HHsearch alignment for GI: 254780308 and conserved domain: cd00254
>cd00254 LT_GEWL Lytic Transglycosylase (LT) and Goose Egg White Lysozyme (GEWL) domain. Members include the soluble and insoluble membrane-bound LTs in bacteria, the LTs in bacteriophage lambda, as well as, the eukaryotic "goose-type" lysozymes (GEWL). LTs catalyze the cleavage of the beta-1,4-glycosidic bond between N-acetylmuramic acid (MurNAc) and N-acetyl-D-glucosamine (GlcNAc), as do "goose-type" lysozymes. However, in addition to this, they also make a new glycosidic bond with the C6 hydroxyl group of the same muramic acid residue.
Probab=99.19 E-value=3.7e-11 Score=88.06 Aligned_cols=88 Identities=27% Similarity=0.435 Sum_probs=70.6
Q ss_pred HHHHHHHHHCCCCCHHHCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCHHCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 88944523100221010256418999987532753156654789999998643877700036752357866655224442
Q gi|254780308|r 129 PGILMALWGLETHFGETMGKTPLLSTLATLAYDCRRAKFFTEQFFYALDLVKKGVISSHALGATFGEIGQFQFLPVNVVK 208 (288)
Q Consensus 129 ~~ii~AiwGiET~yG~~~G~~~vl~aLaTLA~d~RR~~ff~~el~a~l~~~~~g~~~~~~~GS~aGa~G~~QFmPs~~~~ 208 (288)
T Consensus 1 p~ll~ai~~~ES~~~~~a~~------------------------------------------s~~~a~GlmQi~~~t~~~ 38 (113)
T cd00254 1 PALLLAIIRQESGFNPNAVN------------------------------------------SGAGAVGLMQFMPSTARA 38 (113)
T ss_pred CHHHHHHHHHHCCCCCCCCC------------------------------------------CCCCCCCCCCCCHHHHHH
T ss_conf 99999999985599989866------------------------------------------987777253167779999
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCHHHH
Q ss_conf 1536789998788789888999999999972988858976453458999985262899
Q gi|254780308|r 209 YAIDADEDGKIDLVKSNIDAIASAAKFLAKLGWTKCAGYQPGEKNFAILKHWNASLNY 266 (288)
Q Consensus 209 yavD~dgdG~~dl~~~~~Da~aS~AnyL~~~GW~~g~~~~~~~~n~~~~~~~n~s~~y 266 (288)
T Consensus 39 ~~~~~~-~~~~~~~-dp~~ni~~g~~yL~~~~~~~~~~~------~~al~aYN~G~~~ 88 (113)
T cd00254 39 YGVDGG-DGADDLF-DPEDNIRAGARYLKELYKRFGGDL------WLALAAYNAGPGR 88 (113)
T ss_pred HHHHCC-CCCCCCC-CHHHHHHHHHHHHHHHHHHCCCCH------HHHHHHHCCCHHH
T ss_conf 855101-1200127-988999999999999998809999------9999998788889