.12 Aligned_cols=24 Identities=13% Similarity=0.008 Sum_probs=9.9
Q ss_pred CHHHHHHHHH---HHCCCCEEEEECCC
Q ss_conf 7589999997---50456517996145
Q gi|254780307|r 73 GHAVSSQMSP---KIAANGCIVIDNSS 96 (335)
Q Consensus 73 p~~~s~~~~~---~~~~~g~~VIDlS~ 96 (335)
|...++++.. .+.+.|.-|.-|.+
T Consensus 89 pkaatrrvl~a~~~a~~~Ga~V~gLGg 115 (351)
T COG5322 89 PKAATRRVLNAMALAQKLGADVTGLGG 115 (351)
T ss_pred HHHHHHHHHHHHHHHHHCCCEEEEECC
T ss_conf 799999999999999871871784053
No 152
>PRK10217 dTDP-glucose 4,6-dehydratase; Provisional
Probab=94.86 E-value=0.051 Score=31.48 Aligned_cols=26 Identities=23% Similarity=0.482 Sum_probs=22.2
Q ss_pred CCEEEEEECCCCHHHHHHHHHHHHCCC
Q ss_conf 961799981667789999999974499
Q gi|254780307|r 1 MTFKVAVVGATGNVGREMLNIICERGF 27 (335)
Q Consensus 1 M~~kvaIiGatG~vG~el~~lL~~~~~ 27 (335)
|| ||.|.|++|++|..|++.|.+++.
T Consensus 1 MK-kILVTGg~GFIGs~Lv~~Ll~~~~ 26 (355)
T PRK10217 1 MR-KILITGGAGFIGSALVRYIINETS 26 (355)
T ss_pred CC-EEEECCCCCHHHHHHHHHHHHCCC
T ss_conf 99-699937875799999999997699
No 153
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.82 E-value=0.065 Score=30.87 Aligned_cols=95 Identities=21% Similarity=0.225 Sum_probs=55.8
Q ss_pred EEEEEECCCCHHHHHHHHHHHHCCCCEEEEEEEECCCCCCEEEECCCCEEEEEECCHHHHCCCCEEEECCCHHHHHHHHH
Q ss_conf 17999816677899999999744998078999974765875600278158998779436318847860687589999997
Q gi|254780307|r 3 FKVAVVGATGNVGREMLNIICERGFPISEVVALASERSAGTKVPFGKETIDVQDVKSYDFSDTDICLMSAGHAVSSQMSP 82 (335)
Q Consensus 3 ~kvaIiGatG~vG~el~~lL~~~~~p~~~l~~~~s~~~~G~~i~~~~~~~~~~~~~~~~~~~~Divf~a~p~~~s~~~~~ 82 (335)
-||+|+|. |..|....++|.++++ ++.........-+.....+-...........+.++|+|+.+-+=........
T Consensus 13 k~V~V~Gl-G~sG~a~a~~L~~~G~---~v~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vV~SPGI~~~~p~l~ 88 (487)
T PRK03369 13 APVLVAGA-GVTGRAVLAALTRFGA---RPTVCDDDPDALRPHAERGVATVSSSDAVQQIADYALVVTSPGFPPTAPVLA 88 (487)
T ss_pred CEEEEEEE-CHHHHHHHHHHHHCCC---EEEEEECCCHHHHHHHHCCCCEECCCCCHHHHCCCCEEEECCCCCCCCHHHH
T ss_conf 98999915-6838999999997869---7999989825779998659948637622656467788998995799899999
Q ss_pred HHCCCCEEEEE-CCCCHHCC
Q ss_conf 50456517996-14510011
Q gi|254780307|r 83 KIAANGCIVID-NSSAWRYD 101 (335)
Q Consensus 83 ~~~~~g~~VID-lS~~~R~~ 101 (335)
.+.++|+.|+. .-=++|++
T Consensus 89 ~a~~~gi~i~~eieL~~~~~ 108 (487)
T PRK03369 89 AAAAAGVPIWGDVELAWRLD 108 (487)
T ss_pred HHHHCCCCEEEHHHHHHHHH
T ss_conf 99988990765999999987
No 154
>PRK08818 prephenate dehydrogenase; Provisional
Probab=94.79 E-value=0.23 Score=27.58 Aligned_cols=79 Identities=19% Similarity=0.304 Sum_probs=55.0
Q ss_pred EEEEECCCCHHHHHHHHHHHHCCCCEEEEEEEECCCCCCEEEECCCCEEEEEECCHHH-HCCCCEEEECCCHHHHHHHHH
Q ss_conf 7999816677899999999744998078999974765875600278158998779436-318847860687589999997
Q gi|254780307|r 4 KVAVVGATGNVGREMLNIICERGFPISEVVALASERSAGTKVPFGKETIDVQDVKSYD-FSDTDICLMSAGHAVSSQMSP 82 (335)
Q Consensus 4 kvaIiGatG~vG~el~~lL~~~~~p~~~l~~~~s~~~~G~~i~~~~~~~~~~~~~~~~-~~~~Divf~a~p~~~s~~~~~ 82 (335)
.|+|+|.+|--|+=+-+.|.++ ..+..++..-..++ .++.+. ....|+|+++.|-+.+..+.+
T Consensus 6 iV~iiG~~~~~G~w~a~flr~~----~~~~vig~dp~~~~------------s~D~~~l~~~aDIVIisVPI~~T~~vI~ 69 (373)
T PRK08818 6 VVGIVGIAGAYGRWLAQFLRTR----MQLEVIGYDPADPG------------SLDPATLLARADVLVFSAPIRHTAALIE 69 (373)
T ss_pred EEEEEECCCHHHHHHHHHHHHC----CCEEEEECCCCCCC------------CCCHHHHHHCCCEEEEECCHHHHHHHHH
T ss_conf 3899626632658999998743----66178854887756------------6698898623898999778032388998
Q ss_pred H---HC---CCCEEEEECCCCH
Q ss_conf 5---04---5651799614510
Q gi|254780307|r 83 K---IA---ANGCIVIDNSSAW 98 (335)
Q Consensus 83 ~---~~---~~g~~VIDlS~~~ 98 (335)
+ .+ ++|..+.|..|-=
T Consensus 70 E~~~~Ap~~~~gsLLmDVTSIK 91 (373)
T PRK08818 70 RYVALAGARAAGQLWLDVTSIK 91 (373)
T ss_pred HHHHCCCCCCCCCEEEEEHHHH
T ss_conf 8774165567885688503340
No 155
>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2. UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=94.65 E-value=0.2 Score=27.94 Aligned_cols=108 Identities=19% Similarity=0.292 Sum_probs=67.7
Q ss_pred EEEEECCCCHHHHHHHHHHHHCCCCEEEEEE-------------EECCCCCCEEEE--------CCCCEEEEE----EC-
Q ss_conf 7999816677899999999744998078999-------------974765875600--------278158998----77-
Q gi|254780307|r 4 KVAVVGATGNVGREMLNIICERGFPISEVVA-------------LASERSAGTKVP--------FGKETIDVQ----DV- 57 (335)
Q Consensus 4 kvaIiGatG~vG~el~~lL~~~~~p~~~l~~-------------~~s~~~~G~~i~--------~~~~~~~~~----~~- 57 (335)
||.|+|+ |-+|-|+++.|...++-.+.+.- +.+++..|+.-. ....+..+. .+
T Consensus 1 KVlvvGa-GglG~e~lk~La~~Gvg~i~ivD~D~Ie~SNLnRQfLf~~~diGk~Ka~~a~~~l~~~Np~v~I~~~~~~i~ 79 (312)
T cd01489 1 KVLVVGA-GGIGCELLKNLVLTGFGEIHIIDLDTIDLSNLNRQFLFRKKHVGKSKAQVAKEAVLSFNPNVKIVAYHANIK 79 (312)
T ss_pred CEEEECC-CHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCHHHCCCCHHHHHHHHHHHHCCCCEEEEECCCCC
T ss_conf 9899888-888999999999828985999719922610146682768221887099999999998888967998616766
Q ss_pred ----CHHHHCCCCEEEECCCHHHHHHHHHHH-CCCCEEEEECCCCHHCCCCCCCCCCCHHH
Q ss_conf ----943631884786068758999999750-45651799614510011211123641011
Q gi|254780307|r 58 ----KSYDFSDTDICLMSAGHAVSSQMSPKI-AANGCIVIDNSSAWRYDSDVPLIVPEVNP 113 (335)
Q Consensus 58 ----~~~~~~~~Divf~a~p~~~s~~~~~~~-~~~g~~VIDlS~~~R~~~d~p~~lPein~ 113 (335)
..+-|++.|+|+.|+.+-.++.++.+. ...+...||-+. .-+.-.+-.++|...+
T Consensus 80 ~~~~~~~f~~~~DvVi~alDN~~aR~~vN~~C~~~~~PlIegGt-~G~~Gqv~viiP~~T~ 139 (312)
T cd01489 80 DPDFNVEFFKQFDLVFNALDNLAARRHVNKMCLAADVPLIESGT-TGFLGQVQVIKKGKTE 139 (312)
T ss_pred CCCCCHHHHHHCCEEEECCCCHHHHHHHHHHHHHCCCCEEEEEC-CCCEEEEEEEECCCCC
T ss_conf 86434988962999997667899999999999983997597202-4641379998489756
No 156
>PRK07660 consensus
Probab=94.59 E-value=0.12 Score=29.25 Aligned_cols=97 Identities=15% Similarity=0.264 Sum_probs=59.5
Q ss_pred CCE-EEEEECCCCHHHHHHHHHHHHCCCCEEEEEEEECCCCC-CEE---E--------EC-----CCCEEE---EEE-CC
Q ss_conf 961-79998166778999999997449980789999747658-756---0--------02-----781589---987-79
Q gi|254780307|r 1 MTF-KVAVVGATGNVGREMLNIICERGFPISEVVALASERSA-GTK---V--------PF-----GKETID---VQD-VK 58 (335)
Q Consensus 1 M~~-kvaIiGatG~vG~el~~lL~~~~~p~~~l~~~~s~~~~-G~~---i--------~~-----~~~~~~---~~~-~~ 58 (335)
|.+ ||+|+|| |..|..+-.++..+++++ .++..+... .+. + .. ...+.. +.- .+
T Consensus 1 M~Ik~VaViGa-G~MG~gIA~~~a~~G~~V---~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~ 76 (283)
T PRK07660 1 MGVQKIVVIGA-GQMGSGIAQVCAMAGYDV---KVQDLKQEQLDRGLAIITKNLARQVEKGRMKEEEKEATLNRLTVTLD 76 (283)
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHHCCCCE---EEEECCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCC
T ss_conf 99788999896-989999999999669818---99979889999999999999999987058998999999835877689
Q ss_pred HHHHCCCCEEEECCCHHHHHH--H---HHHHCCCCEEEEECCCCHHCC
Q ss_conf 436318847860687589999--9---975045651799614510011
Q gi|254780307|r 59 SYDFSDTDICLMSAGHAVSSQ--M---SPKIAANGCIVIDNSSAWRYD 101 (335)
Q Consensus 59 ~~~~~~~Divf~a~p~~~s~~--~---~~~~~~~g~~VIDlS~~~R~~ 101 (335)
-..++++|+|+-|.|-+...+ + ..++...++++-+++|.+...
T Consensus 77 ~~~~~~aDlViEav~E~l~iK~~lf~~l~~~~~~~~IlaSNTS~l~i~ 124 (283)
T PRK07660 77 LDCVKEADLIIEAAVEKMDIKKKIFANLDEIAPEHAILATNTSSLPIT 124 (283)
T ss_pred HHHHCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCCCH
T ss_conf 899768999998785754442999999996479971898658888732
No 157
>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3. UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=94.57 E-value=0.19 Score=28.08 Aligned_cols=107 Identities=19% Similarity=0.289 Sum_probs=63.1
Q ss_pred EEEEECCCCHHHHHHHHHHHHCCCCEEEEEEE-------------ECCCCCCEEEE--------CCCCEE-------EEE
Q ss_conf 79998166778999999997449980789999-------------74765875600--------278158-------998
Q gi|254780307|r 4 KVAVVGATGNVGREMLNIICERGFPISEVVAL-------------ASERSAGTKVP--------FGKETI-------DVQ 55 (335)
Q Consensus 4 kvaIiGatG~vG~el~~lL~~~~~p~~~l~~~-------------~s~~~~G~~i~--------~~~~~~-------~~~ 55 (335)
||.|+|+ |-+|.|+++-|...++-.+.+.-. ..++..|+.-. ...... .++
T Consensus 1 kvlvvG~-GglG~e~~k~la~~Gvg~i~ivD~d~i~~sNL~rQflf~~~dvG~~Ka~~a~~~i~~~np~v~v~~~~~~i~ 79 (291)
T cd01488 1 KILVIGA-GGLGCELLKNLALSGFRNIHVIDMDTIDVSNLNRQFLFREKDIGKPKAEVAAKFVNDRVPGVNVTPHFGKIQ 79 (291)
T ss_pred CEEEECC-CHHHHHHHHHHHHCCCCEEEEECCCEECCCCCCCCCCCCHHHCCCCHHHHHHHHHHHHCCCCEEEEEECCHH
T ss_conf 9899928-888999999999848985999739934413565674676553687899999999998789978998505310
Q ss_pred ECCHHHHCCCCEEEECCCHHHHHHHHHHH-C--------CCCEEEEECCCCHHCCCCCCCCCCCHH
Q ss_conf 77943631884786068758999999750-4--------565179961451001121112364101
Q gi|254780307|r 56 DVKSYDFSDTDICLMSAGHAVSSQMSPKI-A--------ANGCIVIDNSSAWRYDSDVPLIVPEVN 112 (335)
Q Consensus 56 ~~~~~~~~~~Divf~a~p~~~s~~~~~~~-~--------~~g~~VIDlS~~~R~~~d~p~~lPein 112 (335)
+.+.+-|++.|+|+.|+.+-.++.|+... . +..+..||-. ..++.-.+-.++|...
T Consensus 80 ~~~~~f~~~fdvVi~~lDn~~aR~~vN~~~v~~~~~~~~~~~~PlidgG-t~G~~Gq~~vi~p~~t 144 (291)
T cd01488 80 DKDEEFYRQFNIIICGLDSIEARRWINGTLVSLLLYEDPESIIPLIDGG-TEGFKGHARVILPGIT 144 (291)
T ss_pred HCCHHHHHHCCEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEECC-CCCCCEEEEEEECCCC
T ss_conf 0789899519999988789999999999998743135544577468602-5665304999818996
No 158
>pfam02670 DXP_reductoisom 1-deoxy-D-xylulose 5-phosphate reductoisomerase. This is a family of 1-deoxy-D-xylulose 5-phosphate reductoisomerases. This enzyme catalyses the formation of 2-C-methyl-D-erythritol 4-phosphate from 1-deoxy-D-xylulose-5-phosphate in the presence of NADPH. This reaction is part of the terpenoid biosynthesis pathway.
Probab=94.49 E-value=0.097 Score=29.81 Aligned_cols=37 Identities=32% Similarity=0.580 Sum_probs=29.6
Q ss_pred EEEECCCCHHHHHHHHHHHHCCCCEEEEEEEECCCCCC
Q ss_conf 99981667789999999974499807899997476587
Q gi|254780307|r 5 VAVVGATGNVGREMLNIICERGFPISEVVALASERSAG 42 (335)
Q Consensus 5 vaIiGatG~vG~el~~lL~~~~~p~~~l~~~~s~~~~G 42 (335)
|+|+|+||-+|+.-++++.++. ..+++..++..++..
T Consensus 1 I~IlGsTGSIG~~tL~Vi~~~~-~~f~v~~Lsa~~N~~ 37 (129)
T pfam02670 1 ITILGSTGSIGTQTLDVIRRNP-DRFEVVALSAGRNVE 37 (129)
T ss_pred CEEECCCCHHHHHHHHHHHHCC-CCEEEEEEEECCCHH
T ss_conf 9897678688999999999595-671899998347899
No 159
>PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated
Probab=94.48 E-value=0.13 Score=29.02 Aligned_cols=66 Identities=29% Similarity=0.508 Sum_probs=39.9
Q ss_pred EEEEECCCCHHHHHHHHHHHHCCCCEEEEEEEECCCCCCEEEECCCCEEEEEE----CC-----HHHHCCCCEEEECCC
Q ss_conf 79998166778999999997449980789999747658756002781589987----79-----436318847860687
Q gi|254780307|r 4 KVAVVGATGNVGREMLNIICERGFPISEVVALASERSAGTKVPFGKETIDVQD----VK-----SYDFSDTDICLMSAG 73 (335)
Q Consensus 4 kvaIiGatG~vG~el~~lL~~~~~p~~~l~~~~s~~~~G~~i~~~~~~~~~~~----~~-----~~~~~~~Divf~a~p 73 (335)
.|+|-||||-.|++|++.|..++ .++.+++++... -.+.+++++..++- .. +..++++||.++--|
T Consensus 182 TV~VTGASG~LG~aL~k~l~~~G---AKVIalTs~~~~-i~~~~~~~~~~~~~i~W~~G~E~~L~~~L~kiDILILNHG 256 (410)
T PRK07424 182 TVAVTGASGTLGQALLKELHQQG---AKVIALTSNSDK-IPLEINGEDLPVKTIHWQVGQEAALAELLEKVDILVINHG 256 (410)
T ss_pred EEEEECCCCHHHHHHHHHHHHCC---CEEEEEECCCCC-CCCCCCCCCCCCEEEEEECCCHHHHHHHHHHCCEEEECCC
T ss_conf 79995477377899999999779---989999358986-5534466546712786432888898888864689988488
No 160
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.47 E-value=0.14 Score=28.81 Aligned_cols=96 Identities=21% Similarity=0.286 Sum_probs=58.3
Q ss_pred CCE-EEEEECCCCHHHHHHHHHHHHCCCCEEEEEEEECCCCC---CE-EEE-----------CCCC----E--EEEEECC
Q ss_conf 961-79998166778999999997449980789999747658---75-600-----------2781----5--8998779
Q gi|254780307|r 1 MTF-KVAVVGATGNVGREMLNIICERGFPISEVVALASERSA---GT-KVP-----------FGKE----T--IDVQDVK 58 (335)
Q Consensus 1 M~~-kvaIiGatG~vG~el~~lL~~~~~p~~~l~~~~s~~~~---G~-~i~-----------~~~~----~--~~~~~~~ 58 (335)
|.+ ||+|+|| |..|..+-.++..+++++ ..+..+..+ ++ .+. .... . -.+.-.+
T Consensus 1 M~i~~VaViGa-G~MG~gIA~~~a~~G~~V---~l~D~~~~~l~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 76 (288)
T PRK08293 1 MTIKKVTVAGA-GVLGSQIAFQTAFKGFDV---TIYDISEEALDAAKRRLAKLADRYVRDLHLTDEAFAAAAKNRITFTT 76 (288)
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHHCCCCE---EEEECCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCC
T ss_conf 99578999897-889999999999579928---99989889999999999999999997059991789999980773058
Q ss_pred H--HHHCCCCEEEECCCHHHHHH--H---HHHHCCCCEEEEECCCCHHC
Q ss_conf 4--36318847860687589999--9---97504565179961451001
Q gi|254780307|r 59 S--YDFSDTDICLMSAGHAVSSQ--M---SPKIAANGCIVIDNSSAWRY 100 (335)
Q Consensus 59 ~--~~~~~~Divf~a~p~~~s~~--~---~~~~~~~g~~VIDlS~~~R~ 100 (335)
+ ..++++|+|+-|.|-+...+ + .++....++++-+++|.+..
T Consensus 77 dl~~a~~~aDlViEav~E~l~iK~~lf~~le~~~~~~~IlaSNTSsl~i 125 (288)
T PRK08293 77 DLAQAVKDADLVIEAVPEDPEIKGDFYEQLAEVAPEKTIFATNSSTLLP 125 (288)
T ss_pred CHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCH
T ss_conf 9899846699999978087999999999999746776699866876765
No 161
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=94.46 E-value=0.29 Score=26.96 Aligned_cols=92 Identities=14% Similarity=0.194 Sum_probs=56.7
Q ss_pred EEEEECCCCHHHHHHHHHHHHCCCCEEEEEEEEC----CCCCCEEEEC-------------------CCCEEEEE----E
Q ss_conf 7999816677899999999744998078999974----7658756002-------------------78158998----7
Q gi|254780307|r 4 KVAVVGATGNVGREMLNIICERGFPISEVVALAS----ERSAGTKVPF-------------------GKETIDVQ----D 56 (335)
Q Consensus 4 kvaIiGatG~vG~el~~lL~~~~~p~~~l~~~~s----~~~~G~~i~~-------------------~~~~~~~~----~ 56 (335)
||.|+|+ |-+|.++.+.|...+. .++..+.. .+..+++.-+ ......+. .
T Consensus 1 kVlivG~-GglG~~va~~L~~~Gv--~~i~ivD~D~v~~~Nl~Rq~~~~~~dvG~~Ka~~a~~~l~~~np~v~i~~~~~~ 77 (143)
T cd01483 1 RVLLVGL-GGLGSEIALNLARSGV--GKITLIDFDTVELSNLNRQFLARQADIGKPKAEVAARRLNELNPGVNVTAVPEG 77 (143)
T ss_pred CEEEECC-CHHHHHHHHHHHHHCC--CCEEEEECCCCCCCCCCCCCCCCHHHHCCHHHHHHHHHHHHHCCCCEEEEEECC
T ss_conf 9999997-9899999999999379--719999789875001464225898894922489999999856898389999456
Q ss_pred CCH----HHHCCCCEEEECCCHHHHHHHHHHH-CCCCEEEEECCCCH
Q ss_conf 794----3631884786068758999999750-45651799614510
Q gi|254780307|r 57 VKS----YDFSDTDICLMSAGHAVSSQMSPKI-AANGCIVIDNSSAW 98 (335)
Q Consensus 57 ~~~----~~~~~~Divf~a~p~~~s~~~~~~~-~~~g~~VIDlS~~~ 98 (335)
+++ ..++++|++|.|+.+-.++.+..++ .+.++.+|+-+...
T Consensus 78 ~~~~~~~~~~~~~dvvi~~~D~~~~r~~l~~~~~~~~ip~i~~~~~g 124 (143)
T cd01483 78 ISEDNLDDFLDGVDLVIDAIDNIAVRRALNRACKELGIPVIDAGGLG 124 (143)
T ss_pred CCHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCC
T ss_conf 89646999975999999877999999999999998699889963667
No 162
>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent; InterPro: IPR010097 This entry represents the NAD-dependent malate dehydrogenase found in eukaryotes and certain gamma proteobacteria. The enzyme is involved in the citric acid cycle as well as the glyoxalate cycle. Several isoforms exist in eukaryotes. In Saccharomyces cereviseae, for example, there are cytoplasmic, mitochondrial and peroxisomal forms. Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities.; GO: 0030060 L-malate dehydrogenase activity, 0006108 malate metabolic process.
Probab=94.43 E-value=0.12 Score=29.23 Aligned_cols=27 Identities=33% Similarity=0.669 Sum_probs=21.1
Q ss_pred EEEEECCCCHHHHHHHHHHHHCCCCEEE
Q ss_conf 7999816677899999999744998078
Q gi|254780307|r 4 KVAVVGATGNVGREMLNIICERGFPISE 31 (335)
Q Consensus 4 kvaIiGatG~vG~el~~lL~~~~~p~~~ 31 (335)
||||+||+|=+||-| .||.+++.|.+.
T Consensus 1 KVAVLGA~GGIGQpL-SLLLK~~Lp~~s 27 (379)
T TIGR01772 1 KVAVLGAAGGIGQPL-SLLLKLQLPQVS 27 (379)
T ss_pred CEEEEECCCCHHHHH-HHHHHHHCCCEE
T ss_conf 968985586421468-999985176457
No 163
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=94.29 E-value=0.047 Score=31.73 Aligned_cols=97 Identities=13% Similarity=0.267 Sum_probs=59.3
Q ss_pred CCE-EEEEECCCCHHHHHHHHHHHHCCCCEEEEEEEECCCCC----CEEEEC----------CC----C--E--E-EEEE
Q ss_conf 961-79998166778999999997449980789999747658----756002----------78----1--5--8-9987
Q gi|254780307|r 1 MTF-KVAVVGATGNVGREMLNIICERGFPISEVVALASERSA----GTKVPF----------GK----E--T--I-DVQD 56 (335)
Q Consensus 1 M~~-kvaIiGatG~vG~el~~lL~~~~~p~~~l~~~~s~~~~----G~~i~~----------~~----~--~--~-~~~~ 56 (335)
|.+ ||+|+|| |..|..+-.++..++|++. .+..+... -+.+.. .+ . + + .+.-
T Consensus 1 M~Ik~VaViGa-G~MG~gIA~~~a~~G~~V~---l~D~~~~~l~~a~~~i~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~ 76 (291)
T PRK06035 1 MDIKVIGVVGS-GVMGQGIAQVFARTGYDVT---IVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRT 76 (291)
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHHCCCCEE---EEECCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCC
T ss_conf 99588999887-6889999999995899889---9989989999999999971899999986689999999999836643
Q ss_pred C-CHHHHCCCCEEEECCCHHHHHH--HHH---HHCCCCEEEEECCCCHHCC
Q ss_conf 7-9436318847860687589999--997---5045651799614510011
Q gi|254780307|r 57 V-KSYDFSDTDICLMSAGHAVSSQ--MSP---KIAANGCIVIDNSSAWRYD 101 (335)
Q Consensus 57 ~-~~~~~~~~Divf~a~p~~~s~~--~~~---~~~~~g~~VIDlS~~~R~~ 101 (335)
. +-+.++++|+|+-|.|-+...+ +.. .....++++-+++|.+-..
T Consensus 77 ~~~~~~~~~aDlViEav~E~l~iK~~lf~~l~~~~~~~~IlaSNTSsl~is 127 (291)
T PRK06035 77 STSYESLSDADFIVEAVPEKLDLKRKVFAELERNVSPETIIASNTSGIMIA 127 (291)
T ss_pred CCCHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCCHH
T ss_conf 588889765999998883889999999999996589983798608877869
No 164
>COG1090 Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]
Probab=94.20 E-value=0.048 Score=31.67 Aligned_cols=68 Identities=18% Similarity=0.235 Sum_probs=36.4
Q ss_pred EEEECCCCHHHHHHHHHHHHCCCCEEEEEEEE-CCCCCCEEEECCCCEEEEEECCHHHHCCCCEEEECCCHHHH
Q ss_conf 99981667789999999974499807899997-47658756002781589987794363188478606875899
Q gi|254780307|r 5 VAVVGATGNVGREMLNIICERGFPISEVVALA-SERSAGTKVPFGKETIDVQDVKSYDFSDTDICLMSAGHAVS 77 (335)
Q Consensus 5 vaIiGatG~vG~el~~lL~~~~~p~~~l~~~~-s~~~~G~~i~~~~~~~~~~~~~~~~~~~~Divf~a~p~~~s 77 (335)
|+|-|+||++|+.|...|.+.+| ++..++ +...+......... ..+.+++..-.++|+|+--++....
T Consensus 1 IliTGgTGlIG~~L~~~L~~~gh---~v~iltR~~~~~~~~~~~~v~--~~~~~~~~~~~~~DavINLAG~~I~ 69 (297)
T COG1090 1 ILITGGTGLIGRALTARLRKGGH---QVTILTRRPPKASQNLHPNVT--LWEGLADALTLGIDAVINLAGEPIA 69 (297)
T ss_pred CEEECCCCCHHHHHHHHHHHCCC---EEEEEECCCCCHHHHCCCCCC--CCCHHHHCCCCCCCEEEECCCCCCC
T ss_conf 95735665016899999984898---699997478502332476533--4301244036787789988898154
No 165
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=94.13 E-value=0.29 Score=26.95 Aligned_cols=68 Identities=24% Similarity=0.417 Sum_probs=42.6
Q ss_pred EEEEEECCCCHHHHHHHHHHHHCCCCEEEEEEEECCC--CCCEEEEC------CCCEEEEE-ECCHHHHCCCCEEEECCC
Q ss_conf 1799981667789999999974499807899997476--58756002------78158998-779436318847860687
Q gi|254780307|r 3 FKVAVVGATGNVGREMLNIICERGFPISEVVALASER--SAGTKVPF------GKETIDVQ-DVKSYDFSDTDICLMSAG 73 (335)
Q Consensus 3 ~kvaIiGatG~vG~el~~lL~~~~~p~~~l~~~~s~~--~~G~~i~~------~~~~~~~~-~~~~~~~~~~Divf~a~p 73 (335)
-||+|+|+ |.||..+.-+|... +..|+.++.-.+ ..|+.... ......+. .-+-++.+++|+|..+++
T Consensus 8 ~KV~IIGa-G~VG~~~A~~l~~~--~l~eivLiDi~~~~a~g~a~Dl~h~~~~~~~~~~v~~~~dy~~~~~aDiVVitAG 84 (322)
T PTZ00082 8 KKISLIGS-GNIGGVMAYLIQLK--NLADVVLFDIVPNIPAGKALDIMHANVMAGSNCKVIGTNSYDDIAGSDVVIVTAG 84 (322)
T ss_pred CCEEEECC-CHHHHHHHHHHHCC--CCCEEEEEECCCCCCHHHHHHHHCCCCCCCCCCEEEECCCHHHHCCCCEEEECCC
T ss_conf 82999896-98999999999638--9977999978898008899987663644688857983799999779999998988
No 166
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.03 E-value=0.17 Score=28.35 Aligned_cols=87 Identities=15% Similarity=0.119 Sum_probs=54.8
Q ss_pred EEEEECCCCHHHHHHHHHHHHCCCCEEEEEEEECCCCCCEEEECCC-C-EEEEEECCHHHHCCCCEEEECCCHHHHHHHH
Q ss_conf 7999816677899999999744998078999974765875600278-1-5899877943631884786068758999999
Q gi|254780307|r 4 KVAVVGATGNVGREMLNIICERGFPISEVVALASERSAGTKVPFGK-E-TIDVQDVKSYDFSDTDICLMSAGHAVSSQMS 81 (335)
Q Consensus 4 kvaIiGatG~vG~el~~lL~~~~~p~~~l~~~~s~~~~G~~i~~~~-~-~~~~~~~~~~~~~~~Divf~a~p~~~s~~~~ 81 (335)
||+|+|. |..|.-..+.|.+++. .. +..+......-+...... . .....+...+.+.++|+++.+-+=....+++
T Consensus 10 kv~V~Gl-G~sG~aaa~~L~~~g~-~~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~vv~SPGi~~~~p~~ 86 (468)
T PRK04690 10 RVALWGW-GREGRAAYRALRAQLP-AQ-PLTVFCNAEEVREVGALADAALLVETEASAQRLAAFEVVVKSPGISPYRPEA 86 (468)
T ss_pred EEEEEEE-CHHHHHHHHHHHHCCC-EE-EEEECCCCCCCHHHHHHCCCCCEEECCCCHHHHHCCCEEEECCCCCCCCHHH
T ss_conf 7999834-7879999999996699-04-9997288324646676204575674677855761488999899579868999
Q ss_pred HHHCCCCEEEEE
Q ss_conf 750456517996
Q gi|254780307|r 82 PKIAANGCIVID 93 (335)
Q Consensus 82 ~~~~~~g~~VID 93 (335)
.++.++|+.||.
T Consensus 87 ~~a~~~~i~i~~ 98 (468)
T PRK04690 87 LAAAAQGTPFIG 98 (468)
T ss_pred HHHHHCCCCEEE
T ss_conf 999987994886
No 167
>TIGR02197 heptose_epim ADP-L-glycero-D-manno-heptose-6-epimerase; InterPro: IPR011912 Lipopolysaccharides (LPS) are glycolipids that consitutes the outer monolayer of the outer membranes of most Gram-negative bacteria . They consist of lipid A (endotoxin) which anchors LPS to the outer membrane, a non-repeating core oligosachharide, and an immunogenic O-antigen repeat polymer, which is an oligosaccharide of 1-40 units that variesbetween different strains of bacteria. Although the O-antigen and most of the core domain are not necessary for growth in the lab, they appear to help bacteria resist environmental stresses including the complement system and antibiotics. This family consists of examples of ADP-L-glycero-D-mannoheptose-6-epimerase, an enzyme involved in biosynthesis of the inner core of LPS in Gram-negative bacteria . This enzyme is homologous to UDP-glucose 4-epimerase (IPR005886 from INTERPRO) and belongs to the NAD dependent epimerase/dehydratase family. It participates in the biosynthetic pathway leading to incorporation of heptose, a conserved sugar, into the core region of LPS, performing the reaction shown below: ADP-D-glycero-D-manno-heptose = ADP-L-glycero-D-manno-heptose It is a homopentameric enzyme with each monomer composed of two domains: an N-terminal modified Rossman fold domain for NADP binding, and a C-terminal substrate binding domain.; GO: 0008712 ADP-glyceromanno-heptose 6-epimerase activity, 0050661 NADP binding, 0005975 carbohydrate metabolic process.
Probab=94.02 E-value=0.06 Score=31.06 Aligned_cols=104 Identities=17% Similarity=0.246 Sum_probs=63.8
Q ss_pred EEEECCCCHHHHHHHHHHHHCCCCEEEEEEEECCCC-----CC---------EEEECCCCEEE--------EEECCH--H
Q ss_conf 999816677899999999744998078999974765-----87---------56002781589--------987794--3
Q gi|254780307|r 5 VAVVGATGNVGREMLNIICERGFPISEVVALASERS-----AG---------TKVPFGKETID--------VQDVKS--Y 60 (335)
Q Consensus 5 vaIiGatG~vG~el~~lL~~~~~p~~~l~~~~s~~~-----~G---------~~i~~~~~~~~--------~~~~~~--~ 60 (335)
|-|-|+.|++|+.|+..|++++ |.-+|..+..=++ .| |-+.+.+..+. +..+.. .
T Consensus 1 IiVTGGAGFIGSNlv~~LN~~g-P~~dI~vvD~L~~~~~F~ng~~~slg~~kk~~Nl~~~~I~d~i~k~~~~~~l~~~~~ 79 (353)
T TIGR02197 1 IIVTGGAGFIGSNLVKALNERG-PETDILVVDNLRDDATFENGNPQSLGHFKKFLNLADLEIADYIDKDDLLDRLEKGSE 79 (353)
T ss_pred CEECCCCCHHHHHHHHHHHHCC-CCCEEEEEEECCCCCCCCCCCCCCHHHCCCCCCCCCCHHHCCCCCHHHHHHHHHCCC
T ss_conf 9550676368999999996438-954288874078755246777432234244325554112133588546999983020
Q ss_pred HHCCCCEEEECC----------------CHHHHHHHHHHHCCCCEEEEECCCCHHCCCCCCCC-CCCHHHHH
Q ss_conf 631884786068----------------75899999975045651799614510011211123-64101111
Q gi|254780307|r 61 DFSDTDICLMSA----------------GHAVSSQMSPKIAANGCIVIDNSSAWRYDSDVPLI-VPEVNPQT 115 (335)
Q Consensus 61 ~~~~~Divf~a~----------------p~~~s~~~~~~~~~~g~~VIDlS~~~R~~~d~p~~-lPein~~~ 115 (335)
++.++|+||==. -...|+.+++-.++.++++|=+|||= +|| -++-+++.
T Consensus 80 ~~~~~~avfH~GAcS~TTe~D~~~~m~nN~~ys~~Ll~~c~~~~~~~IYASSAa------tYG~~~~~f~~~ 145 (353)
T TIGR02197 80 ALGKIEAVFHQGACSDTTETDGEYMMENNYQYSKRLLDWCAEKGVPFIYASSAA------TYGDGEAGFRED 145 (353)
T ss_pred CCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCHH------HCCCCCCCCCCC
T ss_conf 138833799733125358862799998899999999999996489868850312------107687777766
No 168
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.01 E-value=0.08 Score=30.33 Aligned_cols=86 Identities=19% Similarity=0.246 Sum_probs=50.3
Q ss_pred CCE-EEEEECCCCHHHHHHHHHHHHCCCCEEEEEEEECCCCCCEEEECCCCEEEEEECCHHHHCCCCEEEECCCHHHHHH
Q ss_conf 961-7999816677899999999744998078999974765875600278158998779436318847860687589999
Q gi|254780307|r 1 MTF-KVAVVGATGNVGREMLNIICERGFPISEVVALASERSAGTKVPFGKETIDVQDVKSYDFSDTDICLMSAGHAVSSQ 79 (335)
Q Consensus 1 M~~-kvaIiGatG~vG~el~~lL~~~~~p~~~l~~~~s~~~~G~~i~~~~~~~~~~~~~~~~~~~~Divf~a~p~~~s~~ 79 (335)
|.| ||.|+|. |..|+...+.|.+++. ++.........-+..+...+. .+ +..+..+.++|+++.+-+=.....
T Consensus 1 ~~~KkvlV~Gl-G~SG~s~a~~L~~~g~---~v~~~D~~~~~~~~~~~~~~~-~~-~~~~~~~~~~d~vv~SPGi~~~~p 74 (418)
T PRK00683 1 MGLQRVVVLGL-GVTGKSVARFLAQKGV---YVIGVDNSLEALQSCPYIHER-YL-EGAEEFPEQVDLVVRSPGIKPYHP 74 (418)
T ss_pred CCCCEEEEEEE-CHHHHHHHHHHHHCCC---EEEEECCCHHHHHHCCHHHHH-CC-CCHHHCCCCCCEEEECCCCCCCCH
T ss_conf 99866999808-8879999999997829---899982981454546145554-05-623324234989998998599889
Q ss_pred HHHHHCCCCEEEE
Q ss_conf 9975045651799
Q gi|254780307|r 80 MSPKIAANGCIVI 92 (335)
Q Consensus 80 ~~~~~~~~g~~VI 92 (335)
+...+.+.|+.|+
T Consensus 75 ~~~~a~~~~i~i~ 87 (418)
T PRK00683 75 WVEAAVALKIPVV 87 (418)
T ss_pred HHHHHHHCCCCCC
T ss_conf 9999998699754
No 169
>PRK12367 short chain dehydrogenase; Provisional
Probab=93.84 E-value=0.45 Score=25.80 Aligned_cols=68 Identities=13% Similarity=0.357 Sum_probs=38.9
Q ss_pred EEEEEECCCCHHHHHHHHHHHHCCCCEEEEEEEECCCCCCEEEECC-CCEEEEEECCH-----HHHCCCCEEEECCC
Q ss_conf 1799981667789999999974499807899997476587560027-81589987794-----36318847860687
Q gi|254780307|r 3 FKVAVVGATGNVGREMLNIICERGFPISEVVALASERSAGTKVPFG-KETIDVQDVKS-----YDFSDTDICLMSAG 73 (335)
Q Consensus 3 ~kvaIiGatG~vG~el~~lL~~~~~p~~~l~~~~s~~~~G~~i~~~-~~~~~~~~~~~-----~~~~~~Divf~a~p 73 (335)
-+|||-||+|..|++|.+.|..++. .+..+++++.....+... -.+...=+..+ ..++++|+.++--|
T Consensus 18 KtIgITGAsGaLG~AL~k~f~~~Ga---kVIalTh~~~~~~~~~~~~p~~wi~W~cG~E~~L~~~LkkiDILILNHG 91 (250)
T PRK12367 18 KRIGITGASGALGKALTKLFRAKGA---KVIGLTHSKINNSEISDESPNEWVSWECGKESSLDKTLAKIDVLILNHG 91 (250)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCC---EEEEEECCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHCCEEEECCC
T ss_conf 8799967873899999999998899---8999836888875455678952898434998999999875889998387
No 170
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=93.80 E-value=0.17 Score=28.37 Aligned_cols=68 Identities=31% Similarity=0.517 Sum_probs=43.1
Q ss_pred EEEEECCCCHHHHHHHHHHHHCCCCEEEEEEEECCC--CCCEEEECC-------CCEEEEEECCHHHHCCCCEEEECCC
Q ss_conf 799981667789999999974499807899997476--587560027-------8158998779436318847860687
Q gi|254780307|r 4 KVAVVGATGNVGREMLNIICERGFPISEVVALASER--SAGTKVPFG-------KETIDVQDVKSYDFSDTDICLMSAG 73 (335)
Q Consensus 4 kvaIiGatG~vG~el~~lL~~~~~p~~~l~~~~s~~--~~G~~i~~~-------~~~~~~~~~~~~~~~~~Divf~a~p 73 (335)
||+|+|+ |.||..+.-.|..++ -..||.++.-.+ ..|+..... .....+..-+-.+++++|+|+.+++
T Consensus 1 KI~IIGa-G~VG~~~A~~l~~~~-~~~elvL~Di~~~~a~g~a~Dl~h~~~~~~~~~~~~~~~~y~~~~~aDiVVitaG 77 (307)
T cd05290 1 KLVVIGA-GHVGSAVLNYALALG-LFSEIVLIDVNEGVAEGEALDFHHATALTYSTNTKIRAGDYDDCADADIIVITAG 77 (307)
T ss_pred CEEEECC-CHHHHHHHHHHHHCC-CCCEEEEEECCCCCCHHHHHHHHHHCCCCCCCCEEECCCCHHHHCCCCEEEECCC
T ss_conf 9899996-989999999998569-9887999928898237999987612035899865866799899469999998677
No 171
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=93.78 E-value=0.14 Score=28.87 Aligned_cols=96 Identities=18% Similarity=0.299 Sum_probs=57.8
Q ss_pred CCE-EEEEECCCCHHHHHHHHHHHHCCCCEEEEEEEECCCCC-CEE---E----E---------CCC-----CEEEEEEC
Q ss_conf 961-79998166778999999997449980789999747658-756---0----0---------278-----15899877
Q gi|254780307|r 1 MTF-KVAVVGATGNVGREMLNIICERGFPISEVVALASERSA-GTK---V----P---------FGK-----ETIDVQDV 57 (335)
Q Consensus 1 M~~-kvaIiGatG~vG~el~~lL~~~~~p~~~l~~~~s~~~~-G~~---i----~---------~~~-----~~~~~~~~ 57 (335)
|.+ ||+|+|| |..|+.+..++..+++++ .++..+... .+. + . ... ..+... .
T Consensus 2 ~~ik~VaViGA-G~MG~giA~~~a~~G~~V---~l~D~~~e~~~~~~~~i~~~l~~~~~~~~l~~~~~~~~l~~i~~~-~ 76 (292)
T PRK07530 2 MAIKKVGVIGA-GQMGNGIAHVCALAGYDV---LLNDVSADRLESGMATINGNLARQVAKGKISEEARAAALARITTA-T 76 (292)
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHHCCCCE---EEEECCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCC-C
T ss_conf 99888999896-699999999999679968---999798899999999999999999970688889999998407776-8
Q ss_pred CHHHHCCCCEEEECCCHHHHHH--HHH---HHCCCCEEEEECCCCHHCC
Q ss_conf 9436318847860687589999--997---5045651799614510011
Q gi|254780307|r 58 KSYDFSDTDICLMSAGHAVSSQ--MSP---KIAANGCIVIDNSSAWRYD 101 (335)
Q Consensus 58 ~~~~~~~~Divf~a~p~~~s~~--~~~---~~~~~g~~VIDlS~~~R~~ 101 (335)
+-.+++++|+|+-|.|-....+ +.. .....++++-+++|.+...
T Consensus 77 ~~~~~~~aDlViEav~E~l~iK~~lf~~l~~~~~~~~IlaSNTSsl~is 125 (292)
T PRK07530 77 TLDDLADCDLVIEAATEDETVKRKIFAQLCPVLKPEAILASNTSSISIT 125 (292)
T ss_pred CHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCCCH
T ss_conf 9889664999998884745878989999986269884898758887505
No 172
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=93.75 E-value=0.35 Score=26.43 Aligned_cols=93 Identities=18% Similarity=0.206 Sum_probs=56.0
Q ss_pred EEEEECCCCHHHHHHHHHHHHCCCCEEEEEEEECCCCCCE----EEE-------CCC-------CEEEEEECCHHHHCCC
Q ss_conf 7999816677899999999744998078999974765875----600-------278-------1589987794363188
Q gi|254780307|r 4 KVAVVGATGNVGREMLNIICERGFPISEVVALASERSAGT----KVP-------FGK-------ETIDVQDVKSYDFSDT 65 (335)
Q Consensus 4 kvaIiGatG~vG~el~~lL~~~~~p~~~l~~~~s~~~~G~----~i~-------~~~-------~~~~~~~~~~~~~~~~ 65 (335)
||||+|+ |..|.-+..++..+++ ++..+..+..+-+ .+. ..+ ..+.+..--++.++++
T Consensus 9 ~VaVIGa-G~MG~giAa~~a~~G~---~V~l~D~~~~a~~~~~~~i~~~~~~l~~~~~~~~~~~~~l~~~~~l~~av~~a 84 (321)
T PRK07066 9 TFAAIGS-GVIGSGWVARALAHGL---DVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFVATIEACVADA 84 (321)
T ss_pred EEEEECC-CHHHHHHHHHHHHCCC---EEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHCCC
T ss_conf 7999888-7888999999994798---59999698889999999999999999866899631696501468889986359
Q ss_pred CEEEECCCHHHHHH--H---HHHHCCCCEEEEECCCCHHC
Q ss_conf 47860687589999--9---97504565179961451001
Q gi|254780307|r 66 DICLMSAGHAVSSQ--M---SPKIAANGCIVIDNSSAWRY 100 (335)
Q Consensus 66 Divf~a~p~~~s~~--~---~~~~~~~g~~VIDlS~~~R~ 100 (335)
|+|+-|.|-....+ + ...+...++++-+++|.+-.
T Consensus 85 D~ViEavpE~l~lK~~lf~~ld~~~~~~aIiASnTS~l~i 124 (321)
T PRK07066 85 DFIQESAPEREALKLELHERISRAAKPDAIIASSTSGLLP 124 (321)
T ss_pred CEEEECCEECHHHHHHHHHHHHHHCCCCCEEEECCCCCCH
T ss_conf 9899877665999999999999767988678525765789
No 173
>pfam01073 3Beta_HSD 3-beta hydroxysteroid dehydrogenase/isomerase family. The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyses the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones.
Probab=93.74 E-value=0.14 Score=28.76 Aligned_cols=29 Identities=28% Similarity=0.499 Sum_probs=22.4
Q ss_pred EECCCCHHHHHHHHHHHHCCCCEEEEEEEE
Q ss_conf 981667789999999974499807899997
Q gi|254780307|r 7 VVGATGNVGREMLNIICERGFPISEVVALA 36 (335)
Q Consensus 7 IiGatG~vG~el~~lL~~~~~p~~~l~~~~ 36 (335)
|.|++||+|+.|++.|.+++|. .++..+.
T Consensus 2 VTGg~GFIGs~lv~~Ll~~g~~-~~V~~~d 30 (280)
T pfam01073 2 VTGGGGFLGRHIVRLLLREGEL-QEVRVFD 30 (280)
T ss_pred CCCCCCHHHHHHHHHHHHCCCC-CEEEEEE
T ss_conf 0586759999999999977997-5799987
No 174
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=93.70 E-value=0.1 Score=29.68 Aligned_cols=22 Identities=41% Similarity=0.749 Sum_probs=12.1
Q ss_pred EEEEECCCCHHHHHHHHHHHHCC
Q ss_conf 79998166778999999997449
Q gi|254780307|r 4 KVAVVGATGNVGREMLNIICERG 26 (335)
Q Consensus 4 kvaIiGatG~vG~el~~lL~~~~ 26 (335)
||.|+|+ |-.|+-..+-|.+++
T Consensus 184 ~vlviGa-Gem~~l~~k~L~~~g 205 (429)
T PRK00045 184 KVLVIGA-GEMGELVAKHLAEKG 205 (429)
T ss_pred EEEEECC-CHHHHHHHHHHHHCC
T ss_conf 5999767-489999999998559
No 175
>KOG1203 consensus
Probab=93.66 E-value=0.065 Score=30.85 Aligned_cols=30 Identities=47% Similarity=0.843 Sum_probs=25.0
Q ss_pred EEEEEECCCCHHHHHHHHHHHHCCCCEEEE
Q ss_conf 179998166778999999997449980789
Q gi|254780307|r 3 FKVAVVGATGNVGREMLNIICERGFPISEV 32 (335)
Q Consensus 3 ~kvaIiGatG~vG~el~~lL~~~~~p~~~l 32 (335)
..|.++||||.+|+.+.+.|.+++|+.--+
T Consensus 80 ~~VlVvGatG~vG~~iv~~llkrgf~vra~ 109 (411)
T KOG1203 80 TTVLVVGATGKVGRRIVKILLKRGFSVRAL 109 (411)
T ss_pred CEEEEECCCCCHHHHHHHHHHHCCCEEEEE
T ss_conf 749995588736399999999779702342
No 176
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=93.65 E-value=0.27 Score=27.08 Aligned_cols=89 Identities=16% Similarity=0.137 Sum_probs=55.0
Q ss_pred CEEEEEECCCCHHHHHHHHHHHHCCCCEEEEEEEECCCCCCE--EEEC-CCCEEEEEECCHHHHCCCCEEEECCCHHHHH
Q ss_conf 617999816677899999999744998078999974765875--6002-7815899877943631884786068758999
Q gi|254780307|r 2 TFKVAVVGATGNVGREMLNIICERGFPISEVVALASERSAGT--KVPF-GKETIDVQDVKSYDFSDTDICLMSAGHAVSS 78 (335)
Q Consensus 2 ~~kvaIiGatG~vG~el~~lL~~~~~p~~~l~~~~s~~~~G~--~i~~-~~~~~~~~~~~~~~~~~~Divf~a~p~~~s~ 78 (335)
++||-|||+ |-|+.+=++.|.+.+ ..+.+ + |+.-.-+ .+.. +.=.+.-.+.++.++.+.++||.|+.+..--
T Consensus 24 klkvLVVGG-G~VA~RKi~~Ll~ag-A~VtV--V-SP~~~~el~~L~~~~~I~~i~r~y~~~dL~~~~LVIaATdd~~lN 98 (222)
T PRK05562 24 KIKVLVIGG-GKAAFIKGKTFLKKG-CYVEI--L-SKEFSKEFLDLKKYGNLKLIKGNYDKEFIKDKHLIIIATDDEELN 98 (222)
T ss_pred CCEEEEECC-CHHHHHHHHHHHHCC-CEEEE--E-CCCCCHHHHHHHHCCCEEEEECCCCHHHCCCCCEEEEECCCHHHH
T ss_conf 766999998-799999999998789-98999--8-786688999999759869996867977808873999947988999
Q ss_pred HHHH-HHCCCCEEEEECC
Q ss_conf 9997-5045651799614
Q gi|254780307|r 79 QMSP-KIAANGCIVIDNS 95 (335)
Q Consensus 79 ~~~~-~~~~~g~~VIDlS 95 (335)
+.+. .+.+.|..|.+.+
T Consensus 99 ~~I~~~a~~~~ilvNvvd 116 (222)
T PRK05562 99 NKIRKHCDRLYKLYIDCS 116 (222)
T ss_pred HHHHHHHHHHCCEEEECC
T ss_conf 999999998099889857
No 177
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.50 E-value=0.27 Score=27.13 Aligned_cols=87 Identities=20% Similarity=0.213 Sum_probs=52.3
Q ss_pred EEEEEECCCCHHHHHHHHHHHHCCCCEEEEEEEECCCC--CCE---EEECCCCEEEEEECCHHHHCCCCEEEECCCHHHH
Q ss_conf 17999816677899999999744998078999974765--875---6002781589987794363188478606875899
Q gi|254780307|r 3 FKVAVVGATGNVGREMLNIICERGFPISEVVALASERS--AGT---KVPFGKETIDVQDVKSYDFSDTDICLMSAGHAVS 77 (335)
Q Consensus 3 ~kvaIiGatG~vG~el~~lL~~~~~p~~~l~~~~s~~~--~G~---~i~~~~~~~~~~~~~~~~~~~~Divf~a~p~~~s 77 (335)
+||+|+|. |..|....++|.+++. ++..+..... ... .+...+-++.+-......+.++|+++.+-+=...
T Consensus 15 k~v~V~Gl-G~sG~s~a~~L~~~G~---~v~~~D~~~~~~~~~~~~~l~~~g~~~~~g~~~~~~~~~~d~vV~SPGI~~~ 90 (481)
T PRK01438 15 LRVVVAGL-GVSGFPAADALHELGA---SVTVVADGDDDRSRERAALLEVLGATVRLGDGETTLPEGTELVVTSPGWRPT 90 (481)
T ss_pred CEEEEEEE-CHHHHHHHHHHHHCCC---EEEEEECCCCCCCHHHHHHHHHCCCEEEECCCHHHHHCCCCEEEECCCCCCC
T ss_conf 98999957-5889999999996799---8999979987448689998885498899688756662489999989978998
Q ss_pred HHHHHHHCCCCEEEEE
Q ss_conf 9999750456517996
Q gi|254780307|r 78 SQMSPKIAANGCIVID 93 (335)
Q Consensus 78 ~~~~~~~~~~g~~VID 93 (335)
.+....+.++|+.|+.
T Consensus 91 ~p~~~~a~~~gi~i~~ 106 (481)
T PRK01438 91 HPLLAAAAEAGIPVWG 106 (481)
T ss_pred CHHHHHHHHCCCCEEC
T ss_conf 9999999986993861
No 178
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=93.48 E-value=0.18 Score=28.12 Aligned_cols=66 Identities=23% Similarity=0.466 Sum_probs=42.3
Q ss_pred EEEECCCCHHHHHHHHHHHHCCCCEEEEEEEECCC--CCCEEEE------CCCCEEEEEEC-CHHHHCCCCEEEECCC
Q ss_conf 99981667789999999974499807899997476--5875600------27815899877-9436318847860687
Q gi|254780307|r 5 VAVVGATGNVGREMLNIICERGFPISEVVALASER--SAGTKVP------FGKETIDVQDV-KSYDFSDTDICLMSAG 73 (335)
Q Consensus 5 vaIiGatG~vG~el~~lL~~~~~p~~~l~~~~s~~--~~G~~i~------~~~~~~~~~~~-~~~~~~~~Divf~a~p 73 (335)
|+|+|+ |.||..+.-.|..++ ..||.++.-.. ..|.... +.+....+..- +..+++++|+++.+++
T Consensus 1 V~IIGa-G~VG~~~a~~l~~~~--~~el~L~D~~~~~a~g~a~DL~~~~~~~~~~~~v~~~~d~~~~~daDvvVitaG 75 (300)
T cd01339 1 ISIIGA-GNVGATLAQLLALKE--LGDVVLLDIVEGLPQGKALDISQAAPILGSDTKVTGTNDYEDIAGSDVVVITAG 75 (300)
T ss_pred CEEECC-CHHHHHHHHHHHHCC--CCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCEEEECCCHHHHCCCCEEEEECC
T ss_conf 989896-888999999998579--967999809998005798877613201589858994788799479989999067
No 179
>PRK10084 dTDP-glucose 4,6 dehydratase; Provisional
Probab=93.46 E-value=0.16 Score=28.47 Aligned_cols=25 Identities=24% Similarity=0.437 Sum_probs=21.1
Q ss_pred EEEEEECCCCHHHHHHHHHHHHCCC
Q ss_conf 1799981667789999999974499
Q gi|254780307|r 3 FKVAVVGATGNVGREMLNIICERGF 27 (335)
Q Consensus 3 ~kvaIiGatG~vG~el~~lL~~~~~ 27 (335)
|||-|.|++|++|..|.+.|.++.+
T Consensus 1 MkILVTGg~GFIGs~l~~~Ll~~~~ 25 (352)
T PRK10084 1 MKILVTGGAGFIGSAVVRHIINNTQ 25 (352)
T ss_pred CEEEEECCHHHHHHHHHHHHHHCCC
T ss_conf 9799975100899999999997799
No 180
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=93.43 E-value=0.26 Score=27.24 Aligned_cols=68 Identities=25% Similarity=0.439 Sum_probs=42.1
Q ss_pred EEEEEECCCCHHHHHHHHHHHHCCCCEEEEEEEECCC--CCCEEEE------CCCCEEEEEECCHHHHCCCCEEEECCC
Q ss_conf 1799981667789999999974499807899997476--5875600------278158998779436318847860687
Q gi|254780307|r 3 FKVAVVGATGNVGREMLNIICERGFPISEVVALASER--SAGTKVP------FGKETIDVQDVKSYDFSDTDICLMSAG 73 (335)
Q Consensus 3 ~kvaIiGatG~vG~el~~lL~~~~~p~~~l~~~~s~~--~~G~~i~------~~~~~~~~~~~~~~~~~~~Divf~a~p 73 (335)
-||+|+|+ |.||..+.-.|..++ -..||.++.-.. ..|+... +.. ...+..-+-.+.+++|+|+.+++
T Consensus 7 ~KI~IIGa-G~VG~~~a~~l~~~~-l~~el~LiD~~~~~a~g~a~Dl~h~~~~~~-~~~i~~gdy~~~~daDvVVitAG 82 (315)
T PRK00066 7 NKVVLVGD-GAVGSSYAYALVNQG-IADELVIIDINKEKAEGDAMDLSHAVPFTS-PTKIYAGDYSDCKDADLVVITAG 82 (315)
T ss_pred CEEEEECC-CHHHHHHHHHHHHCC-CCCEEEEEECCCCCCHHHHHHHHHHCCCCC-CCEEEECCHHHHCCCCEEEECCC
T ss_conf 84999997-988999999998669-988899980898710789998885412368-84797399999679999998999
No 181
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=93.35 E-value=0.37 Score=26.30 Aligned_cols=104 Identities=14% Similarity=0.302 Sum_probs=61.3
Q ss_pred EEEEEECCCCHHHHHHHHHHHHCCCCEEEEEEEE---------------CCCCCCEE--------EECCCCEEEEE----
Q ss_conf 1799981667789999999974499807899997---------------47658756--------00278158998----
Q gi|254780307|r 3 FKVAVVGATGNVGREMLNIICERGFPISEVVALA---------------SERSAGTK--------VPFGKETIDVQ---- 55 (335)
Q Consensus 3 ~kvaIiGatG~vG~el~~lL~~~~~p~~~l~~~~---------------s~~~~G~~--------i~~~~~~~~~~---- 55 (335)
-||.|+|+ |-+|..+...|...+.- +|..+. +++..|+. +..-..+..+.
T Consensus 22 s~VlivG~-GGlGs~~~~~La~~Gvg--~i~lvD~D~ve~sNLnRQ~l~~~~diG~~K~~~a~~~l~~iNp~i~i~~~~~ 98 (228)
T cd00757 22 ARVLVVGA-GGLGSPAAEYLAAAGVG--KLGLVDDDVVELSNLQRQILHTEADVGQPKAEAAAERLRAINPDVEIEAYNE 98 (228)
T ss_pred CCEEEECC-CHHHHHHHHHHHHCCCC--EEEEEECCCCCCCCCHHHHEECHHHCCCCHHHHHHHHHHHHCCCCCCEEHHH
T ss_conf 97899887-78899999999983997--5899978745567642210237866878959999999985488753031321
Q ss_pred ECCHHH----HCCCCEEEECCCHHHHHHHHHHHC-CCCEEEEECCCCHHCCCCCCCCCCC
Q ss_conf 779436----318847860687589999997504-5651799614510011211123641
Q gi|254780307|r 56 DVKSYD----FSDTDICLMSAGHAVSSQMSPKIA-ANGCIVIDNSSAWRYDSDVPLIVPE 110 (335)
Q Consensus 56 ~~~~~~----~~~~Divf~a~p~~~s~~~~~~~~-~~g~~VIDlS~~~R~~~d~p~~lPe 110 (335)
.+++++ ++++|+|+-|+++-.++.+..++. +.++.+|..+. .++.-.+....|.
T Consensus 99 ~i~~~~~~~~~~~~DlVid~~Dn~~~R~~ln~~~~~~~iP~i~g~~-~g~~Gqv~~~~p~ 157 (228)
T cd00757 99 RLDAENAEELIAGYDLVLDCTDNFATRYLINDACVKLGKPLVSGAV-LGFEGQVTVFIPG 157 (228)
T ss_pred CCCHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHHHCCCCEEEEEE-CCCEEEEEEECCC
T ss_conf 0057569988737989998779988999999999983998899974-0028689886799
No 182
>PRK08219 short chain dehydrogenase; Provisional
Probab=93.29 E-value=0.13 Score=29.05 Aligned_cols=25 Identities=20% Similarity=0.465 Sum_probs=22.2
Q ss_pred CCEEEEEE-CCCCHHHHHHHHHHHHC
Q ss_conf 96179998-16677899999999744
Q gi|254780307|r 1 MTFKVAVV-GATGNVGREMLNIICER 25 (335)
Q Consensus 1 M~~kvaIi-GatG~vG~el~~lL~~~ 25 (335)
|+||+++| ||++=+|+++.+.|.+.
T Consensus 1 m~mKvalITGas~GIG~aia~~la~~ 26 (226)
T PRK08219 1 MGMPTALITGASRGIGAAIARALART 26 (226)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHHC
T ss_conf 97899999284649999999999969
No 183
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain; InterPro: IPR014089 This group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which they have been characterised , , . In most species this protein is bifunctional, existing as fused alpha-beta domains. In Pyrococcus and related species, however, the domains exist as separate polypeptides. This entry represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. One of these (along with its beta-domain partner) was characterised as ACS-II showing specificity for phenylacetyl-CoA . This entry excludes non-ACS-I paralogs. .
Probab=93.23 E-value=0.17 Score=28.26 Aligned_cols=90 Identities=16% Similarity=0.273 Sum_probs=55.2
Q ss_pred EEEEECCCCH---HHHHHHHHHHHCCCCEEEEEEEECCCCCCEEEECCC-CEEEEEECCHHHHCCCCEEEECCCHHHHHH
Q ss_conf 7999816677---899999999744998078999974765875600278-158998779436318847860687589999
Q gi|254780307|r 4 KVAVVGATGN---VGREMLNIICERGFPISEVVALASERSAGTKVPFGK-ETIDVQDVKSYDFSDTDICLMSAGHAVSSQ 79 (335)
Q Consensus 4 kvaIiGatG~---vG~el~~lL~~~~~p~~~l~~~~s~~~~G~~i~~~~-~~~~~~~~~~~~~~~~Divf~a~p~~~s~~ 79 (335)
+|||||||-. ||-..++=|-+-+ -..+++.+-.. .+ +...+ -. .+.++.+.|...+|++..+.|....-+
T Consensus 9 SvAVIGAS~~~gKVGy~i~~NL~~~G-y~G~~YPVNpk---~~-i~i~Gr~k-~Y~~~~~~dP~~VDLAVivvPa~~vp~ 82 (457)
T TIGR02717 9 SVAVIGASRDEGKVGYAIMKNLIEGG-YKGKIYPVNPK---AG-IEILGRVK-AYPSVLEIDPDEVDLAVIVVPAKLVPQ 82 (457)
T ss_pred CEEEECCCCCCCCCCHHHHEEEECCC-CEEEEEEECCC---CC-EEEEECCC-CCCCHHHCCCCCCCEEEEECCHHHHHH
T ss_conf 15897124889851002200000378-30368762278---87-14630114-578711148997347999728567999
Q ss_pred HHHHHCCCCEE-EEECCCCHH
Q ss_conf 99750456517-996145100
Q gi|254780307|r 80 MSPKIAANGCI-VIDNSSAWR 99 (335)
Q Consensus 80 ~~~~~~~~g~~-VIDlS~~~R 99 (335)
.++...++|++ +|=+|+=|+
T Consensus 83 v~eECG~KGVkg~vvI~AGF~ 103 (457)
T TIGR02717 83 VVEECGEKGVKGAVVITAGFK 103 (457)
T ss_pred HHHHHHHCCCEEEEEECCCCC
T ss_conf 999986179518999714864
No 184
>KOG1494 consensus
Probab=93.18 E-value=0.21 Score=27.81 Aligned_cols=40 Identities=28% Similarity=0.461 Sum_probs=26.7
Q ss_pred CEEEEEECCCCHHHHHHHHHHHHCCCCEEEEEEEECCCCCC
Q ss_conf 61799981667789999999974499807899997476587
Q gi|254780307|r 2 TFKVAVVGATGNVGREMLNIICERGFPISEVVALASERSAG 42 (335)
Q Consensus 2 ~~kvaIiGatG~vG~el~~lL~~~~~p~~~l~~~~s~~~~G 42 (335)
.+||||+||.|-+||-|--|| +++.-.-+|.+..-....|
T Consensus 28 ~~KVAvlGAaGGIGQPLSLLl-K~np~Vs~LaLYDi~~~~G 67 (345)
T KOG1494 28 GLKVAVLGAAGGIGQPLSLLL-KLNPLVSELALYDIANTPG 67 (345)
T ss_pred CCEEEEEECCCCCCCCHHHHH-HCCCCCCEEEEEECCCCCC
T ss_conf 624999734876675689997-4285523013332036986
No 185
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=93.15 E-value=0.29 Score=26.94 Aligned_cols=84 Identities=14% Similarity=0.201 Sum_probs=49.5
Q ss_pred EEEEEECCCCHHHHHHHHHHHHCCCCEEEEEEEECCCCCCEEEE---CCCCEEEEEECCHHHHCCCCEEEECCCHHHHHH
Q ss_conf 17999816677899999999744998078999974765875600---278158998779436318847860687589999
Q gi|254780307|r 3 FKVAVVGATGNVGREMLNIICERGFPISEVVALASERSAGTKVP---FGKETIDVQDVKSYDFSDTDICLMSAGHAVSSQ 79 (335)
Q Consensus 3 ~kvaIiGatG~vG~el~~lL~~~~~p~~~l~~~~s~~~~G~~i~---~~~~~~~~~~~~~~~~~~~Divf~a~p~~~s~~ 79 (335)
-+|-|+|+ |.|+..=++.|.+.+ ..+.+ ++ ++....... .+.-...-.+.++.++.++++||.|+......+
T Consensus 11 k~vLVVGG-G~vA~rK~~~Ll~~g-A~VtV--vs-p~~~~el~~l~~~~~i~~~~~~~~~~dl~~~~lViaAT~d~~~N~ 85 (202)
T PRK06718 11 KRVVIVGG-GKVAGRRAITLLKYG-AHITV--IS-PEITENLVKLVEEGKIRWKEKEFEPSDIVDAFLVIAATNDPRVNE 85 (202)
T ss_pred CEEEEECC-CHHHHHHHHHHHHCC-CEEEE--EC-CCCCHHHHHHHHCCCCEEEECCCCHHHHCCCCEEEECCCCHHHHH
T ss_conf 86999889-899999999998689-96999--86-999989999997699447616788667516704455279899999
Q ss_pred HHHHHCCCCEEE
Q ss_conf 997504565179
Q gi|254780307|r 80 MSPKIAANGCIV 91 (335)
Q Consensus 80 ~~~~~~~~g~~V 91 (335)
.+.+....+..|
T Consensus 86 ~i~~~~~~~~lv 97 (202)
T PRK06718 86 AVAEALPENALF 97 (202)
T ss_pred HHHHHHHHCCCE
T ss_conf 999986544875
No 186
>PRK09117 consensus
Probab=93.11 E-value=0.47 Score=25.67 Aligned_cols=93 Identities=15% Similarity=0.263 Sum_probs=57.5
Q ss_pred EEEEECCCCHHHHHHHHHHHHCCCCEEEEEEEECC-CCCCE---EE-------------ECCC-----CEEEEEECCHHH
Q ss_conf 79998166778999999997449980789999747-65875---60-------------0278-----158998779436
Q gi|254780307|r 4 KVAVVGATGNVGREMLNIICERGFPISEVVALASE-RSAGT---KV-------------PFGK-----ETIDVQDVKSYD 61 (335)
Q Consensus 4 kvaIiGatG~vG~el~~lL~~~~~p~~~l~~~~s~-~~~G~---~i-------------~~~~-----~~~~~~~~~~~~ 61 (335)
||+|+|| |..|..+..++..+++++. .+..+ +...+ .+ .... ..+.. ..+-..
T Consensus 4 ~VaViGa-G~mG~~iA~~~a~~G~~V~---l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~-~~d~~a 78 (282)
T PRK09117 4 TVGIIGA-GTMGNGIAQACAVAGLDVV---MVDISDAAVQRGLATVAGSLDRLIKKEKLTEADKAAALARIKG-STDYDA 78 (282)
T ss_pred EEEEECC-CHHHHHHHHHHHHCCCCEE---EEECCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCC-CCCHHH
T ss_conf 7999897-7999999999996799689---9989889999999999999999997068877889999840656-799899
Q ss_pred HCCCCEEEECCCHHHHHH--H---HHHHCCCCEEEEECCCCHHCC
Q ss_conf 318847860687589999--9---975045651799614510011
Q gi|254780307|r 62 FSDTDICLMSAGHAVSSQ--M---SPKIAANGCIVIDNSSAWRYD 101 (335)
Q Consensus 62 ~~~~Divf~a~p~~~s~~--~---~~~~~~~g~~VIDlS~~~R~~ 101 (335)
++++|+|+-|.|-+...+ + ...+...++++-+++|.+...
T Consensus 79 ~~~aDlViEav~E~l~iK~~lf~~l~~~~~~~~IlaSNTS~l~i~ 123 (282)
T PRK09117 79 LKDADLVIEAATENLDLKLKILKQLDALVGPDAIIATNTSSISIT 123 (282)
T ss_pred HCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCCCH
T ss_conf 755999998785888888999999986579981898658767617
No 187
>COG3268 Uncharacterized conserved protein [Function unknown]
Probab=93.09 E-value=0.073 Score=30.56 Aligned_cols=156 Identities=19% Similarity=0.187 Sum_probs=86.6
Q ss_pred CEEEEEECCCCHHHHHHHHHHHHCCCCEEEEEEEECCCCCCEEE---ECCCCEEEEEECC-----HHHHCCCCEEEECCC
Q ss_conf 61799981667789999999974499807899997476587560---0278158998779-----436318847860687
Q gi|254780307|r 2 TFKVAVVGATGNVGREMLNIICERGFPISEVVALASERSAGTKV---PFGKETIDVQDVK-----SYDFSDTDICLMSAG 73 (335)
Q Consensus 2 ~~kvaIiGatG~vG~el~~lL~~~~~p~~~l~~~~s~~~~G~~i---~~~~~~~~~~~~~-----~~~~~~~Divf~a~p 73 (335)
-+.+-|.|||||+|.=..+-|..|++.- .+++.++ ++.- ...+.+...-++. +...+..++|+.|.+
T Consensus 6 e~d~iiYGAtGy~G~lvae~l~~~g~~~----aLAgRs~-~kl~~l~~~LG~~~~~~p~~~p~~~~~~~~~~~VVlncvG 80 (382)
T COG3268 6 EYDIIIYGATGYAGGLVAEYLAREGLTA----ALAGRSS-AKLDALRASLGPEAAVFPLGVPAALEAMASRTQVVLNCVG 80 (382)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHCCCCH----HHCCCCH-HHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCEEEEECCC
T ss_conf 4038997465521589999999748864----3216888-9998899850966444677888999999742668996146
Q ss_pred H--HHHHHHHHHHCCCCEEEEECCCCHHCCCCCCCCCCCHH-HHHHCCCCCCCEECCCCC--CCCCCCCCCCHHHHCCCC
Q ss_conf 5--89999997504565179961451001121112364101-111103334312126764--322211122001101787
Q gi|254780307|r 74 H--AVSSQMSPKIAANGCIVIDNSSAWRYDSDVPLIVPEVN-PQTISLASRKNIIANPNC--STIQLVVALKPLHDLAMI 148 (335)
Q Consensus 74 ~--~~s~~~~~~~~~~g~~VIDlS~~~R~~~d~p~~lPein-~~~i~~~~~~~~VanPgC--~at~~~l~L~PL~~~~~i 148 (335)
. ..+..+++..+.+|.--.|+++---+- |.- .-.-+.++..+..-.|+| -.++.=+.++.|.+...-
T Consensus 81 Pyt~~g~plv~aC~~~GTdY~DiTGEi~~f--------e~~i~~yh~~A~~~Ga~Ii~~cGFDsIPsDl~v~~l~~~~~~ 152 (382)
T COG3268 81 PYTRYGEPLVAACAAAGTDYADITGEIMFF--------ENSIDLYHAQAADAGARIIPGCGFDSIPSDLGVYALLKQALP 152 (382)
T ss_pred CCCCCCCHHHHHHHHHCCCEEECCCCHHHH--------HHHHHHHHHHHHHCCCEEECCCCCCCCCCCHHHHHHHHHHCC
T ss_conf 612026479999997198724135617999--------999888777887559789666777767640189999986476
Q ss_pred C--------CEEEEEC--CCCCCCCCCCCCCH
Q ss_conf 4--------1146521--52211232110000
Q gi|254780307|r 149 K--------RVVVTTY--QSVSGAGKKGIDEL 170 (335)
Q Consensus 149 ~--------~v~v~s~--~g~SGaG~~~~~eL 170 (335)
+ +..+-+. .++||.-.+...|.
T Consensus 153 d~~~~~~~t~l~l~s~t~~g~S~GTaat~~e~ 184 (382)
T COG3268 153 DGTEELIATHLALGSFTGSGISGGTAATSVEG 184 (382)
T ss_pred CCCCCHHHHHEEEEECCCCCCCCCCHHHHHHH
T ss_conf 44442233210013125677465209989999
No 188
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.06 E-value=0.44 Score=25.82 Aligned_cols=86 Identities=13% Similarity=0.129 Sum_probs=53.8
Q ss_pred EEEEECCCCHHHHHHHHHHHHCCCCEEEEEEEECCCCCCEE--EECCCCE--EEEEECCHHHHCCCCEEEECCCH----H
Q ss_conf 79998166778999999997449980789999747658756--0027815--89987794363188478606875----8
Q gi|254780307|r 4 KVAVVGATGNVGREMLNIICERGFPISEVVALASERSAGTK--VPFGKET--IDVQDVKSYDFSDTDICLMSAGH----A 75 (335)
Q Consensus 4 kvaIiGatG~vG~el~~lL~~~~~p~~~l~~~~s~~~~G~~--i~~~~~~--~~~~~~~~~~~~~~Divf~a~p~----~ 75 (335)
||.|+|. |..|.-+.++|.+++. ++....+....... +...+.. +.....++..+.++|+|+.+-+= -
T Consensus 9 ~vlV~Gl-G~sG~a~a~~L~~~G~---~V~~~D~~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~d~vV~SPGI~p~~p 84 (501)
T PRK02006 9 MVLVLGL-GESGLAMARWCARHGC---RLRVADTREAPPNLAALQAEGIDAEFVGGAFDPALLDGVELVALSPGLSPLEP 84 (501)
T ss_pred EEEEEEE-CHHHHHHHHHHHHCCC---EEEEEECCCCCCCHHHHHHCCCCCEEECCCCCHHHHCCCCEEEECCEECCCCC
T ss_conf 3999833-6889999999997898---49999899998619999860898189778898678468999998990088885
Q ss_pred HHHHHHHHHCCCCEEEEE
Q ss_conf 999999750456517996
Q gi|254780307|r 76 VSSQMSPKIAANGCIVID 93 (335)
Q Consensus 76 ~s~~~~~~~~~~g~~VID 93 (335)
...++..++.++|+.|+.
T Consensus 85 ~~~~~l~~A~~~gi~i~~ 102 (501)
T PRK02006 85 ALAALLAAARERGIPVWG 102 (501)
T ss_pred CHHHHHHHHHHCCCCEEE
T ss_conf 431999999987995876
No 189
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=93.01 E-value=0.17 Score=28.32 Aligned_cols=96 Identities=20% Similarity=0.277 Sum_probs=61.7
Q ss_pred CEEEEEECCCCHHHHHHHHHHHHCCCCEEEEEEEECCCCC-CEEEE---CCCCEEEEEECCHHHHCCCCEEEECCCHHHH
Q ss_conf 6179998166778999999997449980789999747658-75600---2781589987794363188478606875899
Q gi|254780307|r 2 TFKVAVVGATGNVGREMLNIICERGFPISEVVALASERSA-GTKVP---FGKETIDVQDVKSYDFSDTDICLMSAGHAVS 77 (335)
Q Consensus 2 ~~kvaIiGatG~vG~el~~lL~~~~~p~~~l~~~~s~~~~-G~~i~---~~~~~~~~~~~~~~~~~~~Divf~a~p~~~s 77 (335)
.+||+|+|- |-.|....+.|.++++ ++.....+... +.... ..+-+........+++..+|+++..=+=...
T Consensus 7 ~~kv~V~GL-G~sG~a~a~~L~~~G~---~v~v~D~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~d~vV~SPGi~~~ 82 (448)
T COG0771 7 GKKVLVLGL-GKSGLAAARFLLKLGA---EVTVSDDRPAPEGLAAQPLLLEGIEVELGSHDDEDLAEFDLVVKSPGIPPT 82 (448)
T ss_pred CCEEEEEEC-CCCCHHHHHHHHHCCC---EEEEECCCCCCCCHHHHHHHCCCCEEECCCCCHHCCCCCCEEEECCCCCCC
T ss_conf 997999926-6510999999997798---699983898765323444420372231376411001347789989999998
Q ss_pred HHHHHHHCCCCEEEE-ECCCCHHCC
Q ss_conf 999975045651799-614510011
Q gi|254780307|r 78 SQMSPKIAANGCIVI-DNSSAWRYD 101 (335)
Q Consensus 78 ~~~~~~~~~~g~~VI-DlS~~~R~~ 101 (335)
.+++.++.++|..|+ |..=.+|..
T Consensus 83 ~p~v~~A~~~gi~i~~dieL~~r~~ 107 (448)
T COG0771 83 HPLVEAAKAAGIEIIGDIELFYRLS 107 (448)
T ss_pred CHHHHHHHHCCCCEEEHHHHHHHHC
T ss_conf 8899999986993774888898744
No 190
>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.92 E-value=0.3 Score=26.85 Aligned_cols=86 Identities=17% Similarity=0.275 Sum_probs=55.3
Q ss_pred EEEEEECCCCHHHHHHHHHHHHCCCCEEEEEEEECCCCC-C-EEEECCCCEEEEEECCHHHHCCCCEEEECCCHHHHHHH
Q ss_conf 179998166778999999997449980789999747658-7-56002781589987794363188478606875899999
Q gi|254780307|r 3 FKVAVVGATGNVGREMLNIICERGFPISEVVALASERSA-G-TKVPFGKETIDVQDVKSYDFSDTDICLMSAGHAVSSQM 80 (335)
Q Consensus 3 ~kvaIiGatG~vG~el~~lL~~~~~p~~~l~~~~s~~~~-G-~~i~~~~~~~~~~~~~~~~~~~~Divf~a~p~~~s~~~ 80 (335)
-||.|+|. |..|.-..++|.+++. ++....+..+. . +.+.. +-++......++.+.++|+++.+-+=....+.
T Consensus 7 k~v~V~Gl-G~sG~s~~~~L~~~G~---~v~~~D~~~~~~~~~~l~~-~~~~~~g~~~~~~~~~~d~vV~SPGI~~~~p~ 81 (438)
T PRK03806 7 KNVVIIGL-GLTGLSCVDFFLARGV---TPRVMDTRMTPPGLDKLPE-NVERHTGSLNDEWLLAADLIVASPGIALAHPS 81 (438)
T ss_pred CEEEEEEE-CHHHHHHHHHHHHCCC---EEEEEECCCCCHHHHHHHC-CCCEEECCCCHHHHCCCCEEEECCCCCCCCHH
T ss_conf 98999945-7888999999997899---6999989999005788645-88466577796680679999989978998989
Q ss_pred HHHHCCCCEEEEE
Q ss_conf 9750456517996
Q gi|254780307|r 81 SPKIAANGCIVID 93 (335)
Q Consensus 81 ~~~~~~~g~~VID 93 (335)
...+.++|+.|+.
T Consensus 82 ~~~a~~~~i~i~s 94 (438)
T PRK03806 82 LSAAADAGVEIVG 94 (438)
T ss_pred HHHHHHCCCCEEE
T ss_conf 9999987994776
No 191
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit; InterPro: IPR014215 This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by IPR014214 from INTERPRO. This protein is also known as SpoVFA..
Probab=92.81 E-value=0.11 Score=29.40 Aligned_cols=63 Identities=16% Similarity=0.333 Sum_probs=43.8
Q ss_pred EEEEEECCCCHHHHHHHHHHHHCCCCEEEEEEEECCCCCCEEEECCCCEEEEEECCHHHHCCCCEEEECCC
Q ss_conf 17999816677899999999744998078999974765875600278158998779436318847860687
Q gi|254780307|r 3 FKVAVVGATGNVGREMLNIICERGFPISEVVALASERSAGTKVPFGKETIDVQDVKSYDFSDTDICLMSAG 73 (335)
Q Consensus 3 ~kvaIiGatG~vG~el~~lL~~~~~p~~~l~~~~s~~~~G~~i~~~~~~~~~~~~~~~~~~~~Divf~a~p 73 (335)
+.|+|+|+ =.-=.|+++-|.+- |...+..++=++ +..+......+.+.+.+|+.+|+|++-.+
T Consensus 2 ~~iavIGG-DaR~lE~I~~L~~~--P~Ak~~l~Gf~q-----L~~gF~G~~~~~~~~~~~~~~DvviLPv~ 64 (288)
T TIGR02853 2 IHIAVIGG-DARQLELIRKLEEL--PDAKISLIGFDQ-----LEDGFTGVEKLELDELDLSTLDVVILPVQ 64 (288)
T ss_pred CEEEEECC-CHHHHHHHHHHHHC--CCCEEEEECCCC-----CCCCCCCHHHHCCCCCCCCCCCEEEECCC
T ss_conf 78999837-61378889999737--797899963663-----00231330010134244446667881678
No 192
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=92.79 E-value=0.37 Score=26.29 Aligned_cols=97 Identities=15% Similarity=0.233 Sum_probs=58.2
Q ss_pred CCEEEEEECCCCHHHHHHHHHHHHCCCCEEEEEEEECC-CCCCE---EEE-------------CCCCEE---EEEEC-C-
Q ss_conf 96179998166778999999997449980789999747-65875---600-------------278158---99877-9-
Q gi|254780307|r 1 MTFKVAVVGATGNVGREMLNIICERGFPISEVVALASE-RSAGT---KVP-------------FGKETI---DVQDV-K- 58 (335)
Q Consensus 1 M~~kvaIiGatG~vG~el~~lL~~~~~p~~~l~~~~s~-~~~G~---~i~-------------~~~~~~---~~~~~-~- 58 (335)
|--||+|+|| |..|..+..++..+++++ ..+..+ +...+ .+. ....+. .+.-. +
T Consensus 1 mIkkV~ViGa-G~MG~~IA~~~a~~G~~V---~l~D~~~e~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~dl 76 (289)
T PRK09260 1 MMEKIVVVGA-GVMGRGIAYVFASSGFQT---TLVDISQEQLASAQQEIESILEDGVALGKVTEAAAQAALARLSYSLDL 76 (289)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCCCCE---EEEECCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCH
T ss_conf 9676999796-887899999999689988---999799899999999999999999871799989999999558766888
Q ss_pred HHHHCCCCEEEECCCHHHHHH--HH---HHHCCCCEEEEECCCCHHCC
Q ss_conf 436318847860687589999--99---75045651799614510011
Q gi|254780307|r 59 SYDFSDTDICLMSAGHAVSSQ--MS---PKIAANGCIVIDNSSAWRYD 101 (335)
Q Consensus 59 ~~~~~~~Divf~a~p~~~s~~--~~---~~~~~~g~~VIDlS~~~R~~ 101 (335)
++.++++|+|+-|.|-....+ +. .++...++++-+++|.+...
T Consensus 77 ~~a~~~aDlViEav~E~l~iK~~v~~~l~~~~~~~~IlaSNTSsl~is 124 (289)
T PRK09260 77 KEAVAGADLLIEAVPEKLEIKQAVFETADAHAPAEALIATNTSTLSPT 124 (289)
T ss_pred HHHHCCCCEEEECCCCCHHHCHHHHHHHHHCCCCCCEEEECCCCCCCH
T ss_conf 998476999998886863236899999860689980898558887711
No 193
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=92.74 E-value=0.42 Score=25.92 Aligned_cols=75 Identities=21% Similarity=0.316 Sum_probs=50.8
Q ss_pred EEEEEECCCCHHHHHHHHHHHHCCCCEEEEEEEECCCCCCEEEECCCCEEEEEECCHHHHCCCCEEEECCCHHHHHHHHH
Q ss_conf 17999816677899999999744998078999974765875600278158998779436318847860687589999997
Q gi|254780307|r 3 FKVAVVGATGNVGREMLNIICERGFPISEVVALASERSAGTKVPFGKETIDVQDVKSYDFSDTDICLMSAGHAVSSQMSP 82 (335)
Q Consensus 3 ~kvaIiGatG~vG~el~~lL~~~~~p~~~l~~~~s~~~~G~~i~~~~~~~~~~~~~~~~~~~~Divf~a~p~~~s~~~~~ 82 (335)
-++.|+|-|..||+-|-.+|.+++ ..+....|... ++ .....++|+++.|.|.- .-+-+
T Consensus 29 k~vvVvGrS~~VG~Pla~lL~~~~---atVt~~hs~t~---------------~l-~~~~~~ADIvI~a~G~p--~~i~~ 87 (140)
T cd05212 29 KKVLVVGRSGIVGAPLQCLLQRDG---ATVYSCDWKTI---------------QL-QSKVHDADVVVVGSPKP--EKVPT 87 (140)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCC---CEEEEECCCCC---------------CH-HHHHHHCCEEEECCCCC--CCCCH
T ss_conf 999999998124999999999788---98999469995---------------98-99852349999816876--72789
Q ss_pred HHCCCCEEEEECCCCH
Q ss_conf 5045651799614510
Q gi|254780307|r 83 KIAANGCIVIDNSSAW 98 (335)
Q Consensus 83 ~~~~~g~~VIDlS~~~ 98 (335)
.+.+.|..|||.+...
T Consensus 88 ~~vk~GavvIDvGi~~ 103 (140)
T cd05212 88 EWIKPGATVINCSPTK 103 (140)
T ss_pred HHCCCCCEEEEECCCC
T ss_conf 7767998899803775
No 194
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.73 E-value=0.27 Score=27.15 Aligned_cols=87 Identities=17% Similarity=0.235 Sum_probs=51.9
Q ss_pred EEEEEECCCCHHHHHHHHHHHHCCCCEEEEEEEECCCC--CCEE---EECCCCEEEEEECCHHHHCCCCEEEECCCHHHH
Q ss_conf 17999816677899999999744998078999974765--8756---002781589987794363188478606875899
Q gi|254780307|r 3 FKVAVVGATGNVGREMLNIICERGFPISEVVALASERS--AGTK---VPFGKETIDVQDVKSYDFSDTDICLMSAGHAVS 77 (335)
Q Consensus 3 ~kvaIiGatG~vG~el~~lL~~~~~p~~~l~~~~s~~~--~G~~---i~~~~~~~~~~~~~~~~~~~~Divf~a~p~~~s 77 (335)
-||.|+|. |..|..+.++|.++++ ++.......+ .++. +.-.+-.+..-+-..+.+.++|+|+.+-+=...
T Consensus 15 kkv~i~Gl-G~sG~a~a~~L~~~g~---~v~~~D~~~~~~~~~~~~~l~~~gi~~~~g~~~~~~~~~~d~vv~SPgI~~~ 90 (458)
T PRK01710 15 KKVAVVGI-GVSNIPLIKFLVKLGA---KVTAFDKKSEEELGEISLELKEKGVNLELGENYLDKLTGFDVIFKTPSMRID 90 (458)
T ss_pred CEEEEEEE-CHHHHHHHHHHHHCCC---EEEEEECCCCHHHHHHHHHHHHCCCEEEECCCHHHHCCCCCEEEECCCCCCC
T ss_conf 96999978-7889999999997889---7999989884314899999985799899578405423788889989987998
Q ss_pred HHHHHHHCCCCEEEEE
Q ss_conf 9999750456517996
Q gi|254780307|r 78 SQMSPKIAANGCIVID 93 (335)
Q Consensus 78 ~~~~~~~~~~g~~VID 93 (335)
...+..+.++|+.|+.
T Consensus 91 ~p~~~~a~~~gi~v~~ 106 (458)
T PRK01710 91 SPELVKAKEEGAYITS 106 (458)
T ss_pred CHHHHHHHHCCCCEEC
T ss_conf 9999999987993740
No 195
>TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1.1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process.
Probab=92.70 E-value=0.11 Score=29.45 Aligned_cols=94 Identities=21% Similarity=0.359 Sum_probs=57.1
Q ss_pred EEEEECCCCHHHHHHHHHHHHCCCCEEEEEEEECCC--CCCEE-----E----------ECCCCEEEE-----EECCHHH
Q ss_conf 799981667789999999974499807899997476--58756-----0----------027815899-----8779436
Q gi|254780307|r 4 KVAVVGATGNVGREMLNIICERGFPISEVVALASER--SAGTK-----V----------PFGKETIDV-----QDVKSYD 61 (335)
Q Consensus 4 kvaIiGatG~vG~el~~lL~~~~~p~~~l~~~~s~~--~~G~~-----i----------~~~~~~~~~-----~~~~~~~ 61 (335)
||.|.||+|.+|++|.+.|. . +..+...+.++. ..|+. | .....+..| .++|..+
T Consensus 1 rilitGa~GQlG~~L~~~l~--~-~g~~~~~~~~~~~~~~~~~~~~~Dl~dP~~l~~~~r~~~Pd~vvntAAYT~VD~AE 77 (317)
T TIGR01214 1 RILITGANGQLGRELVQQLS--K-PGRVVVALTRSTRLKLAARWSQLDLTDPEALEELLRAIRPDAVVNTAAYTDVDGAE 77 (317)
T ss_pred CEEEECCCCHHHHHHHHHCC--C-CCCEEEEECCCCCCCHHHHHHHHCCCCHHHHHHHHHHHCCCEEEECCHHCCCCCCC
T ss_conf 97887387567999999707--8-88278643687776113365440622468899999852875376230110100003
Q ss_pred HCCCCEEEECCCHHHHHHHHHHHCCCCEEEEECCCCHHCCC
Q ss_conf 31884786068758999999750456517996145100112
Q gi|254780307|r 62 FSDTDICLMSAGHAVSSQMSPKIAANGCIVIDNSSAWRYDS 102 (335)
Q Consensus 62 ~~~~Divf~a~p~~~s~~~~~~~~~~g~~VIDlS~~~R~~~ 102 (335)
++-|.+|- .-.-.+..++..+.+.|..+|=.|.||=+|-
T Consensus 78 -~~~~~Aya-vNa~A~~~lA~~A~~~Ga~~vh~STDYVFDG 116 (317)
T TIGR01214 78 -SDPEKAYA-VNALAPQNLARAAARVGARLVHISTDYVFDG 116 (317)
T ss_pred -CCHHHHHH-HHHHHHHHHHHHHHHCCCEEEEEEECEEECC
T ss_conf -77778765-7407899999999866915999863423447
No 196
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.65 E-value=0.29 Score=26.93 Aligned_cols=85 Identities=22% Similarity=0.254 Sum_probs=52.1
Q ss_pred EEEEEECCCCHHHHHHHHHHHHCCCCEEEEEEEECCCCC-CEEEECC-CCEEEEEECCHHHHCCCCEEEECCCHHHHHHH
Q ss_conf 179998166778999999997449980789999747658-7560027-81589987794363188478606875899999
Q gi|254780307|r 3 FKVAVVGATGNVGREMLNIICERGFPISEVVALASERSA-GTKVPFG-KETIDVQDVKSYDFSDTDICLMSAGHAVSSQM 80 (335)
Q Consensus 3 ~kvaIiGatG~vG~el~~lL~~~~~p~~~l~~~~s~~~~-G~~i~~~-~~~~~~~~~~~~~~~~~Divf~a~p~~~s~~~ 80 (335)
=||.|+|. |..|....++|.+++. ++......... -+..... ...+.. .-....+.++|+++.+-+=.....+
T Consensus 18 ~kvlV~Gl-G~SG~s~a~~L~~~G~---~v~~~D~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~vV~SPGI~~~~p~ 92 (476)
T PRK00141 18 GRVLVAGA-GVSGLGIAKMLSELGC---DVVVADDNETQRHMLIEVVDVADIST-AQASDALDSYSIVVTSPGWRPDSPL 92 (476)
T ss_pred CCEEEEEE-CHHHHHHHHHHHHCCC---EEEEEECCCCHHHHHHHHCCCCEECC-CCHHHHHCCCCEEEECCCCCCCCHH
T ss_conf 98899922-7889999999997899---79999899870357887479856515-5306564689999989978997999
Q ss_pred HHHHCCCCEEEE
Q ss_conf 975045651799
Q gi|254780307|r 81 SPKIAANGCIVI 92 (335)
Q Consensus 81 ~~~~~~~g~~VI 92 (335)
...+.+.|+.||
T Consensus 93 l~~a~~~gi~vi 104 (476)
T PRK00141 93 LVDAQSAGLEVI 104 (476)
T ss_pred HHHHHHCCCCEE
T ss_conf 999998799577
No 197
>COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism]
Probab=92.54 E-value=0.16 Score=28.43 Aligned_cols=16 Identities=44% Similarity=0.536 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHH
Q ss_conf 3679999999998853
Q gi|254780307|r 319 GAALNAVQIAELVAQE 334 (335)
Q Consensus 319 GAAg~AVq~anlm~~~ 334 (335)
|-|.+=+..+++++++
T Consensus 302 G~aieD~a~a~~vy~~ 317 (330)
T COG2423 302 GLALEDVAAAKLVYER 317 (330)
T ss_pred CCCHHHHHHHHHHHHH
T ss_conf 8308999999999997
No 198
>KOG1431 consensus
Probab=92.51 E-value=0.22 Score=27.61 Aligned_cols=37 Identities=32% Similarity=0.517 Sum_probs=31.2
Q ss_pred EEEEEECCCCHHHHHHHHHHHHCCCCEEEEEEEECCC
Q ss_conf 1799981667789999999974499807899997476
Q gi|254780307|r 3 FKVAVVGATGNVGREMLNIICERGFPISEVVALASER 39 (335)
Q Consensus 3 ~kvaIiGatG~vG~el~~lL~~~~~p~~~l~~~~s~~ 39 (335)
+||.+-|.||+||..+.+.+++..++.-+.++.+|..
T Consensus 2 ~kIlVtGg~GLVGsAi~~vv~~q~~~~e~wvf~~skd 38 (315)
T KOG1431 2 KKILVTGGTGLVGSAIVKVVQEQGFDDENWVFIGSKD 38 (315)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCCCCCEEEECCCC
T ss_conf 5599936874178999999985388876569951554
No 199
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=92.51 E-value=0.4 Score=26.11 Aligned_cols=67 Identities=28% Similarity=0.480 Sum_probs=39.3
Q ss_pred EEEECCCCHHHHHHHHHHHHCCCCEEEEEEEECC--CCCCEEEE------CCCCEEEEEECCHHHHCCCCEEEECCC
Q ss_conf 9998166778999999997449980789999747--65875600------278158998779436318847860687
Q gi|254780307|r 5 VAVVGATGNVGREMLNIICERGFPISEVVALASE--RSAGTKVP------FGKETIDVQDVKSYDFSDTDICLMSAG 73 (335)
Q Consensus 5 vaIiGatG~vG~el~~lL~~~~~p~~~l~~~~s~--~~~G~~i~------~~~~~~~~~~~~~~~~~~~Divf~a~p 73 (335)
|+|+|+ |.||..+.-.|..++. ..||.++.-. ...|.... +......+..-+-++++++|+++.+.+
T Consensus 1 V~IIGa-G~VG~~~A~~l~~~~l-~~el~L~Di~~~~a~g~a~Dl~~~~~~~~~~~~~~~~~~~~~~daDvvVitaG 75 (300)
T cd00300 1 ITIIGA-GNVGAAVAFALIAKGL-ASELVLVDVNEEKAKGDALDLSHASAFLATGTIVRGGDYADAADADIVVITAG 75 (300)
T ss_pred CEEECC-CHHHHHHHHHHHHCCC-CCEEEEECCCCCCCHHHHHHHHHCCCCCCCCEEECCCCHHHHCCCCEEEECCC
T ss_conf 989896-8899999999986799-88799981899811568888772563468853982798899679999998789
No 200
>KOG1430 consensus
Probab=92.42 E-value=0.26 Score=27.19 Aligned_cols=33 Identities=21% Similarity=0.393 Sum_probs=26.5
Q ss_pred EEEEEECCCCHHHHHHHHHHHHCCCCEEEEEEEE
Q ss_conf 1799981667789999999974499807899997
Q gi|254780307|r 3 FKVAVVGATGNVGREMLNIICERGFPISEVVALA 36 (335)
Q Consensus 3 ~kvaIiGatG~vG~el~~lL~~~~~p~~~l~~~~ 36 (335)
..+.|+|++|+.|+.|++.|.++. +..++..+.
T Consensus 5 ~~vlVtGG~GflG~hlv~~L~~~~-~~~~irv~D 37 (361)
T KOG1430 5 LSVLVTGGSGFLGQHLVQALLENE-LKLEIRVVD 37 (361)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCC-CCCEEEEEC
T ss_conf 779998983378999999998456-661799953
No 201
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=92.33 E-value=0.43 Score=25.87 Aligned_cols=94 Identities=17% Similarity=0.322 Sum_probs=53.0
Q ss_pred EEEEEECCCCHHHHHHHHHHHHCCCCEEEEEEEECCCCC-CEEEE--CCCCEEEEEECC-----HHHHCCCCEEEECCCH
Q ss_conf 179998166778999999997449980789999747658-75600--278158998779-----4363188478606875
Q gi|254780307|r 3 FKVAVVGATGNVGREMLNIICERGFPISEVVALASERSA-GTKVP--FGKETIDVQDVK-----SYDFSDTDICLMSAGH 74 (335)
Q Consensus 3 ~kvaIiGatG~vG~el~~lL~~~~~p~~~l~~~~s~~~~-G~~i~--~~~~~~~~~~~~-----~~~~~~~Divf~a~p~ 74 (335)
|++.|+|+ |-+|..+.+.|.+.+| ++..+...... -+... +...-......+ +....++|.+..++++
T Consensus 1 m~iiIiG~-G~vG~~va~~L~~~g~---~Vv~Id~d~~~~~~~~~~~~~~~~v~gd~t~~~~L~~agi~~aD~vva~t~~ 76 (225)
T COG0569 1 MKIIIIGA-GRVGRSVARELSEEGH---NVVLIDRDEERVEEFLADELDTHVVIGDATDEDVLEEAGIDDADAVVAATGN 76 (225)
T ss_pred CEEEEECC-CHHHHHHHHHHHHCCC---EEEEEECCHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCCCCCCEEEEEECC
T ss_conf 98999898-5788999999987899---0899976889999863200044999926889899986798638999998088
Q ss_pred HHHHHHHHHHCCC--CE--EEEECCCCHHC
Q ss_conf 8999999750456--51--79961451001
Q gi|254780307|r 75 AVSSQMSPKIAAN--GC--IVIDNSSAWRY 100 (335)
Q Consensus 75 ~~s~~~~~~~~~~--g~--~VIDlS~~~R~ 100 (335)
+...-+.-.+..+ |. +|.-..++.+.
T Consensus 77 d~~N~i~~~la~~~~gv~~viar~~~~~~~ 106 (225)
T COG0569 77 DEVNSVLALLALKEFGVPRVIARARNPEHE 106 (225)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEEECCCHHH
T ss_conf 679999999999873998499995694167
No 202
>PRK06395 phosphoribosylamine--glycine ligase; Provisional
Probab=92.29 E-value=0.58 Score=25.09 Aligned_cols=97 Identities=18% Similarity=0.277 Sum_probs=55.6
Q ss_pred CCEEEEEECCCCHHHHHHHHHHHHCCCCEEEEEEEECCCCCCEEEECCCCEEE--EEECCHH-HH---CCCCEEEECCCH
Q ss_conf 96179998166778999999997449980789999747658756002781589--9877943-63---188478606875
Q gi|254780307|r 1 MTFKVAVVGATGNVGREMLNIICERGFPISEVVALASERSAGTKVPFGKETID--VQDVKSY-DF---SDTDICLMSAGH 74 (335)
Q Consensus 1 M~~kvaIiGatG~vG~el~~lL~~~~~p~~~l~~~~s~~~~G~~i~~~~~~~~--~~~~~~~-~~---~~~Divf~a~p~ 74 (335)
|+|||-|||. |----.|...|.+. |.. +..+-.+...|.. ....+... ..+.+.. +| .++|+|+-.-..
T Consensus 1 m~MkVLViGs-GGREHAla~kl~~s--~~~-~~~~~g~gn~g~~-~~~~~~~~~~~~d~~~i~~~a~~~~idLvvvGPE~ 75 (435)
T PRK06395 1 MTMKVMLVGS-GGREDAIARAIKRS--GAI-LFSVIGHENPSIK-KLSKKYLFYDEKDYDLIEDFALKNNVDIVFVGPDP 75 (435)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHCC--CCC-EEEEECCCCHHHH-HHCCCCCCCCCCCHHHHHHHHHHCCCCEEEECCCH
T ss_conf 9877999887-88999999998559--884-4999899967877-62323465685699999999998499999989767
Q ss_pred HHHHHHHHHHCCCCEEEEECCCCH-HCCC
Q ss_conf 899999975045651799614510-0112
Q gi|254780307|r 75 AVSSQMSPKIAANGCIVIDNSSAW-RYDS 102 (335)
Q Consensus 75 ~~s~~~~~~~~~~g~~VIDlS~~~-R~~~ 102 (335)
-.+.-++..|.++|.+|+=-+... |++.
T Consensus 76 pL~~Gi~D~l~~~gi~vFGP~k~aA~LE~ 104 (435)
T PRK06395 76 VLATPLVNNLLKRGIKVASPTMEAAMIET 104 (435)
T ss_pred HHHCCHHHHHHHCCCCEECCHHHHHHHHC
T ss_conf 88661455997689946684288732632
No 203
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=92.27 E-value=0.59 Score=25.05 Aligned_cols=88 Identities=18% Similarity=0.299 Sum_probs=53.0
Q ss_pred EEEEEECCCCHHHHHHHHHHHHCCCCEEEEEEEECCC------CCCEEEECCCC--EE-EEEECCHHHHCCCCEEEECCC
Q ss_conf 1799981667789999999974499807899997476------58756002781--58-998779436318847860687
Q gi|254780307|r 3 FKVAVVGATGNVGREMLNIICERGFPISEVVALASER------SAGTKVPFGKE--TI-DVQDVKSYDFSDTDICLMSAG 73 (335)
Q Consensus 3 ~kvaIiGatG~vG~el~~lL~~~~~p~~~l~~~~s~~------~~G~~i~~~~~--~~-~~~~~~~~~~~~~Divf~a~p 73 (335)
|||+|+|+ |-+|.-+--.|.+.++ ++.++.-++ +.|-.+..... .. .....+.+.+..+|++|.++-
T Consensus 1 mkI~IlGa-GAvG~l~g~~L~~~g~---~V~~~~R~~~~~~l~~~GL~i~~~~~~~~~~~~~~~~~~~~~~~Dlviv~vK 76 (307)
T COG1893 1 MKILILGA-GAIGSLLGARLAKAGH---DVTLLVRSRRLEALKKKGLRIEDEGGNFTTPVVAATDAEALGPADLVIVTVK 76 (307)
T ss_pred CEEEEECC-CHHHHHHHHHHHHCCC---CEEEEECHHHHHHHHHCCEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEEC
T ss_conf 95999878-7899999999985899---5799810899999987897998168852244323567333678888999804
Q ss_pred HHHHHHHHHHHC---CCCEEEEEC
Q ss_conf 589999997504---565179961
Q gi|254780307|r 74 HAVSSQMSPKIA---ANGCIVIDN 94 (335)
Q Consensus 74 ~~~s~~~~~~~~---~~g~~VIDl 94 (335)
+-...+..+.+. ...+.|+-+
T Consensus 77 a~q~~~al~~l~~~~~~~t~vl~l 100 (307)
T COG1893 77 AYQLEEALPSLAPLLGPNTVVLFL 100 (307)
T ss_pred CCCHHHHHHHHHHHCCCCCEEEEE
T ss_conf 223899999987307998489997
No 204
>cd01490 Ube1_repeat2 Ubiquitin activating enzyme (E1), repeat 2. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the second repeat of Ub-E1.
Probab=92.24 E-value=0.83 Score=24.15 Aligned_cols=106 Identities=13% Similarity=0.202 Sum_probs=58.6
Q ss_pred EEEEECCCCHHHHHHHHHHHHCCCC---EEEEEEEE---------------CCCCCCEEEE--------CCCCEEEEE--
Q ss_conf 7999816677899999999744998---07899997---------------4765875600--------278158998--
Q gi|254780307|r 4 KVAVVGATGNVGREMLNIICERGFP---ISEVVALA---------------SERSAGTKVP--------FGKETIDVQ-- 55 (335)
Q Consensus 4 kvaIiGatG~vG~el~~lL~~~~~p---~~~l~~~~---------------s~~~~G~~i~--------~~~~~~~~~-- 55 (335)
||.+||| |-+|-|+++.|.--++- ..++..+. .++..|+.-+ ....++.+.
T Consensus 1 kvlvVGA-GgIGCEllKnlal~G~~~~~~G~i~v~D~D~Ie~SNLnRQFLFr~~digk~Ks~vA~~~v~~~np~~~i~~~ 79 (435)
T cd01490 1 KVFLVGA-GAIGCELLKNFALMGVGTGESGEITVTDMDNIEKSNLNRQFLFRPHDVGKPKSEVAAAAVKAMNPDLKITAL 79 (435)
T ss_pred CEEEECC-CHHHHHHHHHHHHCCCCCCCCCCEEEEECCCEECCCCCCCCCCCHHHCCCCHHHHHHHHHHHHCCCCEEEEE
T ss_conf 9899937-764189999999838786898808997088473357534427564448973999999999987899747860
Q ss_pred ---------EC-CHHHHCCCCEEEECCCHHHHHHHHHHH-CCCCEEEEECCCCHHCCCCCCCCCCCH
Q ss_conf ---------77-943631884786068758999999750-456517996145100112111236410
Q gi|254780307|r 56 ---------DV-KSYDFSDTDICLMSAGHAVSSQMSPKI-AANGCIVIDNSSAWRYDSDVPLIVPEV 111 (335)
Q Consensus 56 ---------~~-~~~~~~~~Divf~a~p~~~s~~~~~~~-~~~g~~VIDlS~~~R~~~d~p~~lPei 111 (335)
++ ++.-|++.|+|+.|+.+-.++.|+.+. ...+...||.... -+.-++-.++|.+
T Consensus 80 ~~~v~~~te~~f~~~f~~~~d~v~naLDNv~aR~yv~~~Cv~~~~PLiEsGT~-G~kG~vqviiP~~ 145 (435)
T cd01490 80 QNRVGPETEHIFNDEFWEKLDGVANALDNVDARMYVDRRCVYYRKPLLESGTL-GTKGNTQVVIPHL 145 (435)
T ss_pred CCCCCCCCCCCCCHHHHHHCCEEEECCCCHHHHHHHHHHHHHCCCCEEECCCC-CCCCCEEEEECCC
T ss_conf 25456774233677678438899988578899999999999749983744678-7675369983786
No 205
>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.09 E-value=0.18 Score=28.14 Aligned_cols=84 Identities=23% Similarity=0.267 Sum_probs=50.8
Q ss_pred EEEEECCCCHHHHHHHHHHHHCCCCEEEEEEEECCCCCCEEEECCCCEEEEEECCHHHHCCCCEEEECCCHH----HHHH
Q ss_conf 799981667789999999974499807899997476587560027815899877943631884786068758----9999
Q gi|254780307|r 4 KVAVVGATGNVGREMLNIICERGFPISEVVALASERSAGTKVPFGKETIDVQDVKSYDFSDTDICLMSAGHA----VSSQ 79 (335)
Q Consensus 4 kvaIiGatG~vG~el~~lL~~~~~p~~~l~~~~s~~~~G~~i~~~~~~~~~~~~~~~~~~~~Divf~a~p~~----~s~~ 79 (335)
||.|+|. |-.|....++|.+++. ++......... ........+.+.++...+|.++|.++.+-+=. ....
T Consensus 11 ~v~v~Gl-G~sG~s~a~~L~~~G~---~V~~~D~~~~~--~~~~~~~g~~~~~~~~~~~~~~~~iV~SPGIp~~~p~~~~ 84 (457)
T PRK01390 11 TVALFGL-GGSGLATARALKAGGA---EVIAWDDNPDS--VAKAAAAGIATADLRTADWSQFAALVLSPGVPLTHPKPHW 84 (457)
T ss_pred EEEEEEE-CHHHHHHHHHHHHCCC---EEEEEECCCHH--HHHHHHCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCHH
T ss_conf 8999943-6999999999997899---79999399206--6899875983145541232038789999988865667319
Q ss_pred HHHHHCCCCEEEEE
Q ss_conf 99750456517996
Q gi|254780307|r 80 MSPKIAANGCIVID 93 (335)
Q Consensus 80 ~~~~~~~~g~~VID 93 (335)
.+.++.+.|+.|+.
T Consensus 85 ~v~~a~~~gi~v~s 98 (457)
T PRK01390 85 TVDLARAAGVEVIG 98 (457)
T ss_pred HHHHHHHCCCEEEE
T ss_conf 99999985991860
No 206
>TIGR01746 Thioester-redct thioester reductase domain; InterPro: IPR010080 This domain includes the C-terminal domain from the fungal alpha aminoadipate reductase enzyme (also known as aminoadipate semialdehyde dehydrogenase) which is involved in the biosynthesis of lysine , as well as the reductase-containing component of the myxochelin biosynthetic gene cluster, MxcG . The mechanism of reduction involves activation of the substrate by adenylation and transfer to a covalently-linked pantetheine cofactor as a thioester. This thioester is then reduced to give an aldehyde (thus releasing the product) and a regenerated pantetheine thiol ; in myxochelin biosynthesis this aldehyde is further reduced to an alcohol or converted to an amine by an aminotransferase. This is a fundamentally different reaction than beta-ketoreductase domains of polyketide synthases which act at a carbonyl two carbons removed from the thioester and forms an alcohol as a product. The majority of bacterial sequences containing this domain are non-ribosomal peptide synthetases in which this domain is similarly located proximal to a thiolation domain (IPR006163 from INTERPRO). In some cases this domain is found at the end of a polyketide synthetase enzyme, but is unlike ketoreductase domains which are found before the thiolase domains. Exceptions to this observed relationship with the thiolase domain include three proteins which consist of stand-alone reductase domains (from Mycobacterium leprae, Anabaena and from Streptomyces coelicolor) and one protein (from Nostoc) which contains N-terminal homology with a small group of hypothetical proteins but no evidence of a thiolation domain next to the putative reductase domain.; GO: 0004043 L-aminoadipate-semialdehyde dehydrogenase activity.
Probab=92.02 E-value=0.22 Score=27.65 Aligned_cols=91 Identities=21% Similarity=0.251 Sum_probs=49.5
Q ss_pred EEEEECCCCHHHHHHHHHHHHCCC-CEEEEEEEE----CCCCCCEEEECCCC--EEEEEECCHHHHCC-CCEEEECCC--
Q ss_conf 799981667789999999974499-807899997----47658756002781--58998779436318-847860687--
Q gi|254780307|r 4 KVAVVGATGNVGREMLNIICERGF-PISEVVALA----SERSAGTKVPFGKE--TIDVQDVKSYDFSD-TDICLMSAG-- 73 (335)
Q Consensus 4 kvaIiGatG~vG~el~~lL~~~~~-p~~~l~~~~----s~~~~G~~i~~~~~--~~~~~~~~~~~~~~-~Divf~a~p-- 73 (335)
+|-+-|||||.|..|++-|..++| +..+|..+- +++.+=+++....+ ... +..+++.. -.|.+.+.+
T Consensus 1 ~vlLTGAtGfLG~~ll~~Ll~~~~s~~~~v~CLVRva~~~~~A~~RL~~~~~Gd~~~---l~~~~~~~~~Ri~~~~GDl~ 77 (405)
T TIGR01746 1 TVLLTGATGFLGAYLLEELLRRNDSTEAKVICLVRVAKSEEHAMERLREALRGDSYR---LWQEDLASIERIEVVAGDLS 77 (405)
T ss_pred CEEEECCCHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCHHHHHHHHHHHCCCCHHH---HHHHHHHHHCCEEEEECCCC
T ss_conf 958733626789999999972048864056877751498799999998516842233---22333331136058868746
Q ss_pred ---HHHHHHHHHHHC---CCCEEEEECCCC
Q ss_conf ---589999997504---565179961451
Q gi|254780307|r 74 ---HAVSSQMSPKIA---ANGCIVIDNSSA 97 (335)
Q Consensus 74 ---~~~s~~~~~~~~---~~g~~VIDlS~~ 97 (335)
=|.+..-+..+. +.==.||++.+.
T Consensus 78 ~p~lGL~~~~~~~L~Gqs~~~D~i~HngA~ 107 (405)
T TIGR01746 78 KPRLGLSEAEWERLAGQSENVDTIVHNGAL 107 (405)
T ss_pred CCCCCCCHHHHHHCCCCCEECCEEEECCEE
T ss_conf 666788716773247773003867836414
No 207
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=92.00 E-value=0.77 Score=24.34 Aligned_cols=91 Identities=13% Similarity=0.220 Sum_probs=55.9
Q ss_pred EEEEEECCCCHHHHHHHHHHHHCCCCEEEEEEEEC---------------CCCCCEE--------EECCCCEEEEE----
Q ss_conf 17999816677899999999744998078999974---------------7658756--------00278158998----
Q gi|254780307|r 3 FKVAVVGATGNVGREMLNIICERGFPISEVVALAS---------------ERSAGTK--------VPFGKETIDVQ---- 55 (335)
Q Consensus 3 ~kvaIiGatG~vG~el~~lL~~~~~p~~~l~~~~s---------------~~~~G~~--------i~~~~~~~~~~---- 55 (335)
-+|.|+|+ |-+|..+...|..-+. .+|..+.. ++..|++ +..-..+..++
T Consensus 33 s~VlivG~-GGlG~~~~~~La~aGv--g~i~lvD~D~ve~sNLnRQ~l~~~~diG~~Kv~~a~~~l~~inp~i~i~~~~~ 109 (245)
T PRK05690 33 ARVLVVGL-GGLGCAAAQYLAAAGV--GTLTLVDFDTVSLSNLQRQVLHDDATIGQPKVESAKAALARINPHIAIETINA 109 (245)
T ss_pred CCEEEECC-CHHHHHHHHHHHHCCC--CEEEEEECCCCCCCCHHHHHCCCHHHCCCCHHHHHHHHHHHHCCCCCEEEEHH
T ss_conf 97899877-7778999999998599--65999968867888678886459877898879999999997588752263331
Q ss_pred ECCHHH----HCCCCEEEECCCHHHHHHHHHHH-CCCCEEEEECCC
Q ss_conf 779436----31884786068758999999750-456517996145
Q gi|254780307|r 56 DVKSYD----FSDTDICLMSAGHAVSSQMSPKI-AANGCIVIDNSS 96 (335)
Q Consensus 56 ~~~~~~----~~~~Divf~a~p~~~s~~~~~~~-~~~g~~VIDlS~ 96 (335)
.+++++ ++++|+|+-|+.+-.++.+..++ .+.++.+|..|.
T Consensus 110 ~i~~~n~~~li~~~DlViD~~Dn~~~R~~ln~~c~~~~~P~v~g~~ 155 (245)
T PRK05690 110 RLDDDELAALIAAHDLVLDCTDNVATRNQLNAACFAAKKPLVSGAA 155 (245)
T ss_pred CCCHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHHHCCCCEEEEEE
T ss_conf 4488899887507888998789999999999999971998798778
No 208
>COG1042 Acyl-CoA synthetase (NDP forming) [Energy production and conversion]
Probab=92.00 E-value=0.37 Score=26.28 Aligned_cols=115 Identities=19% Similarity=0.295 Sum_probs=64.0
Q ss_pred EEEEECCCCH---HHHHHHHHHHHCCCCEEEEEEEECCCCCCEEEECCCCEEEEEECCHHH-HCCCCEEEECCCHHHHHH
Q ss_conf 7999816677---899999999744998078999974765875600278158998779436-318847860687589999
Q gi|254780307|r 4 KVAVVGATGN---VGREMLNIICERGFPISEVVALASERSAGTKVPFGKETIDVQDVKSYD-FSDTDICLMSAGHAVSSQ 79 (335)
Q Consensus 4 kvaIiGatG~---vG~el~~lL~~~~~p~~~l~~~~s~~~~G~~i~~~~~~~~~~~~~~~~-~~~~Divf~a~p~~~s~~ 79 (335)
.||++||++. +|.+.++.|.+.. ..++..+--... ...+ +..-. +..+ ....|+.|.++|...+.+
T Consensus 12 svavigas~~~~~vg~~i~~nL~~~g--~g~i~PVnp~~~-----~v~G--~~ay~-s~~~lp~~~dlav~~v~~~~~~~ 81 (598)
T COG1042 12 SIAVIGASERPGKLGYEILRNLLEYG--QGKIYPVNPKYD-----EVLG--VKAYT-SVADLPDAPDLAVIVVPAKVVPE 81 (598)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHCC--CCCEEECCCCCC-----CCCC--CCCCC-HHHHCCCCCCCEEEEECHHHHHH
T ss_conf 37887146875215799999998568--885574276532-----3366--31464-07557888770689852445689
Q ss_pred HHHHHCCCCEE-EEECCCCHHCCCCCCCCCCCHHHHHHCCCCC-CCEECCCCCC
Q ss_conf 99750456517-9961451001121112364101111103334-3121267643
Q gi|254780307|r 80 MSPKIAANGCI-VIDNSSAWRYDSDVPLIVPEVNPQTISLASR-KNIIANPNCS 131 (335)
Q Consensus 80 ~~~~~~~~g~~-VIDlS~~~R~~~d~p~~lPein~~~i~~~~~-~~~VanPgC~ 131 (335)
...++...|++ .|=.++-||--.. ...++.++..+.+++ ...+-.|||.
T Consensus 82 i~~~~~~kGv~~~i~is~gf~e~~~---~~~~~e~~~~~~a~~~~~rligPn~~ 132 (598)
T COG1042 82 IVHELGEKGVKGAIVISAGFREAGE---EGMELEKELVEAARKYGMRIIGPNCL 132 (598)
T ss_pred HHHHHCCCCCCEEEEECHHHHHHHH---HHHHHHHHHHHHHHHCCCEEECCCCC
T ss_conf 9987200587358996245678877---67677889999988559638623324
No 209
>PRK11150 rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Provisional
Probab=91.60 E-value=0.98 Score=23.71 Aligned_cols=30 Identities=17% Similarity=0.611 Sum_probs=22.6
Q ss_pred EEEECCCCHHHHHHHHHHHHCCCCEEEEEEEE
Q ss_conf 99981667789999999974499807899997
Q gi|254780307|r 5 VAVVGATGNVGREMLNIICERGFPISEVVALA 36 (335)
Q Consensus 5 vaIiGatG~vG~el~~lL~~~~~p~~~l~~~~ 36 (335)
|-|-|++|++|..|.+.|.+.+|. ++..+.
T Consensus 2 ILVTGgaGFIGS~l~~~L~~~G~~--~V~~~D 31 (308)
T PRK11150 2 IIVTGGAGFIGSNIVKALNDKGIT--DILVVD 31 (308)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCC--CEEEEE
T ss_conf 999405979999999999977998--099997
No 210
>KOG2741 consensus
Probab=91.58 E-value=0.28 Score=27.02 Aligned_cols=88 Identities=18% Similarity=0.286 Sum_probs=59.1
Q ss_pred CCEEEEEECCCCHHHHHHHHHHHHCCCC--EEEEEEEECCCCCCEEEECCCC----EEEE-EECCHHH-HCCCCEEEECC
Q ss_conf 9617999816677899999999744998--0789999747658756002781----5899-8779436-31884786068
Q gi|254780307|r 1 MTFKVAVVGATGNVGREMLNIICERGFP--ISEVVALASERSAGTKVPFGKE----TIDV-QDVKSYD-FSDTDICLMSA 72 (335)
Q Consensus 1 M~~kvaIiGatG~vG~el~~lL~~~~~p--~~~l~~~~s~~~~G~~i~~~~~----~~~~-~~~~~~~-~~~~Divf~a~ 72 (335)
+.+|.+|+|+ |..++++++-|..- | ...++++++. +--+.+.|..+ +.++ ...++.. -..+|+|....
T Consensus 5 ~~ir~Gi~g~-g~ia~~f~~al~~~--p~s~~~Ivava~~-s~~~A~~fAq~~~~~~~k~y~syEeLakd~~vDvVyi~~ 80 (351)
T KOG2741 5 ATIRWGIVGA-GRIARDFVRALHTL--PESNHQIVAVADP-SLERAKEFAQRHNIPNPKAYGSYEELAKDPEVDVVYIST 80 (351)
T ss_pred CEEEEEEEEH-HHHHHHHHHHHCCC--CCCCCEEEEEECC-CHHHHHHHHHHCCCCCCCCCCCHHHHHCCCCCCEEEECC
T ss_conf 6058988604-67789999972147--5458279999655-278899999865999874255799882498768799679
Q ss_pred CHHHHHHHHHHHCCCCEEEE
Q ss_conf 75899999975045651799
Q gi|254780307|r 73 GHAVSSQMSPKIAANGCIVI 92 (335)
Q Consensus 73 p~~~s~~~~~~~~~~g~~VI 92 (335)
|+-.-.+++-.+++.|+.|.
T Consensus 81 ~~~qH~evv~l~l~~~K~VL 100 (351)
T KOG2741 81 PNPQHYEVVMLALNKGKHVL 100 (351)
T ss_pred CCCCHHHHHHHHHHCCCCEE
T ss_conf 98008999999997599578
No 211
>pfam02423 OCD_Mu_crystall Ornithine cyclodeaminase/mu-crystallin family. This family contains the bacterial Ornithine cyclodeaminase enzyme EC:4.3.1.12, which catalyses the deamination of ornithine to proline. This family also contains mu-Crystallin the major component of the eye lens in several Australian marsupials, mRNA for this protein has also been found in human retina.
Probab=91.52 E-value=0.31 Score=26.73 Aligned_cols=20 Identities=35% Similarity=0.431 Sum_probs=12.5
Q ss_pred CCHHHHHHHHHHHHHHHHHHHC
Q ss_conf 1302236799999999988539
Q gi|254780307|r 314 NNLRKGAALNAVQIAELVAQEA 335 (335)
Q Consensus 314 DNL~kGAAg~AVq~anlm~~~~ 335 (335)
++. |-|.|=+-.+.+++++|
T Consensus 290 ~s~--G~a~~Dla~a~~vy~~A 309 (312)
T pfam02423 290 DST--GFAVEDVAAARLVYERA 309 (312)
T ss_pred ECC--CHHHHHHHHHHHHHHHH
T ss_conf 898--86999999999999986
No 212
>pfam02737 3HCDH_N 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain. This family also includes lambda crystallin.
Probab=91.46 E-value=0.62 Score=24.92 Aligned_cols=92 Identities=23% Similarity=0.339 Sum_probs=54.0
Q ss_pred EEEEECCCCHHHHHHHHHHHHCCCCEEEEEEEECCCCCC----EEEE----C---CC-----------CEEEEEECCHHH
Q ss_conf 799981667789999999974499807899997476587----5600----2---78-----------158998779436
Q gi|254780307|r 4 KVAVVGATGNVGREMLNIICERGFPISEVVALASERSAG----TKVP----F---GK-----------ETIDVQDVKSYD 61 (335)
Q Consensus 4 kvaIiGatG~vG~el~~lL~~~~~p~~~l~~~~s~~~~G----~~i~----~---~~-----------~~~~~~~~~~~~ 61 (335)
||+|+|+ |..|..+..++..++++ +..+..+...- +.+. . .+ ..+.+ ..+-.+
T Consensus 1 kV~ViGa-G~mG~~iA~~~a~~G~~---V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~-~~~l~~ 75 (180)
T pfam02737 1 KVAVIGA-GTMGAGIAQVFARAGLE---VVLVDISEEALEKARARIEKSLARLVEKGRLTEEDVDAVLARISF-TTDLAD 75 (180)
T ss_pred CEEEECC-CHHHHHHHHHHHHCCCE---EEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCC-CCCHHH
T ss_conf 9899997-88999999999967993---999979989999999999998999997256756769999852410-588999
Q ss_pred HCCCCEEEECCCHHHHHH--HHH---HHCCCCEEEEECCCCHHC
Q ss_conf 318847860687589999--997---504565179961451001
Q gi|254780307|r 62 FSDTDICLMSAGHAVSSQ--MSP---KIAANGCIVIDNSSAWRY 100 (335)
Q Consensus 62 ~~~~Divf~a~p~~~s~~--~~~---~~~~~g~~VIDlS~~~R~ 100 (335)
+.++|+|+-|.|-+...+ +.. .+...++.+-.++|.+..
T Consensus 76 ~~~adlViEav~E~l~iK~~l~~~l~~~~~~~~IlaSnTS~l~i 119 (180)
T pfam02737 76 AVDADLVIEAVPENLDLKRELFAELDAIAPPDAILASNTSSLSI 119 (180)
T ss_pred HCCCCEEEECCCCCHHHHHHHHHHHHHHCHHHEEEEECCCCCCH
T ss_conf 75899999925176889999999999743033088752676899
No 213
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=91.45 E-value=0.64 Score=24.84 Aligned_cols=43 Identities=28% Similarity=0.434 Sum_probs=32.8
Q ss_pred EEEEEECCCCHHHHHHHHHHHHCCCCEEEEEEE-ECCCCCCEEEEC
Q ss_conf 179998166778999999997449980789999-747658756002
Q gi|254780307|r 3 FKVAVVGATGNVGREMLNIICERGFPISEVVAL-ASERSAGTKVPF 47 (335)
Q Consensus 3 ~kvaIiGatG~vG~el~~lL~~~~~p~~~l~~~-~s~~~~G~~i~~ 47 (335)
|+|+|||+ |..|.-.--.|.+++ |..++..+ .+++..|..-.+
T Consensus 1 ~~i~IiG~-GiaGLsaAy~L~k~~-p~~~i~lfE~~~r~GG~l~T~ 44 (444)
T COG1232 1 MKIAIIGG-GIAGLSAAYRLQKAG-PDVEVTLFEADDRVGGLLRTV 44 (444)
T ss_pred CEEEEECC-CHHHHHHHHHHHHHC-CCCCEEEEECCCCCCCEEEEE
T ss_conf 93999878-288899999999858-998679983488778658998
No 214
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=91.44 E-value=1 Score=23.61 Aligned_cols=80 Identities=13% Similarity=0.184 Sum_probs=48.6
Q ss_pred EEEEEECCCCHHHHHHHHHHHHCCCCEEEEEEEECCCCCCEEEE-CCCCEEEEEECCHHHHCCCCEEEECCCHHHHHHHH
Q ss_conf 17999816677899999999744998078999974765875600-27815899877943631884786068758999999
Q gi|254780307|r 3 FKVAVVGATGNVGREMLNIICERGFPISEVVALASERSAGTKVP-FGKETIDVQDVKSYDFSDTDICLMSAGHAVSSQMS 81 (335)
Q Consensus 3 ~kvaIiGatG~vG~el~~lL~~~~~p~~~l~~~~s~~~~G~~i~-~~~~~~~~~~~~~~~~~~~Divf~a~p~~~s~~~~ 81 (335)
.+|-|+|+ |-|+.+=++.|.+.+ .. +..++ ++-. ..+. ...-.+.-...++.|+.++++||.|+.+..-.+.+
T Consensus 14 k~vLVvGG-G~VA~rK~~~Ll~~g-a~--VtVvs-p~~~-~el~~l~~i~~~~r~~~~~dl~~~~lViaATdd~~lN~~i 87 (157)
T PRK06719 14 KVVVIIGG-GKIAYRKASGLKDTG-AF--VTVVS-PEIC-EEMKELPYITWKQKTFSNDDIKDAHLIYAATNQHAVNMMV 87 (157)
T ss_pred CEEEEECC-CHHHHHHHHHHHHCC-CE--EEEEC-CCCC-HHHHHCCCEEEECCCCCHHHHCCCEEEEECCCCHHHHHHH
T ss_conf 87999889-899999999998787-96--99999-9868-9998455708870467846837843999868998999999
Q ss_pred HHHCCCC
Q ss_conf 7504565
Q gi|254780307|r 82 PKIAANG 88 (335)
Q Consensus 82 ~~~~~~g 88 (335)
.+..+..
T Consensus 88 ~~~a~~~ 94 (157)
T PRK06719 88 KQAAHDF 94 (157)
T ss_pred HHHHHHC
T ss_conf 9999778
No 215
>PRK07201 short chain dehydrogenase; Provisional
Probab=91.42 E-value=0.21 Score=27.78 Aligned_cols=36 Identities=31% Similarity=0.539 Sum_probs=28.4
Q ss_pred EEEEEECCCCHHHHHHHHHHHHCCCCEEEEEEEECCCC
Q ss_conf 17999816677899999999744998078999974765
Q gi|254780307|r 3 FKVAVVGATGNVGREMLNIICERGFPISEVVALASERS 40 (335)
Q Consensus 3 ~kvaIiGatG~vG~el~~lL~~~~~p~~~l~~~~s~~~ 40 (335)
||+.+-||||+.|..|++.|.++ +..++..+--.++
T Consensus 1 mnyflTGaTGFLG~~LL~~LL~~--~~a~V~cLVR~~s 36 (663)
T PRK07201 1 MRYFVTGGTGFIGRRLVSRLLDR--PGARVHVLVRRQS 36 (663)
T ss_pred CCEEECCCCCHHHHHHHHHHHHC--CCCEEEEEECCCC
T ss_conf 93654068428899999999848--9998999978774
No 216
>PRK07588 hypothetical protein; Provisional
Probab=91.01 E-value=0.56 Score=25.17 Aligned_cols=44 Identities=25% Similarity=0.392 Sum_probs=29.4
Q ss_pred EEEEEECCCCHHHHHHHHHHHHCCCCEEEEEEEECCCCCCEEEEC
Q ss_conf 179998166778999999997449980789999747658756002
Q gi|254780307|r 3 FKVAVVGATGNVGREMLNIICERGFPISEVVALASERSAGTKVPF 47 (335)
Q Consensus 3 ~kvaIiGatG~vG~el~~lL~~~~~p~~~l~~~~s~~~~G~~i~~ 47 (335)
|||+|+|| |..|.-+--.|.+++|...=+......+..|..|.+
T Consensus 1 mkVlIvGa-GiaGLalA~~L~r~G~~v~V~Er~~~~r~~G~~i~l 44 (391)
T PRK07588 1 MKIAISGA-GIAGATLAHWLQRTGHEPTLIERAPKLRTGGYMVDF 44 (391)
T ss_pred CEEEEECC-CHHHHHHHHHHHHCCCCEEEEECCCCCCCCCEEEEE
T ss_conf 97999993-289999999998689998999038988877338723
No 217
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=90.95 E-value=0.83 Score=24.15 Aligned_cols=88 Identities=28% Similarity=0.333 Sum_probs=53.2
Q ss_pred CCE---EEEEECCCCHHHHHHHHHHHHCCCCEEEEEEEECCCCCCEEEE-----CCCCEEEEEECCHHHHCCCCEEEECC
Q ss_conf 961---7999816677899999999744998078999974765875600-----27815899877943631884786068
Q gi|254780307|r 1 MTF---KVAVVGATGNVGREMLNIICERGFPISEVVALASERSAGTKVP-----FGKETIDVQDVKSYDFSDTDICLMSA 72 (335)
Q Consensus 1 M~~---kvaIiGatG~vG~el~~lL~~~~~p~~~l~~~~s~~~~G~~i~-----~~~~~~~~~~~~~~~~~~~Divf~a~ 72 (335)
|.+ ||.|+|. |-.|.-..+.|.++++ ++....+..+. ..+. +.+-....-..++..+.++|+++.+-
T Consensus 1 m~~~~k~v~viGl-G~sG~s~a~~L~~~G~---~v~~~D~~~~~-~~~~~~~~~~~~i~~~~g~~~~~~~~~~d~vV~SP 75 (445)
T PRK04308 1 MTFQNKKILVAGL-GGTGISMIAYLRKNGA---EVAAYDAELKA-ERVAQIGKMFDGLVFYTGRLKDALDNGFDILALSP 75 (445)
T ss_pred CCCCCCEEEEEEE-CHHHHHHHHHHHHCCC---EEEEEECCCCC-CHHHHHHHCCCCCEEEECCCHHHHCCCCCEEEECC
T ss_conf 9979998999998-9999999999997899---19999799995-31899974369968993786365015999999899
Q ss_pred CHHHHHHHHHHHCCCCEEEEE
Q ss_conf 758999999750456517996
Q gi|254780307|r 73 GHAVSSQMSPKIAANGCIVID 93 (335)
Q Consensus 73 p~~~s~~~~~~~~~~g~~VID 93 (335)
+=.........+.+.|+.|+.
T Consensus 76 gI~~~~p~l~~a~~~gi~i~~ 96 (445)
T PRK04308 76 GISERQPDIEAFKQNGGRVLG 96 (445)
T ss_pred CCCCCCHHHHHHHHCCCCEEC
T ss_conf 538999999999975995715
No 218
>PRK06847 hypothetical protein; Provisional
Probab=90.92 E-value=0.59 Score=25.03 Aligned_cols=25 Identities=28% Similarity=0.420 Sum_probs=22.0
Q ss_pred EEEEECCCCHHHHHHHHHHHHCCCCE
Q ss_conf 79998166778999999997449980
Q gi|254780307|r 4 KVAVVGATGNVGREMLNIICERGFPI 29 (335)
Q Consensus 4 kvaIiGatG~vG~el~~lL~~~~~p~ 29 (335)
||.|||| |.+|.-+-..|.+++++.
T Consensus 6 kV~IVGa-G~aGL~lA~~L~~~Gi~v 30 (375)
T PRK06847 6 KVLIVGG-GIGGMSAAIALRKAGISV 30 (375)
T ss_pred EEEEECC-CHHHHHHHHHHHHCCCCE
T ss_conf 7999996-689999999999679999
No 219
>PRK08328 hypothetical protein; Provisional
Probab=90.76 E-value=1.1 Score=23.43 Aligned_cols=107 Identities=19% Similarity=0.241 Sum_probs=62.5
Q ss_pred EEEEEECCCCHHHHHHHHHHHHCCCCEEEEEE-------------EECCCCCCEE-E--------ECCCCEEEEEE----
Q ss_conf 17999816677899999999744998078999-------------9747658756-0--------02781589987----
Q gi|254780307|r 3 FKVAVVGATGNVGREMLNIICERGFPISEVVA-------------LASERSAGTK-V--------PFGKETIDVQD---- 56 (335)
Q Consensus 3 ~kvaIiGatG~vG~el~~lL~~~~~p~~~l~~-------------~~s~~~~G~~-i--------~~~~~~~~~~~---- 56 (335)
-||.|+|+ |=+|......|...+.-.+.+.- +.+++..|+. - ..-..+..+..
T Consensus 28 s~VlvvG~-GGlGs~~~~~La~~GvG~i~lvD~D~ve~SNLnRQil~~~~diG~~~K~~~a~~~l~~iNp~v~i~~~~~~ 106 (230)
T PRK08328 28 AKVAVVGV-GGLGSPVAYYLAAAGVGTVLLIDEQTPELSNLNRQILHWEEDVGKNPKPISAKWKLERFNSDIKIETFVGR 106 (230)
T ss_pred CCEEEECC-CHHHHHHHHHHHHCCCCEEEEECCCEEECCCCHHHHHCCHHHHCCCCHHHHHHHHHHHHCCCEEEEHHHHH
T ss_conf 97899887-87899999999984898689874878751563255403087747710399999999975995057526644
Q ss_pred CCHHH----HCCCCEEEECCCHHHHHHHHHHHC-CCCEEEEECCCCHHCCCCCCCCCCCH
Q ss_conf 79436----318847860687589999997504-56517996145100112111236410
Q gi|254780307|r 57 VKSYD----FSDTDICLMSAGHAVSSQMSPKIA-ANGCIVIDNSSAWRYDSDVPLIVPEV 111 (335)
Q Consensus 57 ~~~~~----~~~~Divf~a~p~~~s~~~~~~~~-~~g~~VIDlS~~~R~~~d~p~~lPei 111 (335)
+++++ ++++|+|+-|+.+-.++.+..++. +.++.+|.-|. .+++-.+...+|.-
T Consensus 107 i~~~n~~~ll~~~DlViD~tDn~~tr~~ln~~c~~~~iPlI~g~v-~g~~Gqv~~~~p~~ 165 (230)
T PRK08328 107 LTEENIDEVLKGVDVIVDCLDNFETRYLLDDYAHKKGIPLVHGAV-EGMYGQVTTIVPGK 165 (230)
T ss_pred HHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCCCCEEEEEE-ECCEEEEEEEECCC
T ss_conf 237779862005989999889989999999999983997799996-61799999980899
No 220
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=90.66 E-value=0.39 Score=26.17 Aligned_cols=89 Identities=18% Similarity=0.350 Sum_probs=49.2
Q ss_pred CCE-EEEEECCCCHHHHHHHHHHHHCCCCEEEEEEEECCCC------CCEEEECCCCEE-----------EEEECCHHHH
Q ss_conf 961-7999816677899999999744998078999974765------875600278158-----------9987794363
Q gi|254780307|r 1 MTF-KVAVVGATGNVGREMLNIICERGFPISEVVALASERS------AGTKVPFGKETI-----------DVQDVKSYDF 62 (335)
Q Consensus 1 M~~-kvaIiGatG~vG~el~~lL~~~~~p~~~l~~~~s~~~------~G~~i~~~~~~~-----------~~~~~~~~~~ 62 (335)
|+| ||+|+|. ||||.-+--.|++++|. +..+.-... .|+ +++....+ .+...+ +.
T Consensus 1 m~~kkI~ViGl-GYVGL~~a~~lA~~G~~---Vig~D~d~~kv~~l~~g~-~p~~Ep~l~~ll~~~~~~~~l~~t~--~~ 73 (415)
T PRK11064 1 MSFETISVIGL-GYIGLPTAAAFASRQKQ---VIGVDINQHAVDTINRGE-IHIVEPDLDMVVKAAVEGGYLRATT--TP 73 (415)
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHHCCCC---EEEEECCHHHHHHHHCCC-CCCCCCCHHHHHHHHHHCCCCEEEC--CH
T ss_conf 99887999886-87789999999968894---899989999999997868-9988989899999998659836525--74
Q ss_pred CCCCEEEECCCHH--------------HHHHHHHHHCCCCEEEEECCCC
Q ss_conf 1884786068758--------------9999997504565179961451
Q gi|254780307|r 63 SDTDICLMSAGHA--------------VSSQMSPKIAANGCIVIDNSSA 97 (335)
Q Consensus 63 ~~~Divf~a~p~~--------------~s~~~~~~~~~~g~~VIDlS~~ 97 (335)
..+|++|.|.|.- +.+.+.+ ..+.|..||=-|.-
T Consensus 74 ~~ad~iiI~V~TP~~~~~~~Dls~i~~a~~~I~~-~l~~~~lVIi~STV 121 (415)
T PRK11064 74 VPADAFLIAVPTPFKGDHEPDLSYVEAAAKSIAP-VLKKGDLVILESTS 121 (415)
T ss_pred HHCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHH-HCCCCCEEEECCCC
T ss_conf 6789999988999789997202018889999997-52688679963789
No 221
>PRK06753 hypothetical protein; Provisional
Probab=90.62 E-value=0.51 Score=25.46 Aligned_cols=27 Identities=30% Similarity=0.571 Sum_probs=23.2
Q ss_pred EEEEEECCCCHHHHHHHHHHHHCCCCEE
Q ss_conf 1799981667789999999974499807
Q gi|254780307|r 3 FKVAVVGATGNVGREMLNIICERGFPIS 30 (335)
Q Consensus 3 ~kvaIiGatG~vG~el~~lL~~~~~p~~ 30 (335)
|||+|||| |.+|.-+-..|.+++++..
T Consensus 1 mkV~IVGa-GiaGL~~A~~L~~~G~~v~ 27 (373)
T PRK06753 1 MKIAIIGA-GIGGLTAAALLQEQGHTVK 27 (373)
T ss_pred CEEEEECC-CHHHHHHHHHHHHCCCCEE
T ss_conf 98999994-5899999999997799999
No 222
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=90.49 E-value=0.6 Score=25.00 Aligned_cols=92 Identities=14% Similarity=0.268 Sum_probs=56.5
Q ss_pred EEEEECCCCHHHHHHHHHHHHCCCCEEEEEEEECCC-CC-----------CEEEEC----CCCEEEEEECCHHHHCCCCE
Q ss_conf 799981667789999999974499807899997476-58-----------756002----78158998779436318847
Q gi|254780307|r 4 KVAVVGATGNVGREMLNIICERGFPISEVVALASER-SA-----------GTKVPF----GKETIDVQDVKSYDFSDTDI 67 (335)
Q Consensus 4 kvaIiGatG~vG~el~~lL~~~~~p~~~l~~~~s~~-~~-----------G~~i~~----~~~~~~~~~~~~~~~~~~Di 67 (335)
||+|+|| |..|..+..++..+++++. .+..+. .. |+..+- ....+.+. .+-+.++++|+
T Consensus 7 ~VaViGA-G~MG~gIA~~~a~~G~~V~---l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~i~~~-~~l~a~~~aDl 81 (310)
T PRK06130 7 NLAIIGA-GAMGSGIAALFASKGLDVV---LIDPMPGALERAAQVIERQLGVYAPGAIAGTLQRIRMD-AGLEAACGADL 81 (310)
T ss_pred EEEEECC-CHHHHHHHHHHHHCCCCEE---EEECCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHEEEC-CCHHHHCCCCE
T ss_conf 8989787-7999999999985899889---99799999999999999986532766699987410213-78889668999
Q ss_pred EEECCCHHHHHH--HH---HHHCCCCEEEEECCCCHHC
Q ss_conf 860687589999--99---7504565179961451001
Q gi|254780307|r 68 CLMSAGHAVSSQ--MS---PKIAANGCIVIDNSSAWRY 100 (335)
Q Consensus 68 vf~a~p~~~s~~--~~---~~~~~~g~~VIDlS~~~R~ 100 (335)
|+-|.|-....+ +. .++...++++-+++|.+..
T Consensus 82 ViEav~E~l~iK~~lf~~le~~~~~~~IlASNTSsl~i 119 (310)
T PRK06130 82 VIEAVPEKLDLKRDIFARLDTLCDPQTIFATNTSGLSI 119 (310)
T ss_pred EEECCCCCHHHHHHHHHHHHCCCCCCCEEEECCCCCCC
T ss_conf 99888177899999999986068988389964887760
No 223
>KOG0685 consensus
Probab=90.30 E-value=1.3 Score=22.96 Aligned_cols=45 Identities=31% Similarity=0.511 Sum_probs=32.2
Q ss_pred EEEEECCCCHHHHHHHHHHHHCCCCEEEEEEEECCCCCCE--EEECCCC
Q ss_conf 7999816677899999999744998078999974765875--6002781
Q gi|254780307|r 4 KVAVVGATGNVGREMLNIICERGFPISEVVALASERSAGT--KVPFGKE 50 (335)
Q Consensus 4 kvaIiGatG~vG~el~~lL~~~~~p~~~l~~~~s~~~~G~--~i~~~~~ 50 (335)
||+|||| |+.|..--+.|.+.+++.+.+ +=++++-.|+ .++|.+.
T Consensus 23 kIvIIGA-G~AGLaAA~rLle~gf~~~~I-lEa~dRIGGRI~ti~~~d~ 69 (498)
T KOG0685 23 KIVIIGA-GIAGLAAATRLLENGFIDVLI-LEASDRIGGRIHTIPFADG 69 (498)
T ss_pred EEEEECC-CHHHHHHHHHHHHHCCCEEEE-EEECCCCCCEEEEEECCCC
T ss_conf 4999898-567799999999828964899-9704666755766872787
No 224
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=90.25 E-value=0.52 Score=25.37 Aligned_cols=93 Identities=17% Similarity=0.358 Sum_probs=56.1
Q ss_pred EEEEECCCCHHHHHHHHHHHHCCCCEEEEEEEECCCCC---CE-EE----E----CC---C-------CEEEEEECCHHH
Q ss_conf 79998166778999999997449980789999747658---75-60----0----27---8-------158998779436
Q gi|254780307|r 4 KVAVVGATGNVGREMLNIICERGFPISEVVALASERSA---GT-KV----P----FG---K-------ETIDVQDVKSYD 61 (335)
Q Consensus 4 kvaIiGatG~vG~el~~lL~~~~~p~~~l~~~~s~~~~---G~-~i----~----~~---~-------~~~~~~~~~~~~ 61 (335)
||+|+|| |..|..+-.++..++++ +.++..+..+ ++ .+ . .+ . ..+.+ ..+-.+
T Consensus 4 kV~ViGa-G~mG~~IA~~~a~~G~~---V~l~D~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~-~~dl~~ 78 (284)
T PRK07819 4 RVGVVGA-GQMGSGIAEVCARAGVD---VLVFETTEEAATAGRNRIEKSLERAVSAGKLTERERDAALARLTF-TTDLED 78 (284)
T ss_pred EEEEECC-CHHHHHHHHHHHHCCCE---EEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCC-CCCHHH
T ss_conf 7999897-78999999999957990---899979889999999999999999987278987999999963706-689999
Q ss_pred HCCCCEEEECCCHHHHHH--HHHHH---C-CCCEEEEECCCCHHCC
Q ss_conf 318847860687589999--99750---4-5651799614510011
Q gi|254780307|r 62 FSDTDICLMSAGHAVSSQ--MSPKI---A-ANGCIVIDNSSAWRYD 101 (335)
Q Consensus 62 ~~~~Divf~a~p~~~s~~--~~~~~---~-~~g~~VIDlS~~~R~~ 101 (335)
++++|+|+-|.|-+...+ +..++ . +.++++-+++|.+...
T Consensus 79 ~~~adlViEav~E~l~~K~~l~~~ld~~~~~p~~IlaSNTS~l~is 124 (284)
T PRK07819 79 LADRQLVIEAVVEDEAVKTEIFAELDKVVTDPDAVLASNTSSIPIM 124 (284)
T ss_pred HCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCH
T ss_conf 7659999990738788889999999974289985999658887613
No 225
>pfam04321 RmlD_sub_bind RmlD substrate binding domain. L-rhamnose is a saccharide required for the virulence of some bacteria. Its precursor, dTDP-L-rhamnose, is synthesized by four different enzymes the final one of which is RmlD. The RmlD substrate binding domain is responsible for binding a sugar nucleotide.
Probab=90.00 E-value=0.45 Score=25.75 Aligned_cols=81 Identities=30% Similarity=0.495 Sum_probs=44.2
Q ss_pred EEEECCCCHHHHHHHHHHHHCCCCEEEEEEEECCCCCCEEEECCCCEEEEEECCHH--HHC--CCCEEEECCC-------
Q ss_conf 99981667789999999974499807899997476587560027815899877943--631--8847860687-------
Q gi|254780307|r 5 VAVVGATGNVGREMLNIICERGFPISEVVALASERSAGTKVPFGKETIDVQDVKSY--DFS--DTDICLMSAG------- 73 (335)
Q Consensus 5 vaIiGatG~vG~el~~lL~~~~~p~~~l~~~~s~~~~G~~i~~~~~~~~~~~~~~~--~~~--~~Divf~a~p------- 73 (335)
|-|.|++|++|+.|.+.|.+.+| ++..++..+ ..+.+.+.. -+. +.|+||-++.
T Consensus 1 ILVtG~~GfiGs~l~~~L~~~g~---~v~~~~r~~------------~D~~d~~~l~~~~~~~~pd~VihlAa~~~~~~~ 65 (284)
T pfam04321 1 ILVTGANGQLGRELTRLLAERGV---EVVALDRPE------------LDLTDPEAVAALVREARPDVVVNAAAYTAVDKA 65 (284)
T ss_pred EEEECCCCHHHHHHHHHHHHCCC---EEEEECCCC------------CCCCCHHHHHHHHHHCCCCEEEECCCCCCCHHH
T ss_conf 69964899899999999986899---899954862------------578899999999986499799972413555677
Q ss_pred -----------HHHHHHHHHHHCCCCEEEEECCCCHHC
Q ss_conf -----------589999997504565179961451001
Q gi|254780307|r 74 -----------HAVSSQMSPKIAANGCIVIDNSSAWRY 100 (335)
Q Consensus 74 -----------~~~s~~~~~~~~~~g~~VIDlS~~~R~ 100 (335)
-..+..++..+.+.+.++|=+|++.=+
T Consensus 66 ~~~~~~~~~~Nv~~t~~l~~~~~~~~~~~i~~Ss~~Vy 103 (284)
T pfam04321 66 ESEPELAYAVNALGPGNLAEACAARGAPLIHISTDYVF 103 (284)
T ss_pred HHCHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCC
T ss_conf 74888899875999999999987449857984175300
No 226
>KOG1429 consensus
Probab=89.96 E-value=0.61 Score=24.95 Aligned_cols=30 Identities=13% Similarity=0.521 Sum_probs=24.6
Q ss_pred EEEEEECCCCHHHHHHHHHHHHCCCCEEEE
Q ss_conf 179998166778999999997449980789
Q gi|254780307|r 3 FKVAVVGATGNVGREMLNIICERGFPISEV 32 (335)
Q Consensus 3 ~kvaIiGatG~vG~el~~lL~~~~~p~~~l 32 (335)
+||.|.|+.|++|..|.+.|..+.|.++-+
T Consensus 28 lrI~itGgaGFIgSHLvdkLm~egh~Via~ 57 (350)
T KOG1429 28 LRILITGGAGFIGSHLVDKLMTEGHEVIAL 57 (350)
T ss_pred EEEEEECCCCHHHHHHHHHHHHCCCEEEEE
T ss_conf 079996574058899999997468779998
No 227
>PRK09897 hypothetical protein; Provisional
Probab=89.94 E-value=0.63 Score=24.90 Aligned_cols=45 Identities=27% Similarity=0.441 Sum_probs=33.4
Q ss_pred CCEEEEEECCCCHHHHHHHHHHHHCCCCEEEEEEEECCCCCCEEEECC
Q ss_conf 961799981667789999999974499807899997476587560027
Q gi|254780307|r 1 MTFKVAVVGATGNVGREMLNIICERGFPISEVVALASERSAGTKVPFG 48 (335)
Q Consensus 1 M~~kvaIiGatG~vG~el~~lL~~~~~p~~~l~~~~s~~~~G~~i~~~ 48 (335)
|+ ||||||+ |=+|.=.+..|.+++ .-+++..+-...++|.-.++.
T Consensus 1 mk-rIAivG~-GPtgiYt~~~Ll~~~-~~~~I~ifE~~~~aG~GMPYs 45 (535)
T PRK09897 1 MK-KIAIVGA-GPTGIYTLFSLLQQQ-TPLSISIFEQADEAGVGMPYS 45 (535)
T ss_pred CC-EEEEECC-CCCHHHHHHHHHCCC-CCCEEEEEECCCCCCCCCCCC
T ss_conf 95-0799667-862499999986469-982699982156677899868
No 228
>PRK08268 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=89.49 E-value=0.85 Score=24.08 Aligned_cols=92 Identities=18% Similarity=0.321 Sum_probs=56.9
Q ss_pred EEEEECCCCHHHHHHHHHHHHCCCCEEEEEEEECCCCC---C-EEEE-------CCC-----------CEEEEEECCHHH
Q ss_conf 79998166778999999997449980789999747658---7-5600-------278-----------158998779436
Q gi|254780307|r 4 KVAVVGATGNVGREMLNIICERGFPISEVVALASERSA---G-TKVP-------FGK-----------ETIDVQDVKSYD 61 (335)
Q Consensus 4 kvaIiGatG~vG~el~~lL~~~~~p~~~l~~~~s~~~~---G-~~i~-------~~~-----------~~~~~~~~~~~~ 61 (335)
||+|+|+ |..|.-+-+.+..++|++. ++..+... + +.+. ..+ ..+... .+-.+
T Consensus 5 ~VaViGa-GtMG~gIA~~~a~aG~~V~---l~D~~~~~l~~a~~~i~~~l~~~~~~g~~~~~~~~~~~~ri~~~-~~l~~ 79 (503)
T PRK08268 5 TVAVIGA-GAMGAGIAQVAAQAGHTVL---LYDARAGAAAAARDGIAATLAKLVEKGKLTAEQAEAALARLRPV-EALAD 79 (503)
T ss_pred EEEEECC-CHHHHHHHHHHHHCCCEEE---EEECCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCEEE-CCHHH
T ss_conf 8999796-8899999999993899089---99799899999999999999999976999988999998474741-77889
Q ss_pred HCCCCEEEECCCHHHHHH--HH---HHHCCCCEEEEECCCCHHC
Q ss_conf 318847860687589999--99---7504565179961451001
Q gi|254780307|r 62 FSDTDICLMSAGHAVSSQ--MS---PKIAANGCIVIDNSSAWRY 100 (335)
Q Consensus 62 ~~~~Divf~a~p~~~s~~--~~---~~~~~~g~~VIDlS~~~R~ 100 (335)
++++|+|+.|.|-+...+ +. ..+...++++-+++|.+-.
T Consensus 80 l~~aDlVIEAV~E~l~~K~~vf~~l~~~~~~~~IlASNTSsL~i 123 (503)
T PRK08268 80 LADCDLVVEAIVERLDVKQALFAQLEAIVSDDCILATNTSSLSI 123 (503)
T ss_pred HCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCCH
T ss_conf 75799999936067899999999998547988579841776779
No 229
>PRK12464 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional
Probab=89.38 E-value=0.85 Score=24.10 Aligned_cols=35 Identities=26% Similarity=0.500 Sum_probs=27.1
Q ss_pred EECCCCHHHHHHHHHHHHCCCCEEEEEEEECCCCCC
Q ss_conf 981667789999999974499807899997476587
Q gi|254780307|r 7 VVGATGNVGREMLNIICERGFPISEVVALASERSAG 42 (335)
Q Consensus 7 IiGatG~vG~el~~lL~~~~~p~~~l~~~~s~~~~G 42 (335)
|+|+||-+|+.-++++.++. ..+++..++..++.-
T Consensus 1 ILGSTGSIG~~tL~Vi~~~~-~~f~V~~Lsa~~n~~ 35 (392)
T PRK12464 1 ILGSTGSIGTSTLDVVAAHP-ERFKVVALTANYNIE 35 (392)
T ss_pred CCCCCCHHHHHHHHHHHHCC-CCEEEEEEEECCCHH
T ss_conf 95957598999999999486-870899999388799
No 230
>KOG2733 consensus
Probab=89.19 E-value=0.83 Score=24.15 Aligned_cols=138 Identities=14% Similarity=0.145 Sum_probs=72.1
Q ss_pred EEEEEECCCCHHHHHHHHHHHH-CCCCEEEEEEEECCCC-CCEEEE---------CCCCEEEEEECC-HHH----HCCCC
Q ss_conf 1799981667789999999974-4998078999974765-875600---------278158998779-436----31884
Q gi|254780307|r 3 FKVAVVGATGNVGREMLNIICE-RGFPISEVVALASERS-AGTKVP---------FGKETIDVQDVK-SYD----FSDTD 66 (335)
Q Consensus 3 ~kvaIiGatG~vG~el~~lL~~-~~~p~~~l~~~~s~~~-~G~~i~---------~~~~~~~~~~~~-~~~----~~~~D 66 (335)
+.+-|.||||++|+-.++.+.+ ..++...+...+-++. -++.+. .....+.+-|.. +.+ .+.+.
T Consensus 6 yDvVIyGASGfTG~yivee~v~~~~~~~~slavAGRn~~KL~~vL~~~~~k~~~~ls~~~i~i~D~~n~~Sl~emak~~~ 85 (423)
T KOG2733 6 YDVVIYGASGFTGKYIVEEAVSSQVFEGLSLAVAGRNEKKLQEVLEKVGEKTGTDLSSSVILIADSANEASLDEMAKQAR 85 (423)
T ss_pred EEEEEECCCCCCCEEEHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHHHHHHHHE
T ss_conf 35999815666530248988643024675478732788899999999863248886654389943788789999986417
Q ss_pred EEEECCCHHH--HHHHHHHHCCCCEEEEECCCCHHCCCCCCCCCCCHHHHHHCCCCCCC--EECCCCCCCCCCCCCCCHH
Q ss_conf 7860687589--99999750456517996145100112111236410111110333431--2126764322211122001
Q gi|254780307|r 67 ICLMSAGHAV--SSQMSPKIAANGCIVIDNSSAWRYDSDVPLIVPEVNPQTISLASRKN--IIANPNCSTIQLVVALKPL 142 (335)
Q Consensus 67 ivf~a~p~~~--s~~~~~~~~~~g~~VIDlS~~~R~~~d~p~~lPein~~~i~~~~~~~--~VanPgC~at~~~l~L~PL 142 (335)
++.-|.+.-- ...+++...++|+.-||.|+- |.+- -.=+.+-++ .+++++ +|+.-|---++.-+.+.=+
T Consensus 86 vivN~vGPyR~hGE~VVkacienG~~~vDISGE----P~f~-E~mq~kYhd--~A~ekGVYIVsaCGfDSIPaDlGv~f~ 158 (423)
T KOG2733 86 VIVNCVGPYRFHGEPVVKACIENGTHHVDISGE----PQFM-ERMQLKYHD--LAKEKGVYIVSACGFDSIPADLGVMFL 158 (423)
T ss_pred EEEECCCCCEECCCHHHHHHHHCCCCEECCCCC----HHHH-HHHHHHHHH--HHHHCCEEEEEECCCCCCCCCCEEEEE
T ss_conf 877515563124718999998759853314788----7999-999887877--777557399950466777751001443
Q ss_pred HHCCC
Q ss_conf 10178
Q gi|254780307|r 143 HDLAM 147 (335)
Q Consensus 143 ~~~~~ 147 (335)
.+++.
T Consensus 159 ~k~fd 163 (423)
T KOG2733 159 RKNFD 163 (423)
T ss_pred HHHCC
T ss_conf 63325
No 231
>pfam02882 THF_DHG_CYH_C Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain.
Probab=89.17 E-value=1.3 Score=22.97 Aligned_cols=75 Identities=20% Similarity=0.314 Sum_probs=48.8
Q ss_pred EEEEEECCCCHHHHHHHHHHHHCCCCEEEEEEEECCCCCCEEEECCCCEEEEEECCHHHHCCCCEEEECCCHHHHHHHHH
Q ss_conf 17999816677899999999744998078999974765875600278158998779436318847860687589999997
Q gi|254780307|r 3 FKVAVVGATGNVGREMLNIICERGFPISEVVALASERSAGTKVPFGKETIDVQDVKSYDFSDTDICLMSAGHAVSSQMSP 82 (335)
Q Consensus 3 ~kvaIiGatG~vG~el~~lL~~~~~p~~~l~~~~s~~~~G~~i~~~~~~~~~~~~~~~~~~~~Divf~a~p~~~s~~~~~ 82 (335)
.++.|+|.|..||+-|..+|.+++ ..+....|.. .++ ......+|+++.|.+.-- -+-+
T Consensus 37 k~vvViGrS~iVG~Pla~lL~~~~---atVtichs~T---------------~nl-~~~~~~ADIvI~A~G~p~--~i~~ 95 (159)
T pfam02882 37 KNVVVIGRSNIVGKPLALLLLNAN---ATVTVCHSKT---------------KDL-AEITREADIVVVAVGKPG--LIKA 95 (159)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCC---CEEEEECCCC---------------CCH-HHHHHCCCEEEEECCCCC--CCCH
T ss_conf 669998887314899999998779---9899981899---------------997-896300344423158855--0569
Q ss_pred HHCCCCEEEEECCCCH
Q ss_conf 5045651799614510
Q gi|254780307|r 83 KIAANGCIVIDNSSAW 98 (335)
Q Consensus 83 ~~~~~g~~VIDlS~~~ 98 (335)
...+.|..|||..-.+
T Consensus 96 ~~ik~gavvIDvGi~~ 111 (159)
T pfam02882 96 DWVKPGAVVIDVGINR 111 (159)
T ss_pred HHCCCCCEEEEECCCC
T ss_conf 8858998899802206
No 232
>KOG2013 consensus
Probab=89.03 E-value=0.33 Score=26.60 Aligned_cols=93 Identities=20% Similarity=0.385 Sum_probs=57.5
Q ss_pred EEEEEECCCCHHHHHHHHHHHHCCCCEEEEEEEECC-------------CCCCEEE---------ECCCC-EEE-----E
Q ss_conf 179998166778999999997449980789999747-------------6587560---------02781-589-----9
Q gi|254780307|r 3 FKVAVVGATGNVGREMLNIICERGFPISEVVALASE-------------RSAGTKV---------PFGKE-TID-----V 54 (335)
Q Consensus 3 ~kvaIiGatG~vG~el~~lL~~~~~p~~~l~~~~s~-------------~~~G~~i---------~~~~~-~~~-----~ 54 (335)
-||-+||| |-+|-||++.|...+|..+.|.-+.+- +..|++- .|+-+ ++. +
T Consensus 13 ~riLvVGa-GGIGCELLKnLal~gf~~IhiIDlDTIDlSNLNRQFLFrkkhVgqsKA~vA~~~v~~Fnpn~~l~~yhanI 91 (603)
T KOG2013 13 GRILVVGA-GGIGCELLKNLALTGFEEIHIIDLDTIDLSNLNRQFLFRKKHVGQSKATVAAKAVKQFNPNIKLVPYHANI 91 (603)
T ss_pred CEEEEEEC-CCCCHHHHHHHHHHCCCEEEEEECCCEECCCHHHHHEEEHHHCCCHHHHHHHHHHHHHCCCCCEEECCCCC
T ss_conf 71899905-73219999999982677057973253202101245502041227618899999999749777468511334
Q ss_pred EEC-CHHH-HCCCCEEEECCCHHHHHHHHHHH-CCCCEEEEECCC
Q ss_conf 877-9436-31884786068758999999750-456517996145
Q gi|254780307|r 55 QDV-KSYD-FSDTDICLMSAGHAVSSQMSPKI-AANGCIVIDNSS 96 (335)
Q Consensus 55 ~~~-~~~~-~~~~Divf~a~p~~~s~~~~~~~-~~~g~~VIDlS~ 96 (335)
.+. .+.. |...|+||.||.+-.++.|+.+. ..+....||-..
T Consensus 92 ~e~~fnv~ff~qfdiV~NaLDNlaAR~yVNr~C~~a~vPLIesGt 136 (603)
T KOG2013 92 KEPKFNVEFFRQFDIVLNALDNLAARRYVNRMCLAASVPLIESGT 136 (603)
T ss_pred CCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCEECCC
T ss_conf 685327899999999998522398998988888760687230576
No 233
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=88.80 E-value=1.6 Score=22.37 Aligned_cols=43 Identities=19% Similarity=0.162 Sum_probs=27.6
Q ss_pred CCEEEEEECCCCHHHHHHHHHHHHC---CCCEEEEEEE-ECCCCCCEEE
Q ss_conf 9617999816677899999999744---9980789999-7476587560
Q gi|254780307|r 1 MTFKVAVVGATGNVGREMLNIICER---GFPISEVVAL-ASERSAGTKV 45 (335)
Q Consensus 1 M~~kvaIiGatG~vG~el~~lL~~~---~~p~~~l~~~-~s~~~~G~~i 45 (335)
|| +|+|||+ |..|.-.---|.+. ..+.+++..+ ++++-.|+--
T Consensus 1 Mk-~vaVIGg-GISGLsaA~~L~~~~~~~~~~~~vtl~Eas~r~GG~I~ 47 (466)
T PRK12416 1 MK-TVVVIGG-GITGLSTMFYLEKLKKDYNIDLNLILVEKEEYLGGKIH 47 (466)
T ss_pred CC-EEEEECC-CHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCEEE
T ss_conf 97-5999899-78999999999872555589986799977998867798
No 234
>KOG1198 consensus
Probab=88.73 E-value=1.1 Score=23.52 Aligned_cols=93 Identities=22% Similarity=0.222 Sum_probs=41.2
Q ss_pred EEEEEECCCCHHHHHHHHHHHHCCCCEEEEEEEECCCCCCEEEECCCCEEEE--EE------CCHHHHCCCCEEEECCCH
Q ss_conf 1799981667789999999974499807899997476587560027815899--87------794363188478606875
Q gi|254780307|r 3 FKVAVVGATGNVGREMLNIICERGFPISEVVALASERSAGTKVPFGKETIDV--QD------VKSYDFSDTDICLMSAGH 74 (335)
Q Consensus 3 ~kvaIiGatG~vG~el~~lL~~~~~p~~~l~~~~s~~~~G~~i~~~~~~~~~--~~------~~~~~~~~~Divf~a~p~ 74 (335)
.+|-|+|++|-||+..+|+....+ ...+...+|.++- +.+...+.+..+ .+ +.+....++|+||=|.++
T Consensus 159 ~~vLv~ggsggVG~~aiQlAk~~~--~~~v~t~~s~e~~-~l~k~lGAd~vvdy~~~~~~e~~kk~~~~~~DvVlD~vg~ 235 (347)
T KOG1198 159 KSVLVLGGSGGVGTAAIQLAKHAG--AIKVVTACSKEKL-ELVKKLGADEVVDYKDENVVELIKKYTGKGVDVVLDCVGG 235 (347)
T ss_pred CEEEEEECCCHHHHHHHHHHHHCC--CCEEEEEECCCCH-HHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCC
T ss_conf 869999387489999999998749--7479998155416-8999729965124885779999876227885099988889
Q ss_pred HHHHHHHHHHCCCC-EEEEECCCCH
Q ss_conf 89999997504565-1799614510
Q gi|254780307|r 75 AVSSQMSPKIAANG-CIVIDNSSAW 98 (335)
Q Consensus 75 ~~s~~~~~~~~~~g-~~VIDlS~~~ 98 (335)
.....-...+...| ..+|-+.++.
T Consensus 236 ~~~~~~~~~l~~~g~~~~i~~~~~~ 260 (347)
T KOG1198 236 STLTKSLSCLLKGGGGAYIGLVGDE 260 (347)
T ss_pred CCCHHHHHHHCCCCCCEEEEECCCC
T ss_conf 7324323433237872699943776
No 235
>pfam02558 ApbA Ketopantoate reductase PanE/ApbA. This is a family of 2-dehydropantoate 2-reductases also known as ketopantoate reductases, EC:1.1.1.169. The reaction catalysed by this enzyme is: (R)-pantoate + NADP(+) <= 2-dehydropantoate + NADPH. AbpA catalyses the NADPH reduction of ketopantoic acid to pantoic acid in the alternative pyrimidine biosynthetic (APB) pathway. ApbA and PanE are allelic. ApbA, the ketopantoate reductase enzyme is required for the synthesis of thiamine via the APB biosynthetic pathway.
Probab=88.71 E-value=1.7 Score=22.23 Aligned_cols=88 Identities=17% Similarity=0.271 Sum_probs=50.4
Q ss_pred EEEECCCCHHHHHHHHHHHHCCCCEEEEEEEECCC------CCCEEEECCCCEEEEEE---C-CHHHHCCCCEEEECCCH
Q ss_conf 99981667789999999974499807899997476------58756002781589987---7-94363188478606875
Q gi|254780307|r 5 VAVVGATGNVGREMLNIICERGFPISEVVALASER------SAGTKVPFGKETIDVQD---V-KSYDFSDTDICLMSAGH 74 (335)
Q Consensus 5 vaIiGatG~vG~el~~lL~~~~~p~~~l~~~~s~~------~~G~~i~~~~~~~~~~~---~-~~~~~~~~Divf~a~p~ 74 (335)
|+|+|+ |-+|.-+--.|.+.++ ++.+++..+ ..|-.+.....+..+.. . +.......|++|+|+.+
T Consensus 1 I~IiGa-GaiG~~~a~~L~~ag~---~V~lv~R~~~~~~i~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~D~viv~vKa 76 (150)
T pfam02558 1 IAILGA-GAVGSLYGARLARAGH---DVTLIARGRHLEAIRENGLRITSPGGERTVPPPVATSASEELGPADLVIVAVKA 76 (150)
T ss_pred CEEECC-CHHHHHHHHHHHHCCC---EEEEEECCCHHHHHHHCCEEEEECCCCEEEECCEECCCHHHCCCCCEEEEEECC
T ss_conf 999966-8999999999997799---289997563678877497699947983898074103865765886799997224
Q ss_pred HHHHHHHHHH---CCCCEEEEECCC
Q ss_conf 8999999750---456517996145
Q gi|254780307|r 75 AVSSQMSPKI---AANGCIVIDNSS 96 (335)
Q Consensus 75 ~~s~~~~~~~---~~~g~~VIDlS~ 96 (335)
-...+..+.+ ...+..|+-+-.
T Consensus 77 ~~~~~al~~l~~~l~~~t~iv~lqN 101 (150)
T pfam02558 77 YQTAEALEDLAPLLGPNTVVLLLQN 101 (150)
T ss_pred CCHHHHHHHHHHHCCCCCEEEEEEC
T ss_conf 5889999998865288838999425
No 236
>PRK08291 ornithine cyclodeaminase; Validated
Probab=88.61 E-value=0.79 Score=24.29 Aligned_cols=19 Identities=21% Similarity=0.343 Sum_probs=13.2
Q ss_pred CCCCCCCCCEEEEEEECCE
Q ss_conf 3432211200112110215
Q gi|254780307|r 225 PNIKVSCTAARVPVFIGHA 243 (335)
Q Consensus 225 ~~~~v~~t~~~vPv~rG~~ 243 (335)
.++-++.|+..-|++++-+
T Consensus 198 aDIIvtaT~s~~Pv~~~~~ 216 (330)
T PRK08291 198 ADIVVTTTPSEEPILKAEW 216 (330)
T ss_pred CCEEEEEECCCCCCCCHHH
T ss_conf 8889997689995015100
No 237
>TIGR00243 Dxr 1-deoxy-D-xylulose 5-phosphate reductoisomerase; InterPro: IPR003821 1-deoxy-D-xylulose 5-phosphate reductoisomerase synthesizes 2-C-methyl-D-erythritol 4-phosphate from 1-deoxy-D-xylulose 5-phosphate in a single step by intramolecular rearrangement and reduction and is responsible for terpenoid biosynthesis in some organisms . In Arabidopsis thaliana 1-deoxy-D-xylulose 5-phosphate reductoisomerase is the first committed enzyme of the non-mevalonate pathway for isoprenoid biosynthesis.; GO: 0003824 catalytic activity, 0008299 isoprenoid biosynthetic process.
Probab=88.55 E-value=0.6 Score=25.01 Aligned_cols=41 Identities=32% Similarity=0.611 Sum_probs=31.6
Q ss_pred CCEEEEEECCCCHHHHHHHHHHHHCCCCEEEEEEEECCCCCCEEEE
Q ss_conf 9617999816677899999999744998078999974765875600
Q gi|254780307|r 1 MTFKVAVVGATGNVGREMLNIICERGFPISEVVALASERSAGTKVP 46 (335)
Q Consensus 1 M~~kvaIiGatG~vG~el~~lL~~~~~p~~~l~~~~s~~~~G~~i~ 46 (335)
||-++.|+|+||=+|..=+.++.+|+ ..++++.+ ++|+.+.
T Consensus 2 ~K~~i~iLGSTGSIG~~TL~v~~~~~-~~f~~~aL----~~GkNv~ 42 (406)
T TIGR00243 2 LKQNIVILGSTGSIGKQTLDVVRHHP-DKFQVVAL----SAGKNVA 42 (406)
T ss_pred CCCCEEEECCCCCHHHHHHHHHHHCC-CCEEEEEE----ECCHHHH
T ss_conf 75523674377501356899997388-70899864----0341799
No 238
>pfam07993 NAD_binding_4 Male sterility protein. This family represents the C-terminal region of the male sterility protein in a number of arabidopsis and drosophila. A sequence-related jojoba acyl CoA reductase is also included.
Probab=88.47 E-value=0.35 Score=26.41 Aligned_cols=30 Identities=27% Similarity=0.474 Sum_probs=22.2
Q ss_pred EECCCCHHHHHHHHHHHHCCCCEEEEEEEEC
Q ss_conf 9816677899999999744998078999974
Q gi|254780307|r 7 VVGATGNVGREMLNIICERGFPISEVVALAS 37 (335)
Q Consensus 7 IiGatG~vG~el~~lL~~~~~p~~~l~~~~s 37 (335)
|-||||++|+.|++.|.++. +..++..+.-
T Consensus 1 vTGaTGFlG~~ll~~Ll~~~-~~~~V~~LvR 30 (245)
T pfam07993 1 LTGATGFLGKVLLEKLLRSC-PEVKIYCLVR 30 (245)
T ss_pred CCCCHHHHHHHHHHHHHHCC-CCCEEEEEEC
T ss_conf 93843599999999999579-9978999967
No 239
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=88.39 E-value=0.9 Score=23.93 Aligned_cols=82 Identities=17% Similarity=0.273 Sum_probs=48.6
Q ss_pred EEEEEECCCCHHHHHHHHHHHHCCCCEEEEEEEECCCCCCEE----EECCCCEEEEEECCHHHHCCCCEEEECCCH-HHH
Q ss_conf 179998166778999999997449980789999747658756----002781589987794363188478606875-899
Q gi|254780307|r 3 FKVAVVGATGNVGREMLNIICERGFPISEVVALASERSAGTK----VPFGKETIDVQDVKSYDFSDTDICLMSAGH-AVS 77 (335)
Q Consensus 3 ~kvaIiGatG~vG~el~~lL~~~~~p~~~l~~~~s~~~~G~~----i~~~~~~~~~~~~~~~~~~~~Divf~a~p~-~~s 77 (335)
.+|.|+|+ |-||..=+++|.+-+ .++..+ |++. ... +..+.-...-++.+..++.++++||.|+++ ...
T Consensus 13 k~VlvvGg-G~va~rKa~~ll~~g---a~v~Vv-s~~~-~~el~~~~~~~~i~~~~~~~~~~~~~~~~lviaAt~d~~ln 86 (210)
T COG1648 13 KKVLVVGG-GSVALRKARLLLKAG---ADVTVV-SPEF-EPELKALIEEGKIKWIEREFDAEDLDDAFLVIAATDDEELN 86 (210)
T ss_pred CEEEEECC-CHHHHHHHHHHHHCC---CEEEEE-CCCC-CHHHHHHHHHCCCCHHHCCCCHHHHCCCEEEEEECCCHHHH
T ss_conf 77999899-899999999997469---979998-7874-49999999834853100223636536824999916998999
Q ss_pred HHHHHHHCCCCEE
Q ss_conf 9999750456517
Q gi|254780307|r 78 SQMSPKIAANGCI 90 (335)
Q Consensus 78 ~~~~~~~~~~g~~ 90 (335)
+++...+.+.+..
T Consensus 87 ~~i~~~a~~~~i~ 99 (210)
T COG1648 87 ERIAKAARERRIL 99 (210)
T ss_pred HHHHHHHHHHCCC
T ss_conf 9999999993993
No 240
>PRK11728 hypothetical protein; Provisional
Probab=88.14 E-value=1.3 Score=22.90 Aligned_cols=35 Identities=23% Similarity=0.499 Sum_probs=28.0
Q ss_pred CCEEEEEECCCCHHHHHHHHHHHHCCCCEEEEEEEEC
Q ss_conf 9617999816677899999999744998078999974
Q gi|254780307|r 1 MTFKVAVVGATGNVGREMLNIICERGFPISEVVALAS 37 (335)
Q Consensus 1 M~~kvaIiGatG~vG~el~~lL~~~~~p~~~l~~~~s 37 (335)
|.|.|.|||| |.+|.-+.+-|.++ +|..++..+--
T Consensus 1 m~yDvvIIGg-GIvG~siA~~Ls~~-~~~~~V~vlEk 35 (400)
T PRK11728 1 MMYDFVIIGG-GIVGLSTAMQLQDR-YPGARIALLEK 35 (400)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHC-CCCCEEEEEEC
T ss_conf 9530999996-79999999999955-99983999968
No 241
>TIGR03025 EPS_sugtrans exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase. Certain closely related transferase enzymes such as Sinorhizobium ExoY and Lactococcus EpsD lack the N-terminal domain and are not found by this model.
Probab=88.11 E-value=1.9 Score=21.99 Aligned_cols=92 Identities=13% Similarity=0.142 Sum_probs=54.2
Q ss_pred EEEEEECCCCHHHHHHHHHHHHCCCCEEEEEEEECCC-CCCEEEECCCCEEEEEECCH---H-HHCCCCEEEECCCHHHH
Q ss_conf 1799981667789999999974499807899997476-58756002781589987794---3-63188478606875899
Q gi|254780307|r 3 FKVAVVGATGNVGREMLNIICERGFPISEVVALASER-SAGTKVPFGKETIDVQDVKS---Y-DFSDTDICLMSAGHAVS 77 (335)
Q Consensus 3 ~kvaIiGatG~vG~el~~lL~~~~~p~~~l~~~~s~~-~~G~~i~~~~~~~~~~~~~~---~-~~~~~Divf~a~p~~~s 77 (335)
-|+.|+|+ |-.|.++.+.+.++.....++..+-+.+ +.+..+ .+.. .+.+.++ . .-.++|-|+.|.|....
T Consensus 126 rrvlIIG~-g~~~~~l~~~l~~~~~~g~~vvG~~dd~~~~~~~~--~~~p-~lg~~~~l~~~i~~~~ideViIa~p~~~~ 201 (445)
T TIGR03025 126 RRVLIVGT-GELAEELAAALSRNPDLGYRVVGFVDDRPEDRVEV--AGLP-VLGKLDDLVELVRAHRVDEVIIALPLSEE 201 (445)
T ss_pred CEEEEEEC-CHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCC--CCCC-CCCCHHHHHHHHHHCCCCEEEEECCCCCH
T ss_conf 23999908-48999999999828468848999977875444556--7886-01889999999997699889996586776
Q ss_pred ---HHHHHHHCCCCEEEEECCCCH
Q ss_conf ---999975045651799614510
Q gi|254780307|r 78 ---SQMSPKIAANGCIVIDNSSAW 98 (335)
Q Consensus 78 ---~~~~~~~~~~g~~VIDlS~~~ 98 (335)
.+....+...|+.|.....-+
T Consensus 202 ~~~~~~l~~~~~~~v~v~~ip~~~ 225 (445)
T TIGR03025 202 ARILELLLQLSDLGVDVRLVPDLF 225 (445)
T ss_pred HHHHHHHHHHHHCCCEEEEECCHH
T ss_conf 899999999875597899958466
No 242
>pfam02153 PDH Prephenate dehydrogenase. Members of this family are prephenate dehydrogenases EC:1.3.1.12 involved in tyrosine biosynthesis.
Probab=88.08 E-value=0.89 Score=23.97 Aligned_cols=71 Identities=15% Similarity=0.151 Sum_probs=42.4
Q ss_pred CCCEEEEEEEECCCCC-CEEEECCCCEEEEEECCHHHHCCCCEEEECCCHHHHHHHHHHHC---CCCEEEEECCCCH
Q ss_conf 9980789999747658-75600278158998779436318847860687589999997504---5651799614510
Q gi|254780307|r 26 GFPISEVVALASERSA-GTKVPFGKETIDVQDVKSYDFSDTDICLMSAGHAVSSQMSPKIA---ANGCIVIDNSSAW 98 (335)
Q Consensus 26 ~~p~~~l~~~~s~~~~-G~~i~~~~~~~~~~~~~~~~~~~~Divf~a~p~~~s~~~~~~~~---~~g~~VIDlS~~~ 98 (335)
..+..++..+..+... -+....+--+-... +.+...++|+||+|+|-+...++.+.+. ..++.|.|.+|.=
T Consensus 8 ~~~~~~I~g~d~~~~~~~~A~~~g~id~~~~--~~~~~~~aDlvila~Pv~~~~~~l~~l~~~~~~~~ivtDv~SvK 82 (258)
T pfam02153 8 KGFNVTVIGYDIDEEAAVAAVELGLGDEATN--DIEAAQEADIVVLAVPIEVTLEVLKELAPHLKEGALITDVGSVK 82 (258)
T ss_pred CCCCCEEEEEECCHHHHHHHHHCCCCCCCCC--CHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCCCEEEECCCCC
T ss_conf 6999679998599999999998699032468--67776679999996999999999999886558995899535555
No 243
>PRK05868 hypothetical protein; Validated
Probab=88.00 E-value=1.3 Score=23.05 Aligned_cols=46 Identities=22% Similarity=0.323 Sum_probs=31.0
Q ss_pred CCEEEEEECCCCHHHHHHHHHHHHCCCCEEEEEEEECCCCCCEEEECC
Q ss_conf 961799981667789999999974499807899997476587560027
Q gi|254780307|r 1 MTFKVAVVGATGNVGREMLNIICERGFPISEVVALASERSAGTKVPFG 48 (335)
Q Consensus 1 M~~kvaIiGatG~vG~el~~lL~~~~~p~~~l~~~~s~~~~G~~i~~~ 48 (335)
|+ ||.|+|| |..|..+--.|.+++|...=+....+.+..|..|.+.
T Consensus 1 ~~-kVlIvGa-GiAGlalA~~L~r~G~~VtV~Er~p~~r~~G~~i~l~ 46 (372)
T PRK05868 1 MK-TVLVSGA-SVAGTAAAYWLGRHGYSVTMVERHPGLRPGGQAIDVR 46 (372)
T ss_pred CC-EEEEECC-CHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEEEC
T ss_conf 99-9999898-8899999999985899889995799988899667468
No 244
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=87.93 E-value=1.3 Score=22.91 Aligned_cols=31 Identities=32% Similarity=0.646 Sum_probs=24.4
Q ss_pred CCEEEEEECCCCHHHHHHHHHHHHCCCCEEEEEEEE
Q ss_conf 961799981667789999999974499807899997
Q gi|254780307|r 1 MTFKVAVVGATGNVGREMLNIICERGFPISEVVALA 36 (335)
Q Consensus 1 M~~kvaIiGatG~vG~el~~lL~~~~~p~~~l~~~~ 36 (335)
|| +|+|||| |.+|.-.---|.++++ ++..+.
T Consensus 1 m~-~V~VIGa-GivGlstA~~La~~G~---~VtviD 31 (410)
T PRK12409 1 MS-HIAVIGA-GITGVTTAYALAQRGY---QVTVFD 31 (410)
T ss_pred CC-CEEEECC-HHHHHHHHHHHHHCCC---CEEEEE
T ss_conf 99-5999898-3999999999997899---189996
No 245
>pfam02826 2-Hacid_dh_C D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain. This domain is inserted into the catalytic domain, the large dehydrogenase and D-lactate dehydrogenase families in SCOP. N-terminal portion of which is represented by family pfam00389.
Probab=87.63 E-value=1.8 Score=22.07 Aligned_cols=83 Identities=14% Similarity=0.217 Sum_probs=46.7
Q ss_pred EEEEEECCCCHHHHHHHHHHHHCCCCEEEEEEEECCCCCCEEEECCCCEEEEEECCHHHHCCCCEEEECCCHHHH-----
Q ss_conf 179998166778999999997449980789999747658756002781589987794363188478606875899-----
Q gi|254780307|r 3 FKVAVVGATGNVGREMLNIICERGFPISEVVALASERSAGTKVPFGKETIDVQDVKSYDFSDTDICLMSAGHAVS----- 77 (335)
Q Consensus 3 ~kvaIiGatG~vG~el~~lL~~~~~p~~~l~~~~s~~~~G~~i~~~~~~~~~~~~~~~~~~~~Divf~a~p~~~s----- 77 (335)
.+|+|+|. |.+|+++.+++. .| ..++..+..... . ..........++ ++-++.+|++++++|....
T Consensus 37 k~vgIiG~-G~IG~~va~~l~--~f-g~~V~~~d~~~~--~--~~~~~~~~~~~l-~~ll~~sDii~~~~plt~~T~~li 107 (176)
T pfam02826 37 KTVGIIGL-GRIGRAVARRLK--AF-GMKVIAYDRYPK--A--EAEALGARYVSL-DELLAESDVVSLHLPLTPETRHLI 107 (176)
T ss_pred CEEEEECC-CHHHHHHHHHHH--HH-CCCEEEECCCCC--C--HHHHCCEEECCH-HHHHHHCCEEEECCCCCCCCCCCC
T ss_conf 99999896-999999999999--83-981254379876--1--023157166689-999862998875476742024634
Q ss_pred -HHHHHHHCCCCEEEEECC
Q ss_conf -999975045651799614
Q gi|254780307|r 78 -SQMSPKIAANGCIVIDNS 95 (335)
Q Consensus 78 -~~~~~~~~~~g~~VIDlS 95 (335)
.+..... +.++.+|-.|
T Consensus 108 ~~~~l~~m-k~~a~lIN~s 125 (176)
T pfam02826 108 NAERLALM-KPGAILINTA 125 (176)
T ss_pred CHHHHHHH-CCCCEEEEEC
T ss_conf 69999851-8998899806
No 246
>COG0743 Dxr 1-deoxy-D-xylulose 5-phosphate reductoisomerase [Lipid metabolism]
Probab=87.58 E-value=1.4 Score=22.78 Aligned_cols=37 Identities=38% Similarity=0.631 Sum_probs=29.0
Q ss_pred CCEEEEEECCCCHHHHHHHHHHHHCCCCEEEEEEEECCC
Q ss_conf 961799981667789999999974499807899997476
Q gi|254780307|r 1 MTFKVAVVGATGNVGREMLNIICERGFPISEVVALASER 39 (335)
Q Consensus 1 M~~kvaIiGatG~vG~el~~lL~~~~~p~~~l~~~~s~~ 39 (335)
|+ |+.|+|+||=+|..-++++.++. ..+++..++.-+
T Consensus 1 ~k-~i~iLGSTGSIG~qtLdVi~~~p-~~f~vval~ag~ 37 (385)
T COG0743 1 MK-KLTILGSTGSIGTQTLDVIRRNP-DKFEVVALAAGK 37 (385)
T ss_pred CC-EEEEEECCCCHHHHHHHHHHHCC-CCEEEEEEECCC
T ss_conf 94-59997168734288999999689-857999973487
No 247
>pfam02254 TrkA_N TrkA-N domain. This domain is found in a wide variety of proteins. These protein include potassium channels, phosphoesterases, and various other transporters. This domain binds to NAD.
Probab=87.47 E-value=2.1 Score=21.76 Aligned_cols=73 Identities=19% Similarity=0.315 Sum_probs=42.6
Q ss_pred EEEECCCCHHHHHHHHHHHHCCCCEEEEEEEECCCCCCEEEECCCCEEEEEECC------HHHHCCCCEEEECCCHHHHH
Q ss_conf 999816677899999999744998078999974765875600278158998779------43631884786068758999
Q gi|254780307|r 5 VAVVGATGNVGREMLNIICERGFPISEVVALASERSAGTKVPFGKETIDVQDVK------SYDFSDTDICLMSAGHAVSS 78 (335)
Q Consensus 5 vaIiGatG~vG~el~~lL~~~~~p~~~l~~~~s~~~~G~~i~~~~~~~~~~~~~------~~~~~~~Divf~a~p~~~s~ 78 (335)
|.|+|. |-+|+.+.+.|.+++ ++..+..+...=+.....+-....-|.. .....++|.++.+++++...
T Consensus 1 viI~G~-g~~G~~la~~L~~~~----~v~vId~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~vi~~~~~d~~n 75 (115)
T pfam02254 1 IIIIGY-GRVGRSLAEELREGG----PVVVIDKDPERVEELREEGVPVVVGDATDEEVLEEAGIEDADAVVAATGDDEAN 75 (115)
T ss_pred CEEECC-CHHHHHHHHHHHHCC----CEEEEECCHHHHHHHHHCCCEEEEEECCCHHHHHHHCCCCCCEEEEECCCHHHH
T ss_conf 999878-889999999998089----999999987998778866986999956886678761920287999962984999
Q ss_pred HHHH
Q ss_conf 9997
Q gi|254780307|r 79 QMSP 82 (335)
Q Consensus 79 ~~~~ 82 (335)
-..-
T Consensus 76 ~~~~ 79 (115)
T pfam02254 76 ILIV 79 (115)
T ss_pred HHHH
T ss_conf 9999
No 248
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=87.13 E-value=2.2 Score=21.64 Aligned_cols=97 Identities=12% Similarity=0.150 Sum_probs=55.2
Q ss_pred EEEEEECCCCHHHHHHHHHHHHCCCCEEEEEE-------------EECCCCCCEEE--------ECCCCEEEE----EEC
Q ss_conf 17999816677899999999744998078999-------------97476587560--------027815899----877
Q gi|254780307|r 3 FKVAVVGATGNVGREMLNIICERGFPISEVVA-------------LASERSAGTKV--------PFGKETIDV----QDV 57 (335)
Q Consensus 3 ~kvaIiGatG~vG~el~~lL~~~~~p~~~l~~-------------~~s~~~~G~~i--------~~~~~~~~~----~~~ 57 (335)
-||.|+|+ |-+|.++.+-|...+.-.+.+.- +.+++..|++- ..-.....+ ..+
T Consensus 22 s~VlvvG~-GGLG~~v~~~La~aGvg~i~ivD~d~v~~snL~RQ~l~~~~diG~~Ka~~a~~~l~~lNp~v~i~~~~~~~ 100 (197)
T cd01492 22 ARILLIGL-KGLGAEIAKNLVLSGIGSLTILDDRTVTEEDLGAQFLIPAEDLGQNRAEASLERLRALNPRVKVSVDTDDI 100 (197)
T ss_pred CCEEEECC-CHHHHHHHHHHHHHCCCEEEEEECCCCCHHHCCCCEECCCCCCCCCHHHHHHHHHHHHCCCCEEEEEECCC
T ss_conf 95999887-88999999999983798699998991877773978603233478885999999999738997289870458
Q ss_pred CH---HHHCCCCEEEECCCHHHHHHHHHHH-CCCCEEEEECCCCHHCC
Q ss_conf 94---3631884786068758999999750-45651799614510011
Q gi|254780307|r 58 KS---YDFSDTDICLMSAGHAVSSQMSPKI-AANGCIVIDNSSAWRYD 101 (335)
Q Consensus 58 ~~---~~~~~~Divf~a~p~~~s~~~~~~~-~~~g~~VIDlS~~~R~~ 101 (335)
++ +-+++.|+|+-|+++-.++..+.++ .+.|+..|.-+ .+++.
T Consensus 101 ~~~~~~~i~~~D~Vvd~~dn~~~r~~iN~~c~~~~iplI~g~-~~g~~ 147 (197)
T cd01492 101 SEKPEEFFSQFDVVVATELSRAELVKINELCRKLGVKFYATG-VHGLF 147 (197)
T ss_pred CHHHHHHHHCCCEEEECCCCHHHHHHHHHHHHHCCCCEEEEE-ECCCE
T ss_conf 576899982899999999999999999999998199789998-13755
No 249
>PRK10124 putative UDP-glucose lipid carrier transferase; Provisional
Probab=87.01 E-value=1.5 Score=22.64 Aligned_cols=84 Identities=15% Similarity=0.202 Sum_probs=49.6
Q ss_pred EEEEEECCCCHHHHHHHHHHHHCCCCEEEEEEEECCC-CCCEEEECCCCEEEEEECCH-HHHCCCCEEEECCCHHHHHH-
Q ss_conf 1799981667789999999974499807899997476-58756002781589987794-36318847860687589999-
Q gi|254780307|r 3 FKVAVVGATGNVGREMLNIICERGFPISEVVALASER-SAGTKVPFGKETIDVQDVKS-YDFSDTDICLMSAGHAVSSQ- 79 (335)
Q Consensus 3 ~kvaIiGatG~vG~el~~lL~~~~~p~~~l~~~~s~~-~~G~~i~~~~~~~~~~~~~~-~~~~~~Divf~a~p~~~s~~- 79 (335)
-+|+|+|+ |-.|+++.+.+.++.+--.++.-+.+++ ..+..++..++ ++++.+ ..-.++|-|+.|+|-....+
T Consensus 145 r~v~IvG~-~~~~~~l~~~i~~~p~~G~~vvG~~dd~~~~~~~~~~lG~---~~~l~~~~~~~~id~V~ialp~~~~~~i 220 (464)
T PRK10124 145 RMVAVAGD-LPAGQMLLESFRNQPWLGFEVVGVYHDPKPGGVSNDWAGN---LQQLVEDAKAGKIHNVYIAMSMCDGARV 220 (464)
T ss_pred EEEEEECC-CHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCC---HHHHHHHHHHCCCCEEEEECCCCHHHHH
T ss_conf 38999838-8899999999972966796699996688766678998789---9999999986899989996682368899
Q ss_pred --HHHHHCCCCEE
Q ss_conf --99750456517
Q gi|254780307|r 80 --MSPKIAANGCI 90 (335)
Q Consensus 80 --~~~~~~~~g~~ 90 (335)
+...+.+.++.
T Consensus 221 ~~lv~~l~~~~v~ 233 (464)
T PRK10124 221 KKLVHQLADTTCS 233 (464)
T ss_pred HHHHHHHHHCCCE
T ss_conf 9999999618955
No 250
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=86.88 E-value=0.6 Score=24.99 Aligned_cols=20 Identities=25% Similarity=0.290 Sum_probs=8.7
Q ss_pred CCHHHHHHHHHHCCCCEEEC
Q ss_conf 87899987310069838810
Q gi|254780307|r 254 ISIKDAVAAINKSKGCIVVD 273 (335)
Q Consensus 254 ~~~~~i~~~~~~~~~~~~~~ 273 (335)
++.+.+.++++.-+...++|
T Consensus 253 i~~~~ve~a~~~r~~~livD 272 (414)
T COG0373 253 ITREMVERALKIRKRLLIVD 272 (414)
T ss_pred CCHHHHHHHHHCCCCEEEEE
T ss_conf 07888998874116759998
No 251
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=86.81 E-value=1.4 Score=22.75 Aligned_cols=100 Identities=15% Similarity=0.208 Sum_probs=63.5
Q ss_pred CEEEEEECCCCHHHHHHHHHHHHCCCCEEEEEEEECCCCCCEEEECCCCEEEEEECCHHHHCCCCEEEECCCHHHHHHHH
Q ss_conf 61799981667789999999974499807899997476587560027815899877943631884786068758999999
Q gi|254780307|r 2 TFKVAVVGATGNVGREMLNIICERGFPISEVVALASERSAGTKVPFGKETIDVQDVKSYDFSDTDICLMSAGHAVSSQMS 81 (335)
Q Consensus 2 ~~kvaIiGatG~vG~el~~lL~~~~~p~~~l~~~~s~~~~G~~i~~~~~~~~~~~~~~~~~~~~Divf~a~p~~~s~~~~ 81 (335)
.+||.++|++--+...+.+.|.+ .+|.++++...+. +|...+.. +-++...-++.|++|.+++.-....+.
T Consensus 46 ~~~v~llG~~~~~~~~~~~~l~~-~yp~l~i~g~~~g-------~f~~~~~~-~i~~~I~~~~~div~vglG~PkQE~~~ 116 (171)
T cd06533 46 GLRVFLLGAKPEVLEKAAERLRA-RYPGLKIVGYHHG-------YFGPEEEE-EIIERINASGADILFVGLGAPKQELWI 116 (171)
T ss_pred CCEEEEEECCHHHHHHHHHHHHH-HCCCCEEEEEECC-------CCCHHHHH-HHHHHHHHCCCCEEEEECCCCHHHHHH
T ss_conf 97499980898999999999997-8899379998789-------99806689-999999864999999967982889999
Q ss_pred HHHCCCC--EEEEECCCCHHCCCCCCCCCCC
Q ss_conf 7504565--1799614510011211123641
Q gi|254780307|r 82 PKIAANG--CIVIDNSSAWRYDSDVPLIVPE 110 (335)
Q Consensus 82 ~~~~~~g--~~VIDlS~~~R~~~d~p~~lPe 110 (335)
.++.+.. ..++-..++|.+-.+..=..|.
T Consensus 117 ~~~~~~l~~~~~~~vGgafd~~aG~~~raP~ 147 (171)
T cd06533 117 ARHKDRLPVPVAIGVGGSFDFLAGTVKRAPK 147 (171)
T ss_pred HHHHHHCCCCEEEECCEEEEHHCCCCCCCCH
T ss_conf 9999877998698645121103078453649
No 252
>PRK07538 hypothetical protein; Provisional
Probab=86.71 E-value=1.5 Score=22.57 Aligned_cols=27 Identities=26% Similarity=0.475 Sum_probs=23.2
Q ss_pred EEEEEECCCCHHHHHHHHHHHHCCCCEE
Q ss_conf 1799981667789999999974499807
Q gi|254780307|r 3 FKVAVVGATGNVGREMLNIICERGFPIS 30 (335)
Q Consensus 3 ~kvaIiGatG~vG~el~~lL~~~~~p~~ 30 (335)
|||.|+|| |.+|.-+--.|.+++++..
T Consensus 1 m~V~IvGa-G~aGL~lA~~L~~~Gi~v~ 27 (413)
T PRK07538 1 MKVLIAGG-GIGGLTLALTLHQRGIEVE 27 (413)
T ss_pred CEEEEECC-CHHHHHHHHHHHHCCCCEE
T ss_conf 98999990-5899999999997899989
No 253
>pfam03808 Glyco_tran_WecB Glycosyl transferase WecB/TagA/CpsF family.
Probab=86.51 E-value=1.3 Score=22.98 Aligned_cols=97 Identities=14% Similarity=0.206 Sum_probs=63.2
Q ss_pred EEEEEECCCCHHHHHHHHHHHHCCCCEEEEEEEECCCCCCEEEECCCCEEEEEE-CCHHHHCCCCEEEECCCHHHHHHHH
Q ss_conf 179998166778999999997449980789999747658756002781589987-7943631884786068758999999
Q gi|254780307|r 3 FKVAVVGATGNVGREMLNIICERGFPISEVVALASERSAGTKVPFGKETIDVQD-VKSYDFSDTDICLMSAGHAVSSQMS 81 (335)
Q Consensus 3 ~kvaIiGatG~vG~el~~lL~~~~~p~~~l~~~~s~~~~G~~i~~~~~~~~~~~-~~~~~~~~~Divf~a~p~~~s~~~~ 81 (335)
.||.++|++--+...+.+.|.++ +|.++++...+. .+...+. ++ ++...-++.|++|.+++.-....+.
T Consensus 49 ~~v~llG~~~~~~~~~~~~l~~~-yP~l~i~g~~~g-------~f~~~e~--~~i~~~I~~~~~div~vglG~PkQE~~~ 118 (172)
T pfam03808 49 KRVFLLGGKPGVLEKAAARLRAR-YPGLRIVGTHDG-------YFSPEEE--EAIIEAINASGPDLLFVGLGAPKQEKWI 118 (172)
T ss_pred CEEEEEECCHHHHHHHHHHHHHH-CCCCEEEEEECC-------CCCHHHH--HHHHHHHHHCCCCEEEEECCCCHHHHHH
T ss_conf 83899808889999999999988-799559998799-------9986899--9999999845999999956981779999
Q ss_pred HHHCCC-C-EEEEECCCCHHCCCCCCCCCC
Q ss_conf 750456-5-179961451001121112364
Q gi|254780307|r 82 PKIAAN-G-CIVIDNSSAWRYDSDVPLIVP 109 (335)
Q Consensus 82 ~~~~~~-g-~~VIDlS~~~R~~~d~p~~lP 109 (335)
.++.+. + ..++-..++|.+-.+..=..|
T Consensus 119 ~~~~~~~~~~v~~~vGa~~d~~aG~~~raP 148 (172)
T pfam03808 119 ARNRARLPVPVFIGVGGSFDFLAGTVKRAP 148 (172)
T ss_pred HHHHHHCCCCEEEECCCHHHHHHCCCCCCC
T ss_conf 999987799879852401246637856477
No 254
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=86.49 E-value=2.2 Score=21.62 Aligned_cols=86 Identities=14% Similarity=0.292 Sum_probs=52.2
Q ss_pred EEEEECCCCHHHHHHHHHHHHCCCCEEEEEEEECCCCCC--EEEE--CCCCEEEEEECCHHHHCCCCEEEECCCHHHHHH
Q ss_conf 799981667789999999974499807899997476587--5600--278158998779436318847860687589999
Q gi|254780307|r 4 KVAVVGATGNVGREMLNIICERGFPISEVVALASERSAG--TKVP--FGKETIDVQDVKSYDFSDTDICLMSAGHAVSSQ 79 (335)
Q Consensus 4 kvaIiGatG~vG~el~~lL~~~~~p~~~l~~~~s~~~~G--~~i~--~~~~~~~~~~~~~~~~~~~Divf~a~p~~~s~~ 79 (335)
+.-|+|. |-.|.-+.++|.++++ ++.........- +.+. ..+-...+.+.+...+.++|.++.+-+=.....
T Consensus 9 ~~LV~G~-G~sG~s~a~~L~~~G~---~V~~~D~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~d~vv~SPgI~~~~p 84 (448)
T PRK03803 9 LRIVVGL-GKSGMSLVRFLARQGY---QFAVTDTRENPPELATLRRDYPQVEVRCGELDAEFLCQAEEIIVSPGLALATP 84 (448)
T ss_pred CEEEEEE-CHHHHHHHHHHHHCCC---EEEEEECCCCCHHHHHHHHHCCCCEEEECCCCHHHHCCCCEEEECCCCCCCCH
T ss_conf 5899998-9999999999997889---59999189991679999974799779978889778078999998997299999
Q ss_pred HHHHHCCCCEEEEE
Q ss_conf 99750456517996
Q gi|254780307|r 80 MSPKIAANGCIVID 93 (335)
Q Consensus 80 ~~~~~~~~g~~VID 93 (335)
.+..+.++|+.|+.
T Consensus 85 ~~~~a~~~~i~i~~ 98 (448)
T PRK03803 85 ALQAAAAAGIKISG 98 (448)
T ss_pred HHHHHHHCCCCEEC
T ss_conf 99999985996831
No 255
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=86.26 E-value=1.5 Score=22.63 Aligned_cols=14 Identities=21% Similarity=0.363 Sum_probs=10.3
Q ss_pred CCHHHHHHHHHHCC
Q ss_conf 87899987310069
Q gi|254780307|r 254 ISIKDAVAAINKSK 267 (335)
Q Consensus 254 ~~~~~i~~~~~~~~ 267 (335)
++.+.+.+++++-+
T Consensus 238 Vde~aL~~AL~~G~ 251 (324)
T COG0111 238 VDEDALLAALDSGK 251 (324)
T ss_pred ECHHHHHHHHHCCC
T ss_conf 35899999997098
No 256
>PRK09009 C factor cell-cell signaling protein; Provisional
Probab=86.08 E-value=2 Score=21.84 Aligned_cols=31 Identities=29% Similarity=0.572 Sum_probs=23.7
Q ss_pred EEEEEECCCCHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf 17999816677899999999744998078999
Q gi|254780307|r 3 FKVAVVGATGNVGREMLNIICERGFPISEVVA 34 (335)
Q Consensus 3 ~kvaIiGatG~vG~el~~lL~~~~~p~~~l~~ 34 (335)
|||-|.|+++=+|.++.+.|.+++ +...+..
T Consensus 1 mnVLITGas~GIG~aia~~l~~~~-~~~~v~~ 31 (235)
T PRK09009 1 MNILIVGGSGGIGKAMVKQLLETY-PDATVHA 31 (235)
T ss_pred CEEEEECCCHHHHHHHHHHHHHCC-CCEEEEE
T ss_conf 979997556399999999998569-9809999
No 257
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=85.88 E-value=2 Score=21.79 Aligned_cols=75 Identities=23% Similarity=0.366 Sum_probs=47.5
Q ss_pred EEEEEECCCCHHHHHHHHHHHHCCCCEEEEEEEECCCCCCEEEECCCCEEEEEECCHHHHCCCCEEEECCCHHHHHHHHH
Q ss_conf 17999816677899999999744998078999974765875600278158998779436318847860687589999997
Q gi|254780307|r 3 FKVAVVGATGNVGREMLNIICERGFPISEVVALASERSAGTKVPFGKETIDVQDVKSYDFSDTDICLMSAGHAVSSQMSP 82 (335)
Q Consensus 3 ~kvaIiGatG~vG~el~~lL~~~~~p~~~l~~~~s~~~~G~~i~~~~~~~~~~~~~~~~~~~~Divf~a~p~~~s~~~~~ 82 (335)
.++.|+|-|..||+=|-.+|..++ ..+....|.. .++ ......+|+++.|.+.--- +-+
T Consensus 45 k~vvViGrS~iVG~Pla~lL~~~~---atVt~chs~T---------------~~l-~~~~~~ADIvIsA~G~~~l--i~~ 103 (168)
T cd01080 45 KKVVVVGRSNIVGKPLAALLLNRN---ATVTVCHSKT---------------KNL-KEHTKQADIVIVAVGKPGL--VKG 103 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHHCC---CEEEEECCCC---------------CCH-HHHHHHCCEEEEECCCCCC--CCH
T ss_conf 569998787300899999998489---9799976898---------------897-9974104535541587663--789
Q ss_pred HHCCCCEEEEECCCCH
Q ss_conf 5045651799614510
Q gi|254780307|r 83 KIAANGCIVIDNSSAW 98 (335)
Q Consensus 83 ~~~~~g~~VIDlS~~~ 98 (335)
.+.+.|..|||..-.+
T Consensus 104 ~~vk~gavvIDvGin~ 119 (168)
T cd01080 104 DMVKPGAVVIDVGINR 119 (168)
T ss_pred HHCCCCCEEEECCCCC
T ss_conf 9958998899666542
No 258
>pfam00070 Pyr_redox Pyridine nucleotide-disulphide oxidoreductase. This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain.
Probab=85.83 E-value=2.5 Score=21.22 Aligned_cols=66 Identities=26% Similarity=0.395 Sum_probs=41.6
Q ss_pred EEEEECCCCHHHHHHHHHHHHCCCCEEEEEEEECCCCCCEEEECCCCEEEEEECCHHHHCCCCEEEECCCHHHHHHHHHH
Q ss_conf 79998166778999999997449980789999747658756002781589987794363188478606875899999975
Q gi|254780307|r 4 KVAVVGATGNVGREMLNIICERGFPISEVVALASERSAGTKVPFGKETIDVQDVKSYDFSDTDICLMSAGHAVSSQMSPK 83 (335)
Q Consensus 4 kvaIiGatG~vG~el~~lL~~~~~p~~~l~~~~s~~~~G~~i~~~~~~~~~~~~~~~~~~~~Divf~a~p~~~s~~~~~~ 83 (335)
|+.|+|+ |++|-|+-..|.+.+ .++..+... |-++-..+.+.+..+.+.
T Consensus 1 rv~iiGg-G~ig~E~A~~l~~~G---~~Vtiie~~---------------------------~~~l~~~d~~~~~~~~~~ 49 (82)
T pfam00070 1 RVVVVGG-GYIGLEFASALAKLG---SKVTVVERR---------------------------DRLLRGFDEEIAKILQEK 49 (82)
T ss_pred CEEEECC-CHHHHHHHHHHHHCC---CEEEEECCC---------------------------CCCCHHCCHHHHHHHHHH
T ss_conf 9999998-899999999998639---278998125---------------------------733022798899999999
Q ss_pred HCCCCEEEEECCCCHHC
Q ss_conf 04565179961451001
Q gi|254780307|r 84 IAANGCIVIDNSSAWRY 100 (335)
Q Consensus 84 ~~~~g~~VIDlS~~~R~ 100 (335)
+.+.|..+.-.+..-+.
T Consensus 50 l~~~GV~i~~~~~v~~i 66 (82)
T pfam00070 50 LEKNGIEVLLNTTVEEI 66 (82)
T ss_pred HHHCCCEEECCCEEEEE
T ss_conf 98669999749999999
No 259
>PRK06407 ornithine cyclodeaminase; Provisional
Probab=85.64 E-value=1.6 Score=22.38 Aligned_cols=18 Identities=22% Similarity=0.342 Sum_probs=13.2
Q ss_pred CCCCCCCCCEEEEEEECC
Q ss_conf 343221120011211021
Q gi|254780307|r 225 PNIKVSCTAARVPVFIGH 242 (335)
Q Consensus 225 ~~~~v~~t~~~vPv~rG~ 242 (335)
.++-++.|+..-|+|++-
T Consensus 184 aDiI~taT~s~~Pv~~~~ 201 (302)
T PRK06407 184 ADTITSITNSDTPIFNRK 201 (302)
T ss_pred CCEEEEECCCCCCCCCHH
T ss_conf 999999418988671588
No 260
>TIGR00065 ftsZ cell division protein FtsZ; InterPro: IPR000158 In bacteria, FtsZ , , is an essential cell division protein which appears to be involved in the initiation of this event. It assembles into a cytokinetic ring on the inner surface of the cytoplasmic membrane at the place where division will occur. The ring serves as a scaffold that is disassembled when septation is completed. FtsZ ring formation is initiated at a single site on one side of the bacterium and appears to grow bidirectionally. In Escherichia coli, MinCD IPR005526 from INTERPRO, encoded by the MinB locus, form a complex which appears to block the formation of FtsZ rings at the cell poles, at the ancient mid cell division sites, whilst MinE, encoded at the same locus, specifically prevents the action of MinCD at mid cell. FtsZ is a GTP binding protein PDOC00199 from PROSITEDOC with a GTPase activity. It undergoes GTP-dependent polymerization into filaments (or tubules) that seem to form a cytoskeleton involved in septum synthesis. The structure and the properties of FtsZ clearly provide it with the capacity for the cytoskeletal, perhaps motor role, necessary for "contraction" along the division plane. In addition, however, the FtsZ ring structure provides the framework for the recruitment or assembly of the ten or so membrane and cytoplasmic proteins, uniquely required for cell division in E. coli or Bacillus subtilis, some of which are required for biogenesis of the new hemispherical poles of the two daughter cells. FtsZ can polymerize into various structures, for example a single linear polymer of FtsZ monomers, called a protofilament. Protofilaments can associate laterally to form pairs (sometimes called thick filaments, bundles (ill-defined linear associations of multiple protofilaments or thick filaments, sheets (parallel or anti-parallel two-dimensional associations of thick filaments and tubes (anti-parallel associations of thick filaments in a circular fashion to form a tubular structure). In addition, small circles of FtsZ monomers (a short protofilament bent around to join itself, apparently head to tail) have been observed and termed mini-rings. FtsZ is a protein of about 400 residues which is well conserved across bacterial species and which is also present in the chloroplast of plants as well as in archaebacteria . FtsZ shows structural similarity with eukaryotic tubulins. This similarity is probably both evolutionary and functionally significant.; GO: 0005525 GTP binding, 0005737 cytoplasm.
Probab=85.63 E-value=2.4 Score=21.35 Aligned_cols=98 Identities=18% Similarity=0.362 Sum_probs=59.1
Q ss_pred CEEEEEECCCCHHHHHHHHHHHHC----CCCEEEEEEEECC------CC-CCEEEECCCCEEE---------------EE
Q ss_conf 617999816677899999999744----9980789999747------65-8756002781589---------------98
Q gi|254780307|r 2 TFKVAVVGATGNVGREMLNIICER----GFPISEVVALASE------RS-AGTKVPFGKETID---------------VQ 55 (335)
Q Consensus 2 ~~kvaIiGatG~vG~el~~lL~~~----~~p~~~l~~~~s~------~~-~G~~i~~~~~~~~---------------~~ 55 (335)
+.||.|+|. |=.|...+.+|.++ .+-.++..++=++ +. +.+++..+.+... -+
T Consensus 17 ~akI~ViGv-GGgGnN~v~rm~~~~p~l~~~g~~fiA~NTD~Q~L~~~~~A~~kilIG~~~TrGLGAGG~P~iG~~AAee 95 (365)
T TIGR00065 17 KAKIKVIGV-GGGGNNAVNRMVEEYPELGVEGVEFIAINTDAQHLKTTKYAPKKILIGKKLTRGLGAGGNPEIGRKAAEE 95 (365)
T ss_pred CEEEEEEEE-CCCCHHHHHHHHHHCCCCCCCCEEEEEECCCHHHHHCCCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHH
T ss_conf 628999985-5882358999987055322376269997483785411556241356157335567679983888999898
Q ss_pred ECCH--HHHCCCCEEEECC------CHHHHHHHHHHHCCCCEEEEEC-CCCHHC
Q ss_conf 7794--3631884786068------7589999997504565179961-451001
Q gi|254780307|r 56 DVKS--YDFSDTDICLMSA------GHAVSSQMSPKIAANGCIVIDN-SSAWRY 100 (335)
Q Consensus 56 ~~~~--~~~~~~Divf~a~------p~~~s~~~~~~~~~~g~~VIDl-S~~~R~ 100 (335)
+.++ ..+++.|+||.++ +.+.|.-+++-+.+.|+..|-- +-.|.+
T Consensus 96 s~d~i~~~l~GaDmVFitAGmGGGTGTGAAPVvA~~AK~~GaLTvavVT~PF~~ 149 (365)
T TIGR00065 96 SRDEIRELLEGADMVFITAGMGGGTGTGAAPVVAKIAKELGALTVAVVTKPFKF 149 (365)
T ss_pred HHHHHHHHCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHCCEEEEEEECCCCCC
T ss_conf 899999970388818997258668666635789999975790699984287410
No 261
>PRK04965 nitric oxide reductase; Provisional
Probab=85.60 E-value=1.5 Score=22.66 Aligned_cols=37 Identities=14% Similarity=0.372 Sum_probs=30.4
Q ss_pred CCEEEEEECCCCHHHHHHHHHHHHCCCCEEEEEEEECCC
Q ss_conf 961799981667789999999974499807899997476
Q gi|254780307|r 1 MTFKVAVVGATGNVGREMLNIICERGFPISEVVALASER 39 (335)
Q Consensus 1 M~~kvaIiGatG~vG~el~~lL~~~~~p~~~l~~~~s~~ 39 (335)
|+-+|-|||+ |+.|..+.+.|-+++ |..++..++.+.
T Consensus 1 M~~~IVIIG~-G~AG~~aa~~lR~~d-~~~~Itvi~~e~ 37 (378)
T PRK04965 1 MSNGIVIIGS-GFAARQLVKNIRKQD-AHIPITLITADS 37 (378)
T ss_pred CCCCEEEECC-CHHHHHHHHHHHCCC-CCCCEEEEECCC
T ss_conf 9899999988-299999999997119-498699998999
No 262
>PRK07608 hypothetical protein; Provisional
Probab=85.60 E-value=1.1 Score=23.38 Aligned_cols=28 Identities=39% Similarity=0.732 Sum_probs=24.4
Q ss_pred CCEEEEEECCCCHHHHHHHHHHHHCCCCE
Q ss_conf 96179998166778999999997449980
Q gi|254780307|r 1 MTFKVAVVGATGNVGREMLNIICERGFPI 29 (335)
Q Consensus 1 M~~kvaIiGatG~vG~el~~lL~~~~~p~ 29 (335)
|++.|.|+|+ |.+|.-+--.|..+++..
T Consensus 4 m~~DV~IvGa-Gp~Gl~lA~~La~~G~~v 31 (389)
T PRK07608 4 MKFDVAVVGG-GLVGKSLALALAQSGLRV 31 (389)
T ss_pred CCCCEEEECC-CHHHHHHHHHHHHCCCCE
T ss_conf 9998899990-689999999998379988
No 263
>PRK03815 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=85.58 E-value=1.6 Score=22.37 Aligned_cols=62 Identities=15% Similarity=0.193 Sum_probs=34.8
Q ss_pred EEEEEECCCCHHHHHHHHHHHHCCCCEEEEEEEECCCCCCEEEECCCCEEEEEECCHHHHCCCCEEEECC
Q ss_conf 1799981667789999999974499807899997476587560027815899877943631884786068
Q gi|254780307|r 3 FKVAVVGATGNVGREMLNIICERGFPISEVVALASERSAGTKVPFGKETIDVQDVKSYDFSDTDICLMSA 72 (335)
Q Consensus 3 ~kvaIiGatG~vG~el~~lL~~~~~p~~~l~~~~s~~~~G~~i~~~~~~~~~~~~~~~~~~~~Divf~a~ 72 (335)
|||+|+|. |..|+-..+.|.+++ . ...+.+.... ......+ ..+.+..++++...|+++.+=
T Consensus 1 mKi~V~Gl-G~sG~s~a~~L~~~g--~--~~i~dD~~~~-~~~~~~~--~~~~~~~~~~~~~~d~vv~SP 62 (401)
T PRK03815 1 MKISLFGY-GKTTKALARFFVKNG--G--VDIYDDKFTE-PKKDEEG--NLLLPSNDFDPNKSDLEIPSP 62 (401)
T ss_pred CEEEEEEE-CHHHHHHHHHHHHCC--C--EEEEECCCCC-CCHHHHH--CCCCCHHHCCCHHCCEEEECC
T ss_conf 93999847-771899999999487--9--7999899986-2224640--400684335801286899899
No 264
>cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4. Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in
Probab=85.54 E-value=1.4 Score=22.70 Aligned_cols=70 Identities=19% Similarity=0.234 Sum_probs=44.9
Q ss_pred EEEEEECCCCHHHHHHHHHHHH--CCCCEEEEEEEECCCCCC-------E-EEECCCCEEEEEECC--HHHHCCCCEEEE
Q ss_conf 1799981667789999999974--499807899997476587-------5-600278158998779--436318847860
Q gi|254780307|r 3 FKVAVVGATGNVGREMLNIICE--RGFPISEVVALASERSAG-------T-KVPFGKETIDVQDVK--SYDFSDTDICLM 70 (335)
Q Consensus 3 ~kvaIiGatG~vG~el~~lL~~--~~~p~~~l~~~~s~~~~G-------~-~i~~~~~~~~~~~~~--~~~~~~~Divf~ 70 (335)
|||+|+||-+.-..+|++-|.. +.+|..++.+..-+...- + -+...+.++.++-.. .+.++++|+||.
T Consensus 1 mKI~iIGaGS~~t~~lv~~l~~~~~~l~~~ei~L~DId~erL~~~~~~a~~~~~~~~~~~~v~~ttd~~eAl~gADfVi~ 80 (425)
T cd05197 1 VKIAIIGGGSSFTPELVSGLLKTPEELPISEVTLYDIDEERLDIILTIAKRYVEEVGADIKFEKTMDLEDAIIDADFVIN 80 (425)
T ss_pred CEEEEECCCHHHHHHHHHHHHHCHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHCCCCEEEE
T ss_conf 97999898368789999999838433788989998899999999999999999961998389997899998568999999
Q ss_pred CC
Q ss_conf 68
Q gi|254780307|r 71 SA 72 (335)
Q Consensus 71 a~ 72 (335)
+.
T Consensus 81 ~i 82 (425)
T cd05197 81 QF 82 (425)
T ss_pred EE
T ss_conf 88
No 265
>PRK12862 malic enzyme; Reviewed
Probab=85.49 E-value=2.6 Score=21.12 Aligned_cols=92 Identities=16% Similarity=0.212 Sum_probs=53.3
Q ss_pred EEEEEECCCCHHHHHHHHHHHHCCCCEEEEEEEECCCC--CCEEEECC-CC-EEE-EEEC--CHHHHCCCCEEEE-CCCH
Q ss_conf 17999816677899999999744998078999974765--87560027-81-589-9877--9436318847860-6875
Q gi|254780307|r 3 FKVAVVGATGNVGREMLNIICERGFPISEVVALASERS--AGTKVPFG-KE-TID-VQDV--KSYDFSDTDICLM-SAGH 74 (335)
Q Consensus 3 ~kvaIiGatG~vG~el~~lL~~~~~p~~~l~~~~s~~~--~G~~i~~~-~~-~~~-~~~~--~~~~~~~~Divf~-a~p~ 74 (335)
+||.|.|| |..|....++|..-+.+.-++....|..- .|+.-..+ .+ .+. -.+. -.+.+.+.|+.+- +.|+
T Consensus 193 ~kiv~~Ga-Gaa~~a~~~ll~~~G~~~~ni~~~D~~Gvi~~~r~~~~~~~k~~~a~~t~~~~l~ea~~gADvfig~S~~~ 271 (761)
T PRK12862 193 VKLVASGA-GAAALACLDLLVSLGVKRENIWVTDIKGVVYEGRTELMDPWKARYAQKTDARTLAEVIEGADVFLGLSAAG 271 (761)
T ss_pred EEEEEECC-CHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHCCCCEEEECCCCC
T ss_conf 18999788-78899999999983998101799946787778877430799999965079665999966898899806899
Q ss_pred HHHHHHHHHHCCCCEEEEECCC
Q ss_conf 8999999750456517996145
Q gi|254780307|r 75 AVSSQMSPKIAANGCIVIDNSS 96 (335)
Q Consensus 75 ~~s~~~~~~~~~~g~~VIDlS~ 96 (335)
-.+.++++...+. .+|+-++.
T Consensus 272 ~~~~e~v~~Ma~~-pivfalAN 292 (761)
T PRK12862 272 VLKPEMVKKMAPR-PLILALAN 292 (761)
T ss_pred CCCHHHHHHHCCC-CEEEECCC
T ss_conf 9999999852737-77862589
No 266
>PRK08163 salicylate hydroxylase; Provisional
Probab=85.44 E-value=2.1 Score=21.73 Aligned_cols=29 Identities=28% Similarity=0.397 Sum_probs=24.4
Q ss_pred CC--EEEEEECCCCHHHHHHHHHHHHCCCCEE
Q ss_conf 96--1799981667789999999974499807
Q gi|254780307|r 1 MT--FKVAVVGATGNVGREMLNIICERGFPIS 30 (335)
Q Consensus 1 M~--~kvaIiGatG~vG~el~~lL~~~~~p~~ 30 (335)
|+ -+|+|||| |.+|.-+-..|.+++++..
T Consensus 1 M~~~~~V~IVGa-GiaGL~lA~~L~r~Gi~v~ 31 (396)
T PRK08163 1 MTHVTPVLIVGG-GIGGLAAALALARQGIKVK 31 (396)
T ss_pred CCCCCEEEEECC-CHHHHHHHHHHHHCCCCEE
T ss_conf 989984999897-8899999999997899999
No 267
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=85.31 E-value=1.7 Score=22.23 Aligned_cols=36 Identities=17% Similarity=0.301 Sum_probs=28.1
Q ss_pred CCEEEEEECCCCHHHHHHHHHHHHCCCCEEEEEEEECC
Q ss_conf 96179998166778999999997449980789999747
Q gi|254780307|r 1 MTFKVAVVGATGNVGREMLNIICERGFPISEVVALASE 38 (335)
Q Consensus 1 M~~kvaIiGatG~vG~el~~lL~~~~~p~~~l~~~~s~ 38 (335)
|+.||-|+|+ ||.|....+.|..+. |..++.++.-.
T Consensus 2 ~~~~iVIlGg-GfgGl~~a~~l~~~~-~~~~itLVd~~ 37 (405)
T COG1252 2 MKKRIVILGG-GFGGLSAAKRLARKL-PDVEITLVDRR 37 (405)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCC-CCCEEEEEECC
T ss_conf 9756999898-679999999764167-88718999188
No 268
>cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases. Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas
Probab=85.25 E-value=1.6 Score=22.42 Aligned_cols=87 Identities=17% Similarity=0.305 Sum_probs=50.1
Q ss_pred EEEEEECCCCHHHHHHHHHHHH-C-CCCEEEEEEEECCCCC----C---EE-EECCCCEEEEEECC--HHHHCCCCEEEE
Q ss_conf 1799981667789999999974-4-9980789999747658----7---56-00278158998779--436318847860
Q gi|254780307|r 3 FKVAVVGATGNVGREMLNIICE-R-GFPISEVVALASERSA----G---TK-VPFGKETIDVQDVK--SYDFSDTDICLM 70 (335)
Q Consensus 3 ~kvaIiGatG~vG~el~~lL~~-~-~~p~~~l~~~~s~~~~----G---~~-i~~~~~~~~~~~~~--~~~~~~~Divf~ 70 (335)
|||+||||-+.-..+|++=|.. . .+|..++.+..-+... + +. ....+.++.++-.. .+.++++|+||.
T Consensus 1 mKI~iIGaGS~~t~~li~~l~~~~~~l~~~ei~L~DId~~rL~~~~~la~~~~~~~g~~~~i~~ttdr~eAL~gADfVi~ 80 (437)
T cd05298 1 FKIVIAGGGSTYTPGIVKSLLDRKEDFPLRELVLYDIDAERQEKVAEAVKILFKENYPEIKFVYTTDPEEAFTDADFVFA 80 (437)
T ss_pred CEEEEECCCHHHHHHHHHHHHHCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHCCCCEEEE
T ss_conf 96999898468779999999828200698889997799999999999999999852998179996799998579999999
Q ss_pred CC--CHHHHHHHHHHH-CCCCE
Q ss_conf 68--758999999750-45651
Q gi|254780307|r 71 SA--GHAVSSQMSPKI-AANGC 89 (335)
Q Consensus 71 a~--p~~~s~~~~~~~-~~~g~ 89 (335)
+. +.-.+.+.-.++ .+-|+
T Consensus 81 ~irvGg~~~r~~De~Ip~kyGi 102 (437)
T cd05298 81 QIRVGGYAMREQDEKIPLKHGV 102 (437)
T ss_pred EEEECCCHHHHHHHHHHHHCCC
T ss_conf 6652683267888767987597
No 269
>PRK09466 metL bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional
Probab=85.17 E-value=2.7 Score=21.03 Aligned_cols=93 Identities=16% Similarity=0.193 Sum_probs=51.3
Q ss_pred CEEEEEECCCCHHHHHHHHHHHHCC-----CCEEEEEEEECCCCCCEEEECCCCEE-----EE----EECCHHHH----C
Q ss_conf 6179998166778999999997449-----98078999974765875600278158-----99----87794363----1
Q gi|254780307|r 2 TFKVAVVGATGNVGREMLNIICERG-----FPISEVVALASERSAGTKVPFGKETI-----DV----QDVKSYDF----S 63 (335)
Q Consensus 2 ~~kvaIiGatG~vG~el~~lL~~~~-----~p~~~l~~~~s~~~~G~~i~~~~~~~-----~~----~~~~~~~~----~ 63 (335)
+++|+|+|. |.||++|++++.+.. ...++|..++-.+|.+..+...+-++ .+ +..+...| .
T Consensus 458 ~i~v~l~G~-G~VG~~ll~qi~~q~~~l~~~~~i~l~v~gianS~~~l~~~~Gi~l~~w~~~l~~~~~~~~~~~~~~~~~ 536 (810)
T PRK09466 458 RIGLVLFGK-GNIGSRWLELFAREQSTLSARTGFEFVLVGVVDSRRSLLNYDGIDASRALAFFDDEAVEQDEESLFLWLR 536 (810)
T ss_pred EEEEEEEEC-CHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCEEECCCCCCHHHHHHHHHHCCCCCCHHHHHHHHH
T ss_conf 577999825-7288999999999999988750973799999747505756889898999998765267676999999998
Q ss_pred ----CCCEEEECCCHHHHHHHHHHHCCCCEEEEECC
Q ss_conf ----88478606875899999975045651799614
Q gi|254780307|r 64 ----DTDICLMSAGHAVSSQMSPKIAANGCIVIDNS 95 (335)
Q Consensus 64 ----~~Divf~a~p~~~s~~~~~~~~~~g~~VIDlS 95 (335)
.-.+++=|+.++.-....+.+.++|+.||...
T Consensus 537 ~~~~~~~v~vD~t~s~~~~~~y~~~l~~g~~vvt~N 572 (810)
T PRK09466 537 AHPYDELVVLDVTASEQLALQYPDFASHGFHVISAN 572 (810)
T ss_pred HCCCCCCEEEECCCCHHHHHHHHHHHHHCCEEECCC
T ss_conf 538888779975747889999999998198798256
No 270
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=85.04 E-value=2.8 Score=20.99 Aligned_cols=137 Identities=15% Similarity=0.178 Sum_probs=75.9
Q ss_pred EEEEEECCCCHHHHHHHHHHHHCCCCEEEEEE-------------EECCCCCCEEE----------ECCCCEEEE----E
Q ss_conf 17999816677899999999744998078999-------------97476587560----------027815899----8
Q gi|254780307|r 3 FKVAVVGATGNVGREMLNIICERGFPISEVVA-------------LASERSAGTKV----------PFGKETIDV----Q 55 (335)
Q Consensus 3 ~kvaIiGatG~vG~el~~lL~~~~~p~~~l~~-------------~~s~~~~G~~i----------~~~~~~~~~----~ 55 (335)
-+|.|+|+ |-.|..+...|..-+.-.+.|.- +.+++.+|+.. ..-..++.+ .
T Consensus 25 s~VlIVGa-GGLGs~~a~~La~aGVG~l~ivD~D~Ve~SNL~RQ~L~~~~Dig~~k~Ka~aA~~~L~~iNp~v~I~~~~~ 103 (337)
T PRK12475 25 KHVLIIGA-GALGAANAEALVRAGIGKLTIADRDYVEWSNLQRQQLYTEEDAKQYKPKAIAAAEHLRKINSEVEIVPVVT 103 (337)
T ss_pred CCEEEECC-CHHHHHHHHHHHHCCCCEEEEEECCEECCCCCCCCCCCCHHHCCCCCHHHHHHHHHHHHHCCCCCEEEEHH
T ss_conf 96999977-77789999999982898699984998314467453002221215574889999999984499974475131
Q ss_pred ECCHHH----HCCCCEEEECCCHHHHHHHHHHH-CCCCEEEEECCCCHHCCCCCCCCCCCHHHHHHCCCCCCCEECCCCC
Q ss_conf 779436----31884786068758999999750-4565179961451001121112364101111103334312126764
Q gi|254780307|r 56 DVKSYD----FSDTDICLMSAGHAVSSQMSPKI-AANGCIVIDNSSAWRYDSDVPLIVPEVNPQTISLASRKNIIANPNC 130 (335)
Q Consensus 56 ~~~~~~----~~~~Divf~a~p~~~s~~~~~~~-~~~g~~VIDlS~~~R~~~d~p~~lPein~~~i~~~~~~~~VanPgC 130 (335)
+++++. ++++|+|+=|+.+-.++-++.++ .+.++.+|.-|. .+++-.+--.+|+-.|...-.... -..++.|
T Consensus 104 ~l~~~n~~~li~~~DlViD~tDNf~tR~liNd~c~~~~~PlV~ga~-~g~~G~~~~~~p~~tpCyrClf~~--p~~~~tC 180 (337)
T PRK12475 104 DVTVEEMEELIKEVDLIIDATDNFDTRLLINDISQKYNIPWIYGGC-VGSYGVTYTIIPGKTPCFRCLMEH--PVGGATC 180 (337)
T ss_pred CCCHHHHHHHHHHCCEEEECCCCHHHHHHHHHHHHHHCCCEEEEEE-ECCEEEEEEECCCCCCCHHHCCCC--CCCCCCC
T ss_conf 1997999999861889998888999999999999996999899887-056889998779998734115799--9989986
Q ss_pred CCCCCCCCCCHHH
Q ss_conf 3222111220011
Q gi|254780307|r 131 STIQLVVALKPLH 143 (335)
Q Consensus 131 ~at~~~l~L~PL~ 143 (335)
-..+.+-++-.+.
T Consensus 181 ~~~GVlgp~~gii 193 (337)
T PRK12475 181 DTAGIIQPAVQIV 193 (337)
T ss_pred CCCCCCCCHHHHH
T ss_conf 4577663338899
No 271
>PRK08605 D-lactate dehydrogenase; Validated
Probab=85.01 E-value=1.7 Score=22.26 Aligned_cols=76 Identities=13% Similarity=0.051 Sum_probs=45.9
Q ss_pred EEEEEECCCCHHHHHHHHHH-HHCCCCEEEEEEEECCCCCCEEEECCCCEEEEEECCHHHHCCCCEEEECCCHHHHHHHH
Q ss_conf 17999816677899999999-74499807899997476587560027815899877943631884786068758999999
Q gi|254780307|r 3 FKVAVVGATGNVGREMLNII-CERGFPISEVVALASERSAGTKVPFGKETIDVQDVKSYDFSDTDICLMSAGHAVSSQMS 81 (335)
Q Consensus 3 ~kvaIiGatG~vG~el~~lL-~~~~~p~~~l~~~~s~~~~G~~i~~~~~~~~~~~~~~~~~~~~Divf~a~p~~~s~~~~ 81 (335)
|||.+-|...+ =+..++.. +++ .+|+.+....- .. + .-....++|.+....-..+++++.
T Consensus 2 ~Ki~~~~~~~~-e~~~~~~~~~~~---~~ev~~~~~~~--------~e-e------~i~~~~~~D~i~v~~~~~i~~~vl 62 (332)
T PRK08605 2 TKIKLMSVRDE-DAPYIKAWAEKH---HVEVDLTKEAL--------TD-D------NVEEVEGFDGLSLSQQIPLSEAIY 62 (332)
T ss_pred CEEEEEECCHH-HHHHHHHHHHHC---CCEEEEECCCC--------CH-H------HHHHHCCCCEEEEECCCCCCHHHH
T ss_conf 76999827665-699999988865---90799966999--------98-9------999857998899970797799999
Q ss_pred HHHCCCCEEEEECCCC
Q ss_conf 7504565179961451
Q gi|254780307|r 82 PKIAANGCIVIDNSSA 97 (335)
Q Consensus 82 ~~~~~~g~~VIDlS~~ 97 (335)
..+.+.|+++|...+.
T Consensus 63 ~~~~~l~iK~I~r~gv 78 (332)
T PRK08605 63 KLLNELGIKQIAQRSA 78 (332)
T ss_pred HHHHHCCCEEEEECCC
T ss_conf 9666369779997772
No 272
>PRK07232 malic enzyme; Reviewed
Probab=84.86 E-value=2.8 Score=20.94 Aligned_cols=92 Identities=20% Similarity=0.276 Sum_probs=53.0
Q ss_pred EEEEEECCCCHHHHHHHHHHHHCCCCEEEEEEEECCCC--CCEEEECCC--CEEEE-EEC--CHHHHCCCCEEEE-CCCH
Q ss_conf 17999816677899999999744998078999974765--875600278--15899-877--9436318847860-6875
Q gi|254780307|r 3 FKVAVVGATGNVGREMLNIICERGFPISEVVALASERS--AGTKVPFGK--ETIDV-QDV--KSYDFSDTDICLM-SAGH 74 (335)
Q Consensus 3 ~kvaIiGatG~vG~el~~lL~~~~~p~~~l~~~~s~~~--~G~~i~~~~--~~~~~-~~~--~~~~~~~~Divf~-a~p~ 74 (335)
+||.+.|| |..|....++|..-+.+.-++....|..- .|+.-..+. ..+.. .+. -.+.+.+.|+.+- +.|+
T Consensus 187 ~kiv~~Ga-Gaa~~a~~~ll~~~G~~~~ni~~~d~~Gvi~~~r~~~~~~~k~~~a~~t~~~~l~ea~~gaDvfig~S~~~ 265 (753)
T PRK07232 187 VKIVVSGA-GAAAIACLNLLVALGAKKENIIVCDSKGVIYKGRTEGMDEWKAAYAQDTDARTLAEAIEGADVFLGLSAAG 265 (753)
T ss_pred EEEEEECC-CHHHHHHHHHHHHCCCCHHCEEEEECCCCCCCCCCCCCHHHHHHHCCCCCCCCHHHHHCCCCEEEECCCCC
T ss_conf 18999788-68889999999984998010799957786568887762499998634689886999957997899747799
Q ss_pred HHHHHHHHHHCCCCEEEEECCC
Q ss_conf 8999999750456517996145
Q gi|254780307|r 75 AVSSQMSPKIAANGCIVIDNSS 96 (335)
Q Consensus 75 ~~s~~~~~~~~~~g~~VIDlS~ 96 (335)
-.+.++++.-.+ +.+|+-++.
T Consensus 266 ~~~~~mv~~Ma~-~pivfalAN 286 (753)
T PRK07232 266 VLTPEMVKSMAD-NPIIFALAN 286 (753)
T ss_pred CCCHHHHHHHCC-CCEEEECCC
T ss_conf 789999986287-877985689
No 273
>PRK06823 ornithine cyclodeaminase; Validated
Probab=84.83 E-value=1.3 Score=22.96 Aligned_cols=20 Identities=25% Similarity=0.390 Sum_probs=14.3
Q ss_pred CCCCCCCCCEEEEEEECCEE
Q ss_conf 34322112001121102157
Q gi|254780307|r 225 PNIKVSCTAARVPVFIGHAE 244 (335)
Q Consensus 225 ~~~~v~~t~~~vPv~rG~~~ 244 (335)
.++-++.|+...|++++-+.
T Consensus 193 ADIIvtaT~s~~Pv~~~~~l 212 (315)
T PRK06823 193 ANLIVTTTPSREPLLQAEDI 212 (315)
T ss_pred CCEEEEEECCCCCCCCCCCC
T ss_conf 77479887899964165557
No 274
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=84.49 E-value=1.4 Score=22.81 Aligned_cols=14 Identities=0% Similarity=0.164 Sum_probs=4.8
Q ss_pred ECCCCCCCCCCCCC
Q ss_conf 12676432221112
Q gi|254780307|r 125 IANPNCSTIQLVVA 138 (335)
Q Consensus 125 VanPgC~at~~~l~ 138 (335)
|-..|-.+.+++.+
T Consensus 127 IlGaGGaarai~~a 140 (275)
T PRK00258 127 LLGAGGAARAVILP 140 (275)
T ss_pred EECCCCHHHHHHHH
T ss_conf 98887107999999
No 275
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=84.40 E-value=1.9 Score=22.01 Aligned_cols=30 Identities=23% Similarity=0.512 Sum_probs=22.3
Q ss_pred EEEEEECCCCHHHHHHHHHHHHCCCCEEEEEEE
Q ss_conf 179998166778999999997449980789999
Q gi|254780307|r 3 FKVAVVGATGNVGREMLNIICERGFPISEVVAL 35 (335)
Q Consensus 3 ~kvaIiGatG~vG~el~~lL~~~~~p~~~l~~~ 35 (335)
|||+|||| |..|.-+--.|.++.+ +++..+
T Consensus 1 mkV~IVGa-GiaGL~lA~~L~r~g~--i~V~V~ 30 (414)
T TIGR03219 1 LRVAIIGG-GIAGVALALNLCKHSH--LNVQLF 30 (414)
T ss_pred CEEEEECC-CHHHHHHHHHHHHCCC--CCEEEE
T ss_conf 98999994-4899999999985399--988999
No 276
>smart00829 PKS_ER Enoylreductase. Enoylreductase in Polyketide synthases.
Probab=84.33 E-value=2.5 Score=21.26 Aligned_cols=11 Identities=18% Similarity=0.033 Sum_probs=3.9
Q ss_pred HCCCCEEEECC
Q ss_conf 31884786068
Q gi|254780307|r 62 FSDTDICLMSA 72 (335)
Q Consensus 62 ~~~~Divf~a~ 72 (335)
|+--|-|+...
T Consensus 45 ~~vGdrV~~~~ 55 (288)
T smart00829 45 LAVGDRVMGLA 55 (288)
T ss_pred CCCCCEEEEEC
T ss_conf 99999999987
No 277
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=84.28 E-value=1.4 Score=22.79 Aligned_cols=29 Identities=31% Similarity=0.538 Sum_probs=24.4
Q ss_pred CC-EEEEEECCCCHHHHHHHHHHHHCCCCEE
Q ss_conf 96-1799981667789999999974499807
Q gi|254780307|r 1 MT-FKVAVVGATGNVGREMLNIICERGFPIS 30 (335)
Q Consensus 1 M~-~kvaIiGatG~vG~el~~lL~~~~~p~~ 30 (335)
|+ +.|.|+|+ |.+|.-+--.|.+++++..
T Consensus 1 M~~~DV~IvGa-G~vGl~lAl~La~~G~~V~ 30 (384)
T PRK08849 1 MNKYDIAVVGG-GMVGAATAIGFAKQGRSVA 30 (384)
T ss_pred CCCCCEEEECC-CHHHHHHHHHHHHCCCCEE
T ss_conf 98189999992-4999999999995799599
No 278
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=84.16 E-value=2.2 Score=21.57 Aligned_cols=45 Identities=22% Similarity=0.379 Sum_probs=28.5
Q ss_pred EEEEEECCCCHHHHHHHHHHHHCCCCEEEEEEEECCCCCCEEEECC
Q ss_conf 1799981667789999999974499807899997476587560027
Q gi|254780307|r 3 FKVAVVGATGNVGREMLNIICERGFPISEVVALASERSAGTKVPFG 48 (335)
Q Consensus 3 ~kvaIiGatG~vG~el~~lL~~~~~p~~~l~~~~s~~~~G~~i~~~ 48 (335)
++|||||+ |+.|-.+..-|.++.-|...+..+--..+.|.-++|.
T Consensus 2 ~~VAIIGg-G~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~G~GiaYs 46 (474)
T COG4529 2 FKVAIIGG-GFSGIYMAAHLLKSPRPSGLISIFEPRPNFGQGIAYS 46 (474)
T ss_pred CEEEEECC-CHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCC
T ss_conf 51899788-6579999999984788777567853555457875578
No 279
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating); InterPro: IPR004849 This family resembles a larger family of bacterial and eukaryotic 6-phosphogluconate dehydrogenases (Gnd) but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain Gnd, and in Aquifex aeolicus. .
Probab=84.06 E-value=2.7 Score=21.02 Aligned_cols=92 Identities=21% Similarity=0.395 Sum_probs=61.3
Q ss_pred EE-EEEECCCCHHHHHHHHHHHHCCCCEEEEEEEECCCCCCEEEECCCCEEEEEECCHHH--HCCCCEEEECCCHH-HHH
Q ss_conf 17-999816677899999999744998078999974765875600278158998779436--31884786068758-999
Q gi|254780307|r 3 FK-VAVVGATGNVGREMLNIICERGFPISEVVALASERSAGTKVPFGKETIDVQDVKSYD--FSDTDICLMSAGHA-VSS 78 (335)
Q Consensus 3 ~k-vaIiGatG~vG~el~~lL~~~~~p~~~l~~~~s~~~~G~~i~~~~~~~~~~~~~~~~--~~~~Divf~a~p~~-~s~ 78 (335)
|| +++||= |--|..|.+.|.+++| +++-.+-.+.+=+.+.-.+....+.++.+.. |..=.+|-+=.||+ ..-
T Consensus 1 MktlglIGL-GrMG~ni~~rl~~rgh---~~vgYd~~q~av~~~kG~d~~~gv~nl~E~~~~l~~Pr~vWvMVPhgnivd 76 (341)
T TIGR00872 1 MKTLGLIGL-GRMGANIAKRLADRGH---EVVGYDRDQAAVEELKGEDRAEGVANLKELLKRLSAPRVVWVMVPHGNIVD 76 (341)
T ss_pred CCEEEEECC-CHHHHHHHHHHHHCCC---EEEEECCCHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCEEEEECCCCHHHH
T ss_conf 952443133-4678999999852794---699853887999997201134300124788841799958998628736799
Q ss_pred HHHHH---HCCCCEEEEECCCCH
Q ss_conf 99975---045651799614510
Q gi|254780307|r 79 QMSPK---IAANGCIVIDNSSAW 98 (335)
Q Consensus 79 ~~~~~---~~~~g~~VIDlS~~~ 98 (335)
++... ++++|=.|||-...|
T Consensus 77 aVl~~l~p~L~kGD~vIdgGNsy 99 (341)
T TIGR00872 77 AVLRELAPLLEKGDIVIDGGNSY 99 (341)
T ss_pred HHHHHHHHHHHCCCEEEECCCCC
T ss_conf 99997666764088898278651
No 280
>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases. linked to 3D####ucture
Probab=84.05 E-value=1.8 Score=22.17 Aligned_cols=70 Identities=11% Similarity=0.169 Sum_probs=42.5
Q ss_pred EEEEEECCCCH-HHHHHHHHHH-HCCCCEEEEEEEECCCCCC-------EE-EECCCCEEEEEECC--HHHHCCCCEEEE
Q ss_conf 17999816677-8999999997-4499807899997476587-------56-00278158998779--436318847860
Q gi|254780307|r 3 FKVAVVGATGN-VGREMLNIIC-ERGFPISEVVALASERSAG-------TK-VPFGKETIDVQDVK--SYDFSDTDICLM 70 (335)
Q Consensus 3 ~kvaIiGatG~-vG~el~~lL~-~~~~p~~~l~~~~s~~~~G-------~~-i~~~~~~~~~~~~~--~~~~~~~Divf~ 70 (335)
|||+|+||-+. =..+|++-|. ...++..+|.+..-+...- +. +...+.++.+.-.. .+.++++|+||.
T Consensus 1 ~KI~iIGgGS~~ftp~li~~l~~~~~l~~~ei~L~Did~erl~~v~~l~~~~~~~~~~~~~v~~Ttd~~eAl~gADfV~~ 80 (423)
T cd05297 1 IKIAFIGAGSVVFTKNLVGDLLKTPELSGSTIALMDIDEERLETVEILAKKIVEELGAPLKIEATTDRREALDGADFVIN 80 (423)
T ss_pred CEEEEECCCHHHHHHHHHHHHHCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHCCCCEEEE
T ss_conf 97999998648759999999960845789989998899999999999999999851998189996899998468999999
Q ss_pred CC
Q ss_conf 68
Q gi|254780307|r 71 SA 72 (335)
Q Consensus 71 a~ 72 (335)
+.
T Consensus 81 ~i 82 (423)
T cd05297 81 TI 82 (423)
T ss_pred EE
T ss_conf 87
No 281
>TIGR02992 ectoine_eutC ectoine utilization protein EutC; InterPro: IPR014334 Members of this entry are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, Pseudomonas putida and Sinorhizobium meliloti 1021, where it is known to be induced by ectoine). Members belong to the ornithine cyclodeaminase/mu-crystallin family..
Probab=83.91 E-value=0.57 Score=25.15 Aligned_cols=106 Identities=21% Similarity=0.260 Sum_probs=61.7
Q ss_pred EEEEECCCCHHHH-HHHHHHHHCCCCEEEEEEEECCCCCCEEE--ECCC-CEEEEEECC--HHHHCCCCEEEECCCHHHH
Q ss_conf 7999816677899-99999974499807899997476587560--0278-158998779--4363188478606875899
Q gi|254780307|r 4 KVAVVGATGNVGR-EMLNIICERGFPISEVVALASERSAGTKV--PFGK-ETIDVQDVK--SYDFSDTDICLMSAGHAVS 77 (335)
Q Consensus 4 kvaIiGatG~vG~-el~~lL~~~~~p~~~l~~~~s~~~~G~~i--~~~~-~~~~~~~~~--~~~~~~~Divf~a~p~~~s 77 (335)
.+||+|| |+=-+ +|--|+.-| |.-+..-++-+...-+.. .+.. --+.+.-.+ ....++.||++.|+|++.
T Consensus 131 ~~a~~GA-G~QArLQL~AL~LvR--dI~~ariWAR~~akAe~~A~~L~~~~G~~v~a~td~~~A~~~ADI~vTtTP~~~- 206 (326)
T TIGR02992 131 VVAILGA-GMQARLQLEALTLVR--DIRSARIWARDSAKAEALALQLSSELGIDVTAATDVRAALSGADIIVTTTPSET- 206 (326)
T ss_pred HHHHHCC-CHHHHHHHHHHHHCC--CHHHHHHHCCCHHHHHHHHHHHHHHCCEEEEECCCHHHHCCCCCEEEECCCCCC-
T ss_conf 7767525-567899999986315--214432102556789999999887469068750476862366887987487987-
Q ss_pred HHHHHHHCCCCEEEEECCCCHHCCCCCCCCCCCHHHHHHCCCC
Q ss_conf 9999750456517996145100112111236410111110333
Q gi|254780307|r 78 SQMSPKIAANGCIVIDNSSAWRYDSDVPLIVPEVNPQTISLAS 120 (335)
Q Consensus 78 ~~~~~~~~~~g~~VIDlS~~~R~~~d~p~~lPein~~~i~~~~ 120 (335)
.=+-.++++.|-.|+=+.||-.=+. ||.|+.+...+
T Consensus 207 Pvl~a~wL~pGqh~tAMGsD~EHKn-------E~~P~~~a~a~ 242 (326)
T TIGR02992 207 PVLKAEWLEPGQHVTAMGSDAEHKN-------EIDPAVIAKAD 242 (326)
T ss_pred CCHHHHHCCCCCEEEEECCCCCCCC-------CCCHHHHHHHH
T ss_conf 3020733678878986067701223-------43647885411
No 282
>PRK06101 short chain dehydrogenase; Provisional
Probab=83.85 E-value=2.8 Score=20.91 Aligned_cols=33 Identities=30% Similarity=0.535 Sum_probs=25.8
Q ss_pred CCEEEEEECCCCHHHHHHHHHHHHCCCCEEEEEEEEC
Q ss_conf 9617999816677899999999744998078999974
Q gi|254780307|r 1 MTFKVAVVGATGNVGREMLNIICERGFPISEVVALAS 37 (335)
Q Consensus 1 M~~kvaIiGatG~vG~el~~lL~~~~~p~~~l~~~~s 37 (335)
|| .|-|.|||+=+|+++.+.|.++++ ++...+-
T Consensus 1 Mk-tvlITGassGIG~a~A~~la~~G~---~Vi~~~R 33 (241)
T PRK06101 1 MT-SVLITGATSGIGKQLALDYAKAGW---KVIACGR 33 (241)
T ss_pred CC-EEEEECCCHHHHHHHHHHHHHCCC---EEEEEEC
T ss_conf 99-899922404999999999998799---8999989
No 283
>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC; InterPro: IPR014308 Members of this protein are the accessory protein XdhC, found in baceria, that is responsible for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products..
Probab=83.78 E-value=2.1 Score=21.76 Aligned_cols=35 Identities=29% Similarity=0.490 Sum_probs=30.2
Q ss_pred EEEEEECCCCHHHHHHHHHHHHCCCCEEEEEEEECCCC
Q ss_conf 17999816677899999999744998078999974765
Q gi|254780307|r 3 FKVAVVGATGNVGREMLNIICERGFPISEVVALASERS 40 (335)
Q Consensus 3 ~kvaIiGatG~vG~el~~lL~~~~~p~~~l~~~~s~~~ 40 (335)
+.|.|-|| |=||++|++.|+ ..|.++|..+.+..+
T Consensus 116 ~~v~lFGA-GHVG~ALv~~La--~lP~~~~~WvD~Re~ 150 (270)
T TIGR02964 116 PHVVLFGA-GHVGRALVRALA--PLPECRVTWVDSREE 150 (270)
T ss_pred CEEEEECC-CHHHHHHHHHHC--CCCCEEEEEEECCHH
T ss_conf 81799867-718889999861--699579998637155
No 284
>KOG1276 consensus
Probab=83.76 E-value=3.1 Score=20.66 Aligned_cols=44 Identities=27% Similarity=0.210 Sum_probs=33.9
Q ss_pred CCEEEEEECCCCHHHHHHHHHHHHCCCCEEEEEEE-ECCCCCCEEEE
Q ss_conf 96179998166778999999997449980789999-74765875600
Q gi|254780307|r 1 MTFKVAVVGATGNVGREMLNIICERGFPISEVVAL-ASERSAGTKVP 46 (335)
Q Consensus 1 M~~kvaIiGatG~vG~el~~lL~~~~~p~~~l~~~-~s~~~~G~~i~ 46 (335)
|.|+|||+|+ |.-|...-.-|.+ -+|..++..+ ++++-.|+-.+
T Consensus 10 ~~~~vaVvGG-GiSGL~aay~L~r-~~p~~~i~l~Ea~~RvGGwirS 54 (491)
T KOG1276 10 SGMTVAVVGG-GISGLCAAYYLAR-LGPDVTITLFEASPRVGGWIRS 54 (491)
T ss_pred ECCEEEEECC-CHHHHHHHHHHHH-CCCCCEEEEEECCCCCCCEEEE
T ss_conf 0666999888-5368899999985-4899559998427866652563
No 285
>COG1105 FruK Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) [Carbohydrate transport and metabolism]
Probab=83.63 E-value=3.2 Score=20.62 Aligned_cols=139 Identities=14% Similarity=0.336 Sum_probs=66.0
Q ss_pred EEEECCCCHHHHHHHHHHHHCCCCEEEEEEEECCCC---------CCEEEECCCCEEEE--EECCHH-----H-HCCCCE
Q ss_conf 999816677899999999744998078999974765---------87560027815899--877943-----6-318847
Q gi|254780307|r 5 VAVVGATGNVGREMLNIICERGFPISEVVALASERS---------AGTKVPFGKETIDV--QDVKSY-----D-FSDTDI 67 (335)
Q Consensus 5 vaIiGatG~vG~el~~lL~~~~~p~~~l~~~~s~~~---------~G~~i~~~~~~~~~--~~~~~~-----~-~~~~Di 67 (335)
.+++| |+.|.-+.++|.+++.|.. ...+..+.. .|+...+++.-..+ ++++.+ . ....|+
T Consensus 56 ~GflG--g~tg~~~~~~l~~~gi~~~-fv~v~g~TRinvki~~~~~~~~Tein~~Gp~is~~~~~~~l~~~~~~l~~~d~ 132 (310)
T COG1105 56 LGFLG--GFTGEFFVALLKDEGIPDA-FVEVKGDTRINVKILDEEDGEETEINFPGPEISEAELEQFLEQLKALLESDDI 132 (310)
T ss_pred EEECC--CCCHHHHHHHHHHCCCCCE-EEECCCCCEEEEEEEECCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCE
T ss_conf 99668--8657899999876389830-79905887356999717888468704889988999999999999975664889
Q ss_pred EEECC------CHHHHHHHHHHHCCCCE-EEEECCCCHHC---CCCCCCCCCCHHHHHHCCCCCCCEECCCCCCCCCCCC
Q ss_conf 86068------75899999975045651-79961451001---1211123641011111033343121267643222111
Q gi|254780307|r 68 CLMSA------GHAVSSQMSPKIAANGC-IVIDNSSAWRY---DSDVPLIVPEVNPQTISLASRKNIIANPNCSTIQLVV 137 (335)
Q Consensus 68 vf~a~------p~~~s~~~~~~~~~~g~-~VIDlS~~~R~---~~d~p~~lPein~~~i~~~~~~~~VanPgC~at~~~l 137 (335)
|.+|. |.+.-.++...+.+.|. .++|.|++.=. +.. |..+ --|.+.+...-...+-+.. -..-
T Consensus 133 VvlsGSlP~g~~~d~y~~li~~~~~~g~~vilD~Sg~~L~~~L~~~-P~lI-KPN~~EL~~~~g~~~~~~~-----d~~~ 205 (310)
T COG1105 133 VVLSGSLPPGVPPDAYAELIRILRQQGAKVILDTSGEALLAALEAK-PWLI-KPNREELEALFGRELTTLE-----DVIK 205 (310)
T ss_pred EEEECCCCCCCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHCCC-CCEE-ECCHHHHHHHHCCCCCCHH-----HHHH
T ss_conf 9990889999997999999999986598399979859999987079-9389-4588999999689889748-----8999
Q ss_pred CCCHHHHCCCCCCEEEE
Q ss_conf 22001101787411465
Q gi|254780307|r 138 ALKPLHDLAMIKRVVVT 154 (335)
Q Consensus 138 ~L~PL~~~~~i~~v~v~ 154 (335)
+.+-| ...++++|+|+
T Consensus 206 ~a~~l-~~~g~~~ViVS 221 (310)
T COG1105 206 AAREL-LAEGIENVIVS 221 (310)
T ss_pred HHHHH-HHCCCCEEEEE
T ss_conf 99999-87799889997
No 286
>cd02191 FtsZ FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes. FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.
Probab=83.59 E-value=3.2 Score=20.61 Aligned_cols=98 Identities=15% Similarity=0.254 Sum_probs=58.9
Q ss_pred EEEEECCCCHHHHHHHHHHHHCCCCEEEEEEEECCCCCC------EEEECCCCEE---------E------EEECCH--H
Q ss_conf 799981667789999999974499807899997476587------5600278158---------9------987794--3
Q gi|254780307|r 4 KVAVVGATGNVGREMLNIICERGFPISEVVALASERSAG------TKVPFGKETI---------D------VQDVKS--Y 60 (335)
Q Consensus 4 kvaIiGatG~vG~el~~lL~~~~~p~~~l~~~~s~~~~G------~~i~~~~~~~---------~------~~~~~~--~ 60 (335)
||.|+|- |=.|...+..|.+.+...+++.++-++..+= .++..+.+.. . .++.++ .
T Consensus 2 kI~ViGv-GGaG~N~v~~m~~~~~~~v~~iaiNTD~~~L~~~~a~~ki~iG~~~t~G~GaG~~pe~G~~aA~e~~~~I~~ 80 (303)
T cd02191 2 KIAVIGF-GGAGGNIVDKFLEYDKEGRSAVAVNTDAQDLLGLEAENRVLIGQARTKGLGAGANPELGAEAAEEVQEAIDN 80 (303)
T ss_pred CEEEEEE-CCCHHHHHHHHHHCCCCCEEEEEEECCHHHHHCCCCCCEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 1899987-881399999999829997179999576999835999828972766668898988945899999999999999
Q ss_pred HHCCCCEEEECC------CHHHHHHHHHHHCCCCEEEEEC-CCCHHCCC
Q ss_conf 631884786068------7589999997504565179961-45100112
Q gi|254780307|r 61 DFSDTDICLMSA------GHAVSSQMSPKIAANGCIVIDN-SSAWRYDS 102 (335)
Q Consensus 61 ~~~~~Divf~a~------p~~~s~~~~~~~~~~g~~VIDl-S~~~R~~~ 102 (335)
.+.+.|+||.++ +++.+.-+++.+.+.|+.+|-. .-.|+++-
T Consensus 81 ~l~~~d~vfi~AGmGGGTGtGaaPviA~~Ake~g~ltvavVt~PF~~EG 129 (303)
T cd02191 81 IPVHVDMVFITAGLGGGTGTGGAPVVAEHLKRIGTLTVAVVTLPFSDEG 129 (303)
T ss_pred HHCCCCEEEEEEECCCCCCCCHHHHHHHHHHHCCCCEEEEEECCHHHHH
T ss_conf 8656998999984189700428999999999759938999978725511
No 287
>PRK08618 ornithine cyclodeaminase; Validated
Probab=83.35 E-value=1.6 Score=22.38 Aligned_cols=18 Identities=39% Similarity=0.604 Sum_probs=12.5
Q ss_pred CCCCCCCCCEEEEEEECC
Q ss_conf 343221120011211021
Q gi|254780307|r 225 PNIKVSCTAARVPVFIGH 242 (335)
Q Consensus 225 ~~~~v~~t~~~vPv~rG~ 242 (335)
.++-++.|+..-|+|.+.
T Consensus 193 aDiV~taT~s~~Pv~~~~ 210 (325)
T PRK08618 193 ADIIVTVTNAKTPVFSEK 210 (325)
T ss_pred CCEEEEECCCCCCCCCCC
T ss_conf 988999259998644543
No 288
>PRK13243 glyoxylate reductase; Reviewed
Probab=82.68 E-value=1.3 Score=23.07 Aligned_cols=72 Identities=14% Similarity=0.202 Sum_probs=43.8
Q ss_pred CCEEEEEECCCCHHHHHHHHHHHHCCCCEEEEEEEECCCCCCEEEECCCCEEEEEECCHH----HHCCCCEEEECCCHHH
Q ss_conf 961799981667789999999974499807899997476587560027815899877943----6318847860687589
Q gi|254780307|r 1 MTFKVAVVGATGNVGREMLNIICERGFPISEVVALASERSAGTKVPFGKETIDVQDVKSY----DFSDTDICLMSAGHAV 76 (335)
Q Consensus 1 M~~kvaIiGatG~vG~el~~lL~~~~~p~~~l~~~~s~~~~G~~i~~~~~~~~~~~~~~~----~~~~~Divf~a~p~~~ 76 (335)
|+-||-|.+. +-.+-+++|.++ +++......+ +++.+ ...++|.++.......
T Consensus 1 Mk~Kvlvt~~---i~~~~~~~L~~~----~~v~~~~~~~----------------~~~~~~l~~~i~~~d~li~~~~~~i 57 (333)
T PRK13243 1 MKPRVFITRE---IPENGIEMLEEH----FEVEVWEDER----------------EIPREVLLEKVKDVDALVTMLSERI 57 (333)
T ss_pred CCCEEEEECC---CCHHHHHHHHHC----CCEEEECCCC----------------CCCHHHHHHHHCCCCEEEECCCCCC
T ss_conf 9978999698---899999999717----9599926999----------------9999999998679829998588858
Q ss_pred HHHHHHHHCCCCEEEEECCCC
Q ss_conf 999997504565179961451
Q gi|254780307|r 77 SSQMSPKIAANGCIVIDNSSA 97 (335)
Q Consensus 77 s~~~~~~~~~~g~~VIDlS~~ 97 (335)
++++.+++. ..++|...+.
T Consensus 58 ~~~~l~~ap--~LK~I~~~gv 76 (333)
T PRK13243 58 DAEVFEAAP--RLRIVANYAV 76 (333)
T ss_pred CHHHHHCCC--CCEEEEECCC
T ss_conf 899994699--9809988574
No 289
>PRK06141 ornithine cyclodeaminase; Validated
Probab=82.48 E-value=1.9 Score=22.03 Aligned_cols=21 Identities=29% Similarity=0.344 Sum_probs=14.0
Q ss_pred ECCHHHHHHHHHHHHHHHHHHHC
Q ss_conf 01302236799999999988539
Q gi|254780307|r 313 ANNLRKGAALNAVQIAELVAQEA 335 (335)
Q Consensus 313 ~DNL~kGAAg~AVq~anlm~~~~ 335 (335)
.+++ |-|.|=+..++++.+++
T Consensus 291 fksv--G~a~~Dla~A~~vy~k~ 311 (313)
T PRK06141 291 FKSV--GTALEDLAAAILVYEAL 311 (313)
T ss_pred EECC--CHHHHHHHHHHHHHHHH
T ss_conf 9799--86999999999999985
No 290
>PRK06182 short chain dehydrogenase; Validated
Probab=82.44 E-value=3.5 Score=20.34 Aligned_cols=29 Identities=34% Similarity=0.625 Sum_probs=23.7
Q ss_pred CCEEEEEE-CCCCHHHHHHHHHHHHCCCCE
Q ss_conf 96179998-166778999999997449980
Q gi|254780307|r 1 MTFKVAVV-GATGNVGREMLNIICERGFPI 29 (335)
Q Consensus 1 M~~kvaIi-GatG~vG~el~~lL~~~~~p~ 29 (335)
|+=|+++| ||++=+|+++.+.|.++++..
T Consensus 1 mk~Kv~lITGassGIG~a~a~~la~~G~~V 30 (273)
T PRK06182 1 MKKKVALVTGASSGIGKATARKLIAEGFTV 30 (273)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHHCCCEE
T ss_conf 946989990632099999999999879989
No 291
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=82.43 E-value=2.5 Score=21.25 Aligned_cols=35 Identities=20% Similarity=0.308 Sum_probs=25.2
Q ss_pred CC-EEEEEECCCCHHHHHHHHHHHHCCCCEEEEEEEE
Q ss_conf 96-1799981667789999999974499807899997
Q gi|254780307|r 1 MT-FKVAVVGATGNVGREMLNIICERGFPISEVVALA 36 (335)
Q Consensus 1 M~-~kvaIiGatG~vG~el~~lL~~~~~p~~~l~~~~ 36 (335)
|+ +.|.|+|+ |.+|.-+--.|.+..+..+.+..+.
T Consensus 1 M~~~DV~IvGa-Gp~Gl~lAl~L~~~g~~~~~v~viE 36 (395)
T PRK05732 1 MSRMDVIIVGG-GMAGATLALALSRLSHGRLPVALIE 36 (395)
T ss_pred CCCCCEEEECC-CHHHHHHHHHHHHCCCCCCEEEEEE
T ss_conf 97189899993-8999999999996188997499993
No 292
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=82.34 E-value=3.5 Score=20.38 Aligned_cols=26 Identities=27% Similarity=0.492 Sum_probs=21.9
Q ss_pred EEEEEECCCCHHHHHHHHHHHHCCCCE
Q ss_conf 179998166778999999997449980
Q gi|254780307|r 3 FKVAVVGATGNVGREMLNIICERGFPI 29 (335)
Q Consensus 3 ~kvaIiGatG~vG~el~~lL~~~~~p~ 29 (335)
|||.|||+ |.+|.-.---|.++++.+
T Consensus 1 m~VvIIGa-Gi~G~stA~~La~~G~~V 26 (416)
T PRK00711 1 MRVVVLGS-GVVGVTSAWYLARAGHEV 26 (416)
T ss_pred CEEEEECC-HHHHHHHHHHHHHCCCCE
T ss_conf 97999994-499999999999689968
No 293
>PRK13984 putative oxidoreductase; Provisional
Probab=82.24 E-value=3.6 Score=20.29 Aligned_cols=40 Identities=30% Similarity=0.422 Sum_probs=27.7
Q ss_pred EEEEEECCCCHHHHHHHHHHHHCCCCEEEEEEEECCCCCCEEEE
Q ss_conf 17999816677899999999744998078999974765875600
Q gi|254780307|r 3 FKVAVVGATGNVGREMLNIICERGFPISEVVALASERSAGTKVP 46 (335)
Q Consensus 3 ~kvaIiGatG~vG~el~~lL~~~~~p~~~l~~~~s~~~~G~~i~ 46 (335)
-||||||+ |=.|..--.-|...+| ++..+-.....|=.+.
T Consensus 284 KKVAVIGs-GPAGLaaA~~Lar~Gh---~VtVFE~~~~~GGlL~ 323 (604)
T PRK13984 284 KKVAIVGS-GPAGLSAAYFLATMGY---EVEVYESLSKPGGVMR 323 (604)
T ss_pred CEEEEECC-CHHHHHHHHHHHHCCC---EEEEECCCCCCCCEEE
T ss_conf 98999898-6899999999998698---6899745677897233
No 294
>cd05295 MDH_like Malate dehydrogenase-like. These MDH-like proteins are related to other groups in the MDH family but do not have conserved substrate and cofactor binding residues. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subgroup are uncharacterized MDH-like proteins from animals. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=82.18 E-value=3.4 Score=20.45 Aligned_cols=69 Identities=12% Similarity=0.121 Sum_probs=44.6
Q ss_pred EEEEEECCCCHHHHHHHHHHHHCC----CCEEEEEEEECCCCCCEE----EEC------CCCEEEEEECCHHHHCCCCEE
Q ss_conf 179998166778999999997449----980789999747658756----002------781589987794363188478
Q gi|254780307|r 3 FKVAVVGATGNVGREMLNIICERG----FPISEVVALASERSAGTK----VPF------GKETIDVQDVKSYDFSDTDIC 68 (335)
Q Consensus 3 ~kvaIiGatG~vG~el~~lL~~~~----~p~~~l~~~~s~~~~G~~----i~~------~~~~~~~~~~~~~~~~~~Div 68 (335)
++|+|.||+|.+.-.|+-+|.+-+ ...+.|.++..+...... .+. .-+.+.+.+-.++.|.++|++
T Consensus 124 l~V~VTgAag~iaYsLi~~lasGevFG~d~~i~L~LlDip~~~e~L~Gv~MELeDcAfPlL~~v~~t~d~~~AF~dad~a 203 (452)
T cd05295 124 LQVCITNASAPLCYHLIPSLASGEVFGMEEEISIHLLDSPENLEKLKGLVMEVEDLAFPLLRGISVTTDLDVAFKDAHVI 203 (452)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCCCCCCEEEEEECCCHHHHHHHHCHHHHHHHHCCCCCCCEEEECCHHHHHCCCCEE
T ss_conf 46999468447689999997376734898717999547740778863633567653440017106767999985579889
Q ss_pred EEC
Q ss_conf 606
Q gi|254780307|r 69 LMS 71 (335)
Q Consensus 69 f~a 71 (335)
|+-
T Consensus 204 ilv 206 (452)
T cd05295 204 VLL 206 (452)
T ss_pred EEE
T ss_conf 995
No 295
>COG1486 CelF Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=82.14 E-value=3.1 Score=20.72 Aligned_cols=72 Identities=13% Similarity=0.253 Sum_probs=40.8
Q ss_pred CCEEEEEECC-CCHHHHHHHH-HHHHCCCCEEEEEEEECCCCCCEE--------EECCCCEEEEEECC--HHHHCCCCEE
Q ss_conf 9617999816-6778999999-997449980789999747658756--------00278158998779--4363188478
Q gi|254780307|r 1 MTFKVAVVGA-TGNVGREMLN-IICERGFPISEVVALASERSAGTK--------VPFGKETIDVQDVK--SYDFSDTDIC 68 (335)
Q Consensus 1 M~~kvaIiGa-tG~vG~el~~-lL~~~~~p~~~l~~~~s~~~~G~~--------i~~~~~~~~~~~~~--~~~~~~~Div 68 (335)
|++||+|+|+ |-|+-.-++- ++....+|..++.+..-+...-+- +...+.+..+.-.. .+.+.++|+|
T Consensus 2 ~~~KI~iIGgGSt~tp~~v~g~l~~~e~l~~~ei~L~Did~~r~~~i~~~~~~~v~~~g~~~kv~~ttd~~eAl~gAdfV 81 (442)
T COG1486 2 KKFKIVIIGGGSTYTPKLLLGDLARTEELPVRELALYDIDEERLKIIAILAKKLVEEAGAPVKVEATTDRREALEGADFV 81 (442)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHCCCCEE
T ss_conf 97369998997531479999898417557766699983877889999999999999639985899945899984479889
Q ss_pred EECC
Q ss_conf 6068
Q gi|254780307|r 69 LMSA 72 (335)
Q Consensus 69 f~a~ 72 (335)
+.+.
T Consensus 82 i~~~ 85 (442)
T COG1486 82 ITQI 85 (442)
T ss_pred EEEE
T ss_conf 9987
No 296
>PRK07236 hypothetical protein; Provisional
Probab=82.01 E-value=1.9 Score=22.04 Aligned_cols=26 Identities=23% Similarity=0.326 Sum_probs=22.5
Q ss_pred EEEEEECCCCHHHHHHHHHHHHCCCCE
Q ss_conf 179998166778999999997449980
Q gi|254780307|r 3 FKVAVVGATGNVGREMLNIICERGFPI 29 (335)
Q Consensus 3 ~kvaIiGatG~vG~el~~lL~~~~~p~ 29 (335)
-||.|||| |.+|.-+-..|.+++|+.
T Consensus 7 ~kV~IVGa-GiaGL~~A~~L~~~G~~v 32 (386)
T PRK07236 7 PRAVVVGG-SLGGLFAANLLRRAGWDV 32 (386)
T ss_pred CCEEEECC-CHHHHHHHHHHHHCCCCE
T ss_conf 96899993-689999999998589998
No 297
>PRK10637 cysG siroheme synthase; Provisional
Probab=81.77 E-value=3.7 Score=20.19 Aligned_cols=93 Identities=14% Similarity=0.132 Sum_probs=53.9
Q ss_pred EEEEEECCCCHHHHHHHHHHHHCCCCEEEEEEEECCCCCC-EEEECCCC-EEEEEECCHHHHCCCCEEEECCCHH-HHHH
Q ss_conf 1799981667789999999974499807899997476587-56002781-5899877943631884786068758-9999
Q gi|254780307|r 3 FKVAVVGATGNVGREMLNIICERGFPISEVVALASERSAG-TKVPFGKE-TIDVQDVKSYDFSDTDICLMSAGHA-VSSQ 79 (335)
Q Consensus 3 ~kvaIiGatG~vG~el~~lL~~~~~p~~~l~~~~s~~~~G-~~i~~~~~-~~~~~~~~~~~~~~~Divf~a~p~~-~s~~ 79 (335)
-+|-|+|+ |-++.+=+++|.+.+ .. +..++-+-... +.....+. .+.-...++.++.++++||.|+.+. ..+.
T Consensus 13 k~vLVVGG-G~vA~rK~~~Ll~ag-A~--VtViap~~~~~l~~l~~~g~i~~~~r~f~~~dL~g~~LViaATdd~~vn~~ 88 (457)
T PRK10637 13 RDCLIVGG-GDVAERKARLLLDAG-AR--LTVNALAFIPQFTAWADAGMLTLVEGPFDESLLDTCWLAIAATDDDAVNQR 88 (457)
T ss_pred CEEEEECC-CHHHHHHHHHHHHCC-CE--EEEECCCCCHHHHHHHHCCCEEEEECCCCHHHHCCCEEEEEECCCHHHHHH
T ss_conf 86999899-899999999998789-87--999899899899999866982899678996883895199990699999999
Q ss_pred HHHHHCCCCE--EEEECC--CCHH
Q ss_conf 9975045651--799614--5100
Q gi|254780307|r 80 MSPKIAANGC--IVIDNS--SAWR 99 (335)
Q Consensus 80 ~~~~~~~~g~--~VIDlS--~~~R 99 (335)
+.....+.|+ -|+|.. ++|-
T Consensus 89 i~~~a~~~~ilVNvvD~p~lcdF~ 112 (457)
T PRK10637 89 VSEAAEARRIFCNVVDAPKAASFI 112 (457)
T ss_pred HHHHHHHCCCEEEECCCCCCCCCC
T ss_conf 999999829868845882448744
No 298
>TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase; InterPro: IPR005888 The conversion of dTDP-glucose into dTDP-4-keto-6-deoxyglucose by Escherichia coli dTDP-glucose 4,6-dehydratase) takes place in the active site in three steps: dehydrogenation to dTDP-4-ketoglucose, dehydration to dTDP-4-ketoglucose-5,6-ene, and rereduction of C6 to the methyl group. The 4,6-dehydratase makes use of tightly bound NAD^+ as the coenzyme for transiently oxidizing the substrate, activating it for the dehydration step . This and other 4,6-dehydratases catalyze the first committed step in all 6-deoxysugar biosynthetic pathways described to date. Numerous 6-deoxysugars are used in bacterial lipopolysaccharide production as well as in the biosynthesis of a diverse array of secondary metabolites.; GO: 0008460 dTDP-glucose 46-dehydratase activity, 0009225 nucleotide-sugar metabolic process.
Probab=81.68 E-value=1.2 Score=23.18 Aligned_cols=38 Identities=32% Similarity=0.549 Sum_probs=26.2
Q ss_pred EEEEECCCCHHHHHHHHHH-HHCCCCEEEEEEEECCCCCCE
Q ss_conf 7999816677899999999-744998078999974765875
Q gi|254780307|r 4 KVAVVGATGNVGREMLNII-CERGFPISEVVALASERSAGT 43 (335)
Q Consensus 4 kvaIiGatG~vG~el~~lL-~~~~~p~~~l~~~~s~~~~G~ 43 (335)
|+-|-|+.|++|..|+|.+ .+| |..++.-+..=.-||.
T Consensus 1 ~~LVTGGaGFIGsnFvry~~~~~--~D~~v~vlDkLTYAgn 39 (340)
T TIGR01181 1 RILVTGGAGFIGSNFVRYILNEH--PDAEVIVLDKLTYAGN 39 (340)
T ss_pred CCEEECCCCHHHHHHHHHHHHHC--CCCEEEEEECCCCCCC
T ss_conf 92363278525689999999747--9957998635445578
No 299
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=81.64 E-value=3.8 Score=20.16 Aligned_cols=22 Identities=32% Similarity=0.454 Sum_probs=11.6
Q ss_pred EEEEECCCCHHHHHHHHHHHHC
Q ss_conf 7999816677899999999744
Q gi|254780307|r 4 KVAVVGATGNVGREMLNIICER 25 (335)
Q Consensus 4 kvaIiGatG~vG~el~~lL~~~ 25 (335)
+|-|.||+|-||.-.+|+....
T Consensus 145 ~VLv~gaaGgVG~~aiQlAk~~ 166 (326)
T COG0604 145 TVLVHGAAGGVGSAAIQLAKAL 166 (326)
T ss_pred EEEEECCCCHHHHHHHHHHHHC
T ss_conf 7999778546999999999984
No 300
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=81.64 E-value=2.4 Score=21.33 Aligned_cols=28 Identities=29% Similarity=0.523 Sum_probs=23.6
Q ss_pred CCEEEEEECCCCHHHHHHHHHHHHCCCCE
Q ss_conf 96179998166778999999997449980
Q gi|254780307|r 1 MTFKVAVVGATGNVGREMLNIICERGFPI 29 (335)
Q Consensus 1 M~~kvaIiGatG~vG~el~~lL~~~~~p~ 29 (335)
|.++|+|+|+ |.+|.-+--.|.++++.+
T Consensus 1 ~~~dV~IvGa-G~aGl~lA~~L~~~G~~V 28 (387)
T COG0654 1 KMLDVAIVGA-GPAGLALALALARAGLDV 28 (387)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCCCCE
T ss_conf 9854999997-899999999998289968
No 301
>PRK06436 glycerate dehydrogenase; Provisional
Probab=81.63 E-value=3.8 Score=20.15 Aligned_cols=14 Identities=7% Similarity=0.240 Sum_probs=8.7
Q ss_pred CCHHHHHHHHHHCC
Q ss_conf 87899987310069
Q gi|254780307|r 254 ISIKDAVAAINKSK 267 (335)
Q Consensus 254 ~~~~~i~~~~~~~~ 267 (335)
++.+++.+++++..
T Consensus 214 Vde~aL~~aL~~g~ 227 (303)
T PRK06436 214 VDKNDMLNFLRNHN 227 (303)
T ss_pred ECHHHHHHHHHHCC
T ss_conf 68999999998199
No 302
>PRK09126 hypothetical protein; Provisional
Probab=81.62 E-value=2.1 Score=21.75 Aligned_cols=29 Identities=28% Similarity=0.502 Sum_probs=24.7
Q ss_pred CCEEEEEECCCCHHHHHHHHHHHHCCCCEE
Q ss_conf 961799981667789999999974499807
Q gi|254780307|r 1 MTFKVAVVGATGNVGREMLNIICERGFPIS 30 (335)
Q Consensus 1 M~~kvaIiGatG~vG~el~~lL~~~~~p~~ 30 (335)
|.+.|.|+|| |.+|.-+--.|.+++++..
T Consensus 2 m~~DV~IvGa-Gp~Gl~lA~~La~~G~~v~ 30 (392)
T PRK09126 2 MHSDILVVGA-GPAGLSFARSLAGSGLKVT 30 (392)
T ss_pred CCCCEEEECC-CHHHHHHHHHHHHCCCCEE
T ss_conf 9899999992-5899999999986899899
No 303
>cd05568 PTS_IIB_bgl_like PTS_IIB_bgl_like: the PTS (phosphotransferase system) IIB domain of a family of sensory systems composed of a membrane-bound sugar-sensor (similar to BglF) and a transcription antiterminator (similar to BglG) which regulate expression of genes involved in sugar utilization. The domain architecture of the IIB-containing protein includes a region N-terminal to the IIB domain which is homologous to the BglG transcription antiterminator with an RNA-binding domain followed by two homologous domains, PRD1 and PRD2 (PTS Regulation Domains). C-terminal to the IIB domain is a domain similar to the PTS IIA domain. In this system, the BglG-like region and the IIB and IIA-like domains are all expressed together as a single multidomain protein. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include this sensory system with similarity to the bacterial
Probab=81.04 E-value=2.1 Score=21.77 Aligned_cols=69 Identities=22% Similarity=0.233 Sum_probs=44.9
Q ss_pred EEEEEECCCCHHHHHHHHHHHHCCCCEEEEEEEECCCCCCEEEECCCCEEEEEECCHHHHCCCCEEEECCCHHHHHHHHH
Q ss_conf 17999816677899999999744998078999974765875600278158998779436318847860687589999997
Q gi|254780307|r 3 FKVAVVGATGNVGREMLNIICERGFPISEVVALASERSAGTKVPFGKETIDVQDVKSYDFSDTDICLMSAGHAVSSQMSP 82 (335)
Q Consensus 3 ~kvaIiGatG~vG~el~~lL~~~~~p~~~l~~~~s~~~~G~~i~~~~~~~~~~~~~~~~~~~~Divf~a~p~~~s~~~~~ 82 (335)
+|+.|+-.+|+.-.+|++.-.++.||..++....|. .+++..++.++|++|+..|-.
T Consensus 1 ~~vliVC~~G~gts~lL~~kl~~~fp~i~~i~~~s~----------------~~~~~~~~~~~DlIiSTi~l~------- 57 (85)
T cd05568 1 KKALVVCPSGIGTSRLLKSKLKKLFPEIEIIDVISL----------------RELEEVDLDDYDLIISTVPLE------- 57 (85)
T ss_pred CEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEEECH----------------HHHHHCCCCCCCEEEEECCCC-------
T ss_conf 939999999989999999999987899679997509----------------998743323687899941266-------
Q ss_pred HHCCCCEEEEECCCC
Q ss_conf 504565179961451
Q gi|254780307|r 83 KIAANGCIVIDNSSA 97 (335)
Q Consensus 83 ~~~~~g~~VIDlS~~ 97 (335)
..+..||=.|.-
T Consensus 58 ---~~~~pvi~Vsp~ 69 (85)
T cd05568 58 ---DTDKPVIVVSPI 69 (85)
T ss_pred ---CCCCCEEEECCC
T ss_conf ---578767998688
No 304
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=80.75 E-value=2 Score=21.78 Aligned_cols=69 Identities=17% Similarity=0.246 Sum_probs=37.5
Q ss_pred EEEEECCCCHHHHHHHHHHHHCCCCEEEEEEEECCCCCCEEE----ECCCCEEEEEECCHHHHCCCCEEEECCCHHH
Q ss_conf 799981667789999999974499807899997476587560----0278158998779436318847860687589
Q gi|254780307|r 4 KVAVVGATGNVGREMLNIICERGFPISEVVALASERSAGTKV----PFGKETIDVQDVKSYDFSDTDICLMSAGHAV 76 (335)
Q Consensus 4 kvaIiGatG~vG~el~~lL~~~~~p~~~l~~~~s~~~~G~~i----~~~~~~~~~~~~~~~~~~~~Divf~a~p~~~ 76 (335)
+|.|+|+ |=+++-.+.-|.+.+. -++..+.-+......+ ..........+.. ....++|+++-|+|-+.
T Consensus 21 ~vlIlGa-GGaarai~~aL~~~g~--~~I~i~nR~~~r~~~l~~~~~~~~~~~~~~~~~-~~~~~~dliIN~tp~G~ 93 (155)
T cd01065 21 KVLILGA-GGAARAVAYALAELGA--AKIVIVNRTLEKAKALAERFGELGIAIAYLDLE-ELLAEADLIINTTPVGM 93 (155)
T ss_pred EEEEECC-CHHHHHHHHHHHHCCC--CEEEEEECCHHHHHHHHHHHHHCCCCEEECCHH-HHHCCCCEEEECCCCCC
T ss_conf 9999867-5899999999997199--822886089999999999850136640104534-43156887987677877
No 305
>PRK06199 ornithine cyclodeaminase; Validated
Probab=80.74 E-value=2.2 Score=21.61 Aligned_cols=63 Identities=13% Similarity=0.108 Sum_probs=32.5
Q ss_pred CCCCCCEEEECCCCEEEEEECCHHHHCCCCEEEECCCHHHHHHHHHHHCCCCEEEEECCCCHHCCCCCCCCCCCHH
Q ss_conf 4765875600278158998779436318847860687589999997504565179961451001121112364101
Q gi|254780307|r 37 SERSAGTKVPFGKETIDVQDVKSYDFSDTDICLMSAGHAVSSQMSPKIAANGCIVIDNSSAWRYDSDVPLIVPEVN 112 (335)
Q Consensus 37 s~~~~G~~i~~~~~~~~~~~~~~~~~~~~Divf~a~p~~~s~~~~~~~~~~g~~VIDlS~~~R~~~d~p~~lPein 112 (335)
+.++-|..+.|..+... ....+.+.|-=|-|.|.-.. .++--+|.|||.-..+ ++ -.++|-++
T Consensus 50 ~~~~~~~~~~f~~~p~~----~~~~~~~~d~r~~amPaylg----g~~~~aGvKwv~~fp~---N~--~~GLP~~~ 112 (379)
T PRK06199 50 NSNSHGAMITFPENPPF----PGMPKPGPDRRFMAMPAYLG----GRFRTTGVKWYGSNIA---NR--EKGLPRSI 112 (379)
T ss_pred CCCCCCCEECCCCCCCC----CCCCCCCCCCCEEEECCCCC----CCCCCEEEEEECCCCC---CC--CCCCCCCE
T ss_conf 55665411015678987----78888888874897144127----8877206999565788---72--45986642
No 306
>pfam02719 Polysacc_synt_2 Polysaccharide biosynthesis protein. This is a family of diverse bacterial polysaccharide biosynthesis proteins including the CapD protein, WalL protein mannosyl-transferase and several putative epimerases (e.g. WbiI).
Probab=80.70 E-value=4.1 Score=19.96 Aligned_cols=30 Identities=23% Similarity=0.420 Sum_probs=21.2
Q ss_pred EEEECCCCHHHHHHHHHHHHCCCCEEEEEEEE
Q ss_conf 99981667789999999974499807899997
Q gi|254780307|r 5 VAVVGATGNVGREMLNIICERGFPISEVVALA 36 (335)
Q Consensus 5 vaIiGatG~vG~el~~lL~~~~~p~~~l~~~~ 36 (335)
|-|-|++|++|..|.+.|.+++.. ++..+.
T Consensus 1 ILVTGGaGFIGS~Lv~~Ll~~g~~--~v~v~d 30 (280)
T pfam02719 1 VLVTGGGGSIGSELCRQILKFNPK--KIILFS 30 (280)
T ss_pred EEEECCCCHHHHHHHHHHHHCCCC--EEEEEE
T ss_conf 799748867999999999968998--899990
No 307
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=80.69 E-value=4.1 Score=19.96 Aligned_cols=90 Identities=18% Similarity=0.282 Sum_probs=52.5
Q ss_pred EEEEECCCCHHHHHHHHHHHHCCCCEEEEEEEECC----C----------CCCEEE--------ECCCCEEEE----EEC
Q ss_conf 79998166778999999997449980789999747----6----------587560--------027815899----877
Q gi|254780307|r 4 KVAVVGATGNVGREMLNIICERGFPISEVVALASE----R----------SAGTKV--------PFGKETIDV----QDV 57 (335)
Q Consensus 4 kvaIiGatG~vG~el~~lL~~~~~p~~~l~~~~s~----~----------~~G~~i--------~~~~~~~~~----~~~ 57 (335)
||+|+|+ |-.|......|...+.- +|..+..+ + ..|+.- ..-..++.+ +.+
T Consensus 1 kV~IvG~-GGLG~~~a~~La~aGvg--~i~lvD~D~Ve~SNL~RQ~~~~~diG~~Ka~~a~~~l~~iNp~i~i~~~~~~l 77 (174)
T cd01487 1 KVGIAGA-GGLGSNIAVLLARSGVG--NLKLVDFDVVEPSNLNRQQYFLSQIGEPKVEALKENLREINPFVKIEAINIKI 77 (174)
T ss_pred CEEEECC-CHHHHHHHHHHHHHCCC--EEEEEECCCCCCCCHHCCHHHHHHCCCHHHHHHHHHHHHHCCCCEEEEEECCC
T ss_conf 9899876-78899999999981897--39999899466644301324777479749999999999879798899991444
Q ss_pred CHHH----HCCCCEEEECCCHHHHHHHH-HHHC-CCCEEEEECCC
Q ss_conf 9436----31884786068758999999-7504-56517996145
Q gi|254780307|r 58 KSYD----FSDTDICLMSAGHAVSSQMS-PKIA-ANGCIVIDNSS 96 (335)
Q Consensus 58 ~~~~----~~~~Divf~a~p~~~s~~~~-~~~~-~~g~~VIDlS~ 96 (335)
++.+ ++++|+|+-|+.+-.++.+. .... ..+..+|..|+
T Consensus 78 ~~~n~~~l~~~~D~ViD~~Dn~~tr~~l~~~~~~~~~~plv~as~ 122 (174)
T cd01487 78 DENNLEGLFGDCDIVVEAFDNAETKAMLAESLLGNKNKPVVCASG 122 (174)
T ss_pred CHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHHHHCCCCEEEEEE
T ss_conf 999999998379999999999899999999999987995999974
No 308
>PRK09414 glutamate dehydrogenase; Provisional
Probab=80.58 E-value=4.1 Score=19.93 Aligned_cols=14 Identities=21% Similarity=0.283 Sum_probs=5.8
Q ss_pred ECCCCCHHHHHHHH
Q ss_conf 24658789998731
Q gi|254780307|r 250 FEKDISIKDAVAAI 263 (335)
Q Consensus 250 l~~~~~~~~i~~~~ 263 (335)
++..++.+++..+-
T Consensus 321 ~qn~I~~~nA~~l~ 334 (446)
T PRK09414 321 TQNELDGEDAKTLI 334 (446)
T ss_pred CCCCCCHHHHHHHH
T ss_conf 25788999999999
No 309
>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase; InterPro: IPR005762 The bacterial cell wall provides strength and rigidity to counteract internal osmotic pressure, and protection against the environment. The peptidoglycan layer gives the cell wall its strength, and helps maintain the overall shape of the cell. The basic peptidoglycan structure of both Gram-positive and Gram-negative bacteria is comprised of a sheet of glycan chains connected by short cross-linking polypeptides. Biosynthesis of peptidoglycan is a multi-step (11-12 steps) process comprising three main stages: (1) formation of UDP-N-acetylmuramic acid (UDPMurNAc) from N-acetylglucosamine (GlcNAc). (2) addition of a short polypeptide chain to the UDPMurNAc. (3) addition of a second GlcNAc to the disaccharide-pentapeptide building block and transport of this unit through the cytoplasmic membrane and incorporation into the growing peptidoglycan layer. Stage two involves four key Mur ligase enzymes: MurC (6.3.2.8 from EC) , MurD (6.3.2.9 from EC) , MurE (6.3.2.13 from EC) and MurF (6.3.2.10 from EC) . These four Mur ligases are responsible for the successive additions of L-alanine, D-glutamate, meso-diaminopimelate or L-lysine, and D-alanyl-D-alanine to UDP-N-acetylmuramic acid. All four Mur ligases are topologically similar to one another, even though they display low sequence identity. They are each composed of three domains: an N-terminal Rossmann-fold domain responsible for binding the UDPMurNAc substrate; a central domain (similar to ATP-binding domains of several ATPases and GTPases); and a C-terminal domain (similar to dihydrofolate reductase fold) that appears to be associated with binding the incoming amino acid. The conserved sequence motifs found in the four Mur enzymes also map to other members of the Mur ligase family, including folylpolyglutamate synthetase, cyanophycin synthetase and the capB enzyme from Bacillales . This entry represents UDP-N-acetylmuramoylalanine-D-glutamate ligase (MurD). MurD catalyses the addition of d-glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-l-alanine. ; GO: 0005524 ATP binding, 0008764 UDP-N-acetylmuramoylalanine-D-glutamate ligase activity, 0008360 regulation of cell shape, 0009252 peptidoglycan biosynthetic process, 0009273 peptidoglycan-based cell wall biogenesis, 0051301 cell division, 0005737 cytoplasm.
Probab=80.32 E-value=3.5 Score=20.40 Aligned_cols=96 Identities=19% Similarity=0.239 Sum_probs=58.6
Q ss_pred EEEEECCCCHHHH--HHHHHHHHCCCCEEEEEEEECCCCCCEEEE---CCCCEEEEEEC--C-HHHHCCCCEEEECCCHH
Q ss_conf 7999816677899--999999744998078999974765875600---27815899877--9-43631884786068758
Q gi|254780307|r 4 KVAVVGATGNVGR--EMLNIICERGFPISEVVALASERSAGTKVP---FGKETIDVQDV--K-SYDFSDTDICLMSAGHA 75 (335)
Q Consensus 4 kvaIiGatG~vG~--el~~lL~~~~~p~~~l~~~~s~~~~G~~i~---~~~~~~~~~~~--~-~~~~~~~Divf~a~p~~ 75 (335)
||.|+|- |-+|+ -+.+.|.++++ .+.+.-. +.+...+.-. -...+..+... + .+++.++|+|..+=|=-
T Consensus 1 ~i~i~Gl-G~tG~G~a~a~~L~~~g~-~~~~~D~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~d~vv~SPGi~ 77 (476)
T TIGR01087 1 KILILGL-GKTGRGVAVARFLKKKGA-EVTVTDD-DPEEELERSKGQLKLSEGVVLYTGGKDDLEDLNNADLVVLSPGIP 77 (476)
T ss_pred CEEEEEE-CCCCHHHHHHHHHHHCCC-EEEEEEC-CCCCCCCCHHHHCCCCCCEEEEECCCCCCCCCCCCEEEEECCCCC
T ss_conf 9789986-751078999999997298-7999984-522134311331245564135326753101233420799789898
Q ss_pred HHHHHHHHHCCCCEEEE-ECCCCHHCCC
Q ss_conf 99999975045651799-6145100112
Q gi|254780307|r 76 VSSQMSPKIAANGCIVI-DNSSAWRYDS 102 (335)
Q Consensus 76 ~s~~~~~~~~~~g~~VI-DlS~~~R~~~ 102 (335)
...+++..+.++|+.|+ |+.=++|+.+
T Consensus 78 ~~hp~~~~a~~~g~~v~gdi~L~~~~~~ 105 (476)
T TIGR01087 78 PDHPLVQAAAKRGIPVVGDIELALRLVD 105 (476)
T ss_pred CCCHHHHHHHHCCCEEEEHHHHHHHHCC
T ss_conf 6777999999669808986799997415
No 310
>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t
Probab=80.23 E-value=4.2 Score=19.86 Aligned_cols=89 Identities=21% Similarity=0.291 Sum_probs=52.1
Q ss_pred EEEEEECCCCHHHHHHHHHHHHCCCCEEEEEEEECCCCCCEEEECCC----------------CE---------EEEEEC
Q ss_conf 17999816677899999999744998078999974765875600278----------------15---------899877
Q gi|254780307|r 3 FKVAVVGATGNVGREMLNIICERGFPISEVVALASERSAGTKVPFGK----------------ET---------IDVQDV 57 (335)
Q Consensus 3 ~kvaIiGatG~vG~el~~lL~~~~~p~~~l~~~~s~~~~G~~i~~~~----------------~~---------~~~~~~ 57 (335)
.+|+|-|. |.||+-..+.|.+.+. .+..++.. .|--....+ .. ...+.+
T Consensus 39 ~~vaIQGf-GnVG~~aA~~l~e~Ga---kvVaVsD~--~G~i~~~~Gld~~~l~~l~~~k~~~~~~~~~~~~~~~~~~~~ 112 (254)
T cd05313 39 KRVAISGS-GNVAQYAAEKLLELGA---KVVTLSDS--KGYVYDPDGFTGEKLAELKEIKEVRRGRVSEYAKKYGTAKYF 112 (254)
T ss_pred CEEEEECC-CHHHHHHHHHHHHCCC---EEEEEECC--CCEEECCCCCCHHHHHHHHHHHHHCCCCCHHHHHCCCCCEEC
T ss_conf 99999897-7999999999997799---79999857--850887999988999999999974687102444138985663
Q ss_pred CHHH-H-CCCCEEEECC-CHHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf 9436-3-1884786068-7589999997504565179961451
Q gi|254780307|r 58 KSYD-F-SDTDICLMSA-GHAVSSQMSPKIAANGCIVIDNSSA 97 (335)
Q Consensus 58 ~~~~-~-~~~Divf~a~-p~~~s~~~~~~~~~~g~~VIDlS~~ 97 (335)
++++ | .+||+.+-|+ ++....+-++++.++||++|==.+.
T Consensus 113 ~~~~~~~~~cDIliPaA~en~I~~~nA~~i~a~~ck~IvEgAN 155 (254)
T cd05313 113 EGKKPWEVPCDIAFPCATQNEVDAEDAKLLVKNGCKYVAEGAN 155 (254)
T ss_pred CCCCHHHCCCCEEEECCCCCCCCHHHHHHHHHCCCEEEEECCC
T ss_conf 8975133047699743546678999999999679829986588
No 311
>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional
Probab=80.02 E-value=4.3 Score=19.82 Aligned_cols=12 Identities=25% Similarity=0.487 Sum_probs=5.6
Q ss_pred CHHHHHHHHHHH
Q ss_conf 302236799999
Q gi|254780307|r 315 NLRKGAALNAVQ 326 (335)
Q Consensus 315 NL~kGAAg~AVq 326 (335)
|++.||--.++.
T Consensus 446 dl~~gAni~gf~ 457 (469)
T PTZ00079 446 DLQAGANIAGFL 457 (469)
T ss_pred CHHHHHHHHHHH
T ss_conf 889821299999
No 312
>PRK07578 short chain dehydrogenase; Provisional
Probab=79.93 E-value=4.3 Score=19.80 Aligned_cols=23 Identities=35% Similarity=0.771 Sum_probs=20.9
Q ss_pred EEEEEECCCCHHHHHHHHHHHHC
Q ss_conf 17999816677899999999744
Q gi|254780307|r 3 FKVAVVGATGNVGREMLNIICER 25 (335)
Q Consensus 3 ~kvaIiGatG~vG~el~~lL~~~ 25 (335)
|||-|.|||+=+|+++.+.|.++
T Consensus 1 MrVlVTGas~GIG~aia~~la~~ 23 (199)
T PRK07578 1 MKILVIGASGTIGRAVVAELSAR 23 (199)
T ss_pred CEEEEECCCCHHHHHHHHHHHCC
T ss_conf 97999998748999999999679
No 313
>KOG1399 consensus
Probab=79.93 E-value=2.4 Score=21.40 Aligned_cols=29 Identities=31% Similarity=0.465 Sum_probs=23.6
Q ss_pred CCEEEEEECCCCHHHHHHHHHHHHCCCCEE
Q ss_conf 961799981667789999999974499807
Q gi|254780307|r 1 MTFKVAVVGATGNVGREMLNIICERGFPIS 30 (335)
Q Consensus 1 M~~kvaIiGatG~vG~el~~lL~~~~~p~~ 30 (335)
|+.+|||||| |-.|..-.+-|.+++++..
T Consensus 5 ~~~~vaIIGA-G~sGL~~ar~l~~~g~~v~ 33 (448)
T KOG1399 5 MSKDVAVIGA-GPAGLAAARELLREGHEVV 33 (448)
T ss_pred CCCCEEEECC-CHHHHHHHHHHHHCCCCCE
T ss_conf 7785489785-6688899999987799836
No 314
>PRK07045 putative monooxygenase; Reviewed
Probab=79.90 E-value=3.7 Score=20.24 Aligned_cols=27 Identities=22% Similarity=0.525 Sum_probs=23.5
Q ss_pred EEEEEECCCCHHHHHHHHHHHHCCCCEE
Q ss_conf 1799981667789999999974499807
Q gi|254780307|r 3 FKVAVVGATGNVGREMLNIICERGFPIS 30 (335)
Q Consensus 3 ~kvaIiGatG~vG~el~~lL~~~~~p~~ 30 (335)
++|.|+|| |.+|.-+--.|.+++++..
T Consensus 6 ~dVlIvGa-G~aGl~lA~~L~r~G~~v~ 32 (388)
T PRK07045 6 VDVLINGS-GIAGVALAHLLGARGHSVT 32 (388)
T ss_pred CCEEEECC-CHHHHHHHHHHHHCCCCEE
T ss_conf 85899992-8899999999986799899
No 315
>KOG3923 consensus
Probab=79.67 E-value=2.8 Score=20.91 Aligned_cols=37 Identities=27% Similarity=0.490 Sum_probs=25.1
Q ss_pred CCEEEEEECCCCHHHHHH----HHHHHHCCCCEEEEEEEECC
Q ss_conf 961799981667789999----99997449980789999747
Q gi|254780307|r 1 MTFKVAVVGATGNVGREM----LNIICERGFPISEVVALASE 38 (335)
Q Consensus 1 M~~kvaIiGatG~vG~el----~~lL~~~~~p~~~l~~~~s~ 38 (335)
|++||||||| |.+|.-- +++-....+|..++.-++..
T Consensus 2 ~~~~iaViGa-GVIGlsTA~~i~~~~~~~~ip~~~vtv~~Dr 42 (342)
T KOG3923 2 KTPRIAVIGA-GVIGLSTALCILELYHSVLIPVAKVTVISDR 42 (342)
T ss_pred CCCCEEEECC-CCHHHHHHHHHHHHHHHCCCCCCEEEEECCC
T ss_conf 9760899747-7101568999998654126886227874577
No 316
>PRK05693 short chain dehydrogenase; Provisional
Probab=79.66 E-value=4.4 Score=19.75 Aligned_cols=26 Identities=19% Similarity=0.578 Sum_probs=21.0
Q ss_pred EEEEEE-CCCCHHHHHHHHHHHHCCCC
Q ss_conf 179998-16677899999999744998
Q gi|254780307|r 3 FKVAVV-GATGNVGREMLNIICERGFP 28 (335)
Q Consensus 3 ~kvaIi-GatG~vG~el~~lL~~~~~p 28 (335)
||+++| |+++=+|+++.+.|.++++-
T Consensus 1 MKvvlITGassGIG~alA~~la~~G~~ 27 (274)
T PRK05693 1 MPVVLITGCSSGIGRALADAFKAAGYE 27 (274)
T ss_pred CCEEEECCCCCHHHHHHHHHHHHCCCE
T ss_conf 998999488858999999999987999
No 317
>PRK07574 formate dehydrogenase; Provisional
Probab=79.54 E-value=3 Score=20.77 Aligned_cols=27 Identities=11% Similarity=0.174 Sum_probs=20.7
Q ss_pred HHCCCCEEEEC--CCHHHHHHHHHHHCCC
Q ss_conf 63188478606--8758999999750456
Q gi|254780307|r 61 DFSDTDICLMS--AGHAVSSQMSPKIAAN 87 (335)
Q Consensus 61 ~~~~~Divf~a--~p~~~s~~~~~~~~~~ 87 (335)
.+.+.|+|++. -|.-.++|..+++.+-
T Consensus 87 ~l~da~ivis~pf~p~ylT~E~IekApnL 115 (385)
T PRK07574 87 ELPDADVVISQPFWPAYLTAERIAKAPNL 115 (385)
T ss_pred HCCCCEEEECCCCCCCCCCHHHHHCCCCC
T ss_conf 15776399745887321149999438867
No 318
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=79.41 E-value=2.9 Score=20.90 Aligned_cols=31 Identities=26% Similarity=0.386 Sum_probs=25.9
Q ss_pred CCEEEEEECCCCHHHHHHHHHHHHCCCCEEEE
Q ss_conf 96179998166778999999997449980789
Q gi|254780307|r 1 MTFKVAVVGATGNVGREMLNIICERGFPISEV 32 (335)
Q Consensus 1 M~~kvaIiGatG~vG~el~~lL~~~~~p~~~l 32 (335)
|+-.|+|||| |-+|.-|-.+|..++++..=+
T Consensus 1 mrt~V~IVGa-GP~GL~LA~lLar~GI~~vVl 31 (392)
T PRK08243 1 MRTQVAIIGA-GPAGLLLGQLLHLAGIDSVVL 31 (392)
T ss_pred CCCCEEEECC-CHHHHHHHHHHHHCCCCEEEE
T ss_conf 9988999997-799999999999779988999
No 319
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=79.19 E-value=3.7 Score=20.19 Aligned_cols=72 Identities=11% Similarity=0.160 Sum_probs=33.8
Q ss_pred EEEEEECCCCHHHHHHHHHHHHCCCCEEEEEEEECCCCCCEEEECCCCEEEEEECCHHHHCCCCEEEECCCHHHHHHHHH
Q ss_conf 17999816677899999999744998078999974765875600278158998779436318847860687589999997
Q gi|254780307|r 3 FKVAVVGATGNVGREMLNIICERGFPISEVVALASERSAGTKVPFGKETIDVQDVKSYDFSDTDICLMSAGHAVSSQMSP 82 (335)
Q Consensus 3 ~kvaIiGatG~vG~el~~lL~~~~~p~~~l~~~~s~~~~G~~i~~~~~~~~~~~~~~~~~~~~Divf~a~p~~~s~~~~~ 82 (335)
|||.|+=...+- ..=++.|.+. .|+..+...+. +++. ....++|+++.. ....++++..
T Consensus 1 mki~~ld~~~~~-~~~~~~l~~~----~e~~~~~~~~~--------------ee~~-~~i~dadili~~-~~~i~~e~l~ 59 (311)
T PRK08410 1 MKIVILDAKTLG-DVDLSVFNEF----GDFQIYDTTSP--------------EEVI-ERIKDANIIITN-KVVIDKEVLS 59 (311)
T ss_pred CEEEEEECCCCC-CCCHHHHHCC----CCEEEECCCCH--------------HHHH-HHHCCCCEEEEC-CCCCCHHHHH
T ss_conf 959999378677-2265877057----75899789898--------------9999-983899499974-8854999993
Q ss_pred HHCCCCEEEEECCCC
Q ss_conf 504565179961451
Q gi|254780307|r 83 KIAANGCIVIDNSSA 97 (335)
Q Consensus 83 ~~~~~g~~VIDlS~~ 97 (335)
++.+ .++|-..+.
T Consensus 60 ~a~~--LK~I~~~g~ 72 (311)
T PRK08410 60 ALPN--LKLICITAT 72 (311)
T ss_pred CCCC--CEEEEECCC
T ss_conf 6999--849998881
No 320
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=79.16 E-value=4.6 Score=19.66 Aligned_cols=137 Identities=18% Similarity=0.224 Sum_probs=74.9
Q ss_pred EEEEEECCCCHHHHHHHHHHHHCCCCEEEEEE-------------EECCCCCCEEEE----------CCCCEEEE----E
Q ss_conf 17999816677899999999744998078999-------------974765875600----------27815899----8
Q gi|254780307|r 3 FKVAVVGATGNVGREMLNIICERGFPISEVVA-------------LASERSAGTKVP----------FGKETIDV----Q 55 (335)
Q Consensus 3 ~kvaIiGatG~vG~el~~lL~~~~~p~~~l~~-------------~~s~~~~G~~i~----------~~~~~~~~----~ 55 (335)
-||.|+|+ |-.|..+...|..-+.-.+.|.- +.+++..|+.++ .-..++.+ +
T Consensus 25 a~VlVvGa-GGLGs~~a~~La~aGVG~i~ivD~D~Ve~SNL~RQ~L~~e~Dig~~~pKa~aA~~~L~~iNp~v~I~~~~~ 103 (339)
T PRK07688 25 KHVLIIGA-GALGTANAEMLVRAGVGKVTIVDRDYVEWSNLQRQQLYTESDVKNNLPKAVAAKKRLEEINSEVRVEAIVQ 103 (339)
T ss_pred CCEEEECC-CHHHHHHHHHHHHCCCCEEEEEECCEECCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHCCCCCEEEEEEC
T ss_conf 97899877-77779999999984898299980999246678865065621332263779999999983499860587600
Q ss_pred ECCHHH----HCCCCEEEECCCHHHHHHHHHHHC-CCCEEEEECCCCHHCCCCCCCCCCCHHHHHHCCCCCCCEECCCCC
Q ss_conf 779436----318847860687589999997504-565179961451001121112364101111103334312126764
Q gi|254780307|r 56 DVKSYD----FSDTDICLMSAGHAVSSQMSPKIA-ANGCIVIDNSSAWRYDSDVPLIVPEVNPQTISLASRKNIIANPNC 130 (335)
Q Consensus 56 ~~~~~~----~~~~Divf~a~p~~~s~~~~~~~~-~~g~~VIDlS~~~R~~~d~p~~lPein~~~i~~~~~~~~VanPgC 130 (335)
+++++. ++++|+|+=|+.+-.++-++..+. +.++.+|.-|. .+++-.+--.+|+-.|...-.... .-....+|
T Consensus 104 ~l~~~n~~~li~~~DlViD~tDNf~tR~liNd~c~~~~~PlV~ga~-~g~~G~~~~~~p~~~pC~rCl~p~-~p~~~~tC 181 (339)
T PRK07688 104 DVTAEELEELVTNVDVIIDATDNFETRFIVNDAAQKYSIPWIYGAC-VGSYGLSYTIIPGKTPCLSCLLQS-IPLGGATC 181 (339)
T ss_pred CCCHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHHHHCCCEEEEEE-ECCEEEEEECCCCCCCCCCCCCCC-CCCCCCCC
T ss_conf 3998999999851889998788999999999999995999899988-446889995389999705416899-99889984
Q ss_pred CCCCCCCCCCHH
Q ss_conf 322211122001
Q gi|254780307|r 131 STIQLVVALKPL 142 (335)
Q Consensus 131 ~at~~~l~L~PL 142 (335)
-+.+.+-++-.+
T Consensus 182 ~~~GVlgp~vgi 193 (339)
T PRK07688 182 DTAGIISPAVQL 193 (339)
T ss_pred CCCCCCCCHHHH
T ss_conf 236636450789
No 321
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase; InterPro: IPR012733 4-hydroxybenzoate 3-monooxygenase is a flavoprotein that converts its substrate to 3,4-dihydroxybenzoate, which subsequently enters the beta-ketioadipate pathway of aromatic degradation, using molecular oxygen and NADPH as shown below . 4-hydroxybenzoate + NADPH + O(2) = 3,4-dihydroxybenzoate + NADP(+) + H(2)O 4-hydroxybenzoate is an intermediate in the degradation of lignin and other aromatic plant compounds, and this enzyme is found extensively in soil bacteria. This enzyme is a homodimer where each subunit is composed of three distinct domains: an N-terminal flavin-binding domain with a beta-alpha-beta fold, a small substrate-binding domain composed of a single alpha helix and beta-sheet, and a C-terminal helical domain . The active site is found at the interface of all three domains. Catalysis occurs by a two-step reaction. In the first step, flavin is reduced by NADPH. Subsequently, the reduced flavin is oxygenated to a hydroperoxide which transfers the hydroxyl group to the substrate, forming 3,4-dihydroxybenzoate.; GO: 0018659 4-hydroxybenzoate 3-monooxygenase activity, 0050660 FAD binding, 0043639 benzoate catabolic process.
Probab=79.00 E-value=3.2 Score=20.61 Aligned_cols=98 Identities=14% Similarity=0.206 Sum_probs=54.8
Q ss_pred CCEEEEEECCCCHHHHHHHHHHHHCCCCEEEEEE-----EECCCCCCEE---------------------EECCCCEEEE
Q ss_conf 9617999816677899999999744998078999-----9747658756---------------------0027815899
Q gi|254780307|r 1 MTFKVAVVGATGNVGREMLNIICERGFPISEVVA-----LASERSAGTK---------------------VPFGKETIDV 54 (335)
Q Consensus 1 M~~kvaIiGatG~vG~el~~lL~~~~~p~~~l~~-----~~s~~~~G~~---------------------i~~~~~~~~~ 54 (335)
|+-+|||||+ |=.|.=|=|||.+.+...+=|.- +.+.=-||-. +...+-++..
T Consensus 1 MkTqVaIiG~-GPsGLLLGQLLh~~GId~viLEr~~~dYVlgRIRAGvLE~g~v~LL~~agv~~Rm~~eG~~H~G~~ia~ 79 (393)
T TIGR02360 1 MKTQVAIIGA-GPSGLLLGQLLHKAGIDTVILERKSRDYVLGRIRAGVLEQGTVDLLREAGVDERMDREGLVHEGIEIAF 79 (393)
T ss_pred CCEEEEEECC-CHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEC
T ss_conf 9517999757-735789999998669858997235722343321012357899999987223223453587325654501
Q ss_pred EE----CCHHHHCC-CCEEEECCCHHHHHHHHHHHCCCCEEEEECCCCHHC
Q ss_conf 87----79436318-847860687589999997504565179961451001
Q gi|254780307|r 55 QD----VKSYDFSD-TDICLMSAGHAVSSQMSPKIAANGCIVIDNSSAWRY 100 (335)
Q Consensus 55 ~~----~~~~~~~~-~Divf~a~p~~~s~~~~~~~~~~g~~VIDlS~~~R~ 100 (335)
.+ ++=...++ -++..- .=.++++++.+.--+.|..++=.+.+-|+
T Consensus 80 ~g~~~riDl~~~tGG~~V~VY-GQTEvtrDL~~ARe~~G~~~v~~a~~V~~ 129 (393)
T TIGR02360 80 DGQRFRIDLKALTGGKTVMVY-GQTEVTRDLYEAREQAGLKTVYDADDVRL 129 (393)
T ss_pred CCCEEECCHHHHCCCCEEEEE-CCHHHHHHHHHHHHHCCCCEEEECCCCCC
T ss_conf 782420007660589789997-66157788999998638955641143211
No 322
>pfam06408 consensus
Probab=78.89 E-value=4.7 Score=19.60 Aligned_cols=91 Identities=16% Similarity=0.280 Sum_probs=49.0
Q ss_pred EEEEECCCCHHHHHHHHHHHHC-CCCEEEEEEEECCC-CCCEEE-ECCCCEEEEEECCHHHH--------CCC---CEEE
Q ss_conf 7999816677899999999744-99807899997476-587560-02781589987794363--------188---4786
Q gi|254780307|r 4 KVAVVGATGNVGREMLNIICER-GFPISEVVALASER-SAGTKV-PFGKETIDVQDVKSYDF--------SDT---DICL 69 (335)
Q Consensus 4 kvaIiGatG~vG~el~~lL~~~-~~p~~~l~~~~s~~-~~G~~i-~~~~~~~~~~~~~~~~~--------~~~---Divf 69 (335)
||-+||. |-+|+..+-||.+| +++...++.+.-.. ..+... ...+-....+.+.++++ ++. |+++
T Consensus 3 ~Iv~iGf-GSIgq~~LPLl~rH~~~~~~~Itiid~~d~~~~~~~~~~~Gi~fi~~~lT~eNy~~~L~~~L~~gg~gdflv 81 (471)
T pfam06408 3 PILMIGF-GSIGRGTLPLIERHFKFDRSNIVVIDPRDTKKDRKLLAEKGIRFVQTAVTKDNYKNVLDPLLKGGGGQGFCV 81 (471)
T ss_pred CEEEECC-CHHHHHHHHHHHHHCCCCHHHEEEECCCCCHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHHHCCCCCCEEE
T ss_conf 7799875-716742067888760788789899767875456677875697688614587889999999862677788799
Q ss_pred ECCCHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 06875899999975045651799614
Q gi|254780307|r 70 MSAGHAVSSQMSPKIAANGCIVIDNS 95 (335)
Q Consensus 70 ~a~p~~~s~~~~~~~~~~g~~VIDlS 95 (335)
--.-+--|.+++.-..+.|+.-||.|
T Consensus 82 nLSvniss~~ii~~C~e~GvlYldT~ 107 (471)
T pfam06408 82 NLSVDTSSLDLMRLCREHGVLYVDTV 107 (471)
T ss_pred EEECCCCHHHHHHHHHHHCCEEEECC
T ss_conf 80115788999999998098775544
No 323
>cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein
Probab=78.83 E-value=3.6 Score=20.28 Aligned_cols=70 Identities=16% Similarity=0.300 Sum_probs=41.8
Q ss_pred EEEEEECCCCHHHHHHHHHH-H-HCCCCEEEEEEEECC-CCC----CE---E-EECCCCEEEEEECC--HHHHCCCCEEE
Q ss_conf 17999816677899999999-7-449980789999747-658----75---6-00278158998779--43631884786
Q gi|254780307|r 3 FKVAVVGATGNVGREMLNII-C-ERGFPISEVVALASE-RSA----GT---K-VPFGKETIDVQDVK--SYDFSDTDICL 69 (335)
Q Consensus 3 ~kvaIiGatG~vG~el~~lL-~-~~~~p~~~l~~~~s~-~~~----G~---~-i~~~~~~~~~~~~~--~~~~~~~Divf 69 (335)
|||+|+||-+..-.++++-| . .+.++..++.+..-+ ... ++ . ....+.++.+.-.. .+.+.++|+||
T Consensus 1 mKI~iIGaGS~~tp~lv~~l~~~~~~l~~~ei~L~DID~~~rL~~~~~la~~~~~~~~~~~~v~~ttd~~eAl~gADfVi 80 (419)
T cd05296 1 MKLTIIGGGSSYTPELIEGLIRRYEELPVTELVLVDIDEEEKLEIVGALAKRMVKKAGLPIKVHLTTDRREALEGADFVF 80 (419)
T ss_pred CEEEEECCCHHHHHHHHHHHHHCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHCCCCEEE
T ss_conf 97999897466558999999845434898889998998599999999999999996099808999679999836999999
Q ss_pred ECC
Q ss_conf 068
Q gi|254780307|r 70 MSA 72 (335)
Q Consensus 70 ~a~ 72 (335)
.+.
T Consensus 81 ~~i 83 (419)
T cd05296 81 TQI 83 (419)
T ss_pred EEE
T ss_conf 987
No 324
>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated
Probab=78.81 E-value=4.7 Score=19.59 Aligned_cols=31 Identities=23% Similarity=0.399 Sum_probs=21.2
Q ss_pred EEEEECCCCHHHHHHHHHHHHCCCCEEEEEEEE
Q ss_conf 799981667789999999974499807899997
Q gi|254780307|r 4 KVAVVGATGNVGREMLNIICERGFPISEVVALA 36 (335)
Q Consensus 4 kvaIiGatG~vG~el~~lL~~~~~p~~~l~~~~ 36 (335)
||-|+|..|++|..|.++|.++ -..|+..+.
T Consensus 317 ~vlilgvngfig~hl~~~~l~~--~~~~v~g~d 347 (660)
T PRK08125 317 RVLILGVNGFIGNHLTERLLRD--DNYEVYGLD 347 (660)
T ss_pred EEEEEECCCHHHHHHHHHHHCC--CCEEEEEEE
T ss_conf 7999834413678999998503--885899886
No 325
>PRK07454 short chain dehydrogenase; Provisional
Probab=78.77 E-value=2.8 Score=20.98 Aligned_cols=32 Identities=19% Similarity=0.467 Sum_probs=25.1
Q ss_pred EEEEEE-CCCCHHHHHHHHHHHHCCCCEEEEEEEEC
Q ss_conf 179998-16677899999999744998078999974
Q gi|254780307|r 3 FKVAVV-GATGNVGREMLNIICERGFPISEVVALAS 37 (335)
Q Consensus 3 ~kvaIi-GatG~vG~el~~lL~~~~~p~~~l~~~~s 37 (335)
||+++| ||++=+|+++-+.|.++++ ++...+-
T Consensus 6 mKvalITGas~GIG~a~A~~la~~G~---~V~l~~R 38 (241)
T PRK07454 6 MPTALITGASRGIGKATALAFAKAGW---DLALVAR 38 (241)
T ss_pred CCEEEECCCCCHHHHHHHHHHHHCCC---EEEEEEC
T ss_conf 98899917587899999999998799---8999989
No 326
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=78.76 E-value=3.1 Score=20.68 Aligned_cols=31 Identities=16% Similarity=0.353 Sum_probs=23.9
Q ss_pred CCEEEEEECCCCHHHHHHHHHHHHCCCCEEEEEEEE
Q ss_conf 961799981667789999999974499807899997
Q gi|254780307|r 1 MTFKVAVVGATGNVGREMLNIICERGFPISEVVALA 36 (335)
Q Consensus 1 M~~kvaIiGatG~vG~el~~lL~~~~~p~~~l~~~~ 36 (335)
|+ .|.|+|+ |.||.-+--.|.++++ ++..+.
T Consensus 1 m~-DV~IvGa-G~vGl~lAl~La~~g~---~v~lie 31 (374)
T PRK06617 1 MS-NTVILGC-GLSGMLTALSFAQKGI---KTTIFE 31 (374)
T ss_pred CC-EEEEECC-CHHHHHHHHHHHHCCC---EEEEEE
T ss_conf 96-2999996-6999999999985799---699997
No 327
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=78.50 E-value=2.8 Score=20.98 Aligned_cols=90 Identities=17% Similarity=0.226 Sum_probs=47.5
Q ss_pred EEEEEECCCCHHHHHHHHHHHHCCCCEEEEEEEE--CCCCCCEEEECCCCEEEE-EE--CCHH-HHCCCCEEEECCCH--
Q ss_conf 1799981667789999999974499807899997--476587560027815899-87--7943-63188478606875--
Q gi|254780307|r 3 FKVAVVGATGNVGREMLNIICERGFPISEVVALA--SERSAGTKVPFGKETIDV-QD--VKSY-DFSDTDICLMSAGH-- 74 (335)
Q Consensus 3 ~kvaIiGatG~vG~el~~lL~~~~~p~~~l~~~~--s~~~~G~~i~~~~~~~~~-~~--~~~~-~~~~~Divf~a~p~-- 74 (335)
-++.|+|| |..|..|+|-+..+ |...++.+- +++..|..+.- +.+ .. +.+. .-.+++.++.|.|+
T Consensus 117 ~r~lIiGA-G~ag~~l~r~~~~~--~~~~pV~fiDdd~~~~g~~i~G----v~V~g~~~i~~~v~~~~~~~iiiAips~~ 189 (588)
T COG1086 117 IRLLIIGA-GSAGDLLLRALRRD--PEYTPVAFLDDDPDLTGMKIRG----VPVLGRIEIERVVEELGIQLILIAIPSAS 189 (588)
T ss_pred CCEEEECC-CHHHHHHHHHHHHC--CCCCEEEEECCCHHHCCCEEEC----EEEECHHHHHHHHHHCCCCEEEEECCCCC
T ss_conf 86699937-65899999999748--9961599988873651887702----26423147999999718766999648788
Q ss_pred -HHHHHHHHHHCCCCEEEEECCCCHH
Q ss_conf -8999999750456517996145100
Q gi|254780307|r 75 -AVSSQMSPKIAANGCIVIDNSSAWR 99 (335)
Q Consensus 75 -~~s~~~~~~~~~~g~~VIDlS~~~R 99 (335)
+.-+++...+...|+.|=-+++-..
T Consensus 190 ~~~~~~i~~~l~~~~~~v~~lP~~~~ 215 (588)
T COG1086 190 QEERRRILLRLARTGIAVRILPQLTD 215 (588)
T ss_pred HHHHHHHHHHHHHCCCCEEECCCHHH
T ss_conf 99999999998755970785574899
No 328
>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p; InterPro: IPR006285 This is a family of eukaryotic proteins found in animals, plants, and yeasts that includes Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy. .
Probab=78.38 E-value=1.5 Score=22.64 Aligned_cols=95 Identities=21% Similarity=0.383 Sum_probs=55.1
Q ss_pred EEEEEECCCCHHHHHHHHHHHHCCCCEEEEEEEECC-----CCCCEE---------------------------------
Q ss_conf 179998166778999999997449980789999747-----658756---------------------------------
Q gi|254780307|r 3 FKVAVVGATGNVGREMLNIICERGFPISEVVALASE-----RSAGTK--------------------------------- 44 (335)
Q Consensus 3 ~kvaIiGatG~vG~el~~lL~~~~~p~~~l~~~~s~-----~~~G~~--------------------------------- 44 (335)
.||-|+|| |..|-.+-|.|. +|=+=.|.|+.-. +-.-++
T Consensus 349 ~KvLlLGA-GTLGc~vaR~L~--GwGvRhItFvDngkVs~sNPVRQsL~nFeDcl~gG~~KAetA~kalk~IFP~i~~~g 425 (689)
T TIGR01381 349 VKVLLLGA-GTLGCQVARVLL--GWGVRHITFVDNGKVSYSNPVRQSLYNFEDCLEGGEGKAETAAKALKRIFPAIEASG 425 (689)
T ss_pred CCEEEECC-CHHHHHHHHHHH--CCCCEEEEEEECCEEEECCCCCCCCCCHHHHHCCCCHHHHHHHHHHHHHCHHHHCCC
T ss_conf 23123426-334568988874--266215788645745402774687643364513786238999999986250020153
Q ss_pred ----EECCCCEEEEEECCH--HH-------HCCCCEEEECCCHHHHHHHHHHHCCCCEEEEECCCCHHCC
Q ss_conf ----002781589987794--36-------3188478606875899999975045651799614510011
Q gi|254780307|r 45 ----VPFGKETIDVQDVKS--YD-------FSDTDICLMSAGHAVSSQMSPKIAANGCIVIDNSSAWRYD 101 (335)
Q Consensus 45 ----i~~~~~~~~~~~~~~--~~-------~~~~Divf~a~p~~~s~~~~~~~~~~g~~VIDlS~~~R~~ 101 (335)
||..|+.+.=++.+. .| .++-|+||+++.+..| +|.|.++.+...=|=.++|.=+|
T Consensus 426 ~~l~vPMpGHpi~~~~~~~~~~D~~rL~~Lik~HDvVFLl~DsRE~-RWLPtvLc~~~~KIaI~aAlGFD 494 (689)
T TIGR01381 426 YRLEVPMPGHPIDEKDVDELLEDIKRLEELIKEHDVVFLLLDSREA-RWLPTVLCARFDKIAISAALGFD 494 (689)
T ss_pred EEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCEEEEECCCCHH-HHHHHHHHHCCCCEEEEEEECCC
T ss_conf 1786168888887221266899999999986500535530136500-22378997537944888742336
No 329
>KOG2666 consensus
Probab=78.37 E-value=4.8 Score=19.56 Aligned_cols=68 Identities=22% Similarity=0.337 Sum_probs=40.5
Q ss_pred EEEEEECCCCHHHHHHHHHHHHCCCCEEEEEEEEC--CCCCC---EEEEC------------CCCEEEEEECCHHHHCCC
Q ss_conf 17999816677899999999744998078999974--76587---56002------------781589987794363188
Q gi|254780307|r 3 FKVAVVGATGNVGREMLNIICERGFPISEVVALAS--ERSAG---TKVPF------------GKETIDVQDVKSYDFSDT 65 (335)
Q Consensus 3 ~kvaIiGatG~vG~el~~lL~~~~~p~~~l~~~~s--~~~~G---~~i~~------------~~~~~~~~~~~~~~~~~~ 65 (335)
+||+-+|| ||||+--...+. +.-|.+++..+.- ++-.. .+++. .++.+-+..--+......
T Consensus 2 ~KicCiGA-GYVGGPT~aviA-lkCP~i~vtvVD~s~~rInaWNSd~LPIYEPGLdevVk~cRgkNLFFStdiek~i~Ea 79 (481)
T KOG2666 2 VKICCIGA-GYVGGPTCAVIA-LKCPDIEVTVVDISVPRINAWNSDKLPIYEPGLDEVVKQCRGKNLFFSTDIEKAIKEA 79 (481)
T ss_pred CEEEEECC-CCCCCCHHHHHH-HCCCCEEEEEEECCCHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEEECCHHHHHHHC
T ss_conf 35999567-766883064431-0389548999866837765016888865687779999983487515515668776542
Q ss_pred CEEEECC
Q ss_conf 4786068
Q gi|254780307|r 66 DICLMSA 72 (335)
Q Consensus 66 Divf~a~ 72 (335)
|++|...
T Consensus 80 DlvFiSV 86 (481)
T KOG2666 80 DLVFISV 86 (481)
T ss_pred CEEEEEE
T ss_conf 5699993
No 330
>KOG2380 consensus
Probab=78.35 E-value=4.8 Score=19.51 Aligned_cols=90 Identities=14% Similarity=0.209 Sum_probs=51.5
Q ss_pred EEEEEECCCCHHHHHHHHHHHHCCCCEEEEEEEECCCCCCEEEECCCCEEEEEECCHHHHCCCCEEEECCCHHHHHHHHH
Q ss_conf 17999816677899999999744998078999974765875600278158998779436318847860687589999997
Q gi|254780307|r 3 FKVAVVGATGNVGREMLNIICERGFPISEVVALASERSAGTKVPFGKETIDVQDVKSYDFSDTDICLMSAGHAVSSQMSP 82 (335)
Q Consensus 3 ~kvaIiGatG~vG~el~~lL~~~~~p~~~l~~~~s~~~~G~~i~~~~~~~~~~~~~~~~~~~~Divf~a~p~~~s~~~~~ 82 (335)
.+|||+|. |--|+=+-+-|.+++|-.+ .-+++.=..+....-.-.+..+.+.--..-|+|++|+...-..+++.
T Consensus 53 l~IaIIGf-GnmGqflAetli~aGh~li-----~hsRsdyssaa~~yg~~~ft~lhdlcerhpDvvLlctsilsiekila 126 (480)
T KOG2380 53 LVIAIIGF-GNMGQFLAETLIDAGHGLI-----CHSRSDYSSAAEKYGSAKFTLLHDLCERHPDVVLLCTSILSIEKILA 126 (480)
T ss_pred EEEEEEEC-CCHHHHHHHHHHHCCCEEE-----ECCCCHHHHHHHHHCCCCCCCHHHHHHCCCCEEEEEEHHHHHHHHHH
T ss_conf 48999713-7088999999986486267-----44750068999974123346177787548997999702540998998
Q ss_pred HH----CCCCEEEEECCCCH
Q ss_conf 50----45651799614510
Q gi|254780307|r 83 KI----AANGCIVIDNSSAW 98 (335)
Q Consensus 83 ~~----~~~g~~VIDlS~~~ 98 (335)
.+ ...|..++|--|--
T Consensus 127 typfqrlrrgtlfvdvlSvK 146 (480)
T KOG2380 127 TYPFQRLRRGTLFVDVLSVK 146 (480)
T ss_pred HCCCHHHCCCEEEEEEEECC
T ss_conf 56803420210674234314
No 331
>PRK09436 thrA bifunctional aspartokinase I/homeserine dehydrogenase I; Provisional
Probab=78.23 E-value=4.9 Score=19.48 Aligned_cols=92 Identities=14% Similarity=0.138 Sum_probs=46.6
Q ss_pred CEEEEEECCCCHHHHHHHHHHHHCC----CCEEEEEEEECCCCCCEEEECCCCEE-----EE----EECCHHHH----C-
Q ss_conf 6179998166778999999997449----98078999974765875600278158-----99----87794363----1-
Q gi|254780307|r 2 TFKVAVVGATGNVGREMLNIICERG----FPISEVVALASERSAGTKVPFGKETI-----DV----QDVKSYDF----S- 63 (335)
Q Consensus 2 ~~kvaIiGatG~vG~el~~lL~~~~----~p~~~l~~~~s~~~~G~~i~~~~~~~-----~~----~~~~~~~~----~- 63 (335)
+++|+|+|. |.||.+|++.+.+.. ...+++..++-.+|..-.+...+-++ .+ ++.+-..| .
T Consensus 465 ~i~i~l~G~-G~vG~~ll~qi~~q~~~l~~~~i~l~v~gianS~~~l~~~~Gi~l~~w~~~l~~~~~~~~~~~~~~~~~~ 543 (817)
T PRK09436 465 VIDVFVIGV-GGVGGALLEQIKRQQQWLKKKHIDLRVCGIANSRKMLLDEHGIDLDNWREELAEAGEPFDLDRLIRLVKE 543 (817)
T ss_pred EEEEEEEEC-CHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCEEEECCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHH
T ss_conf 477999844-7287999999999999885269449999997576057668998989999999856787779999999996
Q ss_pred ---CCCEEEECCCHHHHHHHHHHHCCCCEEEEEC
Q ss_conf ---8847860687589999997504565179961
Q gi|254780307|r 64 ---DTDICLMSAGHAVSSQMSPKIAANGCIVIDN 94 (335)
Q Consensus 64 ---~~Divf~a~p~~~s~~~~~~~~~~g~~VIDl 94 (335)
.--+++=|+.++.-.++.+.+.++|+.||..
T Consensus 544 ~~~~n~v~vD~Tas~~~~~~Y~~~l~~g~~vvt~ 577 (817)
T PRK09436 544 YHLLNPVIVDCTSSAAVADQYADFLAAGFHVVTP 577 (817)
T ss_pred CCCCCCEEEECCCCHHHHHHHHHHHHCCCEEECC
T ss_conf 3898848998888768899999999859969926
No 332
>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed
Probab=78.14 E-value=2.8 Score=20.95 Aligned_cols=12 Identities=0% Similarity=-0.078 Sum_probs=5.1
Q ss_pred CCCHHHHHHHHH
Q ss_conf 687589999997
Q gi|254780307|r 71 SAGHAVSSQMSP 82 (335)
Q Consensus 71 a~p~~~s~~~~~ 82 (335)
..|.+.-.++..
T Consensus 88 ~~~~~~l~~i~~ 99 (477)
T PRK09310 88 DFPKEALQTIRK 99 (477)
T ss_pred CCCHHHHHHHHH
T ss_conf 686889999996
No 333
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein; InterPro: IPR005285 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family includes transporters, whose physiological function is not yet established. These proteins are thought to confer resistance to the chemicals cycloheximide and sulphomethuron methyl, BFA, azole antifungal agents, other antifungal agents: amorolfine and terbinafine. Some of them could serve as an efflux pump of various antibiotics..
Probab=78.00 E-value=0.84 Score=24.13 Aligned_cols=43 Identities=19% Similarity=0.252 Sum_probs=29.6
Q ss_pred CCCCCCCCCCCHHHHC--CCCCCEEEEECCCCCCCCCCC-CCCHHH
Q ss_conf 4322211122001101--787411465215221123211-000000
Q gi|254780307|r 130 CSTIQLVVALKPLHDL--AMIKRVVVTTYQSVSGAGKKG-IDELLA 172 (335)
Q Consensus 130 C~at~~~l~L~PL~~~--~~i~~v~v~s~~g~SGaG~~~-~~eL~~ 172 (335)
||...+----+-|+++ |-+..-.+||+.|+|||||.- ++-|++
T Consensus 830 ~Y~v~ik~e~R~iL~~V~GwvkPG~lTALMG~SGAGKTTLLn~La~ 875 (1466)
T TIGR00956 830 TYEVKIKKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAE 875 (1466)
T ss_pred EEEEEECCCCEEECCCCCEEEECCEEEECCCCCCCCHHHHHHHHHC
T ss_conf 0665430474053157532787785765157887635788864433
No 334
>pfam01262 AlaDh_PNT_C Alanine dehydrogenase/PNT, C-terminal domain. This family now also contains the lysine 2-oxoglutarate reductases.
Probab=77.93 E-value=4.6 Score=19.65 Aligned_cols=92 Identities=17% Similarity=0.213 Sum_probs=49.1
Q ss_pred EEEEEECCCCHHHHHHHHHHHHCCCCEEEEEEEECCCCCCEEEECC-CCEEEEE-ECCH----HHHCCCCEEEECC----
Q ss_conf 1799981667789999999974499807899997476587560027-8158998-7794----3631884786068----
Q gi|254780307|r 3 FKVAVVGATGNVGREMLNIICERGFPISEVVALASERSAGTKVPFG-KETIDVQ-DVKS----YDFSDTDICLMSA---- 72 (335)
Q Consensus 3 ~kvaIiGatG~vG~el~~lL~~~~~p~~~l~~~~s~~~~G~~i~~~-~~~~~~~-~~~~----~~~~~~Divf~a~---- 72 (335)
-+|.|+|+ |.+|+.-.+....-+ .++..+......-+.+... .+.+... ..+. ....++|+++-+.
T Consensus 21 a~vvViG~-Gv~G~~A~~~A~~lG---a~V~v~D~~~~~l~~~~~~~~~~v~~~~~~~~~~l~~~i~~aDvvIgavl~pg 96 (150)
T pfam01262 21 AKVVVIGG-GVVGLGAAATAKGLG---APVTILDVRPERLEQLDSLFAEFVETDIFSNCEYLAEAIAEADLVIGTVLIPG 96 (150)
T ss_pred CEEEEECC-CHHHHHHHHHHHHCC---CEEEEEECCHHHHHHHHHHCCCCCCCHHHCCHHHHHHHHHHCCEEEEEEECCC
T ss_conf 77999898-789999999998679---98999729999999999864762001665379999999743879997203178
Q ss_pred ---CHHHHHHHHHHHCCCCEEEEECCCCHH
Q ss_conf ---758999999750456517996145100
Q gi|254780307|r 73 ---GHAVSSQMSPKIAANGCIVIDNSSAWR 99 (335)
Q Consensus 73 ---p~~~s~~~~~~~~~~g~~VIDlS~~~R 99 (335)
|.=++++.++.. +.|..+||.|.|.-
T Consensus 97 ~~aP~lIt~~mv~~M-kpGsVIVDvaiDqG 125 (150)
T pfam01262 97 ARAPKLVTREMVKTM-KPGSVIVDVAIDQG 125 (150)
T ss_pred CCCCCEECHHHHHHH-CCCCEEEEEECCCC
T ss_conf 869922079999844-79939999620489
No 335
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=77.65 E-value=5.1 Score=19.38 Aligned_cols=33 Identities=15% Similarity=0.217 Sum_probs=23.7
Q ss_pred EEEEEECCCCHHHHHHHHHHHHCCCCEEEEEEEEC
Q ss_conf 17999816677899999999744998078999974
Q gi|254780307|r 3 FKVAVVGATGNVGREMLNIICERGFPISEVVALAS 37 (335)
Q Consensus 3 ~kvaIiGatG~vG~el~~lL~~~~~p~~~l~~~~s 37 (335)
|||.|||+ |..|.....-+.+.+ |..++..+.-
T Consensus 1 MkvVIIG~-G~AG~saA~~l~~~~-~~~~I~v~e~ 33 (443)
T PRK09564 1 MKIIIIGG-TAAGTSAAAKAKRLN-KELEIVVYEK 33 (443)
T ss_pred CEEEEECC-CHHHHHHHHHHHHCC-CCCCEEEEEC
T ss_conf 96999996-099999999998149-3999999948
No 336
>TIGR03443 alpha_am_amid L-aminoadipate-semialdehyde dehydrogenase. Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal.
Probab=77.52 E-value=4.9 Score=19.49 Aligned_cols=16 Identities=13% Similarity=0.152 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHH
Q ss_conf 2367999999999885
Q gi|254780307|r 318 KGAALNAVQIAELVAQ 333 (335)
Q Consensus 318 kGAAg~AVq~anlm~~ 333 (335)
=|-+..|+|.+..+-+
T Consensus 878 GGhSLla~~l~~~ir~ 893 (1389)
T TIGR03443 878 GGHSILATRMIFELRK 893 (1389)
T ss_pred CCCHHHHHHHHHHHHH
T ss_conf 8709999999999999
No 337
>PRK06487 glycerate dehydrogenase; Provisional
Probab=77.43 E-value=5.2 Score=19.34 Aligned_cols=33 Identities=6% Similarity=0.077 Sum_probs=17.3
Q ss_pred HCCCCEEEECCCHHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf 318847860687589999997504565179961451
Q gi|254780307|r 62 FSDTDICLMSAGHAVSSQMSPKIAANGCIVIDNSSA 97 (335)
Q Consensus 62 ~~~~Divf~a~p~~~s~~~~~~~~~~g~~VIDlS~~ 97 (335)
.+++|+++.. ....+++..+++.+ .++|-..+.
T Consensus 43 ~~dadi~i~~-~~~i~~~~l~~ap~--LK~I~~~g~ 75 (317)
T PRK06487 43 LQGAQVAISN-KVALDAAALAAAPQ--LKLILVAAT 75 (317)
T ss_pred HCCCCEEEEC-CCCCCHHHHHCCCC--CEEEEECCC
T ss_conf 4899199968-97128999934999--819988883
No 338
>PRK06180 short chain dehydrogenase; Provisional
Probab=77.27 E-value=3.2 Score=20.61 Aligned_cols=28 Identities=21% Similarity=0.425 Sum_probs=23.6
Q ss_pred CC-EEEEEE-CCCCHHHHHHHHHHHHCCCC
Q ss_conf 96-179998-16677899999999744998
Q gi|254780307|r 1 MT-FKVAVV-GATGNVGREMLNIICERGFP 28 (335)
Q Consensus 1 M~-~kvaIi-GatG~vG~el~~lL~~~~~p 28 (335)
|+ ||+.+| |++.=.|+++.+.|.++++.
T Consensus 1 M~~~KvvlITGassGIG~aiA~~l~~~G~~ 30 (277)
T PRK06180 1 MASMKTWLITGVSSGFGRALAQAALAAGHR 30 (277)
T ss_pred CCCCCEEEECCCCCHHHHHHHHHHHHCCCE
T ss_conf 999988999178739999999999987999
No 339
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=77.27 E-value=5.2 Score=19.31 Aligned_cols=40 Identities=30% Similarity=0.564 Sum_probs=31.0
Q ss_pred CCEEEEEECCCCHHHHHHHHHHHHCCCCEEEEEEEECCCCCCEE
Q ss_conf 96179998166778999999997449980789999747658756
Q gi|254780307|r 1 MTFKVAVVGATGNVGREMLNIICERGFPISEVVALASERSAGTK 44 (335)
Q Consensus 1 M~~kvaIiGatG~vG~el~~lL~~~~~p~~~l~~~~s~~~~G~~ 44 (335)
|.|.|.|||| |-.|.-.-++|.+.+ +++..+-..+..|.+
T Consensus 2 ~~~DVvIVGa-GPAGs~aA~~la~~G---~~VlvlEk~~~~G~k 41 (396)
T COG0644 2 MEYDVVIVGA-GPAGSSAARRLAKAG---LDVLVLEKGSEPGAK 41 (396)
T ss_pred CEEEEEEECC-CHHHHHHHHHHHHCC---CEEEEEECCCCCCCC
T ss_conf 4788999897-889999999998579---929999657889998
No 340
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=77.01 E-value=4.9 Score=19.47 Aligned_cols=36 Identities=28% Similarity=0.363 Sum_probs=27.7
Q ss_pred CCEEEEEECCCCHHHHHHHHHHHHCCCCEEEEEEEECCC
Q ss_conf 961799981667789999999974499807899997476
Q gi|254780307|r 1 MTFKVAVVGATGNVGREMLNIICERGFPISEVVALASER 39 (335)
Q Consensus 1 M~~kvaIiGatG~vG~el~~lL~~~~~p~~~l~~~~s~~ 39 (335)
|+ ||-|||+ |..|....+.|.+.+ |..++..+..+.
T Consensus 1 M~-kiVIIG~-g~AG~~aA~~lrk~~-~~~eItvi~~e~ 36 (438)
T PRK13512 1 MP-KIVVVGA-VAGGATCASQIRRLD-KESDIIIFEKDR 36 (438)
T ss_pred CC-EEEEECC-CHHHHHHHHHHHHHC-CCCCEEEEECCC
T ss_conf 98-0999898-499999999999439-199999996899
No 341
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=76.97 E-value=5.3 Score=19.26 Aligned_cols=32 Identities=34% Similarity=0.596 Sum_probs=24.4
Q ss_pred CCEEEEEECCCCHHHHHHHHHHHHCCCCEEEEEEEE
Q ss_conf 961799981667789999999974499807899997
Q gi|254780307|r 1 MTFKVAVVGATGNVGREMLNIICERGFPISEVVALA 36 (335)
Q Consensus 1 M~~kvaIiGatG~vG~el~~lL~~~~~p~~~l~~~~ 36 (335)
|+++|+|||+ |.+|.-.--.|.++++ ++..+.
T Consensus 3 ~~~~vvIIGg-Gi~Gls~A~~La~~G~---~V~vie 34 (387)
T COG0665 3 MKMDVVIIGG-GIVGLSAAYYLAERGA---DVTVLE 34 (387)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCCC---EEEEEE
T ss_conf 7643999898-6999999999997699---199991
No 342
>TIGR01759 MalateDH-SF1 malate dehydrogenase; InterPro: IPR010945 Malate dehydrogenases catalyse the interconversion of malate and oxaloacetate using dinucleotide cofactors . The enzymes in this entry are found in archaea, bacteria and eukaryotes and fall into two distinct groups. The first group are cytoplamsic, NAD-dependent enzymes which participate in the citric acid cycle (1.1.1.37 from EC). The second group are found in plant chloroplasts, use NADP as cofactor, and participate in the C4 cycle (1.1.1.82 from EC). Structural studies indicate that these enzymes are homodimers with very sinmilar overall topology, though the chloroplast enzymes also have N- and C-terminal extensions, and all contain the classical Rossman fold for NAD(P)H binding , , , . Substrate specificity is determined by a mobile loop at the active site which uses charge balancing to discriminate between the correct substrates (malate and oxaloacetate) and other potential oxo/hydroxyacid substrates the enzyme may encounter within the cell .; GO: 0016615 malate dehydrogenase activity, 0006108 malate metabolic process.
Probab=76.92 E-value=5.3 Score=19.26 Aligned_cols=121 Identities=17% Similarity=0.188 Sum_probs=65.0
Q ss_pred EEEEEECCCCHHHHHHHHHHHHC----CCCEEEEEEEECCCCCCEEE----EC------CCCEEEEEECCHHHHCCCCEE
Q ss_conf 17999816677899999999744----99807899997476587560----02------781589987794363188478
Q gi|254780307|r 3 FKVAVVGATGNVGREMLNIICER----GFPISEVVALASERSAGTKV----PF------GKETIDVQDVKSYDFSDTDIC 68 (335)
Q Consensus 3 ~kvaIiGatG~vG~el~~lL~~~----~~p~~~l~~~~s~~~~G~~i----~~------~~~~~~~~~~~~~~~~~~Div 68 (335)
.||+|=||.|-+|=-|+=+++.= ..-.+.|.+|..+...+..- +- .-..+.+.+=-.+.|+++|.+
T Consensus 4 ~rV~VTGAAGQI~Y~Ll~~iA~G~~fG~Dqpv~L~LLdIP~A~~~LeGV~MEL~DCAFPlL~~v~~T~~p~eAF~dvD~A 83 (329)
T TIGR01759 4 VRVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLDIPQAMKALEGVVMELEDCAFPLLAGVVATTDPEEAFKDVDVA 83 (329)
T ss_pred EEEEEECCHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCCCEECCCHHHHHCCCCEE
T ss_conf 37997374467899998898556104889846888607723311334435535306452235112216868751898757
Q ss_pred EECC--CHHHHHHHHHHHCCCCEEEEECCCCHHCCCCCCCCCCCHHHHHHCCCCCCCEECCCCCCCCCCCCC
Q ss_conf 6068--758999999750456517996145100112111236410111110333431212676432221112
Q gi|254780307|r 69 LMSA--GHAVSSQMSPKIAANGCIVIDNSSAWRYDSDVPLIVPEVNPQTISLASRKNIIANPNCSTIQLVVA 138 (335)
Q Consensus 69 f~a~--p~~~s~~~~~~~~~~g~~VIDlS~~~R~~~d~p~~lPein~~~i~~~~~~~~VanPgC~at~~~l~ 138 (335)
|+.. |-..-+|=.+.|..+ .+|+-.-+- =+|...-++. +--+|.|| |-|.|+++.
T Consensus 84 lLvGa~PRK~GMER~DLL~~N-g~IF~~QG~------------aLn~~Ak~~v-KVLVVGNP-aNTNaLIa~ 140 (329)
T TIGR01759 84 LLVGAFPRKPGMERRDLLSKN-GKIFKEQGK------------ALNKVAKKDV-KVLVVGNP-ANTNALIAS 140 (329)
T ss_pred EEECCCCCCCCCCHHHHHHHC-CHHHHHHHH------------HHHHHCCCCC-EEEEECCC-CHHHHHHHH
T ss_conf 761366895884479998722-254687999------------9998618985-69985298-627999999
No 343
>PRK08774 consensus
Probab=76.66 E-value=3.5 Score=20.36 Aligned_cols=28 Identities=32% Similarity=0.515 Sum_probs=22.9
Q ss_pred CC--EEEEEECCCCHHHHHHHHHHHHCCCCE
Q ss_conf 96--179998166778999999997449980
Q gi|254780307|r 1 MT--FKVAVVGATGNVGREMLNIICERGFPI 29 (335)
Q Consensus 1 M~--~kvaIiGatG~vG~el~~lL~~~~~p~ 29 (335)
|+ +.|.|+|+ |.||.-+--.|..++++.
T Consensus 1 M~~~~DVlIVGg-GpvGl~lA~~La~~G~~v 30 (402)
T PRK08774 1 MTHPHDVLIVGG-GLVGSSLAIALDRIGLDV 30 (402)
T ss_pred CCCCCCEEEECC-CHHHHHHHHHHHCCCCCE
T ss_conf 989987899991-699999999996689978
No 344
>PRK07707 consensus
Probab=76.66 E-value=3.6 Score=20.32 Aligned_cols=27 Identities=33% Similarity=0.724 Sum_probs=22.6
Q ss_pred CCEEEEEE-CCCCHHHHHHHHHHHHCCCC
Q ss_conf 96179998-16677899999999744998
Q gi|254780307|r 1 MTFKVAVV-GATGNVGREMLNIICERGFP 28 (335)
Q Consensus 1 M~~kvaIi-GatG~vG~el~~lL~~~~~p 28 (335)
|+ |++|| |+++=+|+++.+.|.+++..
T Consensus 1 M~-KvalVTG~s~GIG~aia~~la~~Ga~ 28 (239)
T PRK07707 1 MK-KYALVTGASGGIGQAISKQLAQDGYT 28 (239)
T ss_pred CC-CEEEEECCCCHHHHHHHHHHHHCCCE
T ss_conf 99-89999668878999999999987998
No 345
>TIGR00455 apsK adenylylsulfate kinase; InterPro: IPR002891 Enzyme that catalyses the phosphorylation of adenylylsulphate to 3'-phosphoadenylylsulphate. This domain contains an ATP binding P-loop motif .; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity transferring phosphorus-containing groups, 0000103 sulfate assimilation.
Probab=76.62 E-value=1.6 Score=22.47 Aligned_cols=89 Identities=19% Similarity=0.127 Sum_probs=42.1
Q ss_pred CCCCCCCCCCCCC-----CHHHH--HHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHE----EEEEEEEEC
Q ss_conf 1522112321100-----00000--000001245544445510137404225532347200001101----121000102
Q gi|254780307|r 156 YQSVSGAGKKGID-----ELLAQ--TKAFLAKKTIENRVFTKNIAFNVIPHIDVFMDGGSTKEEWKV----LVETQKILD 224 (335)
Q Consensus 156 ~~g~SGaG~~~~~-----eL~~q--~~~~~~~~~~~~~~~~~~la~n~iP~i~~~~~~g~~~ee~k~----~~E~~kil~ 224 (335)
++|.||+||+-+. .|..+ ...+|.+.+ +-+++.+ +-|++.++++. +.|+.|.|-
T Consensus 24 lTGLSGsGKsTiA~Al~~~L~~~G~~~~~LDGDn---------vR~gL~~------dLGFS~~DR~eNIRRigEVa~L~~ 88 (187)
T TIGR00455 24 LTGLSGSGKSTIANALEKKLEKKGYRVYVLDGDN---------VRHGLNK------DLGFSEEDRKENIRRIGEVAKLLV 88 (187)
T ss_pred EECCCCCHHHHHHHHHHHHHHHCCCEEEEECCCE---------EECCCCC------CCCCCHHHHCCCCCEEHHHHHHHH
T ss_conf 1168856357999999999996697499975863---------4247788------888885670568835326467776
Q ss_pred CCCCCCCCCEEEEEEECCEEEEEEEECCCCCHHHHHHHHHHC--CCCEEEC
Q ss_conf 343221120011211021579876724658789998731006--9838810
Q gi|254780307|r 225 PNIKVSCTAARVPVFIGHAESVNIEFEKDISIKDAVAAINKS--KGCIVVD 273 (335)
Q Consensus 225 ~~~~v~~t~~~vPv~rG~~~ti~i~l~~~~~~~~i~~~~~~~--~~~~~~~ 273 (335)
. .|...-+.+=...-.+-+++++...++ .++.++.
T Consensus 89 ~--------------~G~i~ltsfISPyR~~R~~vR~~~~~~Gl~F~Evfv 125 (187)
T TIGR00455 89 R--------------NGVIVLTSFISPYRADRQMVRELIEEGGLEFIEVFV 125 (187)
T ss_pred H--------------CCEEEEEEEECCCHHHHHHHHHHHHCCCEEEEEEEC
T ss_conf 4--------------793899842177666789998875405736899721
No 346
>PRK01911 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=76.56 E-value=5.5 Score=19.19 Aligned_cols=88 Identities=15% Similarity=0.143 Sum_probs=49.8
Q ss_pred EEEEEECCCCH-----HHHHHHHHHHHCCCCEEEEEEEECCCCCCEEEECCCCEEEEEECCHHHHCCCCEEEECCCHHHH
Q ss_conf 17999816677-----8999999997449980789999747658756002781589987794363188478606875899
Q gi|254780307|r 3 FKVAVVGATGN-----VGREMLNIICERGFPISEVVALASERSAGTKVPFGKETIDVQDVKSYDFSDTDICLMSAGHAVS 77 (335)
Q Consensus 3 ~kvaIiGatG~-----vG~el~~lL~~~~~p~~~l~~~~s~~~~G~~i~~~~~~~~~~~~~~~~~~~~Divf~a~p~~~s 77 (335)
|||||+|-..- .-++|++.|.++++ ++..- ++.+...-.............+....++|+++.-.|++.-
T Consensus 1 MKIaIigk~~~~~~~~~~~~Li~~L~~~g~---~v~le--~~~a~~l~~~~~~~~~~~~~~~~~~~~~Dlvi~iGGDGT~ 75 (290)
T PRK01911 1 MKIAIFGQTYQASKSPHIKRLFELLEEHGA---EIYIE--EEFLNFLTQDLKFEPKYKGFFDGNNFDFDMVISIGGDGTF 75 (290)
T ss_pred CEEEEECCCCCHHHHHHHHHHHHHHHHCCC---EEEEE--HHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEECCCHHH
T ss_conf 999998888984799999999999998899---89997--6897877651256643123211357777799997876899
Q ss_pred HHHHHHHCCCCEEEEECC
Q ss_conf 999975045651799614
Q gi|254780307|r 78 SQMSPKIAANGCIVIDNS 95 (335)
Q Consensus 78 ~~~~~~~~~~g~~VIDlS 95 (335)
-..+..+.+.++.|+-..
T Consensus 76 L~a~~~~~~~~iPilGiN 93 (290)
T PRK01911 76 LRAAARVGNSGIPILGIN 93 (290)
T ss_pred HHHHHHHHHCCCCEEEEE
T ss_conf 999998612599689994
No 347
>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase. The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional
Probab=76.47 E-value=5.5 Score=19.18 Aligned_cols=92 Identities=16% Similarity=0.314 Sum_probs=48.1
Q ss_pred EEEEEECCCCHHHHHHHHHHHHCCCCEEEEEEEECCC----CCCEEEECCCCEEEEEEC---CHHHHCCCCEEEECCCHH
Q ss_conf 1799981667789999999974499807899997476----587560027815899877---943631884786068758
Q gi|254780307|r 3 FKVAVVGATGNVGREMLNIICERGFPISEVVALASER----SAGTKVPFGKETIDVQDV---KSYDFSDTDICLMSAGHA 75 (335)
Q Consensus 3 ~kvaIiGatG~vG~el~~lL~~~~~p~~~l~~~~s~~----~~G~~i~~~~~~~~~~~~---~~~~~~~~Divf~a~p~~ 75 (335)
.++.|+|-|-.||+=|-.||..++ ..+..+.... ..+..+.. ....+... ...-.+.+|+++.|.|..
T Consensus 63 k~vvVIGRS~iVGkPla~LL~~~~---ATVt~~d~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~aDIvI~avg~p 137 (197)
T cd01079 63 KTITIINRSEVVGRPLAALLANDG---ARVYSVDINGIQVFTRGESIRH--EKHHVTDEEAMTLDCLSQSDVVITGVPSP 137 (197)
T ss_pred CEEEEECCCCCCCHHHHHHHHHCC---CEEEEECCCCEEEEECCCCCCC--EEEEECCCCHHHHHHCCCCCEEEECCCCC
T ss_conf 989998987315488999997389---9677503442146404665221--24564142100565423479999887877
Q ss_pred HHHHHHHHHCCCCEEEEECCCCHHC
Q ss_conf 9999997504565179961451001
Q gi|254780307|r 76 VSSQMSPKIAANGCIVIDNSSAWRY 100 (335)
Q Consensus 76 ~s~~~~~~~~~~g~~VIDlS~~~R~ 100 (335)
.- .+-..+.+.|..|||.+.+-.+
T Consensus 138 ~~-~i~~~~vk~GaivIDvg~~~~~ 161 (197)
T cd01079 138 NY-KVPTELLKDGAICINFASIKNF 161 (197)
T ss_pred CC-CCCHHHCCCCCEEEEECCCCCC
T ss_conf 66-5667554489689981684366
No 348
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=76.23 E-value=1.8 Score=22.06 Aligned_cols=104 Identities=21% Similarity=0.330 Sum_probs=53.8
Q ss_pred EEEE-CCCCHHHHHHHHHHHHCCCCEEEEEEEECCCCCCEEEECCCCEEEEEECCHHHHCCCCEEEECCCHHHHHHHHHH
Q ss_conf 9998-166778999999997449980789999747658756002781589987794363188478606875899999975
Q gi|254780307|r 5 VAVV-GATGNVGREMLNIICERGFPISEVVALASERSAGTKVPFGKETIDVQDVKSYDFSDTDICLMSAGHAVSSQMSPK 83 (335)
Q Consensus 5 vaIi-GatG~vG~el~~lL~~~~~p~~~l~~~~s~~~~G~~i~~~~~~~~~~~~~~~~~~~~Divf~a~p~~~s~~~~~~ 83 (335)
|+|+ +.+---..++.+.|.+.+++.+|+.+ .++. +.+.|. .+... + + +-+..-.+.=.+.+-+.+
T Consensus 13 vaIlR~~~~~~a~~~~~al~~~Gi~~iEVTl-~tp~-a~~~I~---------~l~~~-~-~-~~~~iGAGTVlt~e~~~~ 78 (206)
T PRK09140 13 IAILRGITPDEALAHVGALIEAGFRAIEIPL-NSPD-PFDSIA---------ALVKA-L-G-DDALIGAGTVLSPEQVDR 78 (206)
T ss_pred EEEEECCCHHHHHHHHHHHHHCCCCEEEEEC-CCCC-HHHHHH---------HHHHH-C-C-CCEEEEEEECCCHHHHHH
T ss_conf 9999589999999999999986998899917-9976-999999---------99996-7-9-865998620467999999
Q ss_pred HCCCCEEEEECCCCHHCCCCCCCCCCCHHHHHHCCCCCCCEECCCCCCCCCCC
Q ss_conf 04565179961451001121112364101111103334312126764322211
Q gi|254780307|r 84 IAANGCIVIDNSSAWRYDSDVPLIVPEVNPQTISLASRKNIIANPNCSTIQLV 136 (335)
Q Consensus 84 ~~~~g~~VIDlS~~~R~~~d~p~~lPein~~~i~~~~~~~~VanPgC~at~~~ 136 (335)
+.++|...| +-|.++++.++.+++.++...|||.+-.=+
T Consensus 79 ai~aGA~Fi--------------VSP~~~~~vi~~a~~~~i~~iPG~~TPsEi 117 (206)
T PRK09140 79 LADAGGRLI--------------VTPNIDPEVIRRAVAYGMTVMPGVATPTEA 117 (206)
T ss_pred HHHCCCCEE--------------ECCCCCHHHHHHHHHCCCCCCCCCCCHHHH
T ss_conf 998599999--------------999998999999998299652785999999
No 349
>PRK08013 hypothetical protein; Provisional
Probab=76.21 E-value=3.8 Score=20.17 Aligned_cols=28 Identities=32% Similarity=0.487 Sum_probs=23.0
Q ss_pred CC-EEEEEECCCCHHHHHHHHHHHHCCCCE
Q ss_conf 96-179998166778999999997449980
Q gi|254780307|r 1 MT-FKVAVVGATGNVGREMLNIICERGFPI 29 (335)
Q Consensus 1 M~-~kvaIiGatG~vG~el~~lL~~~~~p~ 29 (335)
|+ +.|.|+|+ |.||.-+--.|..+++..
T Consensus 1 M~~~DV~IvGa-GpvGl~lA~~La~~G~~v 29 (400)
T PRK08013 1 MQSVDVAIVGG-GMVGLAVACGLQGSGLRV 29 (400)
T ss_pred CCCCCEEEECC-CHHHHHHHHHHHHCCCCE
T ss_conf 99678899993-599999999997189958
No 350
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=76.10 E-value=5.6 Score=19.13 Aligned_cols=29 Identities=24% Similarity=0.510 Sum_probs=24.1
Q ss_pred CCEEEEEECCCCHHHHHHHHHHHHCCCCEE
Q ss_conf 961799981667789999999974499807
Q gi|254780307|r 1 MTFKVAVVGATGNVGREMLNIICERGFPIS 30 (335)
Q Consensus 1 M~~kvaIiGatG~vG~el~~lL~~~~~p~~ 30 (335)
|.+.|+|||+ |.+|.-.---|.++++.+.
T Consensus 2 ~r~DVvVIGa-Gi~G~s~A~~La~~G~~V~ 30 (377)
T PRK11259 2 MRYDVIVIGL-GSMGSAAGYYLARAGLRVL 30 (377)
T ss_pred CEEEEEEECC-CHHHHHHHHHHHHCCCCEE
T ss_conf 5048999995-2999999999997899599
No 351
>pfam00743 FMO-like Flavin-binding monooxygenase-like. This family includes FMO proteins and cyclohexanone monooxygenase.
Probab=76.03 E-value=5.6 Score=19.11 Aligned_cols=40 Identities=30% Similarity=0.367 Sum_probs=28.3
Q ss_pred EEEEEECCCCHHHHHHHHHHHHCCCCEEEEEEEECCCCCCEEEE
Q ss_conf 17999816677899999999744998078999974765875600
Q gi|254780307|r 3 FKVAVVGATGNVGREMLNIICERGFPISEVVALASERSAGTKVP 46 (335)
Q Consensus 3 ~kvaIiGatG~vG~el~~lL~~~~~p~~~l~~~~s~~~~G~~i~ 46 (335)
-||||||| |--|..-++-|.+.++ +...+-.+...|=.-.
T Consensus 2 KrVAIIGA-G~SGL~a~K~lle~G~---~~~~FE~~~~iGG~W~ 41 (532)
T pfam00743 2 KKVAVIGA-GVSGLSSIKCCLEEGL---EPTCFERSDDIGGLWR 41 (532)
T ss_pred CEEEEECC-CHHHHHHHHHHHHCCC---CEEEEECCCCCCCCCC
T ss_conf 87999897-2999999999987799---8299977999735066
No 352
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=75.97 E-value=3.7 Score=20.20 Aligned_cols=28 Identities=29% Similarity=0.482 Sum_probs=23.6
Q ss_pred CCEEEEEECCCCHHHHHHHHHHHHCCCCE
Q ss_conf 96179998166778999999997449980
Q gi|254780307|r 1 MTFKVAVVGATGNVGREMLNIICERGFPI 29 (335)
Q Consensus 1 M~~kvaIiGatG~vG~el~~lL~~~~~p~ 29 (335)
|...|.|+|| |.||.-+--.|..++++.
T Consensus 1 m~~DV~IvGa-GpvGl~lAl~L~~~G~~v 28 (405)
T PRK05714 1 MRADLLIVGA-GMVGSALALALEGSGLEV 28 (405)
T ss_pred CCCCEEEECC-CHHHHHHHHHHHCCCCCE
T ss_conf 9988999990-599999999996189978
No 353
>KOG2742 consensus
Probab=75.92 E-value=0.8 Score=24.25 Aligned_cols=91 Identities=21% Similarity=0.229 Sum_probs=57.6
Q ss_pred CCEEEEEECCCCHHHHHHHHHHHHCCCCEEEEEEEECCCCCCEEEECCCCEE----EEEECCHHHH-CCCCEEEECCCHH
Q ss_conf 9617999816677899999999744998078999974765875600278158----9987794363-1884786068758
Q gi|254780307|r 1 MTFKVAVVGATGNVGREMLNIICERGFPISEVVALASERSAGTKVPFGKETI----DVQDVKSYDF-SDTDICLMSAGHA 75 (335)
Q Consensus 1 M~~kvaIiGatG~vG~el~~lL~~~~~p~~~l~~~~s~~~~G~~i~~~~~~~----~~~~~~~~~~-~~~Divf~a~p~~ 75 (335)
|+=-|+|+| ||..-+.++-+|.+. | +++.++......-.. ....+. ....+++.-+ .++|+++.++|.-
T Consensus 1 m~Pgv~v~G-Tg~~arv~iP~l~e~--~-f~v~A~w~Rt~~ea~--a~aa~~~v~~~t~~~deiLl~~~vdlv~i~lpp~ 74 (367)
T KOG2742 1 MSPGVGVFG-TGIFARVLIPLLKEE--G-FEVKAIWGRTKTEAK--AKAAEMNVRKYTSRLDEILLDQDVDLVCISLPPP 74 (367)
T ss_pred CCCCEEEEC-CCHHHHHHHHHHHHC--C-CHHHHHHCHHHHHHH--HHHHCCCHHHCCCCCHHHHCCCCCCEEEECCCCC
T ss_conf 998415741-571476652465633--5-007656341456777--7541332111055300544367744367516874
Q ss_pred HHHHHHHHHCCCCEEEEECCCC
Q ss_conf 9999997504565179961451
Q gi|254780307|r 76 VSSQMSPKIAANGCIVIDNSSA 97 (335)
Q Consensus 76 ~s~~~~~~~~~~g~~VIDlS~~ 97 (335)
...++..+....|..||=--.+
T Consensus 75 ~~~eI~~kal~~Gk~Vvcek~a 96 (367)
T KOG2742 75 LHAEIVVKALGIGKHVVCEKPA 96 (367)
T ss_pred CCEEEEECCCCCCCEEEECCCC
T ss_conf 0104564023577407852677
No 354
>KOG2015 consensus
Probab=75.84 E-value=5.7 Score=19.08 Aligned_cols=130 Identities=19% Similarity=0.326 Sum_probs=71.8
Q ss_pred CCEEEEEECCCCHHHHHHHHHHHHCCCCEEEEEEEEC-------------CCCCCEEEE----------CCCCE-----E
Q ss_conf 9617999816677899999999744998078999974-------------765875600----------27815-----8
Q gi|254780307|r 1 MTFKVAVVGATGNVGREMLNIICERGFPISEVVALAS-------------ERSAGTKVP----------FGKET-----I 52 (335)
Q Consensus 1 M~~kvaIiGatG~vG~el~~lL~~~~~p~~~l~~~~s-------------~~~~G~~i~----------~~~~~-----~ 52 (335)
|.-||-|+|| |-.|-||++-|.-.+|-.+.+.-..+ ++..|+.-. +.+-. -
T Consensus 39 ~~~kiLviGA-GGLGCElLKnLal~gF~~~~viDmDTId~sNLNRQFLF~~~DiG~pKAqvAA~fvn~Rvp~~~v~~h~~ 117 (422)
T KOG2015 39 QDCKILVIGA-GGLGCELLKNLALSGFRQLHVIDMDTIDLSNLNRQFLFRESDIGEPKAQVAAEFVNRRVPGCVVVPHRQ 117 (422)
T ss_pred HHCCEEEECC-CCCCHHHHHHHHHHCCCEEEEEEECCEECCCCHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEC
T ss_conf 6181899806-863279987677624551689850325314410232303311685368999999973488727744002
Q ss_pred EEEECCHHHHCCCCEEEECCCHHHHHHHHHH----HCCCC-------EEEEECCCCHHCCCCCCCCCCCHHH---HHHCC
Q ss_conf 9987794363188478606875899999975----04565-------1799614510011211123641011---11103
Q gi|254780307|r 53 DVQDVKSYDFSDTDICLMSAGHAVSSQMSPK----IAANG-------CIVIDNSSAWRYDSDVPLIVPEVNP---QTISL 118 (335)
Q Consensus 53 ~~~~~~~~~~~~~Divf~a~p~~~s~~~~~~----~~~~g-------~~VIDlS~~~R~~~d~p~~lPein~---~~i~~ 118 (335)
.++|....-.++.|+++.++.+=.++.|... +...| +..||-... -+..++..++|.+.. ..++.
T Consensus 118 kIqd~~~~FYk~F~~iicGLDsIeaRRwIN~mL~~l~~~g~~d~~~iiPlIDGGtE-G~KG~arvI~Pg~TaCieCtldl 196 (422)
T KOG2015 118 KIQDKPISFYKRFDLIICGLDSIEARRWINGMLVRLKLEGNYDISSIIPLIDGGTE-GFKGHARVIYPGITACIECTLDL 196 (422)
T ss_pred CHHCCCHHHHHHHCEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCC-CCCCEEEEEECCCCHHHHHHHHH
T ss_conf 12018978986415677534440678789999999986068774442235625751-33450589805860788757864
Q ss_pred CCCCCEECCCCCCCCC
Q ss_conf 3343121267643222
Q gi|254780307|r 119 ASRKNIIANPNCSTIQ 134 (335)
Q Consensus 119 ~~~~~~VanPgC~at~ 134 (335)
... -++-|=|+...
T Consensus 197 ypp--qvs~P~CTiAn 210 (422)
T KOG2015 197 YPP--QVSYPMCTIAN 210 (422)
T ss_pred CCC--CCCCCCCEECC
T ss_conf 675--46766210048
No 355
>COG0761 lytB 4-Hydroxy-3-methylbut-2-enyl diphosphate reductase IspH [Lipid metabolism]
Probab=75.77 E-value=1.8 Score=22.11 Aligned_cols=92 Identities=17% Similarity=0.243 Sum_probs=52.7
Q ss_pred EEEEEECCCCHHHHH-----HHH-HHHHCCCCEEEEEEEECCCCCCEEEECCCCEEEEEECCHHHHCCCCEEEECCCHHH
Q ss_conf 179998166778999-----999-99744998078999974765875600278158998779436318847860687589
Q gi|254780307|r 3 FKVAVVGATGNVGRE-----MLN-IICERGFPISEVVALASERSAGTKVPFGKETIDVQDVKSYDFSDTDICLMSAGHAV 76 (335)
Q Consensus 3 ~kvaIiGatG~vG~e-----l~~-lL~~~~~p~~~l~~~~s~~~~G~~i~~~~~~~~~~~~~~~~~~~~Divf~a~p~~~ 76 (335)
|+|-+....||-.+. +.+ .|.+++-|..-..-+--.+..=..+...+ -+.++++++.+ .+.-++|.| ||+
T Consensus 2 ~~I~lA~prGFCaGV~RAI~ive~al~~~g~pIyv~~eIVHN~~Vv~~L~~~g-~~fve~l~e~p-~~~~VIfsA--HGV 77 (294)
T COG0761 2 MKILLAKPRGFCAGVDRAIQIVERALEEYGAPIYVRHEIVHNRYVVDRLREKG-AIFVEELDEVP-DGATVIFSA--HGV 77 (294)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHCC-CEECCCCCCCC-CCCEEEEEC--CCC
T ss_conf 36998358863040899999999999971998589700225889999999759-88613210299-998799977--999
Q ss_pred HHHHHHHHCCCCEEEEECCCCH
Q ss_conf 9999975045651799614510
Q gi|254780307|r 77 SSQMSPKIAANGCIVIDNSSAW 98 (335)
Q Consensus 77 s~~~~~~~~~~g~~VIDlS~~~ 98 (335)
|.+..+.+.+.|.+|||..-.+
T Consensus 78 s~~v~~~a~~r~l~v~DATCPl 99 (294)
T COG0761 78 SPAVREEAKERGLKVIDATCPL 99 (294)
T ss_pred CHHHHHHHHHCCCEEEECCCCC
T ss_conf 9899999987799799468975
No 356
>KOG0069 consensus
Probab=75.69 E-value=5.8 Score=19.05 Aligned_cols=16 Identities=25% Similarity=0.133 Sum_probs=11.0
Q ss_pred CCCHHHHHHHHHHCCC
Q ss_conf 5878999873100698
Q gi|254780307|r 253 DISIKDAVAAINKSKG 268 (335)
Q Consensus 253 ~~~~~~i~~~~~~~~~ 268 (335)
=++.+++.+++++.+-
T Consensus 257 iide~~l~eaL~sG~i 272 (336)
T KOG0069 257 IIDEEALVEALKSGKI 272 (336)
T ss_pred CCCHHHHHHHHHCCCC
T ss_conf 0259999978753985
No 357
>cd02201 FtsZ_type1 FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes. FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.
Probab=75.61 E-value=5.8 Score=19.04 Aligned_cols=98 Identities=19% Similarity=0.383 Sum_probs=58.1
Q ss_pred EEEEEECCCCHHHHHHHHHHHHCCCCEEEEEEEECCCCC------CEEEECCCCEE---------------EEEECCH--
Q ss_conf 179998166778999999997449980789999747658------75600278158---------------9987794--
Q gi|254780307|r 3 FKVAVVGATGNVGREMLNIICERGFPISEVVALASERSA------GTKVPFGKETI---------------DVQDVKS-- 59 (335)
Q Consensus 3 ~kvaIiGatG~vG~el~~lL~~~~~p~~~l~~~~s~~~~------G~~i~~~~~~~---------------~~~~~~~-- 59 (335)
.||.|+|- |=.|...+..|.+.+...+++..+-++..+ -.++..+.+.. ..++.+.
T Consensus 1 ~kIkViGV-GG~G~N~vn~m~~~~~~~v~~iaiNTD~q~L~~~~~~~ki~iG~~~t~GlGaGg~Pe~G~~AA~e~~~~I~ 79 (304)
T cd02201 1 AKIKVIGV-GGGGGNAVNRMIESGLEGVEFIAANTDAQALAKSKAPNKIQLGKELTRGLGAGGDPEVGRKAAEESREEIK 79 (304)
T ss_pred CCEEEEEE-CCCHHHHHHHHHHCCCCCCEEEEEECCHHHHHCCCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 94699987-88129999999983999855999908799984599982797087656889888884799999998899999
Q ss_pred HHHCCCCEEEECC------CHHHHHHHHHHHCCCCEEEEEC-CCCHHCC
Q ss_conf 3631884786068------7589999997504565179961-4510011
Q gi|254780307|r 60 YDFSDTDICLMSA------GHAVSSQMSPKIAANGCIVIDN-SSAWRYD 101 (335)
Q Consensus 60 ~~~~~~Divf~a~------p~~~s~~~~~~~~~~g~~VIDl-S~~~R~~ 101 (335)
..+.+.|+||.++ +++++.-+++.+.+.|..+|-. +-.|+++
T Consensus 80 ~~l~~~d~vfi~AGmGGGTGTGaaPviA~~Ake~g~LtvavVT~PF~~E 128 (304)
T cd02201 80 EALEGADMVFITAGMGGGTGTGAAPVIAKIAKEMGALTVAVVTKPFSFE 128 (304)
T ss_pred HHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCHHHH
T ss_conf 9973687699994257986631789999988667985999996785775
No 358
>COG5495 Uncharacterized conserved protein [Function unknown]
Probab=75.54 E-value=5.1 Score=19.37 Aligned_cols=89 Identities=20% Similarity=0.267 Sum_probs=50.8
Q ss_pred CEEEEEECCCCHHHHHHHHHHHHCCCCEEEEEEEECCCCC-CEEEE--CCCCEEEEEECCHHHHCCCCEEEECCCHHHHH
Q ss_conf 6179998166778999999997449980789999747658-75600--27815899877943631884786068758999
Q gi|254780307|r 2 TFKVAVVGATGNVGREMLNIICERGFPISEVVALASERSA-GTKVP--FGKETIDVQDVKSYDFSDTDICLMSAGHAVSS 78 (335)
Q Consensus 2 ~~kvaIiGatG~vG~el~~lL~~~~~p~~~l~~~~s~~~~-G~~i~--~~~~~~~~~~~~~~~~~~~Divf~a~p~~~s~ 78 (335)
.|+|+|+|+ |.+|+-++.. . +|-..+...++|.+-. -+.++ +..+.+.++.. ..-.+++|.-.|...-.
T Consensus 10 ~~~v~~igt-Grl~ra~~~r-a--~h~~~~cs~i~srS~~~a~~LaE~~~a~p~d~~~~----ael~~~vfv~vpd~~~~ 81 (289)
T COG5495 10 RVVVGIVGT-GRLGRAALLR-A--DHVVVACSAISSRSRDRAQNLAETYVAPPLDVAKS----AELLLLVFVDVPDALYS 81 (289)
T ss_pred EEEEEEEEC-CHHHHHHHHH-H--HHHHEEEHHHHHCCHHHHHHHHHHCCCCCCCHHHC----HHHHCEEEECCCHHHHH
T ss_conf 158887604-4278999987-4--00321211343217899862044217995101207----34515478626088888
Q ss_pred HH-HHHHCCCCEEEEECCCCH
Q ss_conf 99-975045651799614510
Q gi|254780307|r 79 QM-SPKIAANGCIVIDNSSAW 98 (335)
Q Consensus 79 ~~-~~~~~~~g~~VIDlS~~~ 98 (335)
+. +..+---|..|+-.|++.
T Consensus 82 ~vaa~~~~rpg~iv~HcSga~ 102 (289)
T COG5495 82 GVAATSLNRPGTIVAHCSGAN 102 (289)
T ss_pred HHHHHCCCCCCEEEEECCCCC
T ss_conf 888760468983899746887
No 359
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=75.30 E-value=5.9 Score=18.99 Aligned_cols=37 Identities=30% Similarity=0.551 Sum_probs=26.5
Q ss_pred EEEEEECCCCHHHHHHHHHHHHCCCCEEEEEEE-ECCCCCCE
Q ss_conf 179998166778999999997449980789999-74765875
Q gi|254780307|r 3 FKVAVVGATGNVGREMLNIICERGFPISEVVAL-ASERSAGT 43 (335)
Q Consensus 3 ~kvaIiGatG~vG~el~~lL~~~~~p~~~l~~~-~s~~~~G~ 43 (335)
|||+|+|| |+.|..--..|.+.++ ++..+ +.++-.||
T Consensus 1 ~rVai~Ga-G~AgL~~a~~La~~g~---~vt~~ea~~~~GGk 38 (485)
T COG3349 1 MRVAIAGA-GLAGLAAAYELADAGY---DVTLYEARDRLGGK 38 (485)
T ss_pred CEEEEECC-CHHHHHHHHHHHHCCC---CEEEEECCCCCCCE
T ss_conf 92899746-2788899999986898---53998426766861
No 360
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=75.20 E-value=5.9 Score=18.98 Aligned_cols=23 Identities=9% Similarity=-0.149 Sum_probs=11.5
Q ss_pred CCCCCCCCCCCCCCHHHHCCCCC
Q ss_conf 67643222111220011017874
Q gi|254780307|r 127 NPNCSTIQLVVALKPLHDLAMIK 149 (335)
Q Consensus 127 nPgC~at~~~l~L~PL~~~~~i~ 149 (335)
.-.++.-|...++.-|++.+.++
T Consensus 134 ~~~~~~PcTp~av~~lL~~y~i~ 156 (288)
T PRK10792 134 RAPRLRPCTPRGIVTLLERYNID 156 (288)
T ss_pred CCCCCCCCCHHHHHHHHHHCCCC
T ss_conf 99866787199999999974756
No 361
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=75.18 E-value=4.5 Score=19.68 Aligned_cols=35 Identities=14% Similarity=0.272 Sum_probs=27.7
Q ss_pred EEEEECCCCHHHHHHHHHHHHCCCCEEEEEEEECCC
Q ss_conf 799981667789999999974499807899997476
Q gi|254780307|r 4 KVAVVGATGNVGREMLNIICERGFPISEVVALASER 39 (335)
Q Consensus 4 kvaIiGatG~vG~el~~lL~~~~~p~~~l~~~~s~~ 39 (335)
+|-|||+ |+.|....+.|.++..|..++..++-++
T Consensus 1 hiVIvGg-G~aG~~~a~~L~~~~~~~~~ItLId~~~ 35 (364)
T TIGR03169 1 HLVLIGG-GHTHALVLRRWAMKPLPGVRVTLINPSS 35 (364)
T ss_pred CEEEECC-HHHHHHHHHHHCCCCCCCCEEEEECCCC
T ss_conf 9999996-0999999999704178998399999988
No 362
>TIGR01179 galE UDP-glucose 4-epimerase; InterPro: IPR005886 Synonym: UDP-galactose 4-epimerase UDP-glucose 4-epimerase (5.1.3.2 from EC) interconverts UDP-glucose and UDP-galactose which are precursors of glucose- and galactose-containing exopolysaccharides (EPS). A set of related proteins, some of which are tentatively identified as UDP-glucose-4-epimerase in Thermotoga maritima, Bacillus halodurans, and several archaea, but deeply branched from this set and lacking experimental evidence, are excluded and described by a separate model. ; GO: 0003978 UDP-glucose 4-epimerase activity, 0006012 galactose metabolic process.
Probab=75.15 E-value=2.4 Score=21.38 Aligned_cols=102 Identities=18% Similarity=0.294 Sum_probs=52.6
Q ss_pred EEEEECCCCHHHHHHHHHHHHCCCCEEEEEEEE-CCCCCCEEEE-CCCCE--EEEEECCHH-------H----HCCCCEE
Q ss_conf 799981667789999999974499807899997-4765875600-27815--899877943-------6----3188478
Q gi|254780307|r 4 KVAVVGATGNVGREMLNIICERGFPISEVVALA-SERSAGTKVP-FGKET--IDVQDVKSY-------D----FSDTDIC 68 (335)
Q Consensus 4 kvaIiGatG~vG~el~~lL~~~~~p~~~l~~~~-s~~~~G~~i~-~~~~~--~~~~~~~~~-------~----~~~~Div 68 (335)
||-|.|++||+|.--.+-|.+.+|-.+=+==|+ ++.++=+.++ ..++. +...|+.+. . -.++|-|
T Consensus 1 ~iLVTGGAGYIGSHt~~~Ll~~G~ev~vlDNLs~G~~~~l~~~~~~~G~~~~fv~gDL~D~~~l~~~f~kqql~~~idAV 80 (341)
T TIGR01179 1 KILVTGGAGYIGSHTVRQLLESGYEVVVLDNLSNGSAEALKRGEEITGKEVTFVEGDLRDRELLRRVFEKQQLEHKIDAV 80 (341)
T ss_pred CEEEEECCCCCHHHHHHHHHHCCCEEEEEECCCCCCHHHHCCCCEECCCCCEEEEECCHHHHHHHHHHHHHHHCCCCCEE
T ss_conf 92686146644358878876359728998157888488750023414853205871751579999998774311675467
Q ss_pred EE-CC----CHHHHH-------------HHHHHHCCCCE--EEEECCCCHHCCCCCCCCCCCHH
Q ss_conf 60-68----758999-------------99975045651--79961451001121112364101
Q gi|254780307|r 69 LM-SA----GHAVSS-------------QMSPKIAANGC--IVIDNSSAWRYDSDVPLIVPEVN 112 (335)
Q Consensus 69 f~-a~----p~~~s~-------------~~~~~~~~~g~--~VIDlS~~~R~~~d~p~~lPein 112 (335)
+= |. |-.+.. .+++...+.|+ .|++-|++ +|+.|+-.
T Consensus 81 iHFAg~~~VgESv~~Pl~YY~NNv~nTl~L~~~m~~~GV~~~iFSSsAa-------VYG~p~~~ 137 (341)
T TIGR01179 81 IHFAGLIAVGESVQKPLKYYRNNVVNTLNLLEAMQETGVKKFIFSSSAA-------VYGEPESI 137 (341)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCE-------EECCCCCC
T ss_conf 5201121252557524544000468999999999981897415304214-------50778855
No 363
>TIGR00507 aroE shikimate 5-dehydrogenase; InterPro: IPR011342 The shikimate pathway links the metabolism of carbohydrates to the biosynthesis of aromatic compounds and is essential for the biosynthesis of aromatic amino acids and other aromatic compounds in bacteria, eukaryotic microorganisms and plants . It is a seven-step pathway which converts phosphoenolpyruvate and erythrose 4-phosphate to chorismate, the common precursor for the synthesis of folic acid, ubiquinone, vitamins E and K, and aromatic amino acids. Since this pathway is absent in metazoans, which must therefore obtain the essential amino acids phenylalanine and tryptophan from their diet, the enzymes in this pathway are important targets for the development of novel herbicides and antimicrobial compounds. This entry represents shikimate 5-dehydrogenases from prokaryotes and functionally equivalent C-terminal domains from larger, multifunctional proteins, the majority of which have an N-terminal quinate dehydrogenase domain. These multifunctional proteins occur in plants, chlamydiae, planctomycetes and a limited number of marine proteobacteria. Shikimate 5-dehydrogenase catalyses the fourth step of the shikimate pathway, which is the NADP-dependent reduction of 3-dehydroshikimate to shikimate . Structural studies suggests that some shikimate dehydrogenases are monmers while others form homodimers , . Each shikimate dehydrogenase monomer forms a compact two-domain alpha/beta sandwich with a deep interdomain cleft. The N-terminal substrate-binding domain forms a three layer alpha-beta-alpha sandwich, while the C-terminal NADP-binding domain forms a nearly typical Rossman fold. The active site is thought to be located within the interdomain cleft, with substrate binding causing a conformational change which closes the active site cleft, forming a productive active site.; GO: 0004764 shikimate 5-dehydrogenase activity, 0050661 NADP binding.
Probab=75.14 E-value=3.2 Score=20.60 Aligned_cols=93 Identities=13% Similarity=0.194 Sum_probs=48.1
Q ss_pred EEEEEECCCCHHHHHHHHHHHHCCCCEEEEEEEECCCCCCEEE----EC----CCCEEEEEECCHHHHCC--CCEEEECC
Q ss_conf 1799981667789999999974499807899997476587560----02----78158998779436318--84786068
Q gi|254780307|r 3 FKVAVVGATGNVGREMLNIICERGFPISEVVALASERSAGTKV----PF----GKETIDVQDVKSYDFSD--TDICLMSA 72 (335)
Q Consensus 3 ~kvaIiGatG~vG~el~~lL~~~~~p~~~l~~~~s~~~~G~~i----~~----~~~~~~~~~~~~~~~~~--~Divf~a~ 72 (335)
-+|.|+||-|..=.-+++|+..-+ -++...=-..+.|+.+ +. ...+...-+.++.+... +|+|+-|+
T Consensus 122 ~~~li~GAGGAa~a~a~~L~~~t~---~~~~i~NRT~~ka~~La~~~~~kln~~~G~~~~~~~~~~~l~~G~~DlIINAT 198 (286)
T TIGR00507 122 QRVLIIGAGGAAKAVALELLKATD---CNVIIANRTVEKAEELAERFQRKLNKKYGEIQAFSLDEVPLHKGKVDLIINAT 198 (286)
T ss_pred CEEEEEECCHHHHHHHHHHHHHCC---CEEEEEECCHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCEEEEEECC
T ss_conf 779999428678999999986009---97899828778999999998988534248536521133555578567998546
Q ss_pred CHHHHHHH-----HHHHCCCCEEEEECCCCH
Q ss_conf 75899999-----975045651799614510
Q gi|254780307|r 73 GHAVSSQM-----SPKIAANGCIVIDNSSAW 98 (335)
Q Consensus 73 p~~~s~~~-----~~~~~~~g~~VIDlS~~~ 98 (335)
|.+.+.+. -+.....+..|.|+--.+
T Consensus 199 s~G~~~~~~~~~v~~~~~~~~~~v~D~~Y~p 229 (286)
T TIGR00507 199 SAGMSGNIDEPPVPAELLKEGKLVYDLVYNP 229 (286)
T ss_pred CCCCCCCCCCCCCCHHHCCCCCEEEECCCCC
T ss_conf 7788889887456853416886899514688
No 364
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=74.79 E-value=4.8 Score=19.56 Aligned_cols=34 Identities=21% Similarity=0.518 Sum_probs=26.7
Q ss_pred EEEEEECCCCHHHHHHHHHHHHCCCCEEEEEEEECCC
Q ss_conf 1799981667789999999974499807899997476
Q gi|254780307|r 3 FKVAVVGATGNVGREMLNIICERGFPISEVVALASER 39 (335)
Q Consensus 3 ~kvaIiGatG~vG~el~~lL~~~~~p~~~l~~~~s~~ 39 (335)
.++-|-|||+=+|.++.+.|.++++ +|.+++-++
T Consensus 7 ~~~lITGASsGIG~~~A~~lA~~g~---~liLvaR~~ 40 (265)
T COG0300 7 KTALITGASSGIGAELAKQLARRGY---NLILVARRE 40 (265)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCC---EEEEEECCH
T ss_conf 6799977886489999999997799---799996769
No 365
>PRK08118 topology modulation protein; Reviewed
Probab=74.62 E-value=4.1 Score=19.94 Aligned_cols=34 Identities=21% Similarity=0.409 Sum_probs=27.4
Q ss_pred CCEEEEEECCCCHHHHHHHHHHH-HCCCCEEEEEEE
Q ss_conf 96179998166778999999997-449980789999
Q gi|254780307|r 1 MTFKVAVVGATGNVGREMLNIIC-ERGFPISEVVAL 35 (335)
Q Consensus 1 M~~kvaIiGatG~vG~el~~lL~-~~~~p~~~l~~~ 35 (335)
|+ ||.|+|.+|-.=.-|-+.|. .-+.|++++-.+
T Consensus 1 M~-rI~IiG~~GsGKSTlAr~L~~~~~ip~~~LD~l 35 (167)
T PRK08118 1 MK-KIILIGSGGSGKSTLARQLGEKLNIPVHHLDAL 35 (167)
T ss_pred CC-EEEEECCCCCCHHHHHHHHHHHHCCCEEECCCE
T ss_conf 96-799988999879999999999889697964434
No 366
>TIGR02817 adh_fam_1 zinc-binding alcohol dehydrogenase family protein; InterPro: IPR014182 Members of this entry form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases. Some current members of this entry carry designations as putative alginate lyase, however none have been characterised as such..
Probab=74.16 E-value=6.1 Score=18.91 Aligned_cols=95 Identities=14% Similarity=0.157 Sum_probs=53.8
Q ss_pred CEEEEEECCCCHHHHHHHHHHHHCCCCEEEEEEEECCCCCCEEEECCCCEEEE-------EECCHHHHCCCCEEEECCCH
Q ss_conf 61799981667789999999974499807899997476587560027815899-------87794363188478606875
Q gi|254780307|r 2 TFKVAVVGATGNVGREMLNIICERGFPISEVVALASERSAGTKVPFGKETIDV-------QDVKSYDFSDTDICLMSAGH 74 (335)
Q Consensus 2 ~~kvaIiGatG~vG~el~~lL~~~~~p~~~l~~~~s~~~~G~~i~~~~~~~~~-------~~~~~~~~~~~Divf~a~p~ 74 (335)
+-+|-|+||.|=||+=++||+-.- -..++..=+|.-..-+=+...+-+..+ .+++...+..++.||+-+=.
T Consensus 151 ~~~lLIiGgAGGVGSI~iQLAR~L--T~ltVIaTASRpEs~~Wv~~LGAH~VIDHskPL~~ql~~L~l~~v~~V~SlT~T 228 (338)
T TIGR02817 151 KRALLIIGGAGGVGSILIQLARQL--TGLTVIATASRPESQEWVLELGAHHVIDHSKPLKAQLEKLGLEAVSYVFSLTHT 228 (338)
T ss_pred CCEEEEECCCCCHHHHHHHHHHHH--CCCEEEEECCCHHHHHHHHHCCCCEEECCCCCHHHHHHHHCCCCCCEEECCCHH
T ss_conf 874789738851789999999985--496499972857899999973991886588436899998288998557516607
Q ss_pred HH-HHHHHHHHCCCCE-EEEECCCCH
Q ss_conf 89-9999975045651-799614510
Q gi|254780307|r 75 AV-SSQMSPKIAANGC-IVIDNSSAW 98 (335)
Q Consensus 75 ~~-s~~~~~~~~~~g~-~VIDlS~~~ 98 (335)
+. ..++++.++--|. -+||=-..+
T Consensus 229 DqH~~~ive~laPQGrlaLIDDP~~L 254 (338)
T TIGR02817 229 DQHFKEIVELLAPQGRLALIDDPAEL 254 (338)
T ss_pred HHHHHHHHHHHCCCCCEECCCCCCCC
T ss_conf 89999999985678740000287001
No 367
>PRK06932 glycerate dehydrogenase; Provisional
Probab=74.10 E-value=5.4 Score=19.22 Aligned_cols=33 Identities=15% Similarity=0.190 Sum_probs=21.5
Q ss_pred HCCCCEEEECCCHHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf 318847860687589999997504565179961451
Q gi|254780307|r 62 FSDTDICLMSAGHAVSSQMSPKIAANGCIVIDNSSA 97 (335)
Q Consensus 62 ~~~~Divf~a~p~~~s~~~~~~~~~~g~~VIDlS~~ 97 (335)
..++|+++. .....++++..++.+ .++|...+.
T Consensus 42 i~dad~ii~-~~~~i~~~vl~~ap~--LK~I~~~g~ 74 (314)
T PRK06932 42 AKDADIVIT-SKVIFSRETLQQLPK--LKLIAITAT 74 (314)
T ss_pred HCCCCEEEE-CCCCCCHHHHHCCCC--CEEEEECCC
T ss_conf 579989997-898639999953999--809988983
No 368
>PRK07261 topology modulation protein; Provisional
Probab=73.94 E-value=4.4 Score=19.74 Aligned_cols=33 Identities=18% Similarity=0.393 Sum_probs=26.7
Q ss_pred EEEEEECCCCHHHHHHHHHHH-HCCCCEEEEEEE
Q ss_conf 179998166778999999997-449980789999
Q gi|254780307|r 3 FKVAVVGATGNVGREMLNIIC-ERGFPISEVVAL 35 (335)
Q Consensus 3 ~kvaIiGatG~vG~el~~lL~-~~~~p~~~l~~~ 35 (335)
|||.|+|.+|-.=..|-+.|. .-+.|++++-.+
T Consensus 1 MrI~IiG~sGsGKSTlAr~L~~~~~ip~~~LD~l 34 (171)
T PRK07261 1 MKIAIIGYSGSGKSTLARFLGQHYNCPVLHLDQL 34 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCCEEEECCE
T ss_conf 9899988999868999999999879797970227
No 369
>PRK07340 ornithine cyclodeaminase; Validated
Probab=73.91 E-value=2.8 Score=20.98 Aligned_cols=15 Identities=33% Similarity=0.687 Sum_probs=8.4
Q ss_pred CCCCCCCCEEEEEEE
Q ss_conf 432211200112110
Q gi|254780307|r 226 NIKVSCTAARVPVFI 240 (335)
Q Consensus 226 ~~~v~~t~~~vPv~r 240 (335)
++-++.|+..-|+|.
T Consensus 190 DiI~taT~S~~Pv~~ 204 (304)
T PRK07340 190 DVVVTVTTSRTPVYP 204 (304)
T ss_pred CEEEEECCCCCCCCC
T ss_conf 989994189976446
No 370
>TIGR01771 L-LDH-NAD L-lactate dehydrogenase; InterPro: IPR011304 This entry represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme functions as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities.; GO: 0004459 L-lactate dehydrogenase activity, 0019642 anaerobic glycolysis, 0005737 cytoplasm.
Probab=73.60 E-value=4.8 Score=19.53 Aligned_cols=68 Identities=25% Similarity=0.497 Sum_probs=47.5
Q ss_pred EECCCCHHHHHHHHHHHHCCCCEEEEEEEE--CCCCCCEEE------ECCCCE-EEEEECCHHHHCCCCEEEECCCHHH
Q ss_conf 981667789999999974499807899997--476587560------027815-8998779436318847860687589
Q gi|254780307|r 7 VVGATGNVGREMLNIICERGFPISEVVALA--SERSAGTKV------PFGKET-IDVQDVKSYDFSDTDICLMSAGHAV 76 (335)
Q Consensus 7 IiGatG~vG~el~~lL~~~~~p~~~l~~~~--s~~~~G~~i------~~~~~~-~~~~~~~~~~~~~~Divf~a~p~~~ 76 (335)
|||+ |.||.-..--|...++ .-|++++. .++..|..+ +|.... ..+..=+-.|++++|+|+-++|...
T Consensus 1 iiG~-G~VGss~A~a~~~~g~-a~E~vliDin~~ka~Gea~DL~ha~~f~~~~~~~v~~gdY~dc~daD~vVITAG~~Q 77 (302)
T TIGR01771 1 IIGA-GNVGSSTAFALLNQGL-ADEIVLIDINKDKAEGEAMDLQHAASFLPTPGVKVRAGDYSDCKDADLVVITAGAPQ 77 (302)
T ss_pred CCCC-CCHHHHHHHHHHHCCC-CCEEEEEECCHHHHHHHHHHHHCCHHHCCCCCEEEECCCHHHHCCCCEEEEECCCCC
T ss_conf 9114-8618999999973150-318878834757789878655222222378611776189799638978999327775
No 371
>cd04510 consensus
Probab=73.52 E-value=6.5 Score=18.72 Aligned_cols=70 Identities=13% Similarity=0.172 Sum_probs=42.4
Q ss_pred EEEEEECCCCHHHHHHHHHHHH-CCC---CEEEEEEEECCCC----CCEEEECC------CCEEEEEECCHHHHCCCCEE
Q ss_conf 1799981667789999999974-499---8078999974765----87560027------81589987794363188478
Q gi|254780307|r 3 FKVAVVGATGNVGREMLNIICE-RGF---PISEVVALASERS----AGTKVPFG------KETIDVQDVKSYDFSDTDIC 68 (335)
Q Consensus 3 ~kvaIiGatG~vG~el~~lL~~-~~~---p~~~l~~~~s~~~----~G~~i~~~------~~~~~~~~~~~~~~~~~Div 68 (335)
+||+|-||+|-+|--|+-++.. .=| -.+.|.++..+.. .|-..+.. -+.+.+.+=.++.|+++|++
T Consensus 2 ~~V~VTGAAGqI~Y~Ll~~Ia~G~vfG~dq~V~L~Lldi~~~~~~L~Gv~MELeDcAfPlL~~v~~t~d~~~AF~dad~a 81 (334)
T cd04510 2 LQVWITSASAPVCYHLIPHLASGDVFGMLTEISIHLLDTSESEEMLKGLVMEVFDLAFPLLREVSVHTDVMLAFQQAHVI 81 (334)
T ss_pred EEEEEECCCHHHHHHHHHHHHCCCCCCCCCEEEEEECCCHHHHHHHHCEEEEHHHCCCHHHCCEEEECCHHHHHCCCCEE
T ss_conf 09999577379999999998478766999759999668666788753305511404654338658857878973668889
Q ss_pred EECC
Q ss_conf 6068
Q gi|254780307|r 69 LMSA 72 (335)
Q Consensus 69 f~a~ 72 (335)
|+-.
T Consensus 82 ilvg 85 (334)
T cd04510 82 IVLD 85 (334)
T ss_pred EEEC
T ss_conf 9970
No 372
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=73.37 E-value=3.8 Score=20.12 Aligned_cols=97 Identities=15% Similarity=0.257 Sum_probs=55.7
Q ss_pred CCEEEEEECCCCHHHHHHHHHHHHCCCCEEEEEE----EECCCCCCEE-EECCCCE---------EEEEE-CCHHHHCCC
Q ss_conf 9617999816677899999999744998078999----9747658756-0027815---------89987-794363188
Q gi|254780307|r 1 MTFKVAVVGATGNVGREMLNIICERGFPISEVVA----LASERSAGTK-VPFGKET---------IDVQD-VKSYDFSDT 65 (335)
Q Consensus 1 M~~kvaIiGatG~vG~el~~lL~~~~~p~~~l~~----~~s~~~~G~~-i~~~~~~---------~~~~~-~~~~~~~~~ 65 (335)
|+++|+|+|= ||+|.-+.-...+++++.+-+-- +.+- ..|+. +..-+.+ -.++- .+..+++.+
T Consensus 8 ~~~~I~ViGL-GYVGLPlA~~fA~~G~~ViG~DIn~~~Vd~l-n~G~~~i~e~~~~~~v~~~v~~g~lraTtd~~~l~~~ 85 (436)
T COG0677 8 MSATIGVIGL-GYVGLPLAAAFASAGFKVIGVDINQKKVDKL-NRGESYIEEPDLDEVVKEAVESGKLRATTDPEELKEC 85 (436)
T ss_pred CCEEEEEECC-CCCCHHHHHHHHHCCCCEEEEECCHHHHHHH-HCCCCEEECCCHHHHHHHHHHCCCCEEECCHHHCCCC
T ss_conf 7528999824-6445788999987699557575788998887-5786425468688999999863971575685562548
Q ss_pred CEEEECCCHHHH-------------HHHHHHHCCCCEEEEECCCCHH
Q ss_conf 478606875899-------------9999750456517996145100
Q gi|254780307|r 66 DICLMSAGHAVS-------------SQMSPKIAANGCIVIDNSSAWR 99 (335)
Q Consensus 66 Divf~a~p~~~s-------------~~~~~~~~~~g~~VIDlS~~~R 99 (335)
|+.+.|.|.-.. .+.....++.|-.||==|..+-
T Consensus 86 dv~iI~VPTPl~~~~~pDls~v~~aa~sIa~~L~kG~LVIlEST~~P 132 (436)
T COG0677 86 DVFIICVPTPLKKYREPDLSYVESAARSIAPVLKKGDLVILESTTPP 132 (436)
T ss_pred CEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCC
T ss_conf 88999935776789998848999999999975677888999647899
No 373
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family; InterPro: IPR010971 This entry represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway . A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions . In Escherichia coli, three enzyme activities have been described: UbiB (which acts first at position 6, see IPR010232 from INTERPRO), UbiH (which acts at position 4, ) and UbiF (which acts at position 5, ). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB) . Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) making it difficult to ascribe a specific activity to each one. Eukaryotes appear to have only a single homologue in this subfamily (COQ6, ) which complements UbiH, but also possess a non-orthologous gene, COQ7 which complements UbiF.; GO: 0016709 oxidoreductase activity acting on paired donors with incorporation or reduction of molecular oxygen NADH or NADPH as one donor and incorporation of one atom of oxygen, 0050660 FAD binding, 0006744 ubiquinone biosynthetic process.
Probab=73.37 E-value=5 Score=19.44 Aligned_cols=34 Identities=21% Similarity=0.404 Sum_probs=24.9
Q ss_pred EEEEECCCCHHHHHHHHHHHHCC--CCEEEEEEEECC
Q ss_conf 79998166778999999997449--980789999747
Q gi|254780307|r 4 KVAVVGATGNVGREMLNIICERG--FPISEVVALASE 38 (335)
Q Consensus 4 kvaIiGatG~vG~el~~lL~~~~--~p~~~l~~~~s~ 38 (335)
.|+|||+ |+||.-|---|.... +-..++.++...
T Consensus 1 Di~IvGg-G~VG~~lA~aL~~~~~~~~~L~~~l~e~~ 36 (445)
T TIGR01988 1 DIVIVGG-GMVGLALALALASSGSRLKGLKVALIEAQ 36 (445)
T ss_pred CEEEECC-CHHHHHHHHHHHCCCCCCCCCEEEEEECC
T ss_conf 9688847-38899999998418631247317996052
No 374
>COG1832 Predicted CoA-binding protein [General function prediction only]
Probab=73.31 E-value=4.5 Score=19.68 Aligned_cols=81 Identities=16% Similarity=0.267 Sum_probs=48.9
Q ss_pred EEEEECCCCHHH---HHHHHHHHHCCCCEEEEEEEECCCCCCEEEECCCCEEEEEECCHHHHCCCCEEEECCCHHHHHHH
Q ss_conf 799981667789---99999997449980789999747658756002781589987794363188478606875899999
Q gi|254780307|r 4 KVAVVGATGNVG---REMLNIICERGFPISEVVALASERSAGTKVPFGKETIDVQDVKSYDFSDTDICLMSAGHAVSSQM 80 (335)
Q Consensus 4 kvaIiGatG~vG---~el~~lL~~~~~p~~~l~~~~s~~~~G~~i~~~~~~~~~~~~~~~~~~~~Divf~a~p~~~s~~~ 80 (335)
+||++|+|.--. -...+-|.++++-.+ .+ .++.+|+. +.++. .+..+.+.. ..+|+|-..-+++...++
T Consensus 18 ~IAvVG~S~~P~r~sy~V~kyL~~~GY~Vi---PV-NP~~~~~e--iLG~k-~y~sL~dIp-e~IDiVdvFR~~e~~~~i 89 (140)
T COG1832 18 TIAVVGASDKPDRPSYRVAKYLQQKGYRVI---PV-NPKLAGEE--ILGEK-VYPSLADIP-EPIDIVDVFRRSEAAPEV 89 (140)
T ss_pred EEEEEECCCCCCCCHHHHHHHHHHCCCEEE---EE-CCCCCHHH--HCCCH-HHHCHHHCC-CCCCEEEEECCHHHHHHH
T ss_conf 699994579998618899999997899899---55-85520577--62831-120587588-777579985286563889
Q ss_pred HHHHCCCCEEEE
Q ss_conf 975045651799
Q gi|254780307|r 81 SPKIAANGCIVI 92 (335)
Q Consensus 81 ~~~~~~~g~~VI 92 (335)
++++.+.|.+||
T Consensus 90 ~~eal~~~~kv~ 101 (140)
T COG1832 90 AREALEKGAKVV 101 (140)
T ss_pred HHHHHHHCCCEE
T ss_conf 999996178859
No 375
>PRK07102 short chain dehydrogenase; Provisional
Probab=73.28 E-value=5 Score=19.43 Aligned_cols=34 Identities=24% Similarity=0.403 Sum_probs=27.1
Q ss_pred CCEEEEEECCCCHHHHHHHHHHHHCCCCEEEEEEEECC
Q ss_conf 96179998166778999999997449980789999747
Q gi|254780307|r 1 MTFKVAVVGATGNVGREMLNIICERGFPISEVVALASE 38 (335)
Q Consensus 1 M~~kvaIiGatG~vG~el~~lL~~~~~p~~~l~~~~s~ 38 (335)
|| +|-|.|||+=+|+++.+.|.++++ ++...+-+
T Consensus 1 MK-~vlITGassGIG~a~A~~la~~G~---~v~l~~R~ 34 (243)
T PRK07102 1 MK-KILIIGATSDIARACARRYAAAGA---RLYLAARD 34 (243)
T ss_pred CC-EEEEECCCHHHHHHHHHHHHHCCC---EEEEEECC
T ss_conf 99-799915745999999999998799---89999898
No 376
>COG1087 GalE UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane]
Probab=73.25 E-value=5.9 Score=18.98 Aligned_cols=222 Identities=23% Similarity=0.260 Sum_probs=98.7
Q ss_pred EEEEEECCCCHHHHHHHHHHHHCCCCEEEEEEEECCCCCCEEEECCC--CEEEEEECCHHH-----H--CCCCEEEECCC
Q ss_conf 17999816677899999999744998078999974765875600278--158998779436-----3--18847860687
Q gi|254780307|r 3 FKVAVVGATGNVGREMLNIICERGFPISEVVALASERSAGTKVPFGK--ETIDVQDVKSYD-----F--SDTDICLMSAG 73 (335)
Q Consensus 3 ~kvaIiGatG~vG~el~~lL~~~~~p~~~l~~~~s~~~~G~~i~~~~--~~~~~~~~~~~~-----~--~~~Divf~a~p 73 (335)
|+|-|.|+.||+|......|.+.++. ++.+. .-+-|....... -.+..-|+.+.. | .++|.|+-.+.
T Consensus 1 ~~iLVtGGAGYIGSHtv~~Ll~~G~~---vvV~D-NL~~g~~~~v~~~~~~f~~gDi~D~~~L~~vf~~~~idaViHFAa 76 (329)
T COG1087 1 MKVLVTGGAGYIGSHTVRQLLKTGHE---VVVLD-NLSNGHKIALLKLQFKFYEGDLLDRALLTAVFEENKIDAVVHFAA 76 (329)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCE---EEEEE-CCCCCCHHHHHHCCCCEEEECCCCHHHHHHHHHHCCCCEEEECCC
T ss_conf 92999658654689999999978984---89995-688788888602048568833431999999998649988998730
Q ss_pred H-----HHH-------------HHHHHHHCCCCE--EEEECCCCHHCCCCCCCCCCCHHHHHHCCCCCCCEECCCCCCCC
Q ss_conf 5-----899-------------999975045651--79961451001121112364101111103334312126764322
Q gi|254780307|r 74 H-----AVS-------------SQMSPKIAANGC--IVIDNSSAWRYDSDVPLIVPEVNPQTISLASRKNIIANPNCSTI 133 (335)
Q Consensus 74 ~-----~~s-------------~~~~~~~~~~g~--~VIDlS~~~R~~~d~p~~lPein~~~i~~~~~~~~VanPgC~at 133 (335)
. .+. ..+.+...+.|+ .|++.|++ .|+.|+..| |....... -.|| |-.
T Consensus 77 ~~~VgESv~~Pl~Yy~NNv~gTl~Ll~am~~~gv~~~vFSStAa-------vYG~p~~~P--i~E~~~~~-p~NP--YG~ 144 (329)
T COG1087 77 SISVGESVQNPLKYYDNNVVGTLNLIEAMLQTGVKKFIFSSTAA-------VYGEPTTSP--ISETSPLA-PINP--YGR 144 (329)
T ss_pred CCCCCHHHHCHHHHHHHCHHHHHHHHHHHHHHCCCEEEEECCCH-------HCCCCCCCC--CCCCCCCC-CCCC--CHH
T ss_conf 04323444187888860308699999999982997699924301-------038998766--47888889-9885--315
Q ss_pred CCCCC---CCHHHHCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 21112---200110178741146521522112321100000000000012455444455101374042255323472000
Q gi|254780307|r 134 QLVVA---LKPLHDLAMIKRVVVTTYQSVSGAGKKGIDELLAQTKAFLAKKTIENRVFTKNIAFNVIPHIDVFMDGGSTK 210 (335)
Q Consensus 134 ~~~l~---L~PL~~~~~i~~v~v~s~~g~SGaG~~~~~eL~~q~~~~~~~~~~~~~~~~~~la~n~iP~i~~~~~~g~~~ 210 (335)
.=++. |+-+.+..+.+-++.. |=-+.||--.| .+.. .+... -|+||.+-+..-+
T Consensus 145 sKlm~E~iL~d~~~a~~~~~v~LR-YFN~aGA~~~G----------~iGe-------~~~~~-thLip~~~q~A~G---- 201 (329)
T COG1087 145 SKLMSEEILRDAAKANPFKVVILR-YFNVAGACPDG----------TLGQ-------RYPGA-TLLIPVAAEAALG---- 201 (329)
T ss_pred HHHHHHHHHHHHHHHCCCCEEEEE-ECCCCCCCCCC----------CCCC-------CCCCC-CHHHHHHHHHHHC----
T ss_conf 799999999999871697289998-51335679887----------6677-------99993-3688999999846----
Q ss_pred HHHHEEEEEEEEECCCCC-CCCCCEEE--EEE---------------ECCEEEEEEEECCCCCHHHHHHHHHHCCC
Q ss_conf 011011210001023432-21120011--211---------------02157987672465878999873100698
Q gi|254780307|r 211 EEWKVLVETQKILDPNIK-VSCTAARV--PVF---------------IGHAESVNIEFEKDISIKDAVAAINKSKG 268 (335)
Q Consensus 211 ee~k~~~E~~kil~~~~~-v~~t~~~v--Pv~---------------rG~~~ti~i~l~~~~~~~~i~~~~~~~~~ 268 (335)
..+--.|+|.+-+ -++||+|= -|. .|......+=.-++.+..|+.+++++-.+
T Consensus 202 -----~r~~l~ifG~DY~T~DGT~iRDYIHV~DLA~aHv~Al~~L~~~g~~~~~NLG~G~G~SV~evi~a~~~vtg 272 (329)
T COG1087 202 -----KRDKLFIFGDDYDTKDGTCIRDYIHVDDLADAHVLALKYLKEGGSNNIFNLGSGNGFSVLEVIEAAKKVTG 272 (329)
T ss_pred -----CCCEEEEECCCCCCCCCCEEEEEEEHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCEEHHHHHHHHHHHHC
T ss_conf -----88655784898999998702234324667999999999998189604897468975249999999999869
No 377
>TIGR00421 ubiX_pad polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylases; InterPro: IPR004507 This family contains flavoproteins, which are aromatic acid decarboxylases. An example is the Saccharomyces cerevisiae gene, PAD1 that encodes phenylacrylic acid decarboxylase. Mutations of this gene are viable and confer resistance to cinnamic acid. ; GO: 0016831 carboxy-lyase activity.
Probab=73.24 E-value=4.6 Score=19.63 Aligned_cols=33 Identities=33% Similarity=0.436 Sum_probs=24.4
Q ss_pred EEEEECCCCHH-HHHHHHHHHHCCCCEEEEEEEECCC
Q ss_conf 79998166778-9999999974499807899997476
Q gi|254780307|r 4 KVAVVGATGNV-GREMLNIICERGFPISEVVALASER 39 (335)
Q Consensus 4 kvaIiGatG~v-G~el~~lL~~~~~p~~~l~~~~s~~ 39 (335)
=|||-||||-+ |.+|++.|-+. -+|+.++.|+.
T Consensus 3 vVa~TGAsGvI~G~RLL~~Lk~~---GvE~~LviS~~ 36 (181)
T TIGR00421 3 VVAITGASGVIYGIRLLEVLKEL---GVEVHLVISKW 36 (181)
T ss_pred EEEECCHHHHHHHHHHHHHHHHC---CCEEEEEECHH
T ss_conf 78622244899999999999867---93687863558
No 378
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=73.22 E-value=6.6 Score=18.68 Aligned_cols=75 Identities=21% Similarity=0.160 Sum_probs=47.0
Q ss_pred CCEEEEEECCCCHHHHHHHHHHHHCCCCEEEEEEEECCCCCCEEEECCCCEEEEEECCH---HHHCCCCEEEECCCHHHH
Q ss_conf 96179998166778999999997449980789999747658756002781589987794---363188478606875899
Q gi|254780307|r 1 MTFKVAVVGATGNVGREMLNIICERGFPISEVVALASERSAGTKVPFGKETIDVQDVKS---YDFSDTDICLMSAGHAVS 77 (335)
Q Consensus 1 M~~kvaIiGatG~vG~el~~lL~~~~~p~~~l~~~~s~~~~G~~i~~~~~~~~~~~~~~---~~~~~~Divf~a~p~~~s 77 (335)
|+ ||.+-+.+-+==.-+.+...++ .+|+...... +++ ....++|.+..-.-..++
T Consensus 1 m~-Ki~~~~~~~~e~~~~~~~~~~~---~~e~~~~~~~------------------~~~~~~~~~~~~d~v~~~~~~~i~ 58 (330)
T PRK12480 1 MT-KIMFFGTRDYEKEMALNWGKKN---NVEVTTSKEL------------------LSSATVDQLKDYDGVTTMQFGKLE 58 (330)
T ss_pred CC-EEEEEECCHHHHHHHHHHHHHC---CEEEEEECCC------------------CCHHHHHHHCCCCEEEEEECCCCC
T ss_conf 96-6999837686699999988774---9069995698------------------998999984799989996079789
Q ss_pred HHHHHHHCCCCEEEEECCCC
Q ss_conf 99997504565179961451
Q gi|254780307|r 78 SQMSPKIAANGCIVIDNSSA 97 (335)
Q Consensus 78 ~~~~~~~~~~g~~VIDlS~~ 97 (335)
+++..++.+.|.++|...+.
T Consensus 59 ~evl~~l~~~~LK~I~~~gv 78 (330)
T PRK12480 59 NDVYPKLESYGIKQIAQRTA 78 (330)
T ss_pred HHHHHHHHHCCCEEEEECCE
T ss_conf 99999655679759998772
No 379
>PRK07208 hypothetical protein; Provisional
Probab=72.96 E-value=6.7 Score=18.64 Aligned_cols=38 Identities=26% Similarity=0.514 Sum_probs=26.9
Q ss_pred CCEEEEEECCCCHHHHHHHHHHHHCCCCEEEEEEEE-CCCCCC
Q ss_conf 961799981667789999999974499807899997-476587
Q gi|254780307|r 1 MTFKVAVVGATGNVGREMLNIICERGFPISEVVALA-SERSAG 42 (335)
Q Consensus 1 M~~kvaIiGatG~vG~el~~lL~~~~~p~~~l~~~~-s~~~~G 42 (335)
++-||+|||| |..|.-.-..|.+++++. ..+- ++.-.|
T Consensus 2 ~~kkv~IiGA-G~~GL~aA~~L~~~g~~v---~vlEk~~~vGG 40 (474)
T PRK07208 2 EKKSVVIIGA-GPAGLTAAYELVKRGYPV---TILEADPEVGG 40 (474)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCCCCE---EEEECCCCCCC
T ss_conf 9875999897-689999999998689975---99978998754
No 380
>PRK06720 hypothetical protein; Provisional
Probab=72.95 E-value=6.7 Score=18.64 Aligned_cols=30 Identities=30% Similarity=0.525 Sum_probs=22.1
Q ss_pred EEEEE-CCCCHHHHHHHHHHHHCCCCEEEEEEEE
Q ss_conf 79998-1667789999999974499807899997
Q gi|254780307|r 4 KVAVV-GATGNVGREMLNIICERGFPISEVVALA 36 (335)
Q Consensus 4 kvaIi-GatG~vG~el~~lL~~~~~p~~~l~~~~ 36 (335)
|+++| |+++-.|+++.+.|.+++. .+...+
T Consensus 17 KvalITGa~~GIG~a~A~~la~~Ga---~Vvi~d 47 (169)
T PRK06720 17 KVAIVTGGGIGIGRNTALLLAKQGA---KVIVTD 47 (169)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCC---EEEEEC
T ss_conf 9999989754899999999998699---899952
No 381
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=72.84 E-value=5.3 Score=19.29 Aligned_cols=29 Identities=28% Similarity=0.607 Sum_probs=23.7
Q ss_pred CCEEEEEECCCCHHHHHHHHHHHHCCCCEE
Q ss_conf 961799981667789999999974499807
Q gi|254780307|r 1 MTFKVAVVGATGNVGREMLNIICERGFPIS 30 (335)
Q Consensus 1 M~~kvaIiGatG~vG~el~~lL~~~~~p~~ 30 (335)
|-+.|.|+|| |.+|.-+--.|.++++...
T Consensus 16 ~d~DV~IVGa-Gp~Gl~lAl~La~~Gi~v~ 44 (413)
T PRK07364 16 LDYDVVIVGG-GIVGLTLAAALKDSGLRIA 44 (413)
T ss_pred CCCCEEEECC-CHHHHHHHHHHHHCCCCEE
T ss_conf 9899899992-7999999999986899889
No 382
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase; InterPro: IPR006322 These sequences represent one of two closely related subfamilies of glutathione reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione reductases of animals, yeast, and a number of animal-resident bacteria. ; GO: 0004362 glutathione-disulfide reductase activity, 0050660 FAD binding, 0050661 NADP binding, 0006749 glutathione metabolic process.
Probab=72.38 E-value=2.8 Score=20.92 Aligned_cols=22 Identities=27% Similarity=0.581 Sum_probs=14.0
Q ss_pred CCEEEEEECCCCHHHHHHHHHHH
Q ss_conf 96179998166778999999997
Q gi|254780307|r 1 MTFKVAVVGATGNVGREMLNIIC 23 (335)
Q Consensus 1 M~~kvaIiGatG~vG~el~~lL~ 23 (335)
|.-||.|||| ||++-||-=.|.
T Consensus 180 lP~~~v~vGA-GYIAvELAGvLh 201 (475)
T TIGR01421 180 LPKRVVIVGA-GYIAVELAGVLH 201 (475)
T ss_pred CCCEEEEEEC-CHHHHHHHHHHH
T ss_conf 7871799907-389888888873
No 383
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=72.24 E-value=5.6 Score=19.11 Aligned_cols=26 Identities=27% Similarity=0.515 Sum_probs=22.3
Q ss_pred EEEEEECCCCHHHHHHHHHHHHCCCCE
Q ss_conf 179998166778999999997449980
Q gi|254780307|r 3 FKVAVVGATGNVGREMLNIICERGFPI 29 (335)
Q Consensus 3 ~kvaIiGatG~vG~el~~lL~~~~~p~ 29 (335)
+.|.|+|+ |.+|.-+--.|.++++..
T Consensus 5 ~DV~IvGa-Gp~Gl~lA~~La~~G~~v 30 (405)
T PRK08850 5 VDVAIIGG-GMVGLALAAALKDSDLRI 30 (405)
T ss_pred CCEEEECC-CHHHHHHHHHHHHCCCCE
T ss_conf 76899991-589999999998589978
No 384
>TIGR03013 EpsB_2 sugar transferase, PEP-CTERM system associated. Members of this protein family belong to the family of bacterial sugar transferases (pfam02397). Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria (notable exceptions appear to include Magnetococcus sp. MC-1 and Myxococcus xanthus DK 1622 ). These genes are generally found near one or more of the PrsK, PrsR or PrsT genes that have been related to the PEP-CTERM system by phylogenetic profiling methods. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species. These proteins are homologs of the EpsB protien found in Methylobacillus sp. strain 12S, which is also associated with a PEP-CTERM system, but of a distinct type. A name which appears attached to a number of genes (by transitive annotation) in this family is "undecapre
Probab=72.16 E-value=7 Score=18.52 Aligned_cols=93 Identities=16% Similarity=0.163 Sum_probs=51.3
Q ss_pred EEEEEECCCCHHHHHHHHHHHHCCCCEEEEEEEECCCCCCEEEECCCCEE--EEEECCHH-HHCCCCEEEECCCHHHHHH
Q ss_conf 17999816677899999999744998078999974765875600278158--99877943-6318847860687589999
Q gi|254780307|r 3 FKVAVVGATGNVGREMLNIICERGFPISEVVALASERSAGTKVPFGKETI--DVQDVKSY-DFSDTDICLMSAGHAVSSQ 79 (335)
Q Consensus 3 ~kvaIiGatG~vG~el~~lL~~~~~p~~~l~~~~s~~~~G~~i~~~~~~~--~~~~~~~~-~~~~~Divf~a~p~~~s~~ 79 (335)
-|+.|+|+ |-.++++.+.+.+++....++.-+.+.. +......+... ...++.+. .-.++|-|++|+|......
T Consensus 125 rrvliiG~-~~~a~~l~~~l~~~~~~g~~v~G~~~~~--~~~~~~~~~~~i~~~~~l~~~~~~~~ideV~ial~~~~~~~ 201 (442)
T TIGR03013 125 RRILVLGT-GPRAREIARLRRSSDRRGHEIVGFVPLP--DEPAYVPSEHVIENGDGLVEYVLRHRIDEIVIALDERRGSL 201 (442)
T ss_pred EEEEEEEC-CHHHHHHHHHHHHCCCCCEEEEEEEECC--CCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCHHCCC
T ss_conf 06999977-1999999999861977981899999679--86334676665787789999999689999999678211050
Q ss_pred HHHH---HCCCCEEEEECCCCH
Q ss_conf 9975---045651799614510
Q gi|254780307|r 80 MSPK---IAANGCIVIDNSSAW 98 (335)
Q Consensus 80 ~~~~---~~~~g~~VIDlS~~~ 98 (335)
.... +...|..|.+...-+
T Consensus 202 ~~~~l~~~~~~~v~v~~~p~~~ 223 (442)
T TIGR03013 202 PVDELLECKLSGIEVVDAPSFF 223 (442)
T ss_pred HHHHHHHHHHCCEEEEECCCHH
T ss_conf 8999998786790999934267
No 385
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=72.07 E-value=7.1 Score=18.51 Aligned_cols=37 Identities=19% Similarity=0.299 Sum_probs=25.6
Q ss_pred HHHHCCCCEEEECCCHHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf 436318847860687589999997504565179961451
Q gi|254780307|r 59 SYDFSDTDICLMSAGHAVSSQMSPKIAANGCIVIDNSSA 97 (335)
Q Consensus 59 ~~~~~~~Divf~a~p~~~s~~~~~~~~~~g~~VIDlS~~ 97 (335)
.....++|.++.......+.+..+++ -+.++|-+.+.
T Consensus 39 ~~~~~~~~~i~~~~~~~i~~~~l~~~--p~LKlIa~~~~ 75 (324)
T COG1052 39 AERLKDADAVITFVNDRIDAEVLEKL--PGLKLIATRSA 75 (324)
T ss_pred HHHHCCCCEEEECCCCCCCHHHHHHC--CCCEEEEEECC
T ss_conf 88864786999726787589999748--89369999243
No 386
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=71.38 E-value=3.1 Score=20.70 Aligned_cols=86 Identities=17% Similarity=0.245 Sum_probs=45.9
Q ss_pred EEEEECCCCHHHHHHHHHHHHCCCCEEEEEEEECCCCCCEEE--ECCCCEEEEE-ECCHHH-H-CCCCEEEECCCHHHHH
Q ss_conf 799981667789999999974499807899997476587560--0278158998-779436-3-1884786068758999
Q gi|254780307|r 4 KVAVVGATGNVGREMLNIICERGFPISEVVALASERSAGTKV--PFGKETIDVQ-DVKSYD-F-SDTDICLMSAGHAVSS 78 (335)
Q Consensus 4 kvaIiGatG~vG~el~~lL~~~~~p~~~l~~~~s~~~~G~~i--~~~~~~~~~~-~~~~~~-~-~~~Divf~a~p~~~s~ 78 (335)
||.|+|. |-.|.-..++|.++++. +....+....-... ......+.+. .-.+.+ + .+.|+|+.+-+=....
T Consensus 11 ~i~viGl-G~sG~s~a~~L~~~G~~---V~~~D~~~~~~~~~~~~l~~~gi~~~~g~~~~~~~~~~~d~vV~SPgI~~~~ 86 (450)
T PRK02472 11 KVLVLGL-AKSGYAAAKLLHKLGAN---VTVNDGKPFSENPAAQELLEEGIKVICGSHPLELLDENFDLMVKNPGIPYDN 86 (450)
T ss_pred EEEEEEE-CHHHHHHHHHHHHCCCE---EEEEECCCCCCCHHHHHHHHCCCEEEECCCHHHHCCCCCCEEEECCCCCCCC
T ss_conf 8999977-89999999999988698---9998488665798999999679989978880786057887999899879999
Q ss_pred HHHHHHCCCCEEEEE
Q ss_conf 999750456517996
Q gi|254780307|r 79 QMSPKIAANGCIVID 93 (335)
Q Consensus 79 ~~~~~~~~~g~~VID 93 (335)
.....+.++|+.|+.
T Consensus 87 p~~~~a~~~~i~v~~ 101 (450)
T PRK02472 87 PMVEEALEKGIPIIT 101 (450)
T ss_pred HHHHHHHHCCCCEEE
T ss_conf 999999986996743
No 387
>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=71.34 E-value=6.5 Score=18.74 Aligned_cols=91 Identities=15% Similarity=0.322 Sum_probs=52.6
Q ss_pred EEEEEECCCCHHHHHHHHHHHHCCCCEEEEEEEECCCCCCEEEECCCCEEEEEECCHH--HHCCCCEEEECCCHH-HHHH
Q ss_conf 1799981667789999999974499807899997476587560027815899877943--631884786068758-9999
Q gi|254780307|r 3 FKVAVVGATGNVGREMLNIICERGFPISEVVALASERSAGTKVPFGKETIDVQDVKSY--DFSDTDICLMSAGHA-VSSQ 79 (335)
Q Consensus 3 ~kvaIiGatG~vG~el~~lL~~~~~p~~~l~~~~s~~~~G~~i~~~~~~~~~~~~~~~--~~~~~Divf~a~p~~-~s~~ 79 (335)
|+++++|- |--|..+.++|.+++| +++.+.-...+=+.+.-.+ ......+++. .+..-.+|.+-+|++ .+.+
T Consensus 1 M~iGmiGL-GrMG~n~v~rl~~~gh---dvV~yD~n~~av~~~~~~g-a~~a~sl~el~~~L~~pr~vWlMvPag~it~~ 75 (300)
T COG1023 1 MQIGMIGL-GRMGANLVRRLLDGGH---DVVGYDVNQTAVEELKDEG-ATGAASLDELVAKLSAPRIVWLMVPAGDITDA 75 (300)
T ss_pred CCCEEECC-CHHHHHHHHHHHHCCC---EEEEECCCHHHHHHHHHCC-CCCCCCHHHHHHHCCCCCEEEEECCCCCCHHH
T ss_conf 90115400-0526999999983897---2899738889999998657-75436799999746987479997337773689
Q ss_pred HHHH---HCCCCEEEEECCCCH
Q ss_conf 9975---045651799614510
Q gi|254780307|r 80 MSPK---IAANGCIVIDNSSAW 98 (335)
Q Consensus 80 ~~~~---~~~~g~~VIDlS~~~ 98 (335)
++.. +.++|-.|||-...+
T Consensus 76 vi~~la~~L~~GDivIDGGNS~ 97 (300)
T COG1023 76 VIDDLAPLLSAGDIVIDGGNSN 97 (300)
T ss_pred HHHHHHHHCCCCCEEEECCCCC
T ss_conf 9999885367888898788632
No 388
>PRK06834 hypothetical protein; Provisional
Probab=71.32 E-value=6.1 Score=18.89 Aligned_cols=29 Identities=24% Similarity=0.433 Sum_probs=25.0
Q ss_pred CC-EEEEEECCCCHHHHHHHHHHHHCCCCEE
Q ss_conf 96-1799981667789999999974499807
Q gi|254780307|r 1 MT-FKVAVVGATGNVGREMLNIICERGFPIS 30 (335)
Q Consensus 1 M~-~kvaIiGatG~vG~el~~lL~~~~~p~~ 30 (335)
|+ ..|.|||+ |.+|.-+--+|..++.+..
T Consensus 1 M~~~dVlIVGa-GPvGL~lA~~La~~Gi~v~ 30 (488)
T PRK06834 1 MTEHAVVIAGG-GPTGLMLAGELALAGVDVA 30 (488)
T ss_pred CCCCCEEEECC-CHHHHHHHHHHHHCCCCEE
T ss_conf 99898999893-8899999999997699999
No 389
>PRK06046 alanine dehydrogenase; Validated
Probab=70.81 E-value=4.1 Score=19.97 Aligned_cols=19 Identities=32% Similarity=0.328 Sum_probs=13.0
Q ss_pred CCCCCCCCCEEEEEEECCE
Q ss_conf 3432211200112110215
Q gi|254780307|r 225 PNIKVSCTAARVPVFIGHA 243 (335)
Q Consensus 225 ~~~~v~~t~~~vPv~rG~~ 243 (335)
.++-++.|+.+-|+|++-+
T Consensus 194 aDiI~taT~s~~P~~~~~~ 212 (326)
T PRK06046 194 CDILVTTTPSRKPVVKADW 212 (326)
T ss_pred CCEEEEEECCCCCEECCCC
T ss_conf 9999998289984514433
No 390
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent; InterPro: IPR011275 This entry contains bacterial and archaeal malate dehydrogenases, which convert malate into oxaloacetate in the citric acid cycle. The critical residues which discriminate malate dehydrogenase from lactate dehydrogenase have been characterised , and have been used to determine members of this group. ; GO: 0030060 L-malate dehydrogenase activity, 0006108 malate metabolic process.
Probab=70.77 E-value=7.6 Score=18.33 Aligned_cols=52 Identities=25% Similarity=0.408 Sum_probs=33.8
Q ss_pred EEEEEECCCCHHHHHHHHHHHHCCCCEE-EEEEEECCCCCCEEEECCCCEEEEEECCHH
Q ss_conf 1799981667789999999974499807-899997476587560027815899877943
Q gi|254780307|r 3 FKVAVVGATGNVGREMLNIICERGFPIS-EVVALASERSAGTKVPFGKETIDVQDVKSY 60 (335)
Q Consensus 3 ~kvaIiGatG~vG~el~~lL~~~~~p~~-~l~~~~s~~~~G~~i~~~~~~~~~~~~~~~ 60 (335)
+||.|||| |+||..=--+|++++ .. +++++.=++-.| .-.+|.+.+-+..|.
T Consensus 2 kKisvIGA-GfvGaTTAf~lA~Ke--Lard~VLlDiPqvEg---~pqGKALDmyEasPv 54 (308)
T TIGR01763 2 KKISVIGA-GFVGATTAFLLAEKE--LARDVVLLDIPQVEG---VPQGKALDMYEASPV 54 (308)
T ss_pred CEEEEECC-CCCHHHHHHHHHHHH--HCCEEEEEEECCCCC---CCCCCHHHHHHCCCC
T ss_conf 55899706-861258999998674--067168985055586---888633221102776
No 391
>TIGR02053 MerA mercuric reductase; InterPro: IPR011796 This entry represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH .; GO: 0016152 mercury (II) reductase activity, 0045340 mercury ion binding, 0050660 FAD binding, 0050661 NADP binding, 0006118 electron transport, 0050787 detoxification of mercury ion.
Probab=70.76 E-value=4.5 Score=19.70 Aligned_cols=30 Identities=37% Similarity=0.640 Sum_probs=23.5
Q ss_pred CCEEEEEECCCCHHHHHHHHHHHHCCCCEEEEEEE
Q ss_conf 96179998166778999999997449980789999
Q gi|254780307|r 1 MTFKVAVVGATGNVGREMLNIICERGFPISEVVAL 35 (335)
Q Consensus 1 M~~kvaIiGatG~vG~el~~lL~~~~~p~~~l~~~ 35 (335)
|+ +++|||+ |++|.|+-|++.+-+ .++..+
T Consensus 181 m~-sL~vIGg-g~~g~E~aQ~faRLG---~~V~~~ 210 (494)
T TIGR02053 181 ME-SLVVIGG-GAIGVELAQAFARLG---SEVTIL 210 (494)
T ss_pred EE-EEEEECC-CHHHHHHHHHHHHCC---CEEEHH
T ss_conf 04-6888865-289999999998577---614036
No 392
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=70.71 E-value=6.6 Score=18.69 Aligned_cols=28 Identities=36% Similarity=0.656 Sum_probs=22.7
Q ss_pred CC---EEEEEECCCCHHHHHHHHHHHHCCCCE
Q ss_conf 96---179998166778999999997449980
Q gi|254780307|r 1 MT---FKVAVVGATGNVGREMLNIICERGFPI 29 (335)
Q Consensus 1 M~---~kvaIiGatG~vG~el~~lL~~~~~p~ 29 (335)
|+ ..|+|+|+ |.||.-+--.|.++++..
T Consensus 1 M~~~~~DV~IvG~-G~vGl~lAl~La~~G~~V 31 (391)
T PRK08020 1 MTNQPTEIAIVGG-GMVGGALALGLAQHGFSV 31 (391)
T ss_pred CCCCCCCEEEECC-CHHHHHHHHHHHHCCCCE
T ss_conf 9999984899993-699999999998669978
No 393
>KOG0409 consensus
Probab=70.47 E-value=7 Score=18.55 Aligned_cols=89 Identities=16% Similarity=0.267 Sum_probs=50.9
Q ss_pred EEEEEECCCCHHHHHHHHHHHHCCCCEEEEEEEECCCCCCEEEECCCCEEEEEECCHHHHCCCCEEEECCCHHHHHHHHH
Q ss_conf 17999816677899999999744998078999974765875600278158998779436318847860687589999997
Q gi|254780307|r 3 FKVAVVGATGNVGREMLNIICERGFPISEVVALASERSAGTKVPFGKETIDVQDVKSYDFSDTDICLMSAGHAVSSQMSP 82 (335)
Q Consensus 3 ~kvaIiGatG~vG~el~~lL~~~~~p~~~l~~~~s~~~~G~~i~~~~~~~~~~~~~~~~~~~~Divf~a~p~~~s~~~~~ 82 (335)
.||+.+|- |.-|..+..=|.+.+|+.. -+. +..-+--+|..+-..+.+-..+--+.+|++|.++|+....+-+-
T Consensus 36 ~~iGFIGL-G~MG~~M~~nLik~G~kVt---V~d--r~~~k~~~f~~~Ga~v~~sPaeVae~sDvvitmv~~~~~v~~v~ 109 (327)
T KOG0409 36 TRIGFIGL-GNMGSAMVSNLIKAGYKVT---VYD--RTKDKCKEFQEAGARVANSPAEVAEDSDVVITMVPNPKDVKDVL 109 (327)
T ss_pred CEEEEEEE-CCCHHHHHHHHHHCCCEEE---EEE--CCHHHHHHHHHHCHHHHCCHHHHHHHCCEEEEECCCHHHHHHHH
T ss_conf 51357743-4111899999997598799---995--86788789997050140797999863688999768807668884
Q ss_pred --------HHCCCCEEEEECCCC
Q ss_conf --------504565179961451
Q gi|254780307|r 83 --------KIAANGCIVIDNSSA 97 (335)
Q Consensus 83 --------~~~~~g~~VIDlS~~ 97 (335)
.+..-++..||.|.-
T Consensus 110 ~g~~Gvl~g~~~g~~~~vDmSTi 132 (327)
T KOG0409 110 LGKSGVLSGIRPGKKATVDMSTI 132 (327)
T ss_pred CCCCCCEEECCCCCCEEEECCCC
T ss_conf 07786235215888347762446
No 394
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=70.45 E-value=6.6 Score=18.70 Aligned_cols=27 Identities=22% Similarity=0.369 Sum_probs=22.6
Q ss_pred EEEEEECCCCHHHHHHHHHHHHCCCCEE
Q ss_conf 1799981667789999999974499807
Q gi|254780307|r 3 FKVAVVGATGNVGREMLNIICERGFPIS 30 (335)
Q Consensus 3 ~kvaIiGatG~vG~el~~lL~~~~~p~~ 30 (335)
+.|.|+|| |.+|.-+--.|.+++++..
T Consensus 6 ~DV~IvGa-Gp~Gl~lAl~La~~G~~v~ 32 (386)
T PRK07494 6 TDIAVSGG-GPAGLAAAIALASAGASVA 32 (386)
T ss_pred CCEEEECC-CHHHHHHHHHHHHCCCCEE
T ss_conf 86899990-6899999999987899889
No 395
>PRK09730 hypothetical protein; Provisional
Probab=70.16 E-value=5.4 Score=19.21 Aligned_cols=25 Identities=24% Similarity=0.659 Sum_probs=22.1
Q ss_pred EEEEEE-CCCCHHHHHHHHHHHHCCC
Q ss_conf 179998-1667789999999974499
Q gi|254780307|r 3 FKVAVV-GATGNVGREMLNIICERGF 27 (335)
Q Consensus 3 ~kvaIi-GatG~vG~el~~lL~~~~~ 27 (335)
|||+|| |+++-+|+++.+.|.+.+.
T Consensus 1 mKValITGas~GIG~aia~~la~~Ga 26 (247)
T PRK09730 1 MAIALVTGGSRGIGRATALLLAQEGY 26 (247)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCC
T ss_conf 97999906226999999999998799
No 396
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=69.64 E-value=4 Score=20.04 Aligned_cols=75 Identities=15% Similarity=0.236 Sum_probs=40.6
Q ss_pred EEEEECCCCHHHHHHHHHHHHCCCCEEEEEE----EECCCCCCEEEECCCCEEEEEECCHHH------HCCCCEEEECCC
Q ss_conf 7999816677899999999744998078999----974765875600278158998779436------318847860687
Q gi|254780307|r 4 KVAVVGATGNVGREMLNIICERGFPISEVVA----LASERSAGTKVPFGKETIDVQDVKSYD------FSDTDICLMSAG 73 (335)
Q Consensus 4 kvaIiGatG~vG~el~~lL~~~~~p~~~l~~----~~s~~~~G~~i~~~~~~~~~~~~~~~~------~~~~Divf~a~p 73 (335)
+|-|+|. |.+||.+-|+|..+++|..-+-. +..-+..|.++ .+-|..+.+ ..+++++..|.+
T Consensus 402 ~VII~G~-GR~Gq~var~L~~~gi~~vviD~d~~~V~~~r~~G~~v-------~yGDat~~~vL~~AGi~~A~~vViai~ 473 (602)
T PRK03659 402 QVIIVGF-GRFGQVIGRLLMANKMRITVLERDISAVNLMRKYGYKV-------YYGDATQLELLRAAGAEKAEAIVITCN 473 (602)
T ss_pred CEEEECC-CHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHCCCEE-------EEECCCCHHHHHHCCCCCCCEEEEEEC
T ss_conf 9899788-75689999999978999899978679999999789908-------975899999998679040588999829
Q ss_pred HHH-HHHHHHHHCC
Q ss_conf 589-9999975045
Q gi|254780307|r 74 HAV-SSQMSPKIAA 86 (335)
Q Consensus 74 ~~~-s~~~~~~~~~ 86 (335)
+.. +.++++...+
T Consensus 474 d~~~~~~iv~~~r~ 487 (602)
T PRK03659 474 EPEDTMKLVELCQQ 487 (602)
T ss_pred CHHHHHHHHHHHHH
T ss_conf 89999999999998
No 397
>KOG0455 consensus
Probab=69.40 E-value=8.1 Score=18.15 Aligned_cols=39 Identities=33% Similarity=0.506 Sum_probs=25.6
Q ss_pred CC-EEEEEECCCCHHHHHHHHHHH--HCCCC----EEEEEEEECCCC
Q ss_conf 96-179998166778999999997--44998----078999974765
Q gi|254780307|r 1 MT-FKVAVVGATGNVGREMLNIIC--ERGFP----ISEVVALASERS 40 (335)
Q Consensus 1 M~-~kvaIiGatG~vG~el~~lL~--~~~~p----~~~l~~~~s~~~ 40 (335)
|+ .+|+++|. |-||++|++-+. +.-|. ++++..+++.++
T Consensus 1 ~k~vnVa~~G~-G~vG~~lL~qi~~~~s~~~~~tv~~nvv~v~~~e~ 46 (364)
T KOG0455 1 MKKVNVALMGC-GGVGRHLLQQIVSCRSLHAKMTVHINVVGVCDSES 46 (364)
T ss_pred CCCCCEEEEEC-CCHHHHHHHHHHHHHHHHCCCCEEEEEEEEECCCC
T ss_conf 96220899945-60679999999877643116716999999941313
No 398
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=69.40 E-value=8.1 Score=18.15 Aligned_cols=76 Identities=22% Similarity=0.350 Sum_probs=41.1
Q ss_pred EEEEEECCCCHHHHHHHHHHHHCCCCEEEEEEEECCCCCCEEEECCCCEEEEEECCHHH-H-CCCCEEEEC-CCHHHHHH
Q ss_conf 17999816677899999999744998078999974765875600278158998779436-3-188478606-87589999
Q gi|254780307|r 3 FKVAVVGATGNVGREMLNIICERGFPISEVVALASERSAGTKVPFGKETIDVQDVKSYD-F-SDTDICLMS-AGHAVSSQ 79 (335)
Q Consensus 3 ~kvaIiGatG~vG~el~~lL~~~~~p~~~l~~~~s~~~~G~~i~~~~~~~~~~~~~~~~-~-~~~Divf~a-~p~~~s~~ 79 (335)
-+|+|-|. |-||..+.+.|.+.+. .+.. ++.+. .+ +....+....+.++..+ | .+||+.+-| +++....+
T Consensus 29 k~VaIqG~-GnVG~~~A~~l~~~Ga---kvvv-~d~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~DIl~PcA~~~~i~~~ 101 (200)
T cd01075 29 KTVAVQGL-GKVGYKLAEHLLEEGA---KLIV-ADINE-EA-VARAAELFGATVVAPEEIYSVDADVFAPCALGGVINDD 101 (200)
T ss_pred CEEEEECC-CHHHHHHHHHHHHCCC---EEEE-EECCH-HH-HHHHHHCCCCEEECCHHHHCCCCCEEEECCCCCCCCHH
T ss_conf 99999898-7999999999996799---7999-82688-99-99998568988937332322777688651411546899
Q ss_pred HHHHHC
Q ss_conf 997504
Q gi|254780307|r 80 MSPKIA 85 (335)
Q Consensus 80 ~~~~~~ 85 (335)
.++++.
T Consensus 102 ~a~~i~ 107 (200)
T cd01075 102 TIPQLK 107 (200)
T ss_pred HHHHCC
T ss_conf 998708
No 399
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=69.37 E-value=8.1 Score=18.15 Aligned_cols=61 Identities=18% Similarity=0.287 Sum_probs=30.2
Q ss_pred EEEEEECCCCHHHHHHHHHHHHCCCCEEEEEEEECCCCCCEEEECCCCEEEEEECCHHHHCCCCEEEECCCH
Q ss_conf 179998166778999999997449980789999747658756002781589987794363188478606875
Q gi|254780307|r 3 FKVAVVGATGNVGREMLNIICERGFPISEVVALASERSAGTKVPFGKETIDVQDVKSYDFSDTDICLMSAGH 74 (335)
Q Consensus 3 ~kvaIiGatG~vG~el~~lL~~~~~p~~~l~~~~s~~~~G~~i~~~~~~~~~~~~~~~~~~~~Divf~a~p~ 74 (335)
.+++|+|. |-+|+.+.+++..-+ .++....-.+.. .+......+++ +-++.+|++-+-.|-
T Consensus 117 ktvGIIG~-G~IG~~va~~l~afG---~~vl~~DP~~~~------~~~~~~~~sle-ell~~sDiIslHvPL 177 (379)
T PRK00257 117 RTYGIVGV-GHVGGRLVRVLRGLG---WKVLVCDPPRQE------AEGDGDFVSLE-RILEECDIISLHTPL 177 (379)
T ss_pred CEEEEECC-CHHHHHHHHHHHHCC---CEEEEECCHHHH------HHCCCCEECHH-HHHHHCCEEEEECCC
T ss_conf 87999771-679999999999779---989997845766------43386033499-998749999992577
No 400
>TIGR00877 purD phosphoribosylamine--glycine ligase; InterPro: IPR000115 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) catalyzes the second step in the de novo biosynthesis of purine: ATP + 5-phosphoribosylamine + glycine = ADP + P_i + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART.; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process.
Probab=69.06 E-value=8.2 Score=18.11 Aligned_cols=105 Identities=15% Similarity=0.289 Sum_probs=64.4
Q ss_pred EEEEEECCCCHHHHHHHHHHHHCCCCEEEEEEEECCCCCCEEEECCCCEEEE--E----ECCHHH-H---CCCCEEEECC
Q ss_conf 1799981667789999999974499807899997476587560027815899--8----779436-3---1884786068
Q gi|254780307|r 3 FKVAVVGATGNVGREMLNIICERGFPISEVVALASERSAGTKVPFGKETIDV--Q----DVKSYD-F---SDTDICLMSA 72 (335)
Q Consensus 3 ~kvaIiGatG~vG~el~~lL~~~~~p~~~l~~~~s~~~~G~~i~~~~~~~~~--~----~~~~~~-~---~~~Divf~a~ 72 (335)
|||.|||. |--.-.|...|... |..+ ..+..+.++|.......+.+.+ . |++..- | .++|++|--=
T Consensus 1 MkVLviG~-GGREHAla~~l~qs--~~v~-~~~~apGN~Gta~~~~~~~~~~~~~~~~~d~~~~~~FA~~~~idL~~iGP 76 (459)
T TIGR00877 1 MKVLVIGN-GGREHALAWKLAQS--PLVK-YVYVAPGNAGTARLAKNKNVAIEITKDVRDIEALVEFAKKKKIDLAVIGP 76 (459)
T ss_pred CEEEEECC-CHHHHHHHHHHHCC--CCCC-EEEEECCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEEECC
T ss_conf 95899748-70589999987327--1133-66782689862201254441145786630089999999846975488087
Q ss_pred CHHHHHHHHHHHCCCCEEEEECC-CCHHCCCCC--------CCCCC-CH
Q ss_conf 75899999975045651799614-510011211--------12364-10
Q gi|254780307|r 73 GHAVSSQMSPKIAANGCIVIDNS-SAWRYDSDV--------PLIVP-EV 111 (335)
Q Consensus 73 p~~~s~~~~~~~~~~g~~VIDlS-~~~R~~~d~--------p~~lP-ei 111 (335)
..-...=++..|.++|.+|+==+ .|-|++.+- -|++| -.
T Consensus 77 E~PL~~G~vd~le~~Gi~~FGP~k~AA~LE~SK~FaK~fm~~~gIPGta 125 (459)
T TIGR00877 77 EAPLVLGLVDALEEAGIPVFGPTKEAAQLEASKAFAKDFMKRYGIPGTA 125 (459)
T ss_pred CCCHHHHHHHHHHHCCCCEECCCHHHHHHHCCHHHHHHHHHHCCCCCCE
T ss_conf 4101201477898679514568878864332878999999964898322
No 401
>PRK05993 short chain dehydrogenase; Provisional
Probab=69.05 E-value=8.2 Score=18.11 Aligned_cols=29 Identities=21% Similarity=0.540 Sum_probs=23.6
Q ss_pred CCEE--EEEECCCCHHHHHHHHHHHHCCCCE
Q ss_conf 9617--9998166778999999997449980
Q gi|254780307|r 1 MTFK--VAVVGATGNVGREMLNIICERGFPI 29 (335)
Q Consensus 1 M~~k--vaIiGatG~vG~el~~lL~~~~~p~ 29 (335)
|+|+ |-|-|+++=+|+++.+.|.++++..
T Consensus 1 M~m~K~vlITGassGIG~alA~~la~~G~~V 31 (277)
T PRK05993 1 MDMKRSILITGCSSGIGAYCAHALQKRGWRV 31 (277)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCEE
T ss_conf 9998689992568699999999999879999
No 402
>PRK07024 short chain dehydrogenase; Provisional
Probab=69.03 E-value=7.3 Score=18.41 Aligned_cols=34 Identities=24% Similarity=0.420 Sum_probs=27.9
Q ss_pred CCEEEEEECCCCHHHHHHHHHHHHCCCCEEEEEEEEC
Q ss_conf 9617999816677899999999744998078999974
Q gi|254780307|r 1 MTFKVAVVGATGNVGREMLNIICERGFPISEVVALAS 37 (335)
Q Consensus 1 M~~kvaIiGatG~vG~el~~lL~~~~~p~~~l~~~~s 37 (335)
|+-||-|.|||.=+|.++.+.|.++++ ++...+-
T Consensus 1 M~~~VlITGassGIG~a~A~~la~~G~---~v~l~~R 34 (256)
T PRK07024 1 MPLKVFITGASSGIGQALAREYARQGA---TLGLVAR 34 (256)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHHCCC---EEEEEEC
T ss_conf 999899984602999999999998899---8999989
No 403
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=69.00 E-value=8.3 Score=18.10 Aligned_cols=38 Identities=26% Similarity=0.547 Sum_probs=27.2
Q ss_pred EEEEECCCCHHHHHHHHHHHHCCCCEEEEEEEEC-CCCCCE
Q ss_conf 7999816677899999999744998078999974-765875
Q gi|254780307|r 4 KVAVVGATGNVGREMLNIICERGFPISEVVALAS-ERSAGT 43 (335)
Q Consensus 4 kvaIiGatG~vG~el~~lL~~~~~p~~~l~~~~s-~~~~G~ 43 (335)
||+|||| |..|.-.--.|.+++ |..++..+-+ ++-.|+
T Consensus 2 ~V~VIGa-GiaGLsaA~~L~~~G-~~~~VtvlEa~~r~GG~ 40 (452)
T PRK11883 2 RVAIIGG-GISGLTAAYRLHKKG-PDADITLLEASDRLGGK 40 (452)
T ss_pred EEEEECC-CHHHHHHHHHHHHCC-CCCCEEEEECCCCCEEE
T ss_conf 5999998-789999999999649-79978999889988103
No 404
>pfam02056 Glyco_hydro_4 Family 4 glycosyl hydrolase.
Probab=68.93 E-value=7.2 Score=18.48 Aligned_cols=69 Identities=14% Similarity=0.234 Sum_probs=40.3
Q ss_pred EEEEECC-CCHHHHHHHHHHHH-CCCCEEEEEEEECCCCCCE-------E-EECCCCEEEEEECC--HHHHCCCCEEEEC
Q ss_conf 7999816-67789999999974-4998078999974765875-------6-00278158998779--4363188478606
Q gi|254780307|r 4 KVAVVGA-TGNVGREMLNIICE-RGFPISEVVALASERSAGT-------K-VPFGKETIDVQDVK--SYDFSDTDICLMS 71 (335)
Q Consensus 4 kvaIiGa-tG~vG~el~~lL~~-~~~p~~~l~~~~s~~~~G~-------~-i~~~~~~~~~~~~~--~~~~~~~Divf~a 71 (335)
||+|+|| |-+....++..+.. ..++..++.+..-+...-+ . +...+.++.+.... .+.+.++|+||.+
T Consensus 1 KI~iIGaGS~~~~~~~~~d~~~~~~l~~~ei~L~DId~~rL~~~~~l~~~~~~~~~~~~~v~~ttd~~eAl~gADfVi~~ 80 (183)
T pfam02056 1 KIVIIGGGSTITPKNLLGDLDHTEELPGRELALYDIDEERLDAIQTACKKLVDEAGPDIKFEKTTDRKEALTDADFVINA 80 (183)
T ss_pred CEEEECCCHHHHHHHHHHHHHCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHCCCCEEEEE
T ss_conf 98999985444399999999608568989999977999999999999999999619983999978999996689999998
Q ss_pred C
Q ss_conf 8
Q gi|254780307|r 72 A 72 (335)
Q Consensus 72 ~ 72 (335)
.
T Consensus 81 i 81 (183)
T pfam02056 81 I 81 (183)
T ss_pred E
T ss_conf 6
No 405
>TIGR03570 NeuD_NnaD sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family. These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff.
Probab=68.93 E-value=8.3 Score=18.09 Aligned_cols=85 Identities=20% Similarity=0.269 Sum_probs=44.0
Q ss_pred EEEEECCCCHHHHHHHHHHHHCCCCEEEEEEEECCCCCCEEEECCCCEEEEE-ECCHHH-H-CCCCEEEECCCHHHHH-H
Q ss_conf 7999816677899999999744998078999974765875600278158998-779436-3-1884786068758999-9
Q gi|254780307|r 4 KVAVVGATGNVGREMLNIICERGFPISEVVALASERSAGTKVPFGKETIDVQ-DVKSYD-F-SDTDICLMSAGHAVSS-Q 79 (335)
Q Consensus 4 kvaIiGatG~vG~el~~lL~~~~~p~~~l~~~~s~~~~G~~i~~~~~~~~~~-~~~~~~-~-~~~Divf~a~p~~~s~-~ 79 (335)
|+.|+|+ |--|+|++.++.+.+ .++..+-+++.....-.+.+ +.+. ..+... + .+-+.+|.|.++...+ +
T Consensus 1 KiiIiGa-Gg~ar~v~~~~~~~~---~~v~gfiDd~~~~~~~~~~~--~~vlg~~~~~~~~~~~~~~~~iaIG~~~~R~k 74 (201)
T TIGR03570 1 KLVIIGA-GGHGRVVADIAESSG---WEIVGFLDDNPALQGTSVDG--LPVLGGDEDLLKLPPDEVDLVVAIGDNKLRRR 74 (201)
T ss_pred CEEEECC-CHHHHHHHHHHHHCC---CEEEEEEECCCCCCCCCCCC--EEEECCHHHHHHCCCCCCEEEEEECCHHHHHH
T ss_conf 9999967-889999999999689---93999998983006751588--24867078887548566689999199899999
Q ss_pred HHHHHCCCCEEEEEC
Q ss_conf 997504565179961
Q gi|254780307|r 80 MSPKIAANGCIVIDN 94 (335)
Q Consensus 80 ~~~~~~~~g~~VIDl 94 (335)
+..++.+.+.+...+
T Consensus 75 i~~~l~~~~~~f~~l 89 (201)
T TIGR03570 75 LVEKLKAKGYRFATL 89 (201)
T ss_pred HHHHHHHCCCEEEEE
T ss_conf 999998689967899
No 406
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=68.75 E-value=8.4 Score=18.07 Aligned_cols=41 Identities=24% Similarity=0.470 Sum_probs=27.4
Q ss_pred EEEEEECCCCHHHHHHHHHHHHCCCCEEEEEEEECCCCCCEEEEC
Q ss_conf 179998166778999999997449980789999747658756002
Q gi|254780307|r 3 FKVAVVGATGNVGREMLNIICERGFPISEVVALASERSAGTKVPF 47 (335)
Q Consensus 3 ~kvaIiGatG~vG~el~~lL~~~~~p~~~l~~~~s~~~~G~~i~~ 47 (335)
-||||||+ |=.|.---.-|...+| ++..+-.....|=.+.+
T Consensus 328 KkVAIIGs-GPAGLsaA~~Lar~G~---~VTVFE~~~~~GGlL~y 368 (654)
T PRK12769 328 KRVAIIGA-GPAGLACADVLTRNGV---AVTVYDRHPEIGGLLTF 368 (654)
T ss_pred CEEEEECC-CHHHHHHHHHHHHCCC---EEEEECCCCCCCCEEEE
T ss_conf 98999897-7899999999997697---57995257778866752
No 407
>COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]
Probab=68.54 E-value=8.4 Score=18.04 Aligned_cols=44 Identities=18% Similarity=0.011 Sum_probs=20.2
Q ss_pred EECCCCCCCCCCCCCCCHHHHCCCCC----CEEEEECCCCCCCCCCCCCCH
Q ss_conf 21267643222111220011017874----114652152211232110000
Q gi|254780307|r 124 IIANPNCSTIQLVVALKPLHDLAMIK----RVVVTTYQSVSGAGKKGIDEL 170 (335)
Q Consensus 124 ~VanPgC~at~~~l~L~PL~~~~~i~----~v~v~s~~g~SGaG~~~~~eL 170 (335)
+..++.++..|...++.-|.+.+.++ +++|- |-|.---++|..|
T Consensus 128 L~~~~~~~~PCTp~gi~~ll~~~~i~l~Gk~~vVV---GrS~iVGkPla~l 175 (283)
T COG0190 128 LAQGEPGFLPCTPAGIMTLLEEYGIDLRGKNVVVV---GRSNIVGKPLALL 175 (283)
T ss_pred HHCCCCCCCCCCHHHHHHHHHHHCCCCCCCEEEEE---CCCCCCCHHHHHH
T ss_conf 21089987789899999999983998789889998---9987676799999
No 408
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=68.44 E-value=8.5 Score=18.03 Aligned_cols=135 Identities=18% Similarity=0.231 Sum_probs=70.9
Q ss_pred EEEEEECCCCHHHHHHHHHHHHCCCCEEEEEE-------------EECCCCCCEEE--------ECCCCEEEEE----EC
Q ss_conf 17999816677899999999744998078999-------------97476587560--------0278158998----77
Q gi|254780307|r 3 FKVAVVGATGNVGREMLNIICERGFPISEVVA-------------LASERSAGTKV--------PFGKETIDVQ----DV 57 (335)
Q Consensus 3 ~kvaIiGatG~vG~el~~lL~~~~~p~~~l~~-------------~~s~~~~G~~i--------~~~~~~~~~~----~~ 57 (335)
-+|.|+|+ |=.|.-.++-|..-+.-.+.|.- +.+.+..|+.- ..-..++.+. .+
T Consensus 29 s~VlvvG~-GGLG~~~~~yLa~aGvG~i~i~D~D~ve~sNL~RQ~l~~~~~iG~~K~~~a~~~l~~~np~i~i~~~~~~l 107 (355)
T PRK05597 29 AKVSVIGA-GGLGSPALLYLAGAGVGHITIIDDDVVDLSNLHRQVIHTTAGVGTPKAESAREAMLALNPDVKVTVSVRRL 107 (355)
T ss_pred CCEEEECC-CHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEHHHC
T ss_conf 96899877-76689999999984997599972999261213377565412179797999999999878997427533215
Q ss_pred CHHH----HCCCCEEEECCCHHHHHHHHHHH-CCCCEEEEECCCCHHCCCCCCCCCCCHHHHHHCCCCCC-CEECCCCCC
Q ss_conf 9436----31884786068758999999750-45651799614510011211123641011111033343-121267643
Q gi|254780307|r 58 KSYD----FSDTDICLMSAGHAVSSQMSPKI-AANGCIVIDNSSAWRYDSDVPLIVPEVNPQTISLASRK-NIIANPNCS 131 (335)
Q Consensus 58 ~~~~----~~~~Divf~a~p~~~s~~~~~~~-~~~g~~VIDlS~~~R~~~d~p~~lPein~~~i~~~~~~-~~VanPgC~ 131 (335)
++.+ +++.|+|+=|+.+-.++-.+..+ ...++..|..| .+|++-.+-.-.|.-.|......... .--..|+|.
T Consensus 108 ~~~na~~li~~~DvVvD~tDn~~tR~lind~c~~~~~PlV~ga-~~~~~Gq~~vf~~~~~pcyrclfP~~p~~~~~~~C~ 186 (355)
T PRK05597 108 DWSNALSELADADVILDGSDNFDTRHVASWAAARLGIPHVWAS-ILGFDAQLSVFHAGHGPIYEDLFPTPPPPGSVPSCS 186 (355)
T ss_pred CHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHHHHCCCEEEEE-CCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCHH
T ss_conf 7778997752887898767888899999999998699879965-244678886346999987155789999721346714
Q ss_pred CCCCCCCC
Q ss_conf 22211122
Q gi|254780307|r 132 TIQLVVAL 139 (335)
Q Consensus 132 at~~~l~L 139 (335)
..+.+=++
T Consensus 187 ~~GVLG~~ 194 (355)
T PRK05597 187 QAGVLGPV 194 (355)
T ss_pred HCCCCCCH
T ss_conf 32876441
No 409
>KOG2337 consensus
Probab=68.30 E-value=3 Score=20.81 Aligned_cols=59 Identities=20% Similarity=0.271 Sum_probs=26.2
Q ss_pred CEEEEECCCCH---HCCC-CC--------CCCCCCHHHHHHCCCCCCCEE--C-CCCCCCCCCCCCCCHHHHCCCCCCEE
Q ss_conf 51799614510---0112-11--------123641011111033343121--2-67643222111220011017874114
Q gi|254780307|r 88 GCIVIDNSSAW---RYDS-DV--------PLIVPEVNPQTISLASRKNII--A-NPNCSTIQLVVALKPLHDLAMIKRVV 152 (335)
Q Consensus 88 g~~VIDlS~~~---R~~~-d~--------p~~lPein~~~i~~~~~~~~V--a-nPgC~at~~~l~L~PL~~~~~i~~v~ 152 (335)
|..+||+|.-+ |+.. .| .-.+|.+|-+.+...+- ++ | .=||+..-. | -.+++++|.
T Consensus 298 ~PR~V~Ls~~mDP~~LaessVdLNLkLMkWRlvPdLnLd~is~~Kc--LLLGAGTLGC~VAR~------L-l~WGvRhIT 368 (669)
T KOG2337 298 GPRMVDLSDSMDPKKLAESSVDLNLKLMKWRLVPDLNLDIISQTKC--LLLGAGTLGCNVARN------L-LGWGVRHIT 368 (669)
T ss_pred CCEEEEHHHCCCHHHHHHHHCCCCHHEEEEEECCCCCHHHHHCCEE--EEECCCCCCHHHHHH------H-HHHCCCEEE
T ss_conf 7637754550486887642222130114443047635555421236--897276432188888------8-751230689
Q ss_pred EEE
Q ss_conf 652
Q gi|254780307|r 153 VTT 155 (335)
Q Consensus 153 v~s 155 (335)
..-
T Consensus 369 FvD 371 (669)
T KOG2337 369 FVD 371 (669)
T ss_pred EEE
T ss_conf 872
No 410
>PRK06179 short chain dehydrogenase; Provisional
Probab=68.22 E-value=8.6 Score=18.00 Aligned_cols=29 Identities=34% Similarity=0.664 Sum_probs=23.2
Q ss_pred CC-EEEEEE-CCCCHHHHHHHHHHHHCCCCE
Q ss_conf 96-179998-166778999999997449980
Q gi|254780307|r 1 MT-FKVAVV-GATGNVGREMLNIICERGFPI 29 (335)
Q Consensus 1 M~-~kvaIi-GatG~vG~el~~lL~~~~~p~ 29 (335)
|+ -|+++| |+++=+|.++-+.|.++++..
T Consensus 1 M~~~KvalITGassGIG~a~A~~la~~G~~V 31 (270)
T PRK06179 1 MSNKKVALVTGASSGIGRATAEALARAGYRV 31 (270)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCEE
T ss_conf 9899589990724699999999999879999
No 411
>pfam01494 FAD_binding_3 FAD binding domain. This domain is involved in FAD binding in a number of enzymes.
Probab=68.09 E-value=8.6 Score=17.99 Aligned_cols=27 Identities=22% Similarity=0.429 Sum_probs=23.2
Q ss_pred EEEEEECCCCHHHHHHHHHHHHCCCCEE
Q ss_conf 1799981667789999999974499807
Q gi|254780307|r 3 FKVAVVGATGNVGREMLNIICERGFPIS 30 (335)
Q Consensus 3 ~kvaIiGatG~vG~el~~lL~~~~~p~~ 30 (335)
..|+|+|| |.+|.-+-..|.+++++..
T Consensus 2 ~DV~IvGa-G~aGl~lA~~L~~~Gi~v~ 28 (349)
T pfam01494 2 TDVLIVGG-GPAGLMLALLLARAGVRVV 28 (349)
T ss_pred CCEEEECC-CHHHHHHHHHHHHCCCCEE
T ss_conf 97899992-8899999999987799899
No 412
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase; InterPro: IPR006258 These sequences represent dihydrolipoamide dehydrogenase, a flavoprotein that acts in a number of ways. It is the E3 component of dehydrogenase complexes for pyruvate, 2-oxoglutarate, 2-oxoisovalerate, and acetoin. It can also serve as the L protein of the glycine cleavage system. This family includes a few members known to have distinct functions (ferric leghemoglobin reductase and NADH:ferredoxin oxidoreductase) but that may be predicted by homology to act as dihydrolipoamide dehydrogenase as well. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulphide. ; GO: 0004148 dihydrolipoyl dehydrogenase activity, 0050660 FAD binding, 0006118 electron transport.
Probab=67.79 E-value=8.7 Score=17.95 Aligned_cols=80 Identities=20% Similarity=0.314 Sum_probs=53.9
Q ss_pred EEEEEECCCCHHHHHHHHHHHHCCCCEEEEEEEECCCCCCEEEECCCCEEEEEECCHHHHCCCCEEEECCCHHHHHHHHH
Q ss_conf 17999816677899999999744998078999974765875600278158998779436318847860687589999997
Q gi|254780307|r 3 FKVAVVGATGNVGREMLNIICERGFPISEVVALASERSAGTKVPFGKETIDVQDVKSYDFSDTDICLMSAGHAVSSQMSP 82 (335)
Q Consensus 3 ~kvaIiGatG~vG~el~~lL~~~~~p~~~l~~~~s~~~~G~~i~~~~~~~~~~~~~~~~~~~~Divf~a~p~~~s~~~~~ 82 (335)
-++.|||+ |++|-||-.++.+=+ .+ .++-+ ..|=++-....++|+.+.+
T Consensus 179 ~slvIiGG-GVIG~EfA~~f~~lG---~~--------------------VTv~E-------~~drILp~~D~evSk~~~~ 227 (481)
T TIGR01350 179 ESLVIIGG-GVIGVEFASIFASLG---VK--------------------VTVIE-------MLDRILPGEDAEVSKVVKK 227 (481)
T ss_pred CEEEEECC-CHHHHHHHHHHHHCC---CE--------------------EEEEE-------CCCCCCCCCCHHHHHHHHH
T ss_conf 56699878-667788999998539---80--------------------89994-------5750035431689999999
Q ss_pred HHCCCC-EEEEECCCCH--HCCCCCCCCC--CCHHH
Q ss_conf 504565-1799614510--0112111236--41011
Q gi|254780307|r 83 KIAANG-CIVIDNSSAW--RYDSDVPLIV--PEVNP 113 (335)
Q Consensus 83 ~~~~~g-~~VIDlS~~~--R~~~d~p~~l--Pein~ 113 (335)
+|.+.| .+++-.+.-- +++.+--.+. -+.+.
T Consensus 228 ~L~~~GNv~i~~~~~V~~~~~~~~~~~v~~~~~~~g 263 (481)
T TIGR01350 228 KLKKKGNVKILTNAKVTGAAVEKNDDQVVVEVELEG 263 (481)
T ss_pred HHHHCCCEEEECCCEEECCEEEECCCEEEEEEEECC
T ss_conf 997449849854854423357752878999999879
No 413
>PRK06217 hypothetical protein; Validated
Probab=67.78 E-value=7.3 Score=18.43 Aligned_cols=33 Identities=18% Similarity=0.341 Sum_probs=24.6
Q ss_pred CCEEEEEECCCCHHHHHHHHHHHHC-CCCEEEEEE
Q ss_conf 9617999816677899999999744-998078999
Q gi|254780307|r 1 MTFKVAVVGATGNVGREMLNIICER-GFPISEVVA 34 (335)
Q Consensus 1 M~~kvaIiGatG~vG~el~~lL~~~-~~p~~~l~~ 34 (335)
|+ ||-|+|++|---..|-+.|.++ ++|++++-.
T Consensus 1 m~-rI~i~G~sGsGkSTla~~La~~l~~~~~~lD~ 34 (185)
T PRK06217 1 MM-RIHITGASGSGTTTLGAALAEALDLPHLDTDD 34 (185)
T ss_pred CC-EEEEECCCCCCHHHHHHHHHHHHCCCEEECCC
T ss_conf 96-79997899887899999999975989686455
No 414
>pfam02963 EcoRI Restriction endonuclease EcoRI.
Probab=67.40 E-value=8.9 Score=17.90 Aligned_cols=11 Identities=18% Similarity=0.063 Sum_probs=4.6
Q ss_pred EEEEECCEEEE
Q ss_conf 12110215798
Q gi|254780307|r 236 VPVFIGHAESV 246 (335)
Q Consensus 236 vPv~rG~~~ti 246 (335)
|+..+|-.+++
T Consensus 165 v~rpdGr~v~l 175 (257)
T pfam02963 165 VTRPDGRVVNL 175 (257)
T ss_pred EECCCCCEEEE
T ss_conf 65699837999
No 415
>TIGR01789 lycopene_cycl lycopene cyclase; InterPro: IPR008461 This family consists of several bacterial Lycopene cyclase (CrtY) proteins. Lycopene cyclase is a key enzyme which converts the acyclic carotenoid lycopene into the cyclic carotenoid beta-carotene .; GO: 0045436 lycopene beta cyclase activity, 0016117 carotenoid biosynthetic process.
Probab=67.16 E-value=9 Score=17.87 Aligned_cols=92 Identities=16% Similarity=0.290 Sum_probs=51.0
Q ss_pred EEEEECCCCHHHHHHHHHHHHCCCCEEEEEEE-ECCCCCCE-EEECCCCEEE------EEECCHHHHCC-CCE-------
Q ss_conf 79998166778999999997449980789999-74765875-6002781589------98779436318-847-------
Q gi|254780307|r 4 KVAVVGATGNVGREMLNIICERGFPISEVVAL-ASERSAGT-KVPFGKETID------VQDVKSYDFSD-TDI------- 67 (335)
Q Consensus 4 kvaIiGatG~vG~el~~lL~~~~~p~~~l~~~-~s~~~~G~-~i~~~~~~~~------~~~~~~~~~~~-~Di------- 67 (335)
.+.|||+ |+.|.=+-=.|++ .-|.+.+..+ ++.+-+|. .-+|-+.|+. +-++-..+|.+ .++
T Consensus 1 D~i~vGg-GLAggLIALrL~~-arPd~Ri~~IEa~~~igGNHtWSffd~Dls~~qhawla~lv~~~WpgGYeVRFp~~rr 78 (392)
T TIGR01789 1 DVIVVGG-GLAGGLIALRLQD-ARPDLRILVIEAAASIGGNHTWSFFDADLSDAQHAWLADLVVYDWPGGYEVRFPKRRR 78 (392)
T ss_pred CEEEECC-CHHHHHHHHHHHH-CCCCEEEEEEECCCCCCCCCCEEEECCCCCHHHHHHHHHHCCCCCCCCCEECCHHHHH
T ss_conf 9788727-3357899998752-5987289998437766887530100366674357776534013288971333555543
Q ss_pred -----EEECCCHHHHHHHHHHHCCCC----EEEEECCCC
Q ss_conf -----860687589999997504565----179961451
Q gi|254780307|r 68 -----CLMSAGHAVSSQMSPKIAANG----CIVIDNSSA 97 (335)
Q Consensus 68 -----vf~a~p~~~s~~~~~~~~~~g----~~VIDlS~~ 97 (335)
-|+-+-.....++..+|-+.. .++|.+.+|
T Consensus 79 kL~taY~S~tStrf~e~l~q~fpe~s~~~~r~a~~~~Ad 117 (392)
T TIGR01789 79 KLKTAYLSMTSTRFREELEQKFPERSVLLDRKAVEVDAD 117 (392)
T ss_pred HHHCCCCCCHHHHHHHHHHHHCCCCEEEECCEEEEEEEC
T ss_conf 321022110017789999987687205640156776607
No 416
>TIGR03023 WcaJ_sugtrans Undecaprenyl-phosphate glucose phosphotransferase. Colanic acid biosynthesis utilizes a glucose-undecaprenyl carrier, knockout of EpsB abolishes incorporation of UDP-glucose into the lipid phase and the C-terminal portion of GumD has been shown to be responsible for the glucosyl-1-transferase activity.
Probab=66.61 E-value=9.2 Score=17.81 Aligned_cols=91 Identities=16% Similarity=0.112 Sum_probs=51.8
Q ss_pred EEEEEECCCCHHHHHHHHHHHHCCCCEEEEEEEECC-CCCCEEEECCCCEEEEEECCH---H-HHCCCCEEEECCCHHHH
Q ss_conf 179998166778999999997449980789999747-658756002781589987794---3-63188478606875899
Q gi|254780307|r 3 FKVAVVGATGNVGREMLNIICERGFPISEVVALASE-RSAGTKVPFGKETIDVQDVKS---Y-DFSDTDICLMSAGHAVS 77 (335)
Q Consensus 3 ~kvaIiGatG~vG~el~~lL~~~~~p~~~l~~~~s~-~~~G~~i~~~~~~~~~~~~~~---~-~~~~~Divf~a~p~~~s 77 (335)
-|+-|+|+ |-.|.++.+.+.+++....++.-+-+. ...+... .+. -.+.++++ . .-.++|-|+.|.|....
T Consensus 129 rrvLIIG~-g~~~~~l~~~l~~~~~~G~~vvG~vdd~~~~~~~~--~~~-pvlg~~~~l~~~i~~~~ideViia~~~~~~ 204 (451)
T TIGR03023 129 RRVLIVGA-GELGRRLAERLARNPELGYRVVGFFDDRPDARTGV--RGV-PVLGKLDDLEELIREGEVDEVYIALPLAAE 204 (451)
T ss_pred CEEEEEEC-CHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCC--CCC-CCCCCHHHHHHHHHHCCCCEEEEECCCCCH
T ss_conf 54999968-68999999999719436848999983885444445--799-736989999999996799889995483556
Q ss_pred ---HHHHHHHCCCCEEEEECCCC
Q ss_conf ---99997504565179961451
Q gi|254780307|r 78 ---SQMSPKIAANGCIVIDNSSA 97 (335)
Q Consensus 78 ---~~~~~~~~~~g~~VIDlS~~ 97 (335)
.++...+...|+.|.....-
T Consensus 205 ~~~~~li~~~~~~~v~v~~~p~~ 227 (451)
T TIGR03023 205 KRILELLDALEDLTVDVRLVPDL 227 (451)
T ss_pred HHHHHHHHHHHHCCCEEEEECCH
T ss_conf 89999999986459879994657
No 417
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=66.45 E-value=9.3 Score=17.79 Aligned_cols=28 Identities=36% Similarity=0.756 Sum_probs=19.6
Q ss_pred EEEEECCCCHHHHHHHHHHHHCCCCEEEEEEE
Q ss_conf 79998166778999999997449980789999
Q gi|254780307|r 4 KVAVVGATGNVGREMLNIICERGFPISEVVAL 35 (335)
Q Consensus 4 kvaIiGatG~vG~el~~lL~~~~~p~~~l~~~ 35 (335)
|+.|+|+ |++|.|+.+.|.+.+ .++..+
T Consensus 139 ~vvViGg-G~IGlE~A~~l~~~G---~~Vtvv 166 (427)
T TIGR03385 139 RVVIIGG-GYIGLEMVEALRERG---KNVTLI 166 (427)
T ss_pred EEEEECC-CHHHHHHHHHHHHCC---CEEEEE
T ss_conf 8999996-399999999999769---989999
No 418
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=66.24 E-value=9.4 Score=17.76 Aligned_cols=22 Identities=32% Similarity=0.511 Sum_probs=9.3
Q ss_pred EEEEEEEECCC---CCCEEEECCCC
Q ss_conf 07899997476---58756002781
Q gi|254780307|r 29 ISEVVALASER---SAGTKVPFGKE 50 (335)
Q Consensus 29 ~~~l~~~~s~~---~~G~~i~~~~~ 50 (335)
..++..+++.- ..|+.+..+++
T Consensus 7 ~G~V~~vG~~V~~~~~g~~~~vGdr 31 (280)
T TIGR03366 7 VGEVVALRGGFTPADDGVPLRLGQR 31 (280)
T ss_pred EEEEEEECCCCCCCCCCCCCCCCCE
T ss_conf 7999998999865756985568999
No 419
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=66.21 E-value=9.4 Score=17.76 Aligned_cols=38 Identities=21% Similarity=0.341 Sum_probs=30.2
Q ss_pred CC-EEEEEECCCCHHHHHHHHHHHHCCCCEEEEEEEECCCC
Q ss_conf 96-17999816677899999999744998078999974765
Q gi|254780307|r 1 MT-FKVAVVGATGNVGREMLNIICERGFPISEVVALASERS 40 (335)
Q Consensus 1 M~-~kvaIiGatG~vG~el~~lL~~~~~p~~~l~~~~s~~~ 40 (335)
|+ .+|.|||+ |..|....+-|-+++ +..++..++.+..
T Consensus 1 M~~~~iVIIG~-G~AG~~aA~~lR~~g-~~g~Itli~~E~~ 39 (400)
T PRK09754 1 MKEKTIIIVGG-GQAAAMAAASLRQQG-FTGELHLFSDERH 39 (400)
T ss_pred CCCCEEEEECC-HHHHHHHHHHHHHCC-CCCCEEEEECCCC
T ss_conf 99672999977-599999999998069-4997999989999
No 420
>PRK13789 phosphoribosylamine--glycine ligase; Provisional
Probab=65.61 E-value=9.7 Score=17.69 Aligned_cols=98 Identities=12% Similarity=0.159 Sum_probs=56.1
Q ss_pred CCEEEEEECCCCHHHHHHHHHHHHCCCCEEEEEEEECCCCCCEEEEC--CCCEEEEEECCHH-HH---CCCCEEEECCCH
Q ss_conf 96179998166778999999997449980789999747658756002--7815899877943-63---188478606875
Q gi|254780307|r 1 MTFKVAVVGATGNVGREMLNIICERGFPISEVVALASERSAGTKVPF--GKETIDVQDVKSY-DF---SDTDICLMSAGH 74 (335)
Q Consensus 1 M~~kvaIiGatG~vG~el~~lL~~~~~p~~~l~~~~s~~~~G~~i~~--~~~~~~~~~~~~~-~~---~~~Divf~a~p~ 74 (335)
|+|||-|||. |----.|..-|.+. |.++-.++ .+.++|..-.. ...++.+.|.+.. +| .++|+++---..
T Consensus 3 ~~MkVLviGs-GGREHAia~kl~~S--~~v~~v~~-aPGN~G~~~~~~~~~~~i~~~d~~~i~~fa~~~~idLvvvGPE~ 78 (426)
T PRK13789 3 VKLKVLLIGS-GGRESAIAFALRKS--NLLSELKV-FPGNGGFPDDELLPADSFSILDKSSVQSFLKSNPFDLIVVGPED 78 (426)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHC--CCCCEEEE-ECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEECCCH
T ss_conf 7988999898-88999999999619--89887999-88976112345454443386699999999998499999989668
Q ss_pred HHHHHHHHHHCCCCEEEEECCCC-HHCCC
Q ss_conf 89999997504565179961451-00112
Q gi|254780307|r 75 AVSSQMSPKIAANGCIVIDNSSA-WRYDS 102 (335)
Q Consensus 75 ~~s~~~~~~~~~~g~~VIDlS~~-~R~~~ 102 (335)
-...-++..|.++|..|+--+.. -|++.
T Consensus 79 PL~~Gi~D~l~~~gi~vfGP~k~aA~LE~ 107 (426)
T PRK13789 79 PLVAGFADWAAELGIPCFGPDSYCAQVEG 107 (426)
T ss_pred HHHHHHHHHHHHCCCEEECCCHHHHHHHC
T ss_conf 88631799984169916895989950512
No 421
>PRK07233 hypothetical protein; Provisional
Probab=65.56 E-value=9.7 Score=17.68 Aligned_cols=37 Identities=24% Similarity=0.469 Sum_probs=27.2
Q ss_pred EEEEECCCCHHHHHHHHHHHHCCCCEEEEEEE-ECCCCCCEE
Q ss_conf 79998166778999999997449980789999-747658756
Q gi|254780307|r 4 KVAVVGATGNVGREMLNIICERGFPISEVVAL-ASERSAGTK 44 (335)
Q Consensus 4 kvaIiGatG~vG~el~~lL~~~~~p~~~l~~~-~s~~~~G~~ 44 (335)
||+|||| |..|.---..|.+++|. +..+ ++++-.|+.
T Consensus 1 rVvVIGa-G~aGLsaA~~L~~~G~~---V~VlEa~~~~GGr~ 38 (430)
T PRK07233 1 KIAIIGG-GIMGLAAAYRLAKAGHE---VTVFEADDQLGGLA 38 (430)
T ss_pred CEEEECC-CHHHHHHHHHHHHCCCC---EEEEECCCCCCCCE
T ss_conf 9899997-78999999999839998---89995899895997
No 422
>PRK12320 hypothetical protein; Provisional
Probab=65.50 E-value=9.7 Score=17.68 Aligned_cols=89 Identities=19% Similarity=0.238 Sum_probs=49.6
Q ss_pred EEEEEECCCCHHHHHHHHHHHHCCCCEEEEEEEECCCCCCEEEECCCCEEEEEECCHH----HHCCCCEEEECCCHHHH-
Q ss_conf 1799981667789999999974499807899997476587560027815899877943----63188478606875899-
Q gi|254780307|r 3 FKVAVVGATGNVGREMLNIICERGFPISEVVALASERSAGTKVPFGKETIDVQDVKSY----DFSDTDICLMSAGHAVS- 77 (335)
Q Consensus 3 ~kvaIiGatG~vG~el~~lL~~~~~p~~~l~~~~s~~~~G~~i~~~~~~~~~~~~~~~----~~~~~Divf~a~p~~~s- 77 (335)
|+|+|-||+|.+|+-+-..|...+|-+.-| +..+..- .+ ..-+...-++.+- .-.+.|+|.-|.|.+.+
T Consensus 1 M~i~VT~A~G~lGR~la~rLla~GH~V~Gi---ar~r~~s--~~-~~~dFV~A~iRd~v~~el~~~AD~V~HlA~~~~~~ 74 (699)
T PRK12320 1 MQILVTDATGAVGRSVTRQLIAAGHTVSGI---AQHPHDA--LD-PRVDYVCASLRNPVLQELAGEADAVIHLAPVDTSA 74 (699)
T ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEE---ECCCCCC--CC-CCCCEEECHHHHHHHHHHCCCCCEEEEECCCCCCC
T ss_conf 947883462156778999998668724544---0479866--67-54555421123099997404555488822556899
Q ss_pred ---------HHHHHHHCCCCEEEEECCCC
Q ss_conf ---------99997504565179961451
Q gi|254780307|r 78 ---------SQMSPKIAANGCIVIDNSSA 97 (335)
Q Consensus 78 ---------~~~~~~~~~~g~~VIDlS~~ 97 (335)
..+.+...++|..+|=-|++
T Consensus 75 p~~~~idG~a~V~~A~a~~G~R~vfvs~A 103 (699)
T PRK12320 75 PGGVGITGLAHVANAAARAGARLLFVSQA 103 (699)
T ss_pred CCCCCCHHHHHHHHHHHHHCCCEEEEECC
T ss_conf 98546366889999998618817986057
No 423
>PRK12824 acetoacetyl-CoA reductase; Provisional
Probab=65.13 E-value=9.6 Score=17.70 Aligned_cols=26 Identities=31% Similarity=0.615 Sum_probs=21.6
Q ss_pred CCEEEEEE-CCCCHHHHHHHHHHHHCCC
Q ss_conf 96179998-1667789999999974499
Q gi|254780307|r 1 MTFKVAVV-GATGNVGREMLNIICERGF 27 (335)
Q Consensus 1 M~~kvaIi-GatG~vG~el~~lL~~~~~ 27 (335)
|. |+++| |+++=+|.++.+.|.++++
T Consensus 1 M~-KvalITGas~GIG~a~a~~la~~G~ 27 (245)
T PRK12824 1 MK-KIALVTGAKRGIGSAIARELLADGY 27 (245)
T ss_pred CC-CEEEEECCCCHHHHHHHHHHHHCCC
T ss_conf 98-5999947888899999999998799
No 424
>PRK08643 acetoin reductase; Validated
Probab=65.06 E-value=9.9 Score=17.62 Aligned_cols=32 Identities=38% Similarity=0.611 Sum_probs=24.7
Q ss_pred CCEEEEEE-CCCCHHHHHHHHHHHHCCCCEEEEEEEE
Q ss_conf 96179998-1667789999999974499807899997
Q gi|254780307|r 1 MTFKVAVV-GATGNVGREMLNIICERGFPISEVVALA 36 (335)
Q Consensus 1 M~~kvaIi-GatG~vG~el~~lL~~~~~p~~~l~~~~ 36 (335)
|. ||++| |+++-.|+++.+.|.+.++ .+...+
T Consensus 1 mn-KvalVTGg~~GIG~aia~~la~~Ga---~V~i~d 33 (256)
T PRK08643 1 MS-KVALVTGAGQGIGFAIAKRLVEDGF---KVAIVD 33 (256)
T ss_pred CC-CEEEEECCCCHHHHHHHHHHHHCCC---EEEEEE
T ss_conf 98-4999957578899999999998799---999996
No 425
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=65.02 E-value=9.9 Score=17.62 Aligned_cols=98 Identities=16% Similarity=0.180 Sum_probs=53.8
Q ss_pred EEEEEECCCCHHHHHHHHHHHHCCCCEEEEEEEEC---------------CCCCCEEE--------ECCCCEEEEEE---
Q ss_conf 17999816677899999999744998078999974---------------76587560--------02781589987---
Q gi|254780307|r 3 FKVAVVGATGNVGREMLNIICERGFPISEVVALAS---------------ERSAGTKV--------PFGKETIDVQD--- 56 (335)
Q Consensus 3 ~kvaIiGatG~vG~el~~lL~~~~~p~~~l~~~~s---------------~~~~G~~i--------~~~~~~~~~~~--- 56 (335)
-+|.|+|. |=+|.-..+.|...+. .+|..+.. .+..|+.- ..-..+..+..
T Consensus 12 s~V~v~G~-GGvGs~~a~~LarsGV--G~l~lvD~D~v~~SNLnRQ~~a~~~~iG~~K~~~~~~rl~~iNP~~~v~~~~~ 88 (231)
T cd00755 12 AHVAVVGL-GGVGSWAAEALARSGV--GKLTLIDFDVVCVSNLNRQIHALLSTVGKPKVEVMAERIRDINPECEVDAVEE 88 (231)
T ss_pred CCEEEECC-CHHHHHHHHHHHHCCC--CEEEEEECCEECCCCHHHHHCCCHHHCCCCCHHHHHHHHHHHCCCCEEEEEHH
T ss_conf 97899888-6368999999998099--75999719990454444330165633699728999999998799988998625
Q ss_pred -CCHHH----H-CCCCEEEECCCHHHHHHH-HHHHCCCCEEEEEC-CCCHHCCCC
Q ss_conf -79436----3-188478606875899999-97504565179961-451001121
Q gi|254780307|r 57 -VKSYD----F-SDTDICLMSAGHAVSSQM-SPKIAANGCIVIDN-SSAWRYDSD 103 (335)
Q Consensus 57 -~~~~~----~-~~~Divf~a~p~~~s~~~-~~~~~~~g~~VIDl-S~~~R~~~d 103 (335)
+++++ + .+.|+|+=|..+-.++-. .....+.+..+|.. .+.-|++|.
T Consensus 89 ~~~~~n~~~ll~~~~D~VvDaiD~~~~K~~l~~~c~~~~iplIss~Gag~k~DPt 143 (231)
T cd00755 89 FLTPDNSEDLLGGDPDFVVDAIDSIRAKVALIAYCRKRKIPVISSMGAGGKLDPT 143 (231)
T ss_pred HCCHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCC
T ss_conf 1599899998454777785344248779999999998299089986734675775
No 426
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=64.15 E-value=10 Score=17.52 Aligned_cols=155 Identities=13% Similarity=0.169 Sum_probs=73.4
Q ss_pred EEEEEECCCCHHHHHHHHHHHHCCCCEEEEEEEECCCCCCEE-EE-CCCCEEEE---EECCHH--HHCCCCEEEECCCHH
Q ss_conf 179998166778999999997449980789999747658756-00-27815899---877943--631884786068758
Q gi|254780307|r 3 FKVAVVGATGNVGREMLNIICERGFPISEVVALASERSAGTK-VP-FGKETIDV---QDVKSY--DFSDTDICLMSAGHA 75 (335)
Q Consensus 3 ~kvaIiGatG~vG~el~~lL~~~~~p~~~l~~~~s~~~~G~~-i~-~~~~~~~~---~~~~~~--~~~~~Divf~a~p~~ 75 (335)
-.|+|+|- |.-|+.|.+-|.+|+| ++..+.-..+.-+. +. .......+ .+++++ .++.-..+++..|++
T Consensus 6 ~~IGiIGL-GvMG~nmA~Nl~~~G~---~V~vynrt~~k~~~~~~~~~~~~~~i~~~~sl~e~v~sl~~pr~Iilmv~aG 81 (474)
T PTZ00142 6 SDIGLIGL-AVMGQNLSLNMYSRGF---KVSVYNRTTEKVEEFMKKAKEGNKFVKGYHSLEELVNSLKRPRRVMLLIKAG 81 (474)
T ss_pred CCEEEEEE-HHHHHHHHHHHHHCCC---EEEEECCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHCCCCCEEEEEECCC
T ss_conf 74668736-3867999999997898---7999779879999999853224677646678999997379999899982698
Q ss_pred HH-HHHHH---HHCCCCEEEEECCCCHHCCC----------CCCCCCCCHHHHHHCCCCCCCEECCCCCCCCCCCCCCCH
Q ss_conf 99-99997---50456517996145100112----------111236410111110333431212676432221112200
Q gi|254780307|r 76 VS-SQMSP---KIAANGCIVIDNSSAWRYDS----------DVPLIVPEVNPQTISLASRKNIIANPNCSTIQLVVALKP 141 (335)
Q Consensus 76 ~s-~~~~~---~~~~~g~~VIDlS~~~R~~~----------d~p~~lPein~~~i~~~~~~~~VanPgC~at~~~l~L~P 141 (335)
.. .++.. .+++.|-.|||.+..+-.+. ++-|+=.+|..-.. -+++ +-=--||+...+.. -++|
T Consensus 82 ~~Vd~vi~~L~~~L~~GDIIID~GNs~~~dt~rr~~~l~~kgI~fld~GVSGGe~-GAr~-GpsiMvGG~~~a~~-~v~P 158 (474)
T PTZ00142 82 EAVDEFIDNILPHLEKGDIIIDGGNEWYNNSERRIKLCKEKGILYIGMGVSGGEE-GARY-GPSLMPGGNPYAYD-HVKD 158 (474)
T ss_pred HHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCEECCCCCCCHH-HHHC-CCEECCCCCHHHHH-HHHH
T ss_conf 2599999999850889998987998886579999999985799186478884357-7733-98213588688999-8768
Q ss_pred HHHCCC--CCCEEEEECCCCCCCCC
Q ss_conf 110178--74114652152211232
Q gi|254780307|r 142 LHDLAM--IKRVVVTTYQSVSGAGK 164 (335)
Q Consensus 142 L~~~~~--i~~v~v~s~~g~SGaG~ 164 (335)
+++... ...--+.++-|-.|+|.
T Consensus 159 ileaiaak~~~~~c~~~~G~~GaGH 183 (474)
T PTZ00142 159 IFQACSAKVGDSPCCDYVGPGSSGH 183 (474)
T ss_pred HHHHHHCCCCCCCCEEEECCCCCCH
T ss_conf 9999716169998710368987103
No 427
>TIGR01035 hemA glutamyl-tRNA reductase; InterPro: IPR000343 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway . The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including vitamin B12, haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin . The first stage in tetrapyrrole synthesis is the synthesis of 5-aminoaevulinic acid ALA via two possible routes: (1) condensation of succinyl CoA and glycine (C4 pathway) using ALA synthase (2.3.1.37 from EC), or (2) decarboxylation of glutamate (C5 pathway) via three different enzymes, glutamyl-tRNA synthetase (6.1.1.17 from EC) to charge a tRNA with glutamate, glutamyl-tRNA reductase (1.2.1.70 from EC) to reduce glutamyl-tRNA to glutamate-1-semialdehyde (GSA), and GSA aminotransferase (5.4.3.8 from EC) to catalyse a transamination reaction to produce ALA. The second stage is to convert ALA to uroporphyrinogen III, the first macrocyclic tetrapyrrolic structure in the pathway. This is achieved by the action of three enzymes in one common pathway: porphobilinogen (PBG) synthase (or ALA dehydratase, 4.2.1.24 from EC) to condense two ALA molecules to generate porphobilinogen; hydroxymethylbilane synthase (or PBG deaminase, 2.5.1.61 from EC) to polymerise four PBG molecules into preuroporphyrinogen (tetrapyrrole structure); and uroporphyrinogen III synthase (4.2.1.75 from EC) to link two pyrrole units together (rings A and D) to yield uroporphyrinogen III. Uroporphyrinogen III is the first branch point of the pathway. To synthesise cobalamin (vitamin B12), sirohaem, and coenzyme F430, uroporphyrinogen III needs to be converted into precorrin-2 by the action of uroporphyrinogen III methyltransferase (2.1.1.107 from EC). To synthesise haem and chlorophyll, uroporphyrinogen III needs to be decarboxylated into coproporphyrinogen III by the action of uroporphyrinogen III decarboxylase (4.1.1.37 from EC) . This entry represents glutamyl-tRNA reductase (1.2.1.70 from EC), which reduces glutamyl-tRNA to glutamate-1-semialdehyde during the first stage of tetrapyrrole biosynthesis by the C5 pathway , . This enzyme required NADPH as a coenzyme.; GO: 0008883 glutamyl-tRNA reductase activity, 0050661 NADP binding, 0033014 tetrapyrrole biosynthetic process.
Probab=63.92 E-value=10 Score=17.49 Aligned_cols=90 Identities=20% Similarity=0.376 Sum_probs=44.1
Q ss_pred EEEEEECCCCHHHHHHHHHHHHCCCCEEEEEEEECCCCCCEE--E--ECCC-CEEEEEEC--CH--HHHCCCCEEEECCC
Q ss_conf 179998166778999999997449980789999747658756--0--0278-15899877--94--36318847860687
Q gi|254780307|r 3 FKVAVVGATGNVGREMLNIICERGFPISEVVALASERSAGTK--V--PFGK-ETIDVQDV--KS--YDFSDTDICLMSAG 73 (335)
Q Consensus 3 ~kvaIiGatG~vG~el~~lL~~~~~p~~~l~~~~s~~~~G~~--i--~~~~-~~~~~~~~--~~--~~~~~~Divf~a~p 73 (335)
-|+-|||| |=.|.=.++-|.+++ ..++.-+ .|+.-|. + .+.+ ..+.++++ ++ .-+..+||||+||+
T Consensus 186 ~~~LliGA-GeMg~Lva~~L~~~~--v~~~~i~--NRt~~rA~~LA~e~~~P~~~~f~~La~~~L~~~L~~~DivissTg 260 (436)
T TIGR01035 186 KKVLLIGA-GEMGELVAKHLREKG--VGKVLIA--NRTYERAEKLAKELGGPEAVKFEALALEKLEEALAEADIVISSTG 260 (436)
T ss_pred CEEEEEEC-CHHHHHHHHHHHHCC--CCEEEEE--CCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCEEEEECC
T ss_conf 41899827-457999999996489--5289885--567789999998707866454445548999999742889998557
Q ss_pred HHHHH---HHHHHH---C-----CCCEEEEECCCC
Q ss_conf 58999---999750---4-----565179961451
Q gi|254780307|r 74 HAVSS---QMSPKI---A-----ANGCIVIDNSSA 97 (335)
Q Consensus 74 ~~~s~---~~~~~~---~-----~~g~~VIDlS~~ 97 (335)
+-.-. +-.+.+ . ..-..+||++=.
T Consensus 261 A~~pi~~~~~~e~a~~~Rr~de~~~pl~~~DIAvP 295 (436)
T TIGR01035 261 APEPIVSKEDVERALKERRRDEAARPLFIVDIAVP 295 (436)
T ss_pred CCCCCCCCHHHHHHHHHHCCCCCCCCEEEEECCCC
T ss_conf 65310020348999997222001588699975889
No 428
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=63.87 E-value=10 Score=17.49 Aligned_cols=13 Identities=8% Similarity=0.360 Sum_probs=5.2
Q ss_pred CCCHHHHHHHHHH
Q ss_conf 5878999873100
Q gi|254780307|r 253 DISIKDAVAAINK 265 (335)
Q Consensus 253 ~~~~~~i~~~~~~ 265 (335)
+.+.++..++++.
T Consensus 239 ~~~~~~~l~~l~~ 251 (339)
T COG1064 239 PATLEPSLKALRR 251 (339)
T ss_pred HHHHHHHHHHHHC
T ss_conf 4559999998642
No 429
>PRK11749 putative oxidoreductase; Provisional
Probab=63.83 E-value=10 Score=17.48 Aligned_cols=41 Identities=29% Similarity=0.543 Sum_probs=26.9
Q ss_pred EEEEEECCCCHHHHHHHHHHHHCCCCEEEEEEEECCCCCCEEEEC
Q ss_conf 179998166778999999997449980789999747658756002
Q gi|254780307|r 3 FKVAVVGATGNVGREMLNIICERGFPISEVVALASERSAGTKVPF 47 (335)
Q Consensus 3 ~kvaIiGatG~vG~el~~lL~~~~~p~~~l~~~~s~~~~G~~i~~ 47 (335)
.||||||+ |=.|..--..|.+.+| ++..+-.....|=.+.+
T Consensus 141 kkVAIIGa-GPAGLsAA~~Lar~G~---~VtVfE~~~~~GGll~~ 181 (460)
T PRK11749 141 KKVAVIGA-GPAGLTAAHRLARKGY---DVTIFEARDKAGGLLRY 181 (460)
T ss_pred CEEEEECC-CHHHHHHHHHHHHCCC---EEEEEECCCCCCCEEEE
T ss_conf 98999896-7899999999997698---47997047878755754
No 430
>PRK10294 6-phosphofructokinase 2; Provisional
Probab=63.65 E-value=11 Score=17.46 Aligned_cols=141 Identities=16% Similarity=0.229 Sum_probs=66.3
Q ss_pred EEEECCCCHHHHHHHHHHHHCCCCEEEEEEEECCCCCCEEE--ECCCCEEEE-E---ECCHH----------HHCCCCEE
Q ss_conf 99981667789999999974499807899997476587560--027815899-8---77943----------63188478
Q gi|254780307|r 5 VAVVGATGNVGREMLNIICERGFPISEVVALASERSAGTKV--PFGKETIDV-Q---DVKSY----------DFSDTDIC 68 (335)
Q Consensus 5 vaIiGatG~vG~el~~lL~~~~~p~~~l~~~~s~~~~G~~i--~~~~~~~~~-~---~~~~~----------~~~~~Div 68 (335)
++.+| |..|..|++.|.+.+....-+ .........-.+ ...+....+ . .+.+. .+...|++
T Consensus 58 ig~vG--g~~G~~l~~~L~~~gv~~~~v-~~~~~~r~~~~I~v~~~g~~~~i~~~G~~~~~~~~~~l~~~~~~~~~~~~l 134 (309)
T PRK10294 58 IFPAG--GATGEHLVSLLADENVPVATV-EAKDWTRQNLHVHVEASGEQYRFVMPGAALNEDEFRQLEEQVLEIESGAIL 134 (309)
T ss_pred EEEEC--CCCHHHHHHHHHHCCCCEEEE-EECCCCCEEEEEEECCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCEE
T ss_conf 99914--876899999999869964699-964888237999983798279997779999999999999999845669889
Q ss_pred EEC--CC----HHHHHHHHHHHCCCCEE-EEECCCCHHCCCCCCCCCCC---HHHHHHCCCCCCCEECCCCCCCCCCCCC
Q ss_conf 606--87----58999999750456517-99614510011211123641---0111110333431212676432221112
Q gi|254780307|r 69 LMS--AG----HAVSSQMSPKIAANGCI-VIDNSSAWRYDSDVPLIVPE---VNPQTISLASRKNIIANPNCSTIQLVVA 138 (335)
Q Consensus 69 f~a--~p----~~~s~~~~~~~~~~g~~-VIDlS~~~R~~~d~p~~lPe---in~~~i~~~~~~~~VanPgC~at~~~l~ 138 (335)
.++ +| .+...++...+.+.|++ ++|.|++. +.+...+.-|+ .|.+.+....... +. ...-+..+
T Consensus 135 vi~gslP~gv~~~~~~~li~~a~~~g~~vilD~sg~~-l~~~~~~~~~d~ikPN~~El~~l~g~~-~~----~~~~~~~a 208 (309)
T PRK10294 135 VISGSLPPGVKLEKLTQLISAAQKQGIRCIIDSSGEA-LSAALAIGNIELVKPNQKELSALVNRE-LT----QPDDVRKA 208 (309)
T ss_pred EEECCCCCCCCHHHHHHHHHHHHHCCCEEEECCCHHH-HHHHHHCCCCCEECCCHHHHHHHHCCC-CC----CHHHHHHH
T ss_conf 9967889999999999999999976998995697677-655664389858857889999984988-89----99999999
Q ss_pred CCHHHHCCCCCCEEEE
Q ss_conf 2001101787411465
Q gi|254780307|r 139 LKPLHDLAMIKRVVVT 154 (335)
Q Consensus 139 L~PL~~~~~i~~v~v~ 154 (335)
...|.+.+.+++|++|
T Consensus 209 a~~l~~~g~~~~VivT 224 (309)
T PRK10294 209 AQEIVNSGKARRVVVS 224 (309)
T ss_pred HHHHHHCCCCCEEEEE
T ss_conf 9999973998889998
No 431
>COG3320 Putative dehydrogenase domain of multifunctional non-ribosomal peptide synthetases and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=63.55 E-value=11 Score=17.45 Aligned_cols=31 Identities=32% Similarity=0.446 Sum_probs=22.2
Q ss_pred EEEEEECCCCHHHHHHHHHHHHCCCCEEEEEEE
Q ss_conf 179998166778999999997449980789999
Q gi|254780307|r 3 FKVAVVGATGNVGREMLNIICERGFPISEVVAL 35 (335)
Q Consensus 3 ~kvaIiGatG~vG~el~~lL~~~~~p~~~l~~~ 35 (335)
.+|.+-|||||.|.-|++-|..+ +..++.++
T Consensus 1 ~~vlLTGATGFLG~yLl~eLL~~--~~~kv~cL 31 (382)
T COG3320 1 RNVLLTGATGFLGAYLLLELLDR--SDAKVICL 31 (382)
T ss_pred CEEEEECCCHHHHHHHHHHHHHC--CCCCEEEE
T ss_conf 91899457027699999999716--88728999
No 432
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=63.32 E-value=11 Score=17.43 Aligned_cols=85 Identities=18% Similarity=0.284 Sum_probs=50.4
Q ss_pred EEEE--ECCCCHHHHHHHHHHHHCCCCEEEEEEEECCCCCCEEEECCCCEEEEEECCHHHHCCCCEEEECCCHHHHHH--
Q ss_conf 7999--816677899999999744998078999974765875600278158998779436318847860687589999--
Q gi|254780307|r 4 KVAV--VGATGNVGREMLNIICERGFPISEVVALASERSAGTKVPFGKETIDVQDVKSYDFSDTDICLMSAGHAVSSQ-- 79 (335)
Q Consensus 4 kvaI--iGatG~vG~el~~lL~~~~~p~~~l~~~~s~~~~G~~i~~~~~~~~~~~~~~~~~~~~Divf~a~p~~~s~~-- 79 (335)
||-+ +|.||++++.+...|.+-+.+.. ++... ..-.+..-|++|.--.+|.+.+
T Consensus 32 ~I~v~G~G~Sg~ia~~~a~rL~~~G~~~~---~~~d~-------------------~~~~i~~~Dv~I~iS~SGeT~e~~ 89 (179)
T TIGR03127 32 RIFVAGAGRSGLVGKAFAMRLMHLGFNVY---VVGET-------------------TTPSIKKGDLLIAISGSGETESLV 89 (179)
T ss_pred CEEEEEECCHHHHHHHHHHHHHHCCCEEE---EECCC-------------------CCCCCCCCCEEEEECCCCCCHHHH
T ss_conf 09999955439999999999985197579---97644-------------------446699999999981999968999
Q ss_pred -HHHHHCCCCEEEEECCCCH----HCCCCCCCCCCC
Q ss_conf -9975045651799614510----011211123641
Q gi|254780307|r 80 -MSPKIAANGCIVIDNSSAW----RYDSDVPLIVPE 110 (335)
Q Consensus 80 -~~~~~~~~g~~VIDlS~~~----R~~~d~p~~lPe 110 (335)
.++.+.+.|+++|-..+.- .--.|+.+.+|.
T Consensus 90 ~~~~~aK~~ga~ii~IT~~~~S~Lak~aD~~l~ip~ 125 (179)
T TIGR03127 90 TVAKKAKEIGATVAAITTNPESTLGKLADVVVEIPA 125 (179)
T ss_pred HHHHHHHHCCCEEEEEECCCCCHHHHHCCEEEEECC
T ss_conf 999999987992999979898977994999999068
No 433
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=63.21 E-value=11 Score=17.41 Aligned_cols=40 Identities=28% Similarity=0.423 Sum_probs=27.1
Q ss_pred EEEEEECCCCHHHHHHHHHHHHCCCCEEEEEEEECCCCCCEEEE
Q ss_conf 17999816677899999999744998078999974765875600
Q gi|254780307|r 3 FKVAVVGATGNVGREMLNIICERGFPISEVVALASERSAGTKVP 46 (335)
Q Consensus 3 ~kvaIiGatG~vG~el~~lL~~~~~p~~~l~~~~s~~~~G~~i~ 46 (335)
.||||||+ |=.|..--.-|...+| ++..+-.....|=.+.
T Consensus 144 kkVAVIGs-GPAGLsaA~~Lar~G~---~VtVfE~~~~~GGll~ 183 (472)
T PRK12810 144 KKVAVVGS-GPAGLAAADQLARAGH---KVTVFERDDRIGGLLR 183 (472)
T ss_pred CEEEEECC-CHHHHHHHHHHHHCCC---EEEEEECCCCCCCEEE
T ss_conf 98999897-7899999999986697---5899725777775465
No 434
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=63.08 E-value=11 Score=17.40 Aligned_cols=72 Identities=24% Similarity=0.429 Sum_probs=41.9
Q ss_pred EEEEEECCCCHHHHHHHHHHHHCCCCEEEEEEEECCCCCCEEEECC---------------------CCEE----EE-EE
Q ss_conf 1799981667789999999974499807899997476587560027---------------------8158----99-87
Q gi|254780307|r 3 FKVAVVGATGNVGREMLNIICERGFPISEVVALASERSAGTKVPFG---------------------KETI----DV-QD 56 (335)
Q Consensus 3 ~kvaIiGatG~vG~el~~lL~~~~~p~~~l~~~~s~~~~G~~i~~~---------------------~~~~----~~-~~ 56 (335)
-||||||+ |=.|.---.-|...+| ++..+-....+|=-+.++ +-++ .+ +|
T Consensus 194 KkVAIIGa-GPAGLsaAy~L~~~Gh---~VTVfE~~~~~GGmlryGIP~yRLPk~vld~EI~~i~~~GV~~~~n~~vG~d 269 (652)
T PRK12814 194 KKVAIIGA-GPAGLTAAYYLLRKGH---DVTIFDANEQAGGMMRYGIPRFRLPESVIDADIAPLRAMGAEFRFNTVFGRD 269 (652)
T ss_pred CEEEEECC-CHHHHHHHHHHHHCCC---EEEEEECCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHCCCEEEEEEEECCC
T ss_conf 97999683-7899999999997799---0699815888898676448633389999999999999719858866794774
Q ss_pred CCHHHH-CCCCEEEECCCHHHHH
Q ss_conf 794363-1884786068758999
Q gi|254780307|r 57 VKSYDF-SDTDICLMSAGHAVSS 78 (335)
Q Consensus 57 ~~~~~~-~~~Divf~a~p~~~s~ 78 (335)
++-.++ ++.|.||++.+...++
T Consensus 270 itl~~L~~~yDAVflaiGa~~~r 292 (652)
T PRK12814 270 ITLEELQKEFDAVLLAVGAQKAS 292 (652)
T ss_pred CCHHHHHHHCCEEEEEECCCCCC
T ss_conf 77999986589999975578774
No 435
>PRK09330 cell division protein FtsZ; Validated
Probab=63.00 E-value=11 Score=17.39 Aligned_cols=98 Identities=16% Similarity=0.343 Sum_probs=55.1
Q ss_pred EEEEEECCCCHHHHHHHHHHHHCCCCEEEEEEEECCCC------CCEEEECCCCEE---------------EEEECCH--
Q ss_conf 17999816677899999999744998078999974765------875600278158---------------9987794--
Q gi|254780307|r 3 FKVAVVGATGNVGREMLNIICERGFPISEVVALASERS------AGTKVPFGKETI---------------DVQDVKS-- 59 (335)
Q Consensus 3 ~kvaIiGatG~vG~el~~lL~~~~~p~~~l~~~~s~~~------~G~~i~~~~~~~---------------~~~~~~~-- 59 (335)
-||-|+|. |=.|...+..|.+.+...+++..+-++.. +-.++..+.+-. ..++.+.
T Consensus 13 a~IkViGv-GG~G~Navn~m~~~~i~gv~fia~NTD~q~L~~s~a~~ki~lG~~~T~GlGAG~~Pe~G~~AA~es~~~I~ 91 (387)
T PRK09330 13 AVIKVIGV-GGGGGNAVNRMIEEGIQGVEFIAANTDAQALLKSKAPVKIQLGEKLTRGLGAGANPEVGRKAAEESREEIR 91 (387)
T ss_pred CEEEEEEE-CCCCHHHHHHHHHCCCCCEEEEEECCHHHHHHCCCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 72899966-88638999999985998707999826099984599982597077756888888781788999999999999
Q ss_pred HHHCCCCEEEECC------CHHHHHHHHHHHCCCCEEEEEC-CCCHHCC
Q ss_conf 3631884786068------7589999997504565179961-4510011
Q gi|254780307|r 60 YDFSDTDICLMSA------GHAVSSQMSPKIAANGCIVIDN-SSAWRYD 101 (335)
Q Consensus 60 ~~~~~~Divf~a~------p~~~s~~~~~~~~~~g~~VIDl-S~~~R~~ 101 (335)
..+.+.|+||.++ +.+++.-+++.+.+.|+.+|-. .-.|+++
T Consensus 92 ~~l~g~dmvFItAGmGGGTGTGAaPviA~iAke~g~LtV~vVT~PF~fE 140 (387)
T PRK09330 92 EALEGADMVFITAGMGGGTGTGAAPVVAEIAKEMGILTVGVVTKPFSFE 140 (387)
T ss_pred HHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCEEEC
T ss_conf 9977898799962667887776048999988557984999995895101
No 436
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed
Probab=62.99 E-value=11 Score=17.39 Aligned_cols=64 Identities=19% Similarity=0.204 Sum_probs=34.2
Q ss_pred CCEEEEEECCCC---------HHHHHHHHHHHHCCCCEEEEEEEECCCCCCEEEECCCCEEEEEECCHHHHCCCCEEEEC
Q ss_conf 961799981667---------78999999997449980789999747658756002781589987794363188478606
Q gi|254780307|r 1 MTFKVAVVGATG---------NVGREMLNIICERGFPISEVVALASERSAGTKVPFGKETIDVQDVKSYDFSDTDICLMS 71 (335)
Q Consensus 1 M~~kvaIiGatG---------~vG~el~~lL~~~~~p~~~l~~~~s~~~~G~~i~~~~~~~~~~~~~~~~~~~~Divf~a 71 (335)
|+|||+|+-+ | ..|+...+-|.+.+| ++..+.-.+ . ......-.+.|+||.|
T Consensus 3 ~~~kI~vl~G-G~S~E~eVSl~S~~~v~~aL~~~~y---~v~~id~~~----------~-----~~~~l~~~~~D~vf~~ 63 (304)
T PRK01372 3 MFGKVAVLMG-GTSAEREVSLNSGAAVLAALREAGY---DAHPIDPGE----------D-----PAAELKELGFDRVFNA 63 (304)
T ss_pred CCCCEEEEEC-CCCHHHHHHHHHHHHHHHHHHHCCC---EEEEECCCC----------C-----HHHHHHHCCCCEEEEE
T ss_conf 7771899936-7871289999999999998837599---799982896----------4-----6778753399999990
Q ss_pred C-----CHHHHHHHHHH
Q ss_conf 8-----75899999975
Q gi|254780307|r 72 A-----GHAVSSQMSPK 83 (335)
Q Consensus 72 ~-----p~~~s~~~~~~ 83 (335)
+ .++.-+.+.+.
T Consensus 64 lHG~~GEDG~iQglLe~ 80 (304)
T PRK01372 64 LHGRGGEDGTIQGLLEL 80 (304)
T ss_pred CCCCCCCCHHHHHHHHH
T ss_conf 68999856499999998
No 437
>PRK06029 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Provisional
Probab=62.92 E-value=11 Score=17.38 Aligned_cols=37 Identities=24% Similarity=0.392 Sum_probs=26.0
Q ss_pred CC-EEEEEECCCCH-HHHHHHHHHHHCCCCEEEEEEEECCC
Q ss_conf 96-17999816677-89999999974499807899997476
Q gi|254780307|r 1 MT-FKVAVVGATGN-VGREMLNIICERGFPISEVVALASER 39 (335)
Q Consensus 1 M~-~kvaIiGatG~-vG~el~~lL~~~~~p~~~l~~~~s~~ 39 (335)
|+ +=|||-||||. -|.+|++.|.+. ..+|+..+-|+.
T Consensus 1 MkrIvvgITGASGa~ya~rll~~L~~~--~~~ev~lv~S~~ 39 (187)
T PRK06029 1 MKRLIVGISGASGAIYGVRLLQVLRDV--EEVETHLVISQA 39 (187)
T ss_pred CCEEEEEEECHHHHHHHHHHHHHHHHC--CCCEEEEEECHH
T ss_conf 973999985288899999999998642--895699998868
No 438
>PRK06924 short chain dehydrogenase; Provisional
Probab=62.72 E-value=9.4 Score=17.77 Aligned_cols=31 Identities=16% Similarity=0.537 Sum_probs=22.8
Q ss_pred EEEEEE-CCCCHHHHHHHHHHHHCCCCEEEEEEEE
Q ss_conf 179998-1667789999999974499807899997
Q gi|254780307|r 3 FKVAVV-GATGNVGREMLNIICERGFPISEVVALA 36 (335)
Q Consensus 3 ~kvaIi-GatG~vG~el~~lL~~~~~p~~~l~~~~ 36 (335)
||+++| ||++=+|..+.+.|.++++ .+..++
T Consensus 1 MK~alITGas~GIG~aiA~~la~~G~---~V~~~~ 32 (251)
T PRK06924 1 MRYVIITGTSKGLGEAIATQLLEKGT---SVISIS 32 (251)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCC---EEEEEE
T ss_conf 99999929874999999999998799---999997
No 439
>PRK13018 cell division protein FtsZ; Provisional
Probab=62.54 E-value=11 Score=17.34 Aligned_cols=98 Identities=20% Similarity=0.400 Sum_probs=58.3
Q ss_pred EEEEEECCCCHHHHHHHHHHHHCCCCEEEEEEEECCC------CCCEEEECCCCEE---------------EEEECCH--
Q ss_conf 1799981667789999999974499807899997476------5875600278158---------------9987794--
Q gi|254780307|r 3 FKVAVVGATGNVGREMLNIICERGFPISEVVALASER------SAGTKVPFGKETI---------------DVQDVKS-- 59 (335)
Q Consensus 3 ~kvaIiGatG~vG~el~~lL~~~~~p~~~l~~~~s~~------~~G~~i~~~~~~~---------------~~~~~~~-- 59 (335)
-||-|+|--| .|..-+..|.+.+...+|+..+-++. .+-+++..+.+-. ..++.+.
T Consensus 28 ~kIkViGvGG-~G~Navn~M~~~gi~gVefia~NTD~Q~L~~s~a~~ki~lG~~~T~GLGAG~~PeiG~~AAees~~~I~ 106 (387)
T PRK13018 28 PKIKVVGVGG-AGNNTVNRLYDIGIEGAETIAINTDAQHLAMIKADKKILIGKTLTRGLGAGGDPEVGRKAAEESRDEIK 106 (387)
T ss_pred CCEEEEEECC-CHHHHHHHHHHCCCCCCEEEEECCHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 8689997688-639999999983999834999816599983699982798577657889998883899999998299999
Q ss_pred HHHCCCCEEEECC------CHHHHHHHHHHHCCCCEEEEEC-CCCHHCC
Q ss_conf 3631884786068------7589999997504565179961-4510011
Q gi|254780307|r 60 YDFSDTDICLMSA------GHAVSSQMSPKIAANGCIVIDN-SSAWRYD 101 (335)
Q Consensus 60 ~~~~~~Divf~a~------p~~~s~~~~~~~~~~g~~VIDl-S~~~R~~ 101 (335)
..+.+.|+||.++ +.+++.-+++.+.+.|+.+|-. +-.|+++
T Consensus 107 ~~l~g~DmVFItAGmGGGTGTGAAPVIA~iAke~GaLtVavVT~PF~fE 155 (387)
T PRK13018 107 EVLKGADLVFVTAGMGGGTGTGAAPVVAEIAKEQGALVIGVVTKPFKFE 155 (387)
T ss_pred HHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCEEEEEECCCHHHH
T ss_conf 9975898699995347851377789999999981993999944895777
No 440
>PRK06475 salicylate hydroxylase; Provisional
Probab=62.43 E-value=11 Score=17.33 Aligned_cols=27 Identities=22% Similarity=0.416 Sum_probs=22.3
Q ss_pred EEEEEECCCCHHHHHHHHHHHHCCCCEE
Q ss_conf 1799981667789999999974499807
Q gi|254780307|r 3 FKVAVVGATGNVGREMLNIICERGFPIS 30 (335)
Q Consensus 3 ~kvaIiGatG~vG~el~~lL~~~~~p~~ 30 (335)
-.|.|+|| |.+|.-+--.|.+++++..
T Consensus 3 ~~VlIVGa-GiaGL~~A~~L~~~G~~v~ 29 (400)
T PRK06475 3 GSILIAGA-GVAGLSAALELAARGWAVT 29 (400)
T ss_pred CCEEEECC-CHHHHHHHHHHHHCCCCEE
T ss_conf 97999895-8899999999997899999
No 441
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=62.13 E-value=11 Score=17.29 Aligned_cols=84 Identities=13% Similarity=0.212 Sum_probs=44.8
Q ss_pred EEEEECCCCHHHH-HHHHHHHHCCCCEEEEEEEECCCCCCE---EEECCCCEEEEEECCHHHHCCCCEEEECCCHHHHHH
Q ss_conf 7999816677899-999999744998078999974765875---600278158998779436318847860687589999
Q gi|254780307|r 4 KVAVVGATGNVGR-EMLNIICERGFPISEVVALASERSAGT---KVPFGKETIDVQDVKSYDFSDTDICLMSAGHAVSSQ 79 (335)
Q Consensus 4 kvaIiGatG~vG~-el~~lL~~~~~p~~~l~~~~s~~~~G~---~i~~~~~~~~~~~~~~~~~~~~Divf~a~p~~~s~~ 79 (335)
||-++|. |=.|. -|-++|.++++.+ . +|+..... .+...+-.+. ...+...+.+.|+++..-+=....+
T Consensus 10 ~ih~iGi-gG~GmsalA~~l~~~G~~V---~--gsD~~~~~~~~~L~~~Gi~v~-~g~~~~~l~~~d~vV~Sp~I~~~~p 82 (459)
T PRK00421 10 RIHFVGI-GGIGMSGLAEVLLNLGYKV---S--GSDLKESAVTQRLLELGAIIF-IGHDAENIKGADVVVVSSAIKPDNP 82 (459)
T ss_pred EEEEEEE-CHHHHHHHHHHHHHCCCEE---E--EECCCCCHHHHHHHHCCCEEE-CCCCHHHCCCCCEEEECCCCCCCCH
T ss_conf 8999986-6888999999999689939---9--988989978999997879997-7989798799999998998599899
Q ss_pred HHHHHCCCCEEEEEC
Q ss_conf 997504565179961
Q gi|254780307|r 80 MSPKIAANGCIVIDN 94 (335)
Q Consensus 80 ~~~~~~~~g~~VIDl 94 (335)
.+..+.+.|..|+.-
T Consensus 83 ~~~~a~~~gi~v~~~ 97 (459)
T PRK00421 83 ELVAARELGIPVVRR 97 (459)
T ss_pred HHHHHHHCCCCEEEH
T ss_conf 999999879979889
No 442
>cd05005 SIS_PHI Hexulose-6-phosphate isomerase (PHI). PHI is a member of the SIS (Sugar ISomerase domain) superfamily. In the ribulose monophosphate pathway of formaldehyde fixation, hexulose-6-phosphate synthase catalyzes the condensation of ribulose-5-phosphate with formadelhyde to become hexulose-6-phosphate, which is then isomerized to fructose-6-phosphate by PHI.
Probab=61.90 E-value=11 Score=17.27 Aligned_cols=85 Identities=18% Similarity=0.258 Sum_probs=48.1
Q ss_pred EEEEE--CCCCHHHHHHHHHHHHCCCCEEEEEEEECCCCCCEEEECCCCEEEEEECCHHHHCCCCEEEECCCHHHHHH--
Q ss_conf 79998--16677899999999744998078999974765875600278158998779436318847860687589999--
Q gi|254780307|r 4 KVAVV--GATGNVGREMLNIICERGFPISEVVALASERSAGTKVPFGKETIDVQDVKSYDFSDTDICLMSAGHAVSSQ-- 79 (335)
Q Consensus 4 kvaIi--GatG~vG~el~~lL~~~~~p~~~l~~~~s~~~~G~~i~~~~~~~~~~~~~~~~~~~~Divf~a~p~~~s~~-- 79 (335)
||.+. |.||++++.+-..|.+-+.|.. ++.+. ....+..-|+++..-.+|.+++
T Consensus 35 ~I~~~G~G~Sg~va~~~a~rl~~lG~~~~---~~~d~-------------------~~~~i~~~Dv~I~iS~SG~T~~~~ 92 (179)
T cd05005 35 RIFVYGAGRSGLVAKAFAMRLMHLGLNVY---VVGET-------------------TTPAIGPGDLLIAISGSGETSSVV 92 (179)
T ss_pred CEEEEEECCHHHHHHHHHHHHHHCCCCEE---EECCC-------------------CCCCCCCCCEEEEECCCCCCHHHH
T ss_conf 48999856258779999999973598012---43565-------------------557799999999981999956899
Q ss_pred -HHHHHCCCCEEEEECCCCH----HCCCCCCCCCCC
Q ss_conf -9975045651799614510----011211123641
Q gi|254780307|r 80 -MSPKIAANGCIVIDNSSAW----RYDSDVPLIVPE 110 (335)
Q Consensus 80 -~~~~~~~~g~~VIDlS~~~----R~~~d~p~~lPe 110 (335)
.++.+.+.|++||-+.+.. .--.|+.+.+|.
T Consensus 93 ~~~~~aK~~ga~iI~IT~~~~S~la~~aD~~l~ip~ 128 (179)
T cd05005 93 NAAEKAKKAGAKVVLITSNPDSPLAKLADVVVVIPA 128 (179)
T ss_pred HHHHHHHHCCCEEEEEECCCCCHHHHHCCEEEECCC
T ss_conf 999999987991999979899978995899998187
No 443
>PRK12743 acetoin dehydrogenase; Provisional
Probab=61.24 E-value=12 Score=17.20 Aligned_cols=26 Identities=27% Similarity=0.658 Sum_probs=22.3
Q ss_pred CCEEEEEE-CCCCHHHHHHHHHHHHCCC
Q ss_conf 96179998-1667789999999974499
Q gi|254780307|r 1 MTFKVAVV-GATGNVGREMLNIICERGF 27 (335)
Q Consensus 1 M~~kvaIi-GatG~vG~el~~lL~~~~~ 27 (335)
|. ||++| |+++=+|+.+.+.|.+++.
T Consensus 1 M~-KValITGgs~GIG~a~a~~la~~Ga 27 (253)
T PRK12743 1 MA-QVAIVTASDSGIGKACALLLAQQGF 27 (253)
T ss_pred CC-CEEEEECCCCHHHHHHHHHHHHCCC
T ss_conf 99-9899907588999999999998799
No 444
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=61.19 E-value=12 Score=17.19 Aligned_cols=26 Identities=23% Similarity=0.469 Sum_probs=21.7
Q ss_pred EEEEEECCCCHHHHHHHHHHHHCCCCE
Q ss_conf 179998166778999999997449980
Q gi|254780307|r 3 FKVAVVGATGNVGREMLNIICERGFPI 29 (335)
Q Consensus 3 ~kvaIiGatG~vG~el~~lL~~~~~p~ 29 (335)
+.|.|+|+ |.+|.-+--.|.++++..
T Consensus 7 ~DV~IvGa-Gp~Gl~lA~~L~~~G~~v 32 (392)
T PRK08773 7 RDAVIVGG-GVVGAACALALADAGLSV 32 (392)
T ss_pred CCEEEECC-CHHHHHHHHHHHHCCCCE
T ss_conf 98899990-699999999998669978
No 445
>COG0281 SfcA Malic enzyme [Energy production and conversion]
Probab=61.11 E-value=12 Score=17.18 Aligned_cols=10 Identities=50% Similarity=0.969 Sum_probs=6.3
Q ss_pred CCCCCCCCCC
Q ss_conf 2112321100
Q gi|254780307|r 159 VSGAGKKGID 168 (335)
Q Consensus 159 ~SGaG~~~~~ 168 (335)
++|||..|+-
T Consensus 204 ~~GAGAAgia 213 (432)
T COG0281 204 INGAGAAGIA 213 (432)
T ss_pred EECCCHHHHH
T ss_conf 9677588999
No 446
>KOG1221 consensus
Probab=61.01 E-value=12 Score=17.17 Aligned_cols=31 Identities=26% Similarity=0.445 Sum_probs=22.8
Q ss_pred EEEEECCCCHHHHHHHHHHHHCCCCEE-EEEEE
Q ss_conf 799981667789999999974499807-89999
Q gi|254780307|r 4 KVAVVGATGNVGREMLNIICERGFPIS-EVVAL 35 (335)
Q Consensus 4 kvaIiGatG~vG~el~~lL~~~~~p~~-~l~~~ 35 (335)
.|.|.||||+.|..|++-|.... |.+ .+.++
T Consensus 14 ~i~vTG~tGFlgKVliEklLr~~-p~v~~IYlL 45 (467)
T KOG1221 14 TIFVTGATGFLGKVLIEKLLRTT-PDVKRIYLL 45 (467)
T ss_pred EEEEECCCCHHHHHHHHHHHHCC-CCCCEEEEE
T ss_conf 59997276345789999998507-676569999
No 447
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=60.91 E-value=5.8 Score=19.05 Aligned_cols=17 Identities=18% Similarity=0.393 Sum_probs=7.1
Q ss_pred EEEECCCCHHHHHHHHH
Q ss_conf 99981667789999999
Q gi|254780307|r 5 VAVVGATGNVGREMLNI 21 (335)
Q Consensus 5 vaIiGatG~vG~el~~l 21 (335)
++|.+-.+-.|-.|...
T Consensus 13 ~~~~~~p~~~~~~mHN~ 29 (272)
T PRK12550 13 ISLAARPSNFGTRFHNY 29 (272)
T ss_pred EEECCCCCCCCHHHHHH
T ss_conf 99446988677899999
No 448
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=60.52 E-value=12 Score=17.12 Aligned_cols=41 Identities=32% Similarity=0.470 Sum_probs=28.2
Q ss_pred EEEEEECCCCHHHHHHHHHHHHCCCCEEEEEEEECCCCCCEEEEC
Q ss_conf 179998166778999999997449980789999747658756002
Q gi|254780307|r 3 FKVAVVGATGNVGREMLNIICERGFPISEVVALASERSAGTKVPF 47 (335)
Q Consensus 3 ~kvaIiGatG~vG~el~~lL~~~~~p~~~l~~~~s~~~~G~~i~~ 47 (335)
-||||||+ |=.|.---.-|...+|. +..+-.....|=.+.+
T Consensus 311 kKVAVIGs-GPAGLaaA~~Lar~G~~---VTVfE~~~~~GGlL~y 351 (639)
T PRK12809 311 EKVAVIGA-GPAGLGCADILARAGVQ---VDVFDRHPEIGGMLTF 351 (639)
T ss_pred CEEEEECC-CHHHHHHHHHHHHCCCC---EEEEECCCCCCCEEEE
T ss_conf 98999897-58999999999975990---6999368888986853
No 449
>PRK12861 malic enzyme; Reviewed
Probab=60.01 E-value=12 Score=17.07 Aligned_cols=91 Identities=21% Similarity=0.370 Sum_probs=50.8
Q ss_pred EEEEEECCCCHHHHHHHHHHHHCCCCEEEEEEEECCCC--CCEEEECC-CCE-EE-EEECC--HHHHCCCCEEE-ECCCH
Q ss_conf 17999816677899999999744998078999974765--87560027-815-89-98779--43631884786-06875
Q gi|254780307|r 3 FKVAVVGATGNVGREMLNIICERGFPISEVVALASERS--AGTKVPFG-KET-ID-VQDVK--SYDFSDTDICL-MSAGH 74 (335)
Q Consensus 3 ~kvaIiGatG~vG~el~~lL~~~~~p~~~l~~~~s~~~--~G~~i~~~-~~~-~~-~~~~~--~~~~~~~Divf-~a~p~ 74 (335)
+||.+.|| |..|....++|..-+.+.-++....|..- .|+.-..+ .+. +. -.+.. .+.+.++|+.+ ++.|+
T Consensus 188 ~kiv~~Ga-Gaa~ia~~~l~~~~G~~~~ni~~~D~~G~i~~~r~~~~~~~k~~~a~~t~~~~l~ea~~gaDvfiG~S~~~ 266 (762)
T PRK12861 188 VKVVTSGA-GAAALACLDLLVDLGLPVENIWVTDIEGVVYRGRTTLMDPAKERFAQETDARTLAEVIGGADVFLGLSAGG 266 (762)
T ss_pred EEEEEECC-CHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHCCCCEEEECCCCC
T ss_conf 16999687-78899999999983999555899947785118986535799999985689777999837898899767899
Q ss_pred HHHHHHHHHHCCCCEEEEECC
Q ss_conf 899999975045651799614
Q gi|254780307|r 75 AVSSQMSPKIAANGCIVIDNS 95 (335)
Q Consensus 75 ~~s~~~~~~~~~~g~~VIDlS 95 (335)
-.+.++++.-.+. .+|+-++
T Consensus 267 ~~~~~mv~~Ma~~-pivfalA 286 (762)
T PRK12861 267 VLKAEMLKAMAAR-PLILALA 286 (762)
T ss_pred CCCHHHHHHHCCC-CEEEECC
T ss_conf 8999999853778-7699726
No 450
>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated
Probab=59.67 E-value=12 Score=17.03 Aligned_cols=24 Identities=29% Similarity=0.551 Sum_probs=20.2
Q ss_pred EEEEE-CCCCHHHHHHHHHHHHCCC
Q ss_conf 79998-1667789999999974499
Q gi|254780307|r 4 KVAVV-GATGNVGREMLNIICERGF 27 (335)
Q Consensus 4 kvaIi-GatG~vG~el~~lL~~~~~ 27 (335)
|++|| |+++-+|+++.+.|.+++.
T Consensus 12 KvalVTGas~GIG~aia~~la~~Ga 36 (255)
T PRK06113 12 KCAIITGAGAGIGKEIAITFATAGA 36 (255)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCC
T ss_conf 9899958877899999999998799
No 451
>PRK00742 chemotaxis-specific methylesterase; Provisional
Probab=59.15 E-value=7.3 Score=18.44 Aligned_cols=56 Identities=27% Similarity=0.255 Sum_probs=37.5
Q ss_pred CCEEEEEECCCCHHHHHHHHHHHHCCCCEEEEEEEECCCC-CCEEEECCCCEEEEEECC
Q ss_conf 9617999816677899999999744998078999974765-875600278158998779
Q gi|254780307|r 1 MTFKVAVVGATGNVGREMLNIICERGFPISEVVALASERS-AGTKVPFGKETIDVQDVK 58 (335)
Q Consensus 1 M~~kvaIiGatG~vG~el~~lL~~~~~p~~~l~~~~s~~~-~G~~i~~~~~~~~~~~~~ 58 (335)
||+||.|+==+-.+-..|-++|++. |.+++...+++-. +=+.+.....++.+.|+.
T Consensus 1 MkirVLIVDDs~~~R~~l~~~L~~~--~~~eVv~~A~nG~eAl~~~~~~~pDvVllDi~ 57 (345)
T PRK00742 1 MKIRVLVVDDSAFMRRLLSEILNSD--PDIEVVGTARDGLEAVEKIKKLNPDVITLDVE 57 (345)
T ss_pred CCCEEEEEECCHHHHHHHHHHHHHC--CCEEEEEEECCHHHHHHHHHHCCCCEEEEECC
T ss_conf 9826999929889999999999728--99089999899999999988609999998378
No 452
>PRK13508 tagatose-6-phosphate kinase; Provisional
Probab=58.80 E-value=13 Score=16.94 Aligned_cols=139 Identities=14% Similarity=0.161 Sum_probs=64.5
Q ss_pred EEEEECCCCHHHHHHHHHHHHCCCCEEEEEEE--ECCCCCCEEEECCCCEEEEEE----CCHH-----------HHCCCC
Q ss_conf 79998166778999999997449980789999--747658756002781589987----7943-----------631884
Q gi|254780307|r 4 KVAVVGATGNVGREMLNIICERGFPISEVVAL--ASERSAGTKVPFGKETIDVQD----VKSY-----------DFSDTD 66 (335)
Q Consensus 4 kvaIiGatG~vG~el~~lL~~~~~p~~~l~~~--~s~~~~G~~i~~~~~~~~~~~----~~~~-----------~~~~~D 66 (335)
-++++| |+.|+-+.+.|. .+. ...++ ..+....-.+-..++...+-+ +.+. .+...|
T Consensus 55 a~g~~G--g~~G~~i~~~L~-~~i---~~~~v~i~g~tR~~i~i~~~~~~t~i~~~Gp~i~~~~~~~ll~~~~~~~~~~d 128 (309)
T PRK13508 55 ATGFIG--GELGQFIAEHLD-DSI---KHAFYKIKGETRNCIAILHEGQQTEILEKGPEIDVQEADGFLHHFKQLLEKVE 128 (309)
T ss_pred EEEECC--CCCHHHHHHHHH-CCC---CEEEEECCCCCCEEEEEEECCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCC
T ss_conf 999638--974799999998-699---74699857997257999947967999567999999999999999998705599
Q ss_pred EEEEC--CC----HHHHHHHHHHHCCCCE-EEEECCCCHHCCC----CCCCCCCCHHHHHHCCCCCCCEECCCCCCCCCC
Q ss_conf 78606--87----5899999975045651-7996145100112----111236410111110333431212676432221
Q gi|254780307|r 67 ICLMS--AG----HAVSSQMSPKIAANGC-IVIDNSSAWRYDS----DVPLIVPEVNPQTISLASRKNIIANPNCSTIQL 135 (335)
Q Consensus 67 ivf~a--~p----~~~s~~~~~~~~~~g~-~VIDlS~~~R~~~----d~p~~lPein~~~i~~~~~~~~VanPgC~at~~ 135 (335)
++.++ +| .+.-.+++..+.+.|+ .++|.|++..... ..|+.+ --|.+.+....... +.. ..-.+
T Consensus 129 ~vvisGSlP~g~~~~~y~~li~~~~~~g~~vilD~sg~~L~~~l~~~~~P~lI-KPN~~El~~l~G~~-~~~---~~~~~ 203 (309)
T PRK13508 129 VVAISGSLPAGLPQDYYAQLIELANNKGKKVVLDCSGAALQAVLKSPYKPTVI-KPNIEELSQLLGKE-VTE---DLDEL 203 (309)
T ss_pred EEEEECCCCCCCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCCCCEE-CCCHHHHHHHHCCC-CCC---CHHHH
T ss_conf 99996888999985999999999985599899989769999998465777277-45989999983998-788---69999
Q ss_pred CCCCCHHHHCCCCCCEEEE
Q ss_conf 1122001101787411465
Q gi|254780307|r 136 VVALKPLHDLAMIKRVVVT 154 (335)
Q Consensus 136 ~l~L~PL~~~~~i~~v~v~ 154 (335)
.-+++-|... ++++|++|
T Consensus 204 ~~a~~~l~~~-Gv~~VivS 221 (309)
T PRK13508 204 KEVLQQPLFE-GIEWIIVS 221 (309)
T ss_pred HHHHHHHHHC-CCCEEEEE
T ss_conf 9999999864-88889990
No 453
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=58.29 E-value=13 Score=16.89 Aligned_cols=33 Identities=27% Similarity=0.448 Sum_probs=25.8
Q ss_pred CCEEEEEECCCCHHHHHHHHHHHHCCCCEEEEEEE
Q ss_conf 96179998166778999999997449980789999
Q gi|254780307|r 1 MTFKVAVVGATGNVGREMLNIICERGFPISEVVAL 35 (335)
Q Consensus 1 M~~kvaIiGatG~vG~el~~lL~~~~~p~~~l~~~ 35 (335)
|.+.|.|||| |-+|.-+-..|.+.. |..++..+
T Consensus 2 ~~~DvvIIGg-GI~G~a~a~~Ls~~~-p~~~V~ll 34 (429)
T COG0579 2 MDYDVVIIGG-GIMGAATAYELSEYE-PDLSVALL 34 (429)
T ss_pred CCEEEEEECC-CHHHHHHHHHHHHHC-CCCEEEEE
T ss_conf 8322999897-389899999999738-89659999
No 454
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=57.98 E-value=6.7 Score=18.64 Aligned_cols=52 Identities=23% Similarity=0.413 Sum_probs=33.3
Q ss_pred CCHHHHHHHHHHHCCCCEEEEECCCCHHCCCCCCCCCCCHHHHHHCCCCCCCEECCCCCCCCCCCC
Q ss_conf 875899999975045651799614510011211123641011111033343121267643222111
Q gi|254780307|r 72 AGHAVSSQMSPKIAANGCIVIDNSSAWRYDSDVPLIVPEVNPQTISLASRKNIIANPNCSTIQLVV 137 (335)
Q Consensus 72 ~p~~~s~~~~~~~~~~g~~VIDlS~~~R~~~d~p~~lPein~~~i~~~~~~~~VanPgC~at~~~l 137 (335)
.++=.+.+-+.++.++|... ++-|.++++.++.+++.++..-|||.+..=++
T Consensus 72 aGTV~~~e~~~~a~~aGA~F--------------iVSP~~~~~v~~~a~~~~i~~iPG~~TpsEi~ 123 (209)
T PRK06552 72 AGTVLDAVTARQAILAGAQF--------------IVSPSFNRETAKICNRYQIPYLPGCMTVTEIV 123 (209)
T ss_pred EECCCCHHHHHHHHHCCCCE--------------EECCCCCHHHHHHHHHCCCCEECCCCCHHHHH
T ss_conf 87274899999999859988--------------97699989999999985996417979999999
No 455
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=57.80 E-value=13 Score=16.84 Aligned_cols=72 Identities=21% Similarity=0.366 Sum_probs=40.8
Q ss_pred EEEEEECCCCHHHHHHHHHHHHCCCCEEEEEEEECCCCCCEEEECCCC---------------------EE----EE-EE
Q ss_conf 179998166778999999997449980789999747658756002781---------------------58----99-87
Q gi|254780307|r 3 FKVAVVGATGNVGREMLNIICERGFPISEVVALASERSAGTKVPFGKE---------------------TI----DV-QD 56 (335)
Q Consensus 3 ~kvaIiGatG~vG~el~~lL~~~~~p~~~l~~~~s~~~~G~~i~~~~~---------------------~~----~~-~~ 56 (335)
-||||||+ |=.|.---.-|...+| ++..+-.....|=.+.++-. ++ .+ +|
T Consensus 138 kkVAVIGa-GPAGLsaA~~La~~G~---~VtVfE~~~~~GGml~~GIP~yRLP~~vl~~ei~~i~~~GV~~~~n~~vg~d 213 (560)
T PRK12771 138 KRVAVIGG-GPAGLSAAYQLRRLGH---AVTIFEAGPKLGGMMRYGIPGYRLPRDVLDAEIQRILDLGVEVKLGVRVGED 213 (560)
T ss_pred CEEEEECC-CHHHHHHHHHHHHCCC---EEEEECCCCCCCCEEECCCCCCCCCHHHHHHHHHHHHHCCCEEEECCEECCC
T ss_conf 98999897-7899999999997698---5899676788898883568754475899999999999649679838784465
Q ss_pred CCHHHH-CCCCEEEECCCHHHHH
Q ss_conf 794363-1884786068758999
Q gi|254780307|r 57 VKSYDF-SDTDICLMSAGHAVSS 78 (335)
Q Consensus 57 ~~~~~~-~~~Divf~a~p~~~s~ 78 (335)
++-+++ .+.|.||+|++...++
T Consensus 214 it~~~L~~~yDAV~la~Ga~~~r 236 (560)
T PRK12771 214 ITLEQLEGDYDAVFVAIGAQLGK 236 (560)
T ss_pred CCHHHHHCCCCEEEECCCCCCCC
T ss_conf 67999717788899916878776
No 456
>PRK05865 hypothetical protein; Provisional
Probab=57.75 E-value=13 Score=16.83 Aligned_cols=91 Identities=20% Similarity=0.333 Sum_probs=46.3
Q ss_pred EEEEEECCCCHHHHHHHHHHHHCCCCEEEEEEEECCCCCCEEEECCCCEEEEEECCH-----HHHCCCCEEEECCCHHHH
Q ss_conf 179998166778999999997449980789999747658756002781589987794-----363188478606875899
Q gi|254780307|r 3 FKVAVVGATGNVGREMLNIICERGFPISEVVALASERSAGTKVPFGKETIDVQDVKS-----YDFSDTDICLMSAGHAVS 77 (335)
Q Consensus 3 ~kvaIiGatG~vG~el~~lL~~~~~p~~~l~~~~s~~~~G~~i~~~~~~~~~~~~~~-----~~~~~~Divf~a~p~~~s 77 (335)
|+|++-||+|.+|+-+-+.|...+|-..-| +..+..- .+ ..-+...-++.+ ....+.|.|.-|.|-..+
T Consensus 1 M~i~VT~A~G~lGR~va~qLia~GH~V~GI---Ar~r~~~--~~-~~~DFV~A~iRd~~~~~~a~~~AD~V~H~A~~~~~ 74 (854)
T PRK05865 1 MRIAVTGASGVLGRGLTARLLSQGHEVVGI---ARHRPDS--WP-SSADFIAADIRDATAVESAMTGADVVAHCAWVRGR 74 (854)
T ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEE---ECCCCCC--CC-CCCCEEECCCCCHHHHHHHHCCCCEEEEECCCCCC
T ss_conf 937883362157778999998668724554---0579865--67-55666632334789998752466548983121588
Q ss_pred ---------HHHHHHHCCCCE-EEEECCCCHH
Q ss_conf ---------999975045651-7996145100
Q gi|254780307|r 78 ---------SQMSPKIAANGC-IVIDNSSAWR 99 (335)
Q Consensus 78 ---------~~~~~~~~~~g~-~VIDlS~~~R 99 (335)
+.+.+...++|. .++=-|+++|
T Consensus 75 ~~~~~idG~a~V~~A~a~aG~r~i~~sqsa~~ 106 (854)
T PRK05865 75 NDHINIDGTANVLKAMAETGTGRIVFTSSGHQ 106 (854)
T ss_pred CCCCCCHHHHHHHHHHHHHCCCEEEEECCCCC
T ss_conf 76446276889999998618836998158885
No 457
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=57.37 E-value=4.2 Score=19.88 Aligned_cols=53 Identities=17% Similarity=0.328 Sum_probs=32.7
Q ss_pred CCCHHHHHHHHHHHCCCCEEEEECCCCHHCCCCCCCCCCCHHHHHHCCCCCCCEECCCCCCCCCCCC
Q ss_conf 6875899999975045651799614510011211123641011111033343121267643222111
Q gi|254780307|r 71 SAGHAVSSQMSPKIAANGCIVIDNSSAWRYDSDVPLIVPEVNPQTISLASRKNIIANPNCSTIQLVV 137 (335)
Q Consensus 71 a~p~~~s~~~~~~~~~~g~~VIDlS~~~R~~~d~p~~lPein~~~i~~~~~~~~VanPgC~at~~~l 137 (335)
..++=.+.+-+..+.++|... ++-|.+|++.++...+.++...|||.+..=++
T Consensus 75 GaGTVl~~~~~~~a~~aGA~F--------------iVSP~~~~~v~~~~~~~~~~~iPGv~TptEi~ 127 (223)
T PRK07114 75 GVGSIVDAATAALYIQLGANF--------------VVGPLFNEDIAKVCNRRKIPYSPGCGSVSEIG 127 (223)
T ss_pred EEECCCCHHHHHHHHHCCCCE--------------EECCCCCHHHHHHHHHCCCCCCCCCCCHHHHH
T ss_conf 655188999999999859989--------------99999999999999983997537319999999
No 458
>COG0163 UbiX 3-polyprenyl-4-hydroxybenzoate decarboxylase [Coenzyme metabolism]
Probab=57.34 E-value=14 Score=16.79 Aligned_cols=35 Identities=26% Similarity=0.420 Sum_probs=25.2
Q ss_pred CEEEEEECCCCHH-HHHHHHHHHHCCCCEEEEEEEECCC
Q ss_conf 6179998166778-9999999974499807899997476
Q gi|254780307|r 2 TFKVAVVGATGNV-GREMLNIICERGFPISEVVALASER 39 (335)
Q Consensus 2 ~~kvaIiGatG~v-G~el~~lL~~~~~p~~~l~~~~s~~ 39 (335)
.+=|||-||||.. |.+|++.|.+. . .|+.++-|+.
T Consensus 4 riivgisGASG~iygvrlLe~L~~~--~-~e~hlviS~~ 39 (191)
T COG0163 4 RIIVGISGASGAIYGVRLLEVLREL--G-VETHLVISKA 39 (191)
T ss_pred EEEEEEECCCCHHHHHHHHHHHHHC--C-CEEEEEECHH
T ss_conf 7999973664289999999999746--9-5699998678
No 459
>PRK08244 hypothetical protein; Provisional
Probab=56.52 E-value=14 Score=16.71 Aligned_cols=31 Identities=23% Similarity=0.392 Sum_probs=25.9
Q ss_pred CCEEEEEECCCCHHHHHHHHHHHHCCCCEEEE
Q ss_conf 96179998166778999999997449980789
Q gi|254780307|r 1 MTFKVAVVGATGNVGREMLNIICERGFPISEV 32 (335)
Q Consensus 1 M~~kvaIiGatG~vG~el~~lL~~~~~p~~~l 32 (335)
|...|.|||+ |.+|.-+--+|..++++..=+
T Consensus 1 m~tDVlIVGa-GPvGL~lAl~La~~Gv~v~vv 31 (494)
T PRK08244 1 MKTDVIIIGG-GPVGLMLASELALAGVRTCVI 31 (494)
T ss_pred CCCCEEEECC-CHHHHHHHHHHHHCCCCEEEE
T ss_conf 9989999994-789999999999779999999
No 460
>KOG3124 consensus
Probab=56.39 E-value=14 Score=16.69 Aligned_cols=159 Identities=16% Similarity=0.198 Sum_probs=78.8
Q ss_pred EEEEEECCCCHHHHHHHHHHHHCCCCEEEEEEEEC--CCCCCEEEECCCCEEEEEECCHHHHCCCCEEEECCCHHHHHHH
Q ss_conf 17999816677899999999744998078999974--7658756002781589987794363188478606875899999
Q gi|254780307|r 3 FKVAVVGATGNVGREMLNIICERGFPISEVVALAS--ERSAGTKVPFGKETIDVQDVKSYDFSDTDICLMSAGHAVSSQM 80 (335)
Q Consensus 3 ~kvaIiGatG~vG~el~~lL~~~~~p~~~l~~~~s--~~~~G~~i~~~~~~~~~~~~~~~~~~~~Divf~a~p~~~s~~~ 80 (335)
|+++.+|+ |+--+.+-+.+...+.+..+-...+. ..+.+..++-.+-+..... .+.....|++|+|.-+....++
T Consensus 1 ~~~gfiga-g~ma~ala~g~~~~Gi~~~~~i~~s~~~~~~~~~~~~~~g~~~~~~n--~~~~~~s~v~~~svKp~~i~~v 77 (267)
T KOG3124 1 MKVGFIGA-GNMAQALASGFVASGIIEANRIWASVQTERSLGLMFEALGVKTVFTN--LEVLQASDVVFLSVKPQVIESV 77 (267)
T ss_pred CCEEEECH-HHHHHHHHHCCCCCCCCCHHHEEEECCCHHHHHHHHHCCCCEEEECH--HHHHHHCCCEEEEECCHHHHHH
T ss_conf 96358635-55699997104346877522224525731666666550785344123--7777506532675361127988
Q ss_pred HHHHCC---CCEEEEECCCCHHCCCCCCCCCCCHHHHHHC-------CCCCCCEECCCCCCCCCCCCCCCH-HHHC-C--
Q ss_conf 975045---6517996145100112111236410111110-------333431212676432221112200-1101-7--
Q gi|254780307|r 81 SPKIAA---NGCIVIDNSSAWRYDSDVPLIVPEVNPQTIS-------LASRKNIIANPNCSTIQLVVALKP-LHDL-A-- 146 (335)
Q Consensus 81 ~~~~~~---~g~~VIDlS~~~R~~~d~p~~lPein~~~i~-------~~~~~~~VanPgC~at~~~l~L~P-L~~~-~-- 146 (335)
...... .+..+++...---++. .-.-++ .+.+.++ .....--+-.+||.++---..+.- |+.. +
T Consensus 78 ls~~~~~~~~~~iivS~aaG~tl~~-l~~~l~-~~~rviRvmpNtp~~v~eg~sv~~~g~~~~~~D~~l~~~ll~~vG~~ 155 (267)
T KOG3124 78 LSEIKPKVSKGKIIVSVAAGKTLSS-LESKLS-PPTRVIRVMPNTPSVVGEGASVYAIGCHATNEDLELVEELLSAVGLC 155 (267)
T ss_pred HHCCCCCCCCCEEEEEEEECCCHHH-HHHHCC-CCCCEEEECCCCHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHCCCC
T ss_conf 6047521225608999751446898-897548-87725881489800341674798507874154699999999863852
Q ss_pred -CCCCEEEEECCCCCCCCCCC
Q ss_conf -87411465215221123211
Q gi|254780307|r 147 -MIKRVVVTTYQSVSGAGKKG 166 (335)
Q Consensus 147 -~i~~v~v~s~~g~SGaG~~~ 166 (335)
.+.+..+++.+|+||+|-..
T Consensus 156 ~evpE~~iDavTgLsGSgPAy 176 (267)
T KOG3124 156 EEVPEKCIDAVTGLSGSGPAY 176 (267)
T ss_pred EECCHHHHHHHHHCCCCCHHH
T ss_conf 107487626776136774999
No 461
>PRK06123 short chain dehydrogenase; Provisional
Probab=56.32 E-value=14 Score=16.69 Aligned_cols=28 Identities=32% Similarity=0.591 Sum_probs=23.6
Q ss_pred CCEEEEEE-CCCCHHHHHHHHHHHHCCCC
Q ss_conf 96179998-16677899999999744998
Q gi|254780307|r 1 MTFKVAVV-GATGNVGREMLNIICERGFP 28 (335)
Q Consensus 1 M~~kvaIi-GatG~vG~el~~lL~~~~~p 28 (335)
|+=||++| |+++=+|.++.+.|.+++..
T Consensus 1 m~nKvalITGas~GIG~aia~~la~~Ga~ 29 (249)
T PRK06123 1 MMRKVMIITGASRGIGAATALLAAERGYA 29 (249)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCE
T ss_conf 99988999686879999999999987998
No 462
>PRK06185 hypothetical protein; Provisional
Probab=56.05 E-value=14 Score=16.66 Aligned_cols=27 Identities=19% Similarity=0.409 Sum_probs=22.9
Q ss_pred EEEEEECCCCHHHHHHHHHHHHCCCCEE
Q ss_conf 1799981667789999999974499807
Q gi|254780307|r 3 FKVAVVGATGNVGREMLNIICERGFPIS 30 (335)
Q Consensus 3 ~kvaIiGatG~vG~el~~lL~~~~~p~~ 30 (335)
-.|.|+|| |.+|.-+--+|.+.+++..
T Consensus 7 tDV~IVGa-GpaGL~lAl~Lar~Gi~V~ 33 (409)
T PRK06185 7 TDCCIVGG-GPAGMMLGLLLARAGVDVT 33 (409)
T ss_pred CCEEEECC-CHHHHHHHHHHHHCCCCEE
T ss_conf 99899991-8899999999997799999
No 463
>KOG2614 consensus
Probab=55.22 E-value=15 Score=16.58 Aligned_cols=45 Identities=24% Similarity=0.357 Sum_probs=27.8
Q ss_pred CCEEEEEECCCCHHHHHHHHHHHHCCCCEEEEEEEECCCCCCEEEE
Q ss_conf 9617999816677899999999744998078999974765875600
Q gi|254780307|r 1 MTFKVAVVGATGNVGREMLNIICERGFPISEVVALASERSAGTKVP 46 (335)
Q Consensus 1 M~~kvaIiGatG~vG~el~~lL~~~~~p~~~l~~~~s~~~~G~~i~ 46 (335)
|+-+|+|+|+ |.+|..----|.+.++...=+...-+.+..|+.+.
T Consensus 1 ~~~~VvIvGg-GI~Gla~A~~l~r~G~~v~VlE~~e~~R~~g~si~ 45 (420)
T KOG2614 1 KEPKVVIVGG-GIVGLATALALHRKGIDVVVLESREDPRGEGTSIN 45 (420)
T ss_pred CCCCEEEECC-CHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCEE
T ss_conf 9974899888-38989999999875874899862146555884112
No 464
>PRK01747 mnmC 5-methylaminomethyl-2-thiouridine methyltransferase; Reviewed
Probab=54.34 E-value=14 Score=16.76 Aligned_cols=25 Identities=24% Similarity=0.607 Sum_probs=22.3
Q ss_pred EEEEECCCCHHHHHHHHHHHHCCCCE
Q ss_conf 79998166778999999997449980
Q gi|254780307|r 4 KVAVVGATGNVGREMLNIICERGFPI 29 (335)
Q Consensus 4 kvaIiGatG~vG~el~~lL~~~~~p~ 29 (335)
+|+|||| |.+|--+-..|.++++.+
T Consensus 258 ~VaVIGA-GIAGas~A~~LA~rG~~V 282 (660)
T PRK01747 258 DAAIIGG-GIAGAALALALARRGWQV 282 (660)
T ss_pred CEEEECC-HHHHHHHHHHHHHCCCEE
T ss_conf 1899893-899999999999789968
No 465
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=53.68 E-value=16 Score=16.42 Aligned_cols=37 Identities=16% Similarity=0.198 Sum_probs=32.3
Q ss_pred CCCCEEEECCCHHHHHHHHHHHCCCCE-EEEECCCCHH
Q ss_conf 188478606875899999975045651-7996145100
Q gi|254780307|r 63 SDTDICLMSAGHAVSSQMSPKIAANGC-IVIDNSSAWR 99 (335)
Q Consensus 63 ~~~Divf~a~p~~~s~~~~~~~~~~g~-~VIDlS~~~R 99 (335)
++-.+++.|....-|...+..+.+.|. .|.++.+-|+
T Consensus 57 kd~~ivvyC~sG~RS~~Aa~~L~~~Gy~~V~~l~GG~~ 94 (379)
T PRK08762 57 HDREIVLICQSGKRSAHAAADLRELGYRRVASVAGGTS 94 (379)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCCCCEECCCCHH
T ss_conf 99859999999879999999999769966088657499
No 466
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=53.19 E-value=16 Score=16.38 Aligned_cols=78 Identities=26% Similarity=0.480 Sum_probs=40.0
Q ss_pred EEEEEECCCCHHHHHHHHHHHHCCCCEEEEEEEECCC-----CCCEEEE----C--CCCEEE----EEECCHHH-H-CCC
Q ss_conf 1799981667789999999974499807899997476-----5875600----2--781589----98779436-3-188
Q gi|254780307|r 3 FKVAVVGATGNVGREMLNIICERGFPISEVVALASER-----SAGTKVP----F--GKETID----VQDVKSYD-F-SDT 65 (335)
Q Consensus 3 ~kvaIiGatG~vG~el~~lL~~~~~p~~~l~~~~s~~-----~~G~~i~----~--~~~~~~----~~~~~~~~-~-~~~ 65 (335)
.+|+|-|. |-||+.+.+.|.+.+ ..+..++..+ ..|-.++ + ....+. .+.+++.+ | .++
T Consensus 32 ~~v~IqG~-GnVG~~~a~~L~~~G---akvv~vsD~~G~i~~~~Gld~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (227)
T cd01076 32 ARVAIQGF-GNVGSHAARFLHEAG---AKVVAVSDSDGTIYNPDGLDVPALLAYKKEHGSVLGFPGAERITNEELLELDC 107 (227)
T ss_pred CEEEEECC-CHHHHHHHHHHHHCC---CEEEEEECCCCEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCHHCCCC
T ss_conf 99999898-899999999999879---95999984787388888899999999999659802678875389623104788
Q ss_pred CEEEECC-CHHHHHHHHHHH
Q ss_conf 4786068-758999999750
Q gi|254780307|r 66 DICLMSA-GHAVSSQMSPKI 84 (335)
Q Consensus 66 Divf~a~-p~~~s~~~~~~~ 84 (335)
|+.+-|+ ++....+-++++
T Consensus 108 DI~iP~A~~~~I~~~~a~~l 127 (227)
T cd01076 108 DILIPAALENQITADNADRI 127 (227)
T ss_pred CEEEECCCCCCCCHHHHHHC
T ss_conf 78987776697799998544
No 467
>cd03360 LbH_AT_putative Putative Acyltransferase (AT), Left-handed parallel beta-Helix (LbH) domain; This group is composed of mostly uncharacterized proteins containing an N-terminal helical subdomain followed by a LbH domain. The alignment contains 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. A few members are identified as NeuD, a sialic acid (Sia) O-acetyltransferase that is required for Sia synthesis and surface polysaccharide sialylation.
Probab=52.56 E-value=16 Score=16.31 Aligned_cols=83 Identities=17% Similarity=0.177 Sum_probs=40.6
Q ss_pred EECCCCHHHHHHHHHHHHCCCCEEEEE-EEECCCCCCEEEECCCCEEEEEECCHHHHCCCCEEEECCCHHHHH-HHHHHH
Q ss_conf 981667789999999974499807899-997476587560027815899877943631884786068758999-999750
Q gi|254780307|r 7 VVGATGNVGREMLNIICERGFPISEVV-ALASERSAGTKVPFGKETIDVQDVKSYDFSDTDICLMSAGHAVSS-QMSPKI 84 (335)
Q Consensus 7 IiGatG~vG~el~~lL~~~~~p~~~l~-~~~s~~~~G~~i~~~~~~~~~~~~~~~~~~~~Divf~a~p~~~s~-~~~~~~ 84 (335)
|+|| |--|++++.++.+.+ ..++. ++...... +.-......+...+.......+-+-+|.|.++...+ ++..++
T Consensus 1 IiGa-GG~ak~v~d~i~~~~--~~~iigf~DD~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~IaIG~~~~R~ki~~~l 76 (197)
T cd03360 1 IIGA-GGHARVVADILEADS--GYEVVGFLDDDPEL-KGTEGLGLPVGLDELLLLYPPPDDEFVVAIGDNKLRRKLAEKL 76 (197)
T ss_pred CCCC-CHHHHHHHHHHHHCC--CCEEEEEEECCCCC-CCCCCCCEEECCCHHHHHCCCCCCEEEEECCCHHHHHHHHHHH
T ss_conf 9902-899999999998689--96599999698100-7732277044682788733677778999839879999999999
Q ss_pred CCCCEEEEE
Q ss_conf 456517996
Q gi|254780307|r 85 AANGCIVID 93 (335)
Q Consensus 85 ~~~g~~VID 93 (335)
.+.+.+.+.
T Consensus 77 ~~~~~~~~n 85 (197)
T cd03360 77 LAAGYRFAT 85 (197)
T ss_pred HHCCCEEEE
T ss_conf 868996789
No 468
>KOG1412 consensus
Probab=52.54 E-value=4.3 Score=19.84 Aligned_cols=75 Identities=24% Similarity=0.304 Sum_probs=37.3
Q ss_pred EEEEECC-CCHHCCCCCCCCCCCHHHHHHCCCCCC-------CEECCCCCCCCCCCCCCCHHHHCCCCCCEEEEECCCCC
Q ss_conf 1799614-510011211123641011111033343-------12126764322211122001101787411465215221
Q gi|254780307|r 89 CIVIDNS-SAWRYDSDVPLIVPEVNPQTISLASRK-------NIIANPNCSTIQLVVALKPLHDLAMIKRVVVTTYQSVS 160 (335)
Q Consensus 89 ~~VIDlS-~~~R~~~d~p~~lPein~~~i~~~~~~-------~~VanPgC~at~~~l~L~PL~~~~~i~~v~v~s~~g~S 160 (335)
..=|+|+ ++||.|++.|.++|-+-....+....+ .+.-.|+-+-.+..+.+.+=... +..=.+-+.|.+|
T Consensus 30 p~KvnL~igAYRtd~g~PWvLPvVk~~e~~i~~d~s~NHEYLpi~Gl~~F~~~A~el~lg~~s~a--~kE~Rv~~vQsls 107 (410)
T KOG1412 30 PVKVNLGIGAYRTDDGKPWVLPVVKKAEKKIANDQSLNHEYLPILGLPTFTKAATELLLGADSPA--IKEDRVFGVQSLS 107 (410)
T ss_pred CCEEECCCCEEECCCCCEEEEHHHHHHHHHCCCCHHCCCHHCCCCCCHHHHHHHHHHHCCCCCHH--HHHCCCCCEEECC
T ss_conf 50550221047748898667535543112036740105111331486356666587700788534--3322112024215
Q ss_pred CCCCC
Q ss_conf 12321
Q gi|254780307|r 161 GAGKK 165 (335)
Q Consensus 161 GaG~~ 165 (335)
|-|.-
T Consensus 108 GTGAl 112 (410)
T KOG1412 108 GTGAL 112 (410)
T ss_pred CCCHH
T ss_conf 65324
No 469
>PRK05599 hypothetical protein; Provisional
Probab=52.08 E-value=17 Score=16.27 Aligned_cols=33 Identities=21% Similarity=0.475 Sum_probs=25.3
Q ss_pred EEEEEECCCCHHHHHHHHHHHHCCCCEEEEEEEECCC
Q ss_conf 1799981667789999999974499807899997476
Q gi|254780307|r 3 FKVAVVGATGNVGREMLNIICERGFPISEVVALASER 39 (335)
Q Consensus 3 ~kvaIiGatG~vG~el~~lL~~~~~p~~~l~~~~s~~ 39 (335)
|.|-|.|||.=+|.++-+.|. +++ ++.+.+...
T Consensus 1 MtvlITGASsGIG~a~A~~lA-~G~---~vvl~~R~~ 33 (246)
T PRK05599 1 MSILILGGTSDIAGEIATLLA-HGE---DVVLAARRP 33 (246)
T ss_pred CEEEEECCCHHHHHHHHHHHH-CCC---CEEEEECCH
T ss_conf 989998886899999999998-599---499999999
No 470
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=51.47 E-value=8.5 Score=18.01 Aligned_cols=83 Identities=19% Similarity=0.292 Sum_probs=45.2
Q ss_pred EEECCCCHHHHHHHHHHHHCCCCEEEEEEEECCCCCC-----EEEECCCCEEEEE-EC--C--HHHHCCCCEEEECCCHH
Q ss_conf 9981667789999999974499807899997476587-----5600278158998-77--9--43631884786068758
Q gi|254780307|r 6 AVVGATGNVGREMLNIICERGFPISEVVALASERSAG-----TKVPFGKETIDVQ-DV--K--SYDFSDTDICLMSAGHA 75 (335)
Q Consensus 6 aIiGatG~vG~el~~lL~~~~~p~~~l~~~~s~~~~G-----~~i~~~~~~~~~~-~~--~--~~~~~~~Divf~a~p~~ 75 (335)
.|+|. |-.|....++|.+++. ++.......+.- +.+...+-...+- .. . ...+.++|+|+.+-+=.
T Consensus 4 ~V~Gl-G~sG~s~a~~L~~~G~---~v~~~D~~~~~~~~~~~~~L~~~gi~~~~g~~~~~~~~~~~~~~~d~vV~SPGI~ 79 (459)
T PRK02705 4 HVIGL-GRSGIAAARLLKAQGW---EVVVSERNDSPELLERQQELEQEGITVELGKPLELESFQPWLDQPDLVVVSPGIP 79 (459)
T ss_pred EEEEE-CHHHHHHHHHHHHCCC---EEEEEECCCCCCHHHHHHHHHHCCCEEEECCCCCCCCHHHHCCCCCEEEECCCCC
T ss_conf 99954-8999999999997899---5999989899234789999987598698167666430133116788899899649
Q ss_pred HHHHHHHHHCCCCEEEE
Q ss_conf 99999975045651799
Q gi|254780307|r 76 VSSQMSPKIAANGCIVI 92 (335)
Q Consensus 76 ~s~~~~~~~~~~g~~VI 92 (335)
...+...++.++|+.|+
T Consensus 80 ~~~p~~~~a~~~gi~i~ 96 (459)
T PRK02705 80 WDHPTLVELREKGIEVI 96 (459)
T ss_pred CCCHHHHHHHHCCCCEE
T ss_conf 98999999998799721
No 471
>COG0063 Predicted sugar kinase [Carbohydrate transport and metabolism]
Probab=51.24 E-value=17 Score=16.19 Aligned_cols=91 Identities=20% Similarity=0.311 Sum_probs=50.9
Q ss_pred EEEEECCC-CHHHHHHHHHHH-HCCCCEEEEEEEECCCCCCEEEECCCCEEEEEECCHHH-------HCCCCEEEEC--C
Q ss_conf 79998166-778999999997-44998078999974765875600278158998779436-------3188478606--8
Q gi|254780307|r 4 KVAVVGAT-GNVGREMLNIIC-ERGFPISEVVALASERSAGTKVPFGKETIDVQDVKSYD-------FSDTDICLMS--A 72 (335)
Q Consensus 4 kvaIiGat-G~vG~el~~lL~-~~~~p~~~l~~~~s~~~~G~~i~~~~~~~~~~~~~~~~-------~~~~Divf~a--~ 72 (335)
+|.|+|.+ +|+|--.+.-+. .+ --..++.+.++.++...+.....++.+....... ...+|.+.+. +
T Consensus 34 ~vliigG~~~y~GA~~laa~aAl~--~GaglV~v~~~~~~~~~~~s~~Pe~mv~~~~~~~~~~~~~~~~~~~avviGpGl 111 (284)
T COG0063 34 RVLIIGGSRGYTGAPVLAALAALR--AGAGLVSLASPPEAASALKSYLPELMVIEVEGKKLLEERELVERADAVVIGPGL 111 (284)
T ss_pred EEEEECCCCCCCCHHHHHHHHHHH--HCCCEEEEECCHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHCCCCEEEECCCC
T ss_conf 289986888889879999999998--489938996145566677635953067524550146777640468879978888
Q ss_pred CH-HHHHHHHHHHCCCC--EEEEECCC
Q ss_conf 75-89999997504565--17996145
Q gi|254780307|r 73 GH-AVSSQMSPKIAANG--CIVIDNSS 96 (335)
Q Consensus 73 p~-~~s~~~~~~~~~~g--~~VIDlS~ 96 (335)
+. ..+++...++.+.. ..|||.-+
T Consensus 112 G~~~~~~~~~~~~l~~~~~p~ViDADa 138 (284)
T COG0063 112 GRDAEGQEALKELLSSDLKPLVLDADA 138 (284)
T ss_pred CCCHHHHHHHHHHHHCCCCCEEEECCH
T ss_conf 988789999999972467888994717
No 472
>PRK00081 coaE dephospho-CoA kinase; Reviewed
Probab=51.11 E-value=17 Score=16.17 Aligned_cols=31 Identities=26% Similarity=0.514 Sum_probs=26.2
Q ss_pred CCEEEEEECCCCHHHHHHHHHHHHCCCCEEE
Q ss_conf 9617999816677899999999744998078
Q gi|254780307|r 1 MTFKVAVVGATGNVGREMLNIICERGFPISE 31 (335)
Q Consensus 1 M~~kvaIiGatG~vG~el~~lL~~~~~p~~~ 31 (335)
|-++|||.|.-|-.=..+.+.|.+.++|.++
T Consensus 1 ~m~~IgiTG~igsGKStv~~~l~~~G~~vid 31 (199)
T PRK00081 1 MMLIIGLTGGIGSGKSTVANIFAELGVPVID 31 (199)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHCCCCEEE
T ss_conf 9789995788877799999999988993996
No 473
>PRK05920 aromatic acid decarboxylase; Validated
Probab=50.89 E-value=17 Score=16.15 Aligned_cols=33 Identities=27% Similarity=0.399 Sum_probs=23.2
Q ss_pred EEEEECCCCH-HHHHHHHHHHHCCCCEEEEEEEECCC
Q ss_conf 7999816677-89999999974499807899997476
Q gi|254780307|r 4 KVAVVGATGN-VGREMLNIICERGFPISEVVALASER 39 (335)
Q Consensus 4 kvaIiGatG~-vG~el~~lL~~~~~p~~~l~~~~s~~ 39 (335)
=|||-||||. -|.++++.|.+.+ .++.++.|+.
T Consensus 8 vvgITGASG~~ya~rll~~L~~~~---~ev~lviS~~ 41 (205)
T PRK05920 8 VLAITGASGAIYGVRLLECLLAAD---YEVHLVISKA 41 (205)
T ss_pred EEEEECHHHHHHHHHHHHHHHHCC---CEEEEEECHH
T ss_conf 999865427999999999998679---9899998678
No 474
>PRK07411 hypothetical protein; Validated
Probab=50.75 E-value=17 Score=16.14 Aligned_cols=100 Identities=13% Similarity=0.149 Sum_probs=55.8
Q ss_pred EEEEEECCCCHHHHHHHHHHHHCCCCEEEEEE-------------EECCCCCCEEE--------ECCCCEEEEE----EC
Q ss_conf 17999816677899999999744998078999-------------97476587560--------0278158998----77
Q gi|254780307|r 3 FKVAVVGATGNVGREMLNIICERGFPISEVVA-------------LASERSAGTKV--------PFGKETIDVQ----DV 57 (335)
Q Consensus 3 ~kvaIiGatG~vG~el~~lL~~~~~p~~~l~~-------------~~s~~~~G~~i--------~~~~~~~~~~----~~ 57 (335)
-+|.|+|+ |-.|.-.+.-|..-+.-.+.|.- +.+....|+.- ..-...+.+. .+
T Consensus 39 a~VlvvG~-GGLG~p~~~yLaaaGvG~i~ivD~D~ve~sNL~RQ~l~~~~~vG~~K~~~a~~~l~~lnp~~~i~~~~~~l 117 (390)
T PRK07411 39 ASVLCIGT-GGLGSPLLLYLAAAGIGRIGIVDFDIVDSSNLQRQVIHGTSWVGKPKIESAKNRILEINPYCQVDLYETRL 117 (390)
T ss_pred CCEEEECC-CHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCHHCCCCCHHHHHHHHHHHHCCCCCCEEHHHHC
T ss_conf 97899888-72379999999983897599974899462347854366620079718999999999868986421034325
Q ss_pred CHH----HHCCCCEEEECCCHHHHHHHHHHH-CCCCEEEEECCCCHHCCCCC
Q ss_conf 943----631884786068758999999750-45651799614510011211
Q gi|254780307|r 58 KSY----DFSDTDICLMSAGHAVSSQMSPKI-AANGCIVIDNSSAWRYDSDV 104 (335)
Q Consensus 58 ~~~----~~~~~Divf~a~p~~~s~~~~~~~-~~~g~~VIDlS~~~R~~~d~ 104 (335)
++. -+.+.|+|+=|+.+-.++-.+..+ ...|+.+|..| .+|++-.+
T Consensus 118 ~~~na~~li~~~DvvvD~tDNf~tRylindac~~~~~PlV~ga-~~~~~Gqv 168 (390)
T PRK07411 118 SSENALDILAPYDVVVDGTDNFPTRYLVNDACVLLNKPNVYGS-IFRFEGQA 168 (390)
T ss_pred CHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHCCCEEEEE-CCCCEEEE
T ss_conf 5524887422886899678888999998999999699879976-47778999
No 475
>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional
Probab=50.68 E-value=17 Score=16.13 Aligned_cols=32 Identities=34% Similarity=0.516 Sum_probs=23.3
Q ss_pred CCEEEEEE-CCCCHHHHHHHHHHHHCCCCEEEEEEEE
Q ss_conf 96179998-1667789999999974499807899997
Q gi|254780307|r 1 MTFKVAVV-GATGNVGREMLNIICERGFPISEVVALA 36 (335)
Q Consensus 1 M~~kvaIi-GatG~vG~el~~lL~~~~~p~~~l~~~~ 36 (335)
|- |++|| |+++-+|+.+.+.|.+++. .+...+
T Consensus 1 mn-KvalITG~s~GIG~aia~~la~~Ga---~V~i~~ 33 (259)
T PRK12384 1 MN-KVAVVIGGGQTLGAFLCHGLAEEGY---RVAVAD 33 (259)
T ss_pred CC-CEEEEECCCCHHHHHHHHHHHHCCC---EEEEEE
T ss_conf 99-7899946886899999999998799---999997
No 476
>PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional
Probab=50.46 E-value=10 Score=17.58 Aligned_cols=139 Identities=17% Similarity=0.344 Sum_probs=70.8
Q ss_pred EEEEEECCCCHHHHHH-HHHHHHCCCCEEEEEEEECCCCCCEEEECCCCEEEEEECCHHHHCCCCEEEECCCHH--HHHH
Q ss_conf 1799981667789999-999974499807899997476587560027815899877943631884786068758--9999
Q gi|254780307|r 3 FKVAVVGATGNVGREM-LNIICERGFPISEVVALASERSAGTKVPFGKETIDVQDVKSYDFSDTDICLMSAGHA--VSSQ 79 (335)
Q Consensus 3 ~kvaIiGatG~vG~el-~~lL~~~~~p~~~l~~~~s~~~~G~~i~~~~~~~~~~~~~~~~~~~~Divf~a~p~~--~s~~ 79 (335)
|||+|.|| |. |+| ++.| +.|. .-|-..++++..+. -++.-.+-|+| +|-|+. .+.+
T Consensus 1 mkvsVyGa-GN--Q~LY~e~l---~~pe----------k~GGe~PyGGs~MA----iefA~AGHDVv-LaePn~~~lsee 59 (341)
T PRK12557 1 MKVTVYGA-GN--QRLYVNQL---NLPE----------KYGGEPPYGGSRMA----IEFAEAGHDVV-LAEPNKSMLSDE 59 (341)
T ss_pred CEEEEECC-CC--HHHHHHHH---CCHH----------HCCCCCCCCCHHHH----HHHHHCCCCEE-EECCCCCCCCHH
T ss_conf 93679747-64--44678770---8846----------40899998704999----99997578479-735762316989
Q ss_pred HHHHHCCCCEEEEECCCCHHCCCCC-----CCC--CCCHHHHHHCCCCCCCEECCCCCCCCCCCC--CCCHHHHCCCCCC
Q ss_conf 9975045651799614510011211-----123--641011111033343121267643222111--2200110178741
Q gi|254780307|r 80 MSPKIAANGCIVIDNSSAWRYDSDV-----PLI--VPEVNPQTISLASRKNIIANPNCSTIQLVV--ALKPLHDLAMIKR 150 (335)
Q Consensus 80 ~~~~~~~~g~~VIDlS~~~R~~~d~-----p~~--lPein~~~i~~~~~~~~VanPgC~at~~~l--~L~PL~~~~~i~~ 150 (335)
.|++..++|.+|+|.-..---...+ |.+ --+|-++-+....+.- |-++-|+.++..| .|.+..+. .-+.
T Consensus 60 ~w~~VEdAgVkvv~dD~eAakh~Ei~ilFTPFGk~T~~Iak~Il~hlpe~A-VIcnTCTvspvvLy~~Le~eLr~-kR~D 137 (341)
T PRK12557 60 QWKRVEDAGVKVVTDDAEAAKHAEIAVLFTPFGKKTVEIAKEILPHLPEGA-VICNTCTVSPVVLYYSLEVELRT-KRKD 137 (341)
T ss_pred HHHHHHHCCCEEECCCHHHHHCCEEEEEECCCCCHHHHHHHHHHHHCCCCC-EEECCCCCCHHHHHHHHHHHHHC-CHHH
T ss_conf 999999749667336166652675899964764067899998862187787-76166677599999999999830-1242
Q ss_pred EEEEECCCCCCCCC
Q ss_conf 14652152211232
Q gi|254780307|r 151 VVVTTYQSVSGAGK 164 (335)
Q Consensus 151 v~v~s~~g~SGaG~ 164 (335)
+-|++++++.--|-
T Consensus 138 vGisSmHPA~VPGT 151 (341)
T PRK12557 138 VGISSMHPAAVPGT 151 (341)
T ss_pred CCCCCCCCCCCCCC
T ss_conf 47335687789998
No 477
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=49.39 E-value=18 Score=16.01 Aligned_cols=84 Identities=14% Similarity=0.227 Sum_probs=44.9
Q ss_pred EEEEEECCCCHHHHHHHHHHHHCCCCEEEEEEEECCCCCCEEEECCCCEEEEEECCHHHHCCCCEEEECCCHHH-HH---
Q ss_conf 17999816677899999999744998078999974765875600278158998779436318847860687589-99---
Q gi|254780307|r 3 FKVAVVGATGNVGREMLNIICERGFPISEVVALASERSAGTKVPFGKETIDVQDVKSYDFSDTDICLMSAGHAV-SS--- 78 (335)
Q Consensus 3 ~kvaIiGatG~vG~el~~lL~~~~~p~~~l~~~~s~~~~G~~i~~~~~~~~~~~~~~~~~~~~Divf~a~p~~~-s~--- 78 (335)
.+++|+|. |-+|+++.+++. .|- .++.... +-......... .....++ ++-+..+|++.+.+|-.. ++
T Consensus 139 ktlGIiG~-G~IG~~vA~~~~--~fg-m~Vi~yD-P~~~~~~~~~~--gv~~~~l-~ell~~sD~IslH~Plt~eT~~li 210 (524)
T PRK13581 139 KTLGVIGL-GRIGSEVAKRAK--AFG-MKVIAYD-PYISPERAAQL--GVELVEL-DELLARADFITLHTPLTPETRNLI 210 (524)
T ss_pred CEEEEECC-CHHHHHHHHHHH--HCC-CEEEEEC-CCCCHHHHHHC--CCEEEEH-HHHHHHCCEEEECCCCCHHHHHHC
T ss_conf 88999776-757899999998--549-7478877-76446679871--9668608-997310889999367861554430
Q ss_pred --HHHHHHCCCCEEEEECC
Q ss_conf --99975045651799614
Q gi|254780307|r 79 --QMSPKIAANGCIVIDNS 95 (335)
Q Consensus 79 --~~~~~~~~~g~~VIDlS 95 (335)
+...+. +.|..+|-.|
T Consensus 211 ~~~~~~~M-K~ga~lIN~a 228 (524)
T PRK13581 211 GAEELAKM-KPGVRIINCA 228 (524)
T ss_pred CHHHHHHC-CCCCEEEECC
T ss_conf 79999606-8998699748
No 478
>PRK07479 consensus
Probab=49.36 E-value=18 Score=16.01 Aligned_cols=33 Identities=30% Similarity=0.437 Sum_probs=23.5
Q ss_pred CCE--EE-EEECCCCHHHHHHHHHHHHCCCCEEEEEEEE
Q ss_conf 961--79-9981667789999999974499807899997
Q gi|254780307|r 1 MTF--KV-AVVGATGNVGREMLNIICERGFPISEVVALA 36 (335)
Q Consensus 1 M~~--kv-aIiGatG~vG~el~~lL~~~~~p~~~l~~~~ 36 (335)
|++ |+ -|.|+++-+|+++.+.|.+++. ++...+
T Consensus 1 m~L~gK~alITGgs~GIG~a~a~~la~~G~---~V~i~~ 36 (252)
T PRK07479 1 MRLSGKVAIVTGAGSGFGEGIAKRFAREGA---KVVVAD 36 (252)
T ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHCCC---EEEEEE
T ss_conf 987998899938876899999999998799---999997
No 479
>PRK13748 putative mercuric reductase; Provisional
Probab=48.73 E-value=19 Score=15.95 Aligned_cols=22 Identities=27% Similarity=0.392 Sum_probs=9.2
Q ss_pred EEEEEECCCCHHHHHHHHHHHHC
Q ss_conf 17999816677899999999744
Q gi|254780307|r 3 FKVAVVGATGNVGREMLNIICER 25 (335)
Q Consensus 3 ~kvaIiGatG~vG~el~~lL~~~ 25 (335)
|.+.|||+ |-.|-.--....+.
T Consensus 99 yDliVIG~-GpaG~~AA~~Aa~~ 120 (561)
T PRK13748 99 LHVAVIGS-GGAAMAAALKAVEQ 120 (561)
T ss_pred CCEEEECC-CHHHHHHHHHHHHC
T ss_conf 76899895-88999999999978
No 480
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=47.71 E-value=19 Score=15.85 Aligned_cols=109 Identities=21% Similarity=0.319 Sum_probs=54.4
Q ss_pred EEEEEECCCCHHHHHHHHHHHHCCCCEEEEEEEECCCC-----CCEEEE---C---CCCEE---EEEECCHHH-H-CCCC
Q ss_conf 17999816677899999999744998078999974765-----875600---2---78158---998779436-3-1884
Q gi|254780307|r 3 FKVAVVGATGNVGREMLNIICERGFPISEVVALASERS-----AGTKVP---F---GKETI---DVQDVKSYD-F-SDTD 66 (335)
Q Consensus 3 ~kvaIiGatG~vG~el~~lL~~~~~p~~~l~~~~s~~~-----~G~~i~---~---~~~~~---~~~~~~~~~-~-~~~D 66 (335)
.+|+|-|. |-||+.+.+.|.+.+. .+..++.++- .|.... + .+... ..+.+++++ | .+||
T Consensus 24 ~~vaVqGf-GnVG~~~a~~l~~~Ga---kvvavsD~~G~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D 99 (217)
T cd05211 24 LTVAVQGL-GNVGWGLAKKLAEEGG---KVLAVSDPDGYIYDPGITTEELINYAVALGGSARVKVQDYFPGEAILGLDVD 99 (217)
T ss_pred CEEEEECC-CHHHHHHHHHHHHCCC---EEEEEECCCCEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 99999898-8999999999998599---8999985787177899986999999998189653666530598650036776
Q ss_pred EEEECC-CHHHHHHHHHHHCCCCEEEEECCCCHHCCCCCCCCCCCHHHHHHCCCCCCCEECCCC
Q ss_conf 786068-758999999750456517996145100112111236410111110333431212676
Q gi|254780307|r 67 ICLMSA-GHAVSSQMSPKIAANGCIVIDNSSAWRYDSDVPLIVPEVNPQTISLASRKNIIANPN 129 (335)
Q Consensus 67 ivf~a~-p~~~s~~~~~~~~~~g~~VIDlS~~~R~~~d~p~~lPein~~~i~~~~~~~~VanPg 129 (335)
+.+-|+ ++....+-++++. |++|==.+.- | +.++..+...+++++-.|+
T Consensus 100 IliPaAl~~~I~~~~a~~i~---ak~I~EgAN~------P-----~t~ea~~iL~~rgI~viPD 149 (217)
T cd05211 100 IFAPCALGNVIDLENAKKLK---AKVVAEGANN------P-----TTDEALRILHERGIVVAPD 149 (217)
T ss_pred EEEECCCCCCCCHHHHHHHC---CEEEECCCCC------C-----CCHHHHHHHHHCCCEEECH
T ss_conf 89642445887989998717---7289506789------9-----8978999999789989476
No 481
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=47.28 E-value=20 Score=15.81 Aligned_cols=93 Identities=17% Similarity=0.237 Sum_probs=53.2
Q ss_pred EEEEECCCCHHHHHHHHHH-HHCCCCEEEEEEEECCC-CCCEE----------------EECCC--CEE-EEE-ECCHHH
Q ss_conf 7999816677899999999-74499807899997476-58756----------------00278--158-998-779436
Q gi|254780307|r 4 KVAVVGATGNVGREMLNII-CERGFPISEVVALASER-SAGTK----------------VPFGK--ETI-DVQ-DVKSYD 61 (335)
Q Consensus 4 kvaIiGatG~vG~el~~lL-~~~~~p~~~l~~~~s~~-~~G~~----------------i~~~~--~~~-~~~-~~~~~~ 61 (335)
||+|+|| |.-|..+.++. ...++ ++.+..-+. ...+. +.... +.+ .+. ..+-.+
T Consensus 311 kv~ViGa-G~MG~gIA~~~a~~aG~---~V~l~D~~~e~l~~~~~~i~~~l~~~v~~g~~~~~~~~~~l~~i~~~~~~~~ 386 (706)
T PRK11154 311 KVGVLGG-GLMGGGIAYVTATKAGL---PVRIKDINPQGINHALKYSWDLLDKKVKRRHMTPAERDKQMALISGTTDYRG 386 (706)
T ss_pred EEEEECC-CCCCHHHHHHHHHHCCC---EEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCEEEECCHHH
T ss_conf 7999864-73238999999998698---7999979999999999988999999986189998999998622410044123
Q ss_pred HCCCCEEEECCCHHHHH--HHHH---HHCCCCEEEEECCCCHHC
Q ss_conf 31884786068758999--9997---504565179961451001
Q gi|254780307|r 62 FSDTDICLMSAGHAVSS--QMSP---KIAANGCIVIDNSSAWRY 100 (335)
Q Consensus 62 ~~~~Divf~a~p~~~s~--~~~~---~~~~~g~~VIDlS~~~R~ 100 (335)
+.++|+|+.|.+.+... ++.. .....++++-.++|.+..
T Consensus 387 ~~~~DlVIEAv~E~~~~K~~v~~~le~~~~~~aIlAtNTSsl~i 430 (706)
T PRK11154 387 FKHADLVIEAVFEDLALKQQMVADVEQNCAEHTIFASNTSSLPI 430 (706)
T ss_pred HCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCCH
T ss_conf 15688799971452888999999999647988589506767768
No 482
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=46.77 E-value=20 Score=15.76 Aligned_cols=17 Identities=12% Similarity=0.284 Sum_probs=10.2
Q ss_pred EEEEEECCCCHHHHHHHH
Q ss_conf 179998166778999999
Q gi|254780307|r 3 FKVAVVGATGNVGREMLN 20 (335)
Q Consensus 3 ~kvaIiGatG~vG~el~~ 20 (335)
|.+.|||+ |-.|..+-.
T Consensus 3 YDviVIGa-GpgG~~~a~ 19 (452)
T TIGR03452 3 YDLIIIGT-GSGNSIPDP 19 (452)
T ss_pred CCEEEECC-CHHHHHHHH
T ss_conf 76899998-689999999
No 483
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=46.65 E-value=20 Score=15.75 Aligned_cols=31 Identities=29% Similarity=0.379 Sum_probs=20.9
Q ss_pred EEEEEECCCCHHHHHHHHHHHHCCCCEEEEEEE
Q ss_conf 179998166778999999997449980789999
Q gi|254780307|r 3 FKVAVVGATGNVGREMLNIICERGFPISEVVAL 35 (335)
Q Consensus 3 ~kvaIiGatG~vG~el~~lL~~~~~p~~~l~~~ 35 (335)
-.|+|||+ ||+|.-.-..|.++ .|..++..+
T Consensus 25 aDVvIIGg-G~tGLstA~~L~~~-~pg~~VvvL 55 (460)
T TIGR03329 25 ADVCIVGG-GFTGLWTAIMIKQQ-RPALDVLVL 55 (460)
T ss_pred EEEEEECC-CHHHHHHHHHHHHH-CCCCCEEEE
T ss_conf 51999994-39999999999974-899988999
No 484
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=46.29 E-value=16 Score=16.37 Aligned_cols=27 Identities=22% Similarity=0.335 Sum_probs=11.8
Q ss_pred EECCCCCCCCCCCCCCCHHHHCCCCCCEEEE
Q ss_conf 2126764322211122001101787411465
Q gi|254780307|r 124 IIANPNCSTIQLVVALKPLHDLAMIKRVVVT 154 (335)
Q Consensus 124 ~VanPgC~at~~~l~L~PL~~~~~i~~v~v~ 154 (335)
+|...|-.+.+.+.+ |.+.+ ..+|.|.
T Consensus 130 lilGAGGAarAv~~a---L~~~g-~~~i~V~ 156 (283)
T COG0169 130 LILGAGGAARAVAFA---LAEAG-AKRITVV 156 (283)
T ss_pred EEECCCHHHHHHHHH---HHHCC-CCEEEEE
T ss_conf 998976899999999---99869-9879999
No 485
>PRK08017 short chain dehydrogenase; Provisional
Probab=45.83 E-value=21 Score=15.67 Aligned_cols=28 Identities=25% Similarity=0.396 Sum_probs=23.7
Q ss_pred CCEEEEEECCCCHHHHHHHHHHHHCCCC
Q ss_conf 9617999816677899999999744998
Q gi|254780307|r 1 MTFKVAVVGATGNVGREMLNIICERGFP 28 (335)
Q Consensus 1 M~~kvaIiGatG~vG~el~~lL~~~~~p 28 (335)
|+-.|-|.|||+=+|+++.+.|.++++.
T Consensus 1 M~K~vlITGassGIG~a~A~~la~~G~~ 28 (256)
T PRK08017 1 MQKSVLITGCSSGIGLESALELKRQGFR 28 (256)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCE
T ss_conf 9978999658768999999999987999
No 486
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=45.70 E-value=21 Score=15.66 Aligned_cols=31 Identities=26% Similarity=0.462 Sum_probs=21.4
Q ss_pred EEEEEECCCCHHHHHHHHHHHHCCCCEEEEEEEECC
Q ss_conf 179998166778999999997449980789999747
Q gi|254780307|r 3 FKVAVVGATGNVGREMLNIICERGFPISEVVALASE 38 (335)
Q Consensus 3 ~kvaIiGatG~vG~el~~lL~~~~~p~~~l~~~~s~ 38 (335)
+||||||+ |..|.---=+|..| .++.++-..
T Consensus 9 ~~IAVIGs-GisGLSAA~~Ls~r----hdVTLfEA~ 39 (447)
T COG2907 9 RKIAVIGS-GISGLSAAWLLSRR----HDVTLFEAD 39 (447)
T ss_pred CCEEEECC-CCHHHHHHHHHHCC----CCEEEEECC
T ss_conf 61689725-62014457753235----524788606
No 487
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=45.56 E-value=21 Score=15.65 Aligned_cols=62 Identities=27% Similarity=0.418 Sum_probs=35.9
Q ss_pred EEEEEECCCCHHHHHHHHHHHHCCCCEEEEEEEECCCCCCEEEECCCCEEEEEECCHHHHCCCCEEEECCCHHHHHHHH-
Q ss_conf 1799981667789999999974499807899997476587560027815899877943631884786068758999999-
Q gi|254780307|r 3 FKVAVVGATGNVGREMLNIICERGFPISEVVALASERSAGTKVPFGKETIDVQDVKSYDFSDTDICLMSAGHAVSSQMS- 81 (335)
Q Consensus 3 ~kvaIiGatG~vG~el~~lL~~~~~p~~~l~~~~s~~~~G~~i~~~~~~~~~~~~~~~~~~~~Divf~a~p~~~s~~~~- 81 (335)
.++.++|+ |-+|.-+-.+|.... .-++....+ |+++.|++.+.-..-.
T Consensus 24 ~~v~v~G~-G~vg~~ia~ll~~~~--~k~V~~~d~----------------------------Di~v~~t~~~~~~~~~~ 72 (86)
T cd05191 24 KTVVVLGA-GEVGKGIAKLLADEG--GKKVVLCDR----------------------------DILVTATPAGVPVLEEA 72 (86)
T ss_pred CEEEEECC-CCHHHHHHHHHHHHC--CCEEEECCC----------------------------CEEEECCCCCCCCHHHH
T ss_conf 58999778-604289999999817--970787155----------------------------52886057787127877
Q ss_pred HHHCCCCEEEEECC
Q ss_conf 75045651799614
Q gi|254780307|r 82 PKIAANGCIVIDNS 95 (335)
Q Consensus 82 ~~~~~~g~~VIDlS 95 (335)
......+..|+|++
T Consensus 73 ~~~~~~~~vv~~~a 86 (86)
T cd05191 73 TAKINEGAVVIDLA 86 (86)
T ss_pred HHHCCCCCEEEECC
T ss_conf 64216871888539
No 488
>PRK09134 short chain dehydrogenase; Provisional
Probab=45.55 E-value=21 Score=15.64 Aligned_cols=24 Identities=33% Similarity=0.635 Sum_probs=20.1
Q ss_pred EEEEE-CCCCHHHHHHHHHHHHCCC
Q ss_conf 79998-1667789999999974499
Q gi|254780307|r 4 KVAVV-GATGNVGREMLNIICERGF 27 (335)
Q Consensus 4 kvaIi-GatG~vG~el~~lL~~~~~ 27 (335)
|+++| |+++-+|+.+.+.|.++++
T Consensus 10 KvalVTGas~GIG~aiA~~la~~Ga 34 (256)
T PRK09134 10 RAALVTGAARRIGRAIALDLAAHGF 34 (256)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCC
T ss_conf 9799948867899999999998799
No 489
>PRK12742 oxidoreductase; Provisional
Probab=45.33 E-value=21 Score=15.62 Aligned_cols=24 Identities=21% Similarity=0.441 Sum_probs=19.8
Q ss_pred EEEEECCCCHHHHHHHHHHHHCCC
Q ss_conf 799981667789999999974499
Q gi|254780307|r 4 KVAVVGATGNVGREMLNIICERGF 27 (335)
Q Consensus 4 kvaIiGatG~vG~el~~lL~~~~~ 27 (335)
++-|.|+++-+|+.+.+.|.+++.
T Consensus 8 ~alITGas~GIG~aia~~la~~Ga 31 (237)
T PRK12742 8 SVLVLGGSRGIGAAIVRRFVTDGA 31 (237)
T ss_pred EEEEECCCCHHHHHHHHHHHHCCC
T ss_conf 899927887999999999998799
No 490
>PRK07060 short chain dehydrogenase; Provisional
Probab=45.31 E-value=21 Score=15.62 Aligned_cols=29 Identities=41% Similarity=0.567 Sum_probs=21.6
Q ss_pred EEEECCCCHHHHHHHHHHHHCCCCEEEEEEEE
Q ss_conf 99981667789999999974499807899997
Q gi|254780307|r 5 VAVVGATGNVGREMLNIICERGFPISEVVALA 36 (335)
Q Consensus 5 vaIiGatG~vG~el~~lL~~~~~p~~~l~~~~ 36 (335)
+-|-|+++-+|+++.+.|.+.+. ++...+
T Consensus 12 ~lVTG~~~GIG~aia~~la~~Ga---~V~~~~ 40 (245)
T PRK07060 12 VLVTGASSGIGRACAVALAARGA---RVVAAA 40 (245)
T ss_pred EEEECCCCHHHHHHHHHHHHCCC---EEEEEE
T ss_conf 99947776899999999998799---999997
No 491
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=45.03 E-value=21 Score=15.60 Aligned_cols=12 Identities=33% Similarity=0.523 Sum_probs=4.7
Q ss_pred CCCCCEEEECCC
Q ss_conf 765875600278
Q gi|254780307|r 38 ERSAGTKVPFGK 49 (335)
Q Consensus 38 ~~~~G~~i~~~~ 49 (335)
++.+|..-.|.+
T Consensus 36 E~gAG~~agfsD 47 (510)
T PRK09424 36 ESGAGQLASFDD 47 (510)
T ss_pred ECCCCCCCCCCH
T ss_conf 789883479898
No 492
>PRK06953 short chain dehydrogenase; Provisional
Probab=44.67 E-value=22 Score=15.56 Aligned_cols=26 Identities=31% Similarity=0.552 Sum_probs=21.5
Q ss_pred CCEEEEEECCCCHHHHHHHHHHHHCCC
Q ss_conf 961799981667789999999974499
Q gi|254780307|r 1 MTFKVAVVGATGNVGREMLNIICERGF 27 (335)
Q Consensus 1 M~~kvaIiGatG~vG~el~~lL~~~~~ 27 (335)
|| .+-|.|++.=+|+++.+.|.++++
T Consensus 1 MK-~~LVTGas~GIG~a~a~~la~~G~ 26 (222)
T PRK06953 1 MK-TVLIVGASRGIGLEFVRQYRADGW 26 (222)
T ss_pred CC-EEEECCCCHHHHHHHHHHHHHCCC
T ss_conf 99-999947572999999999998889
No 493
>COG4091 Predicted homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=44.44 E-value=22 Score=15.54 Aligned_cols=87 Identities=21% Similarity=0.361 Sum_probs=0.0
Q ss_pred EEEEEECCCCHHHHHHHHHHHHCCCCEEEEEEEECCCCCCEEEEC------------------------CCCEEEEEECC
Q ss_conf 179998166778999999997449980789999747658756002------------------------78158998779
Q gi|254780307|r 3 FKVAVVGATGNVGREMLNIICERGFPISEVVALASERSAGTKVPF------------------------GKETIDVQDVK 58 (335)
Q Consensus 3 ~kvaIiGatG~vG~el~~lL~~~~~p~~~l~~~~s~~~~G~~i~~------------------------~~~~~~~~~~~ 58 (335)
+||++||| |.-|+-++.....- |-+++..++..+-.+.+-.+ .++-..-.|.+
T Consensus 18 iRVGlIGA-G~mG~~ivtQi~~m--~Gm~vvaisd~~~~~ak~A~~~ag~~~~~~~e~~~~s~~a~Ai~aGKi~vT~D~~ 94 (438)
T COG4091 18 IRVGLIGA-GEMGTGIVTQIASM--PGMEVVAISDRNLDAAKRAYDRAGGPKIEAVEADDASKMADAIEAGKIAVTDDAE 94 (438)
T ss_pred EEEEEECC-CCCCHHHHHHHHHC--CCCEEEEEECCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCEEEECCHH
T ss_conf 59987545-41106799987506--8836999842464278899987358720000111166788998628679826535
Q ss_pred HHHHCC-CCEEEECCC-HHHHHHHHHHHCCCCEEEE
Q ss_conf 436318-847860687-5899999975045651799
Q gi|254780307|r 59 SYDFSD-TDICLMSAG-HAVSSQMSPKIAANGCIVI 92 (335)
Q Consensus 59 ~~~~~~-~Divf~a~p-~~~s~~~~~~~~~~g~~VI 92 (335)
..--.+ +|+++-|++ .++.+++.-.....++.+|
T Consensus 95 ~i~~~~~IdvIIdATG~p~vGA~~~l~Ai~h~KHlV 130 (438)
T COG4091 95 LIIANDLIDVIIDATGVPEVGAKIALEAILHGKHLV 130 (438)
T ss_pred HHHCCCCCEEEEECCCCCCHHHHHHHHHHHCCCEEE
T ss_conf 432388604999767885301475799985677289
No 494
>pfam10100 DUF2338 Uncharacterized protein conserved in bacteria (DUF2338). Members of this family of hypothetical bacterial proteins have no known function.
Probab=44.07 E-value=22 Score=15.51 Aligned_cols=142 Identities=10% Similarity=0.131 Sum_probs=0.0
Q ss_pred EEEEECCCCHHHHHHHHHHHHCCCCEEEEEEEECCCCCCEEEE---------------CCCCEEEEE------------E
Q ss_conf 7999816677899999999744998078999974765875600---------------278158998------------7
Q gi|254780307|r 4 KVAVVGATGNVGREMLNIICERGFPISEVVALASERSAGTKVP---------------FGKETIDVQ------------D 56 (335)
Q Consensus 4 kvaIiGatG~vG~el~~lL~~~~~p~~~l~~~~s~~~~G~~i~---------------~~~~~~~~~------------~ 56 (335)
||+|.|-.+.-++.+.+-|..+ ..+...+..+..-+..+ .++.+..+. .
T Consensus 27 ~vgi~~R~S~rs~~f~e~l~~~----~~~~~~~vqn~~h~~~~G~~~id~~~~~~~~i~g~WdtlILavtaDaY~~VL~q 102 (429)
T pfam10100 27 RLGIAGRPSTRSKRLFEALART----DTLFLVGTQNEQHQQLEGKCTIDCFIKDYATIVGDWDTLILAVTADAYYDVLQQ 102 (429)
T ss_pred EEEEECCCCHHHHHHHHHHHHC----CCEEEEEHHHHHHHHHCCCEEHHHHHCCHHHHCCCCCEEEEEEEHHHHHHHHHC
T ss_conf 5545327535579999999737----767986102245676447156245413798851513379999521878999970
Q ss_pred CCHHHHCCCCEEEECCCHHHHHHHHHHHCCC---CEEEEECC---CCHHCCCCCCCCCCCHHHHHHCCCCCCCEECCCCC
Q ss_conf 7943631884786068758999999750456---51799614---51001121112364101111103334312126764
Q gi|254780307|r 57 VKSYDFSDTDICLMSAGHAVSSQMSPKIAAN---GCIVIDNS---SAWRYDSDVPLIVPEVNPQTISLASRKNIIANPNC 130 (335)
Q Consensus 57 ~~~~~~~~~Divf~a~p~~~s~~~~~~~~~~---g~~VIDlS---~~~R~~~d~p~~lPein~~~i~~~~~~~~VanPgC 130 (335)
++...+.+++-+++--|.--|.-+++.+.++ ..-||++| +|-|+-++ +-..+.+..+-++++.-.-.-
T Consensus 103 i~~~~L~~vk~iILvSPt~GS~~lv~~~l~~~~~~~eVISfStY~gdTr~~d~------~~~~~vlTtavKkkiYlgSt~ 176 (429)
T pfam10100 103 IPWETLKRVKCVILISPTFGSNLLVQNFLNALNKDAEVISFSTYYGDTRWIDD------EQPNRVLTTAVKKKLYLGSTH 176 (429)
T ss_pred CCHHHHHCCCEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEECC------CCCCHHHHHHHHCEEEECCCC
T ss_conf 79988704777999766644079999999855998169985300364310067------887357887642207854799
Q ss_pred CCCCCCCCCCHHHHCCCCCCEEEEE
Q ss_conf 3222111220011017874114652
Q gi|254780307|r 131 STIQLVVALKPLHDLAMIKRVVVTT 155 (335)
Q Consensus 131 ~at~~~l~L~PL~~~~~i~~v~v~s 155 (335)
..+..+.-|.-+++..+|+-+.+++
T Consensus 177 ~~S~~~~~l~~~~~~~~I~~~~~~~ 201 (429)
T pfam10100 177 SGSAELSRLCAVFAQLGIELTPMES 201 (429)
T ss_pred CCCHHHHHHHHHHHHCCCEEEEECC
T ss_conf 9967899999999875930698178
No 495
>PRK10279 hypothetical protein; Provisional
Probab=44.06 E-value=22 Score=15.50 Aligned_cols=33 Identities=24% Similarity=0.334 Sum_probs=0.0
Q ss_pred CC-EEEEEE----CCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 96-179998----1667789999999974499807899
Q gi|254780307|r 1 MT-FKVAVV----GATGNVGREMLNIICERGFPISEVV 33 (335)
Q Consensus 1 M~-~kvaIi----GatG~vG~el~~lL~~~~~p~~~l~ 33 (335)
|+ +||+++ ||.|+.=--.++.|+++++|..-+.
T Consensus 1 ~~~~kigLvLsGGgarG~AHiGvl~aLee~gI~id~I~ 38 (300)
T PRK10279 1 MRKIKIGLALGSGAARGWSHIGVINALKKVGIEIDIVA 38 (300)
T ss_pred CCCCEEEEEECCHHHHHHHHHHHHHHHHHCCCCCCEEE
T ss_conf 99972999958679999999999999998699977898
No 496
>TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2; InterPro: IPR011179 This group represents the bacterial and archaeal isopentenyl-diphosphate delta-isomerase (IPP isomerase). IPP isomerase catalyses the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), and is a key enzyme in the biosynthesis of isoprenoids via the mevalonate pathway. The bacterial and archaeal IPP isomerase (type 2 enzyme) differs from that found in eukaryotes (type 1 enzyme), and requires NADPH, magnesium, and FMN for activity , .; GO: 0004452 isopentenyl-diphosphate delta-isomerase activity, 0010181 FMN binding, 0008299 isoprenoid biosynthetic process, 0005737 cytoplasm.
Probab=43.45 E-value=10 Score=17.60 Aligned_cols=26 Identities=31% Similarity=0.448 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf 87589999997504565179961451
Q gi|254780307|r 72 AGHAVSSQMSPKIAANGCIVIDNSSA 97 (335)
Q Consensus 72 ~p~~~s~~~~~~~~~~g~~VIDlS~~ 97 (335)
+|.|.|++.+++|.+.|+.-||.|+.
T Consensus 196 vG~G~S~e~a~~L~~~Gv~aiDv~G~ 221 (349)
T TIGR02151 196 VGFGISKEVAKLLADAGVKAIDVSGA 221 (349)
T ss_pred CCCCCCHHHHHHHHHCCEEEEEECCC
T ss_conf 15799889999998789008870787
No 497
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=43.26 E-value=23 Score=15.43 Aligned_cols=90 Identities=12% Similarity=0.202 Sum_probs=0.0
Q ss_pred CCEE---EEEECCCCHHHHHHHHHHHHCCCCEEEEEEEECCCCCCEEEECCCCEEEEEECCHHHHCCCCEEEECCCHHHH
Q ss_conf 9617---9998166778999999997449980789999747658756002781589987794363188478606875899
Q gi|254780307|r 1 MTFK---VAVVGATGNVGREMLNIICERGFPISEVVALASERSAGTKVPFGKETIDVQDVKSYDFSDTDICLMSAGHAVS 77 (335)
Q Consensus 1 M~~k---vaIiGatG~vG~el~~lL~~~~~p~~~l~~~~s~~~~G~~i~~~~~~~~~~~~~~~~~~~~Divf~a~p~~~s 77 (335)
|.++ +-|.|+++-.|.++.+.|.++ ++++++.+......
T Consensus 1 m~L~~Kv~lITGgs~GIG~a~a~~la~~--------------------------------------G~~V~~~~r~~~~l 42 (246)
T PRK05653 1 MSLQGKTALVTGASRGIGRAIALRLAAD--------------------------------------GARVVIYDSNEEAA 42 (246)
T ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHC--------------------------------------CCEEEEEECCHHHH
T ss_conf 9989988999389758999999999987--------------------------------------99999997999999
Q ss_pred HHHHHHHCCCCEEEEECCCCHHCCCCCCCCCCCHHHHHHCCCCCCCEECCCCCC
Q ss_conf 999975045651799614510011211123641011111033343121267643
Q gi|254780307|r 78 SQMSPKIAANGCIVIDNSSAWRYDSDVPLIVPEVNPQTISLASRKNIIANPNCS 131 (335)
Q Consensus 78 ~~~~~~~~~~g~~VIDlS~~~R~~~d~p~~lPein~~~i~~~~~~~~VanPgC~ 131 (335)
.+..+.+.+.|..+.-...|.+-.+++--.+.++..+.-..-- +|.|.|.+
T Consensus 43 ~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~iDi---lvnnAg~~ 93 (246)
T PRK05653 43 EALAEELRAAGGEAALLVFDVTDEAAVRALIEAAVERFGGLDV---LVNNAGIT 93 (246)
T ss_pred HHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHCCCCCE---EEECCCCC
T ss_conf 9999999965994899997289999999999999997499869---99899999
No 498
>pfam00208 ELFV_dehydrog Glutamate/Leucine/Phenylalanine/Valine dehydrogenase.
Probab=43.12 E-value=23 Score=15.42 Aligned_cols=113 Identities=20% Similarity=0.247 Sum_probs=0.0
Q ss_pred EEEEECCCCHHHHHHHHHHHHCCCCEEEEEEEEC--------------------CCCCCEEEECCCCEEEEEECCHHHHC
Q ss_conf 7999816677899999999744998078999974--------------------76587560027815899877943631
Q gi|254780307|r 4 KVAVVGATGNVGREMLNIICERGFPISEVVALAS--------------------ERSAGTKVPFGKETIDVQDVKSYDFS 63 (335)
Q Consensus 4 kvaIiGatG~vG~el~~lL~~~~~p~~~l~~~~s--------------------~~~~G~~i~~~~~~~~~~~~~~~~~~ 63 (335)
+|+|-|. |-||+...+.|.+.+ ..+..++. .+..+....+........+-++.-..
T Consensus 34 ~v~IqGf-GnVG~~~a~~l~~~G---akvvavsD~~G~i~~~~Gldi~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 109 (237)
T pfam00208 34 TVAVQGF-GNVGSYAAEKLLELG---AKVVAVSDSSGYIYDPNGIDIEELLELKEEGGGRVVEYAGSGAEYISGEELWEI 109 (237)
T ss_pred EEEEECC-CHHHHHHHHHHHHCC---CEEEEEECCCCEEECCCCCCHHHHHHHHHHHCCEEECCCCCCCEECCCCCCCCC
T ss_conf 9999898-899999999999879---969999828767999999999999999997198431246657534487100047
Q ss_pred CCCEEEECC-CHHHHHHHHHHHCCCCEEEEECCCCHHCCCCCCCCCCCHHHHHHCCCCCCCEECCCCCCCCC
Q ss_conf 884786068-75899999975045651799614510011211123641011111033343121267643222
Q gi|254780307|r 64 DTDICLMSA-GHAVSSQMSPKIAANGCIVIDNSSAWRYDSDVPLIVPEVNPQTISLASRKNIIANPNCSTIQ 134 (335)
Q Consensus 64 ~~Divf~a~-p~~~s~~~~~~~~~~g~~VIDlS~~~R~~~d~p~~lPein~~~i~~~~~~~~VanPgC~at~ 134 (335)
+|||.+-|+ ++....+-++++ +|++|==.+.--..+ +..+...+++++-.|+=.+.+
T Consensus 110 ~~DIliPaA~~~~I~~~na~~i---~ak~I~EgAN~p~t~-----------eA~~~L~~rgI~viPD~laNA 167 (237)
T pfam00208 110 DCDILVPCATQNEINEENAKLI---KAKAVVEGANMPTTP-----------EADEILEERGILYAPDKAANA 167 (237)
T ss_pred CCCEEEECCCCCCCCHHHHHHC---CCCEEEECCCCCCCH-----------HHHHHHHHCCCEEECHHHHCC
T ss_conf 6668864455688998999862---754897537898897-----------899999988998968077528
No 499
>PRK12938 acetyacetyl-CoA reductase; Provisional
Probab=42.80 E-value=23 Score=15.39 Aligned_cols=30 Identities=27% Similarity=0.597 Sum_probs=0.0
Q ss_pred CCEEEEEE-CCCCHHHHHHHHHHHHCCCCEE
Q ss_conf 96179998-1667789999999974499807
Q gi|254780307|r 1 MTFKVAVV-GATGNVGREMLNIICERGFPIS 30 (335)
Q Consensus 1 M~~kvaIi-GatG~vG~el~~lL~~~~~p~~ 30 (335)
|+=|+++| |+++=.|.++.+.|.+++...+
T Consensus 1 L~~KvalVTGgs~GIG~aia~~la~~Ga~Vv 31 (246)
T PRK12938 1 MSQRIAYVTGGMGGIGTSICQRLHKDGFKVV 31 (246)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCEEE
T ss_conf 9509899918586999999999998799899
No 500
>PRK06171 sorbitol-6-phosphate 2-dehydrogenase; Provisional
Probab=42.79 E-value=23 Score=15.38 Aligned_cols=70 Identities=16% Similarity=0.256 Sum_probs=0.0
Q ss_pred EEEEE-CCCCHHHHHHHHHHHHCCCCEEEEEEEECCCCCCEEEECCCCEEEEEECCH------HHHCCCCEEEECCC
Q ss_conf 79998-166778999999997449980789999747658756002781589987794------36318847860687
Q gi|254780307|r 4 KVAVV-GATGNVGREMLNIICERGFPISEVVALASERSAGTKVPFGKETIDVQDVKS------YDFSDTDICLMSAG 73 (335)
Q Consensus 4 kvaIi-GatG~vG~el~~lL~~~~~p~~~l~~~~s~~~~G~~i~~~~~~~~~~~~~~------~~~~~~Divf~a~p 73 (335)
|++|| |+++=+|+.+.+.|.+++...+-.-.-.+....++...+...-..-++++. ..|-++|+++-.++
T Consensus 10 KvalVTGgs~GIG~aia~~la~~Ga~V~~~d~~~~~~~~~~~~~~~~Dvt~~~~v~~~v~~~~~~~G~iDiLVNNAG 86 (266)
T PRK06171 10 KIIIVTGGSSGIGLAIVEELLAQGANVQMVDIHGGDEKHKGYQFWPTDISSAKEVNHTVAEIIERFGRIDGLVNNAG 86 (266)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEECCC
T ss_conf 97999477878999999999987999999978853505897699981699999999999999998399889998886
Done!