HHsearch alignment for GI: 254780307 and conserved domain: pfam05368
>pfam05368 NmrA NmrA-like family. NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.
Probab=97.70 E-value=0.00021 Score=45.96 Aligned_cols=89 Identities=19% Similarity=0.276 Sum_probs=53.8
Q ss_pred EEEECCCCHHHHHHHHHHHHCCCCEEEEEEEECC-CC-CCEEEECCCCEEEEEECCHH-----HHCCCCEEEECCCHHH-
Q ss_conf 9998166778999999997449980789999747-65-87560027815899877943-----6318847860687589-
Q gi|254780307|r 5 VAVVGATGNVGREMLNIICERGFPISEVVALASE-RS-AGTKVPFGKETIDVQDVKSY-----DFSDTDICLMSAGHAV- 76 (335)
Q Consensus 5 vaIiGatG~vG~el~~lL~~~~~p~~~l~~~~s~-~~-~G~~i~~~~~~~~~~~~~~~-----~~~~~Divf~a~p~~~- 76 (335)
T Consensus 1 IlV~GatG~iG~~vv~~L~~~g~~---Vr~l~R~~~~~~~~~l~~~gve~v~gD~~d~~sl~~al~gvd~v~~~~~~~~~ 77 (232)
T pfam05368 1 ILVFGATGYQGGSVVRASLKAGHP---VRALVRDPKSELAKSLKAAGVELVEGDLDDHESLVEALKGVDVVFSVTGFWLS 77 (232)
T ss_pred EEEECCCHHHHHHHHHHHHHCCCC---EEEEECCCCHHHHHHHHHCCCEEEEECCCCHHHHHHHHCCCCEEEEECCCCCC
T ss_conf 099896828999999999858993---89997187366566664179889990688878999996799889991588741
Q ss_pred -----HHHHHHHHCCCCEEEEECCC
Q ss_conf -----99999750456517996145
Q gi|254780307|r 77 -----SSQMSPKIAANGCIVIDNSS 96 (335)
Q Consensus 77 -----s~~~~~~~~~~g~~VIDlS~ 96 (335)
T Consensus 78 ~~~~~~~~~~~AA~~aGVk~~V~ss 102 (232)
T pfam05368 78 KEIEDGKKLADAAKEAGVKHFIPSE 102 (232)
T ss_pred HHHHHHHHHHHHHHHCCCCCEEEEE
T ss_conf 7799999999999973998345555