HHsearch alignment for GI: 254780307 and conserved domain: pfam01113
>pfam01113 DapB_N Dihydrodipicolinate reductase, N-terminus. Dihydrodipicolinate reductase (DapB) reduces the alpha,beta-unsaturated cyclic imine, dihydro-dipicolinate. This reaction is the second committed step in the biosynthesis of L-lysine and its precursor meso-diaminopimelate, which are critical for both protein and cell wall biosynthesis. The N-terminal domain of DapB binds the dinucleotide NADPH.
Probab=97.69 E-value=0.00036 Score=44.56 Aligned_cols=92 Identities=26% Similarity=0.315 Sum_probs=61.8
Q ss_pred EEEEEECCCCHHHHHHHHHHHHCCCCEEEEEEEECCCC---CCEEEEC--CCCEEEEEECCHHHHCCCCEEEECCCHHHH
Q ss_conf 17999816677899999999744998078999974765---8756002--781589987794363188478606875899
Q gi|254780307|r 3 FKVAVVGATGNVGREMLNIICERGFPISEVVALASERS---AGTKVPF--GKETIDVQDVKSYDFSDTDICLMSAGHAVS 77 (335)
Q Consensus 3 ~kvaIiGatG~vG~el~~lL~~~~~p~~~l~~~~s~~~---~G~~i~~--~~~~~~~~~~~~~~~~~~Divf~a~p~~~s 77 (335)
T Consensus 1 ikV~i~Ga~GrMG~~i~~~i~~~--~~~~lv~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~DVvIDFS~p~~~ 78 (122)
T pfam01113 1 IKVAVVGASGRMGRELIKAILEA--PDFELVAAVDRPGSSLLGSDAGELAGPLGVPVTDDLEEVLADADVLIDFTTPEAT 78 (122)
T ss_pred CEEEEECCCCHHHHHHHHHHHHC--CCCEEEEEEECCCCCCCCCCCCCCCCCCCCEECCCHHHHCCCCCEEEEECCHHHH
T ss_conf 98999889887899999999858--9968999994389612254310014678711124477751578889990687899
Q ss_pred HHHHHHHCCCCEEEEECCC
Q ss_conf 9999750456517996145
Q gi|254780307|r 78 SQMSPKIAANGCIVIDNSS 96 (335)
Q Consensus 78 ~~~~~~~~~~g~~VIDlS~ 96 (335)
T Consensus 79 ~~~~~~~~~~~~~~ViGTT 97 (122)
T pfam01113 79 LENLELALKHGKPLVIGTT 97 (122)
T ss_pred HHHHHHHHHCCCCEEEECC
T ss_conf 9999999967998899899