Query gi|254780308|ref|YP_003064721.1| putative membrane-bound lytic murein transglycosylase signal peptide protein [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 288
No_of_seqs 149 out of 1157
Neff 6.2
Searched_HMMs 39220
Date Sun May 29 15:59:14 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780308.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR02283 MltB_2 lytic murein 100.0 0 0 668.2 20.5 239 41-279 1-313 (313)
2 PRK10760 murein hydrolase B; P 100.0 0 0 593.0 24.2 240 40-281 53-355 (357)
3 COG2951 MltB Membrane-bound ly 100.0 0 0 582.4 23.5 243 40-283 39-341 (343)
4 TIGR02282 MltB lytic murein tr 100.0 0 0 562.9 13.2 229 48-277 3-323 (323)
5 cd00254 LT_GEWL Lytic Transgly 99.2 3.7E-11 9.4E-16 88.1 5.9 88 129-266 1-88 (113)
6 pfam01464 SLT Transglycosylase 98.9 3.8E-09 9.7E-14 75.9 6.1 99 117-266 2-100 (117)
7 PRK11671 mltC murein transglyc 98.3 2.1E-06 5.4E-11 59.3 6.5 85 109-238 188-277 (360)
8 PRK10783 mltD membrane-bound l 98.3 4.8E-05 1.2E-09 51.1 12.9 118 88-239 59-183 (449)
9 PRK11619 lytic murein transgly 97.9 3.8E-05 9.6E-10 51.8 7.1 49 190-239 513-564 (645)
10 PRK10859 putative transglycosy 97.8 0.0019 4.7E-08 41.6 14.0 102 171-282 305-406 (507)
11 COG0741 MltE Soluble lytic mur 97.2 0.00083 2.1E-08 43.7 5.3 81 114-238 139-220 (296)
12 cd01021 GEWL Goose Egg White L 96.7 0.0022 5.7E-08 41.1 4.1 51 96-146 13-63 (166)
13 pfam01832 Glucosaminidase Mann 95.4 0.012 3E-07 36.8 2.6 30 116-145 3-32 (136)
14 smart00047 LYZ2 Lysozyme subfa 95.1 0.024 6.2E-07 34.8 3.6 38 108-145 9-46 (147)
15 PRK12709 flgJ peptidoglycan hy 95.0 0.028 7.1E-07 34.5 3.6 41 107-147 171-211 (318)
16 PRK05684 flgJ peptidoglycan hy 94.8 0.033 8.5E-07 34.0 3.7 42 105-146 150-191 (313)
17 PRK12713 flgJ peptidoglycan hy 94.0 0.063 1.6E-06 32.3 3.6 39 108-146 182-220 (339)
18 PRK12712 flgJ peptidoglycan hy 93.2 0.11 2.8E-06 30.9 3.6 39 108-146 198-236 (344)
19 PRK12710 flgJ peptidoglycan hy 91.6 0.21 5.4E-06 29.1 3.5 40 107-146 130-169 (291)
20 COG1705 FlgJ Muramidase (flage 91.3 1.3 3.3E-05 24.4 7.6 100 106-239 42-141 (201)
21 PRK12711 flgJ peptidoglycan hy 87.2 0.78 2E-05 25.7 3.6 39 108-146 216-254 (392)
22 KOG0155 consensus 85.0 2.3 5.8E-05 22.9 5.1 83 38-123 237-323 (617)
23 COG5526 Lysozyme family protei 82.7 0.54 1.4E-05 26.7 1.1 77 102-179 31-115 (191)
24 TIGR02541 flagell_FlgJ flagell 80.9 2 5E-05 23.3 3.4 104 100-239 178-289 (332)
25 COG4764 Uncharacterized protei 78.8 1.8 4.7E-05 23.5 2.7 93 115-240 45-138 (197)
26 PRK13722 lytic transglycosylas 77.7 1.8 4.6E-05 23.5 2.4 89 115-247 20-111 (169)
27 PRK13888 conjugal transfer pro 73.4 3.6 9.3E-05 21.7 3.0 30 112-141 12-41 (206)
28 TIGR01751 crot-CoA-red crotony 72.0 0.96 2.4E-05 25.2 -0.2 12 134-145 139-150 (409)
29 PRK02998 prsA peptidylprolyl i 71.4 8.9 0.00023 19.3 8.4 63 1-67 1-63 (283)
30 PRK10802 peptidoglycan-associa 67.2 9.6 0.00025 19.1 4.1 26 1-26 1-26 (173)
31 PRK10356 hypothetical protein; 63.4 5.4 0.00014 20.7 2.2 15 225-239 188-202 (263)
32 PRK11063 metQ DL-methionine tr 61.8 14 0.00036 18.2 5.4 61 1-63 3-64 (271)
33 COG3953 SLT domain proteins [G 60.5 5 0.00013 20.8 1.6 15 197-211 50-64 (235)
34 pfam08566 Pam17 Mitochondrial 60.0 15 0.00038 18.0 6.2 103 85-188 21-135 (174)
35 pfam05225 HTH_psq helix-turn-h 59.7 10 0.00026 19.0 3.1 33 101-133 2-34 (45)
36 PRK09859 multidrug efflux syst 59.5 11 0.00027 18.9 3.1 25 1-26 1-25 (385)
37 PRK01622 OxaA-like protein pre 55.6 18 0.00045 17.5 8.2 115 1-130 2-135 (266)
38 COG1562 ERG9 Phytoene/squalene 55.1 18 0.00046 17.5 4.9 106 89-198 22-140 (288)
39 pfam06737 Transglycosylas Tran 53.9 19 0.00048 17.3 5.9 63 174-242 8-71 (76)
40 KOG0957 consensus 52.9 20 0.0005 17.2 6.4 111 46-159 385-513 (707)
41 pfam01839 FG-GAP FG-GAP repeat 48.1 7.3 0.00019 19.9 0.8 15 209-223 6-20 (30)
42 PRK11397 dacD D-alanyl-D-alani 47.9 24 0.0006 16.8 3.9 32 1-32 1-32 (390)
43 COG4193 LytD Beta- N-acetylglu 45.7 15 0.00039 17.9 2.1 41 104-144 89-129 (245)
44 PRK12700 flgH flagellar basal 43.3 28 0.00071 16.3 3.6 26 1-26 1-26 (230)
45 COG4875 Uncharacterized protei 39.1 31 0.00078 16.1 2.8 83 9-100 7-92 (156)
46 PRK09861 cytoplasmic membrane 38.5 33 0.00085 15.9 5.4 148 1-187 3-159 (272)
47 TIGR01815 TrpE-clade3 anthrani 37.9 21 0.00054 17.1 1.9 32 208-240 516-548 (726)
48 cd00569 HTH_Hin_like Helix-tur 37.6 30 0.00077 16.1 2.6 37 96-133 3-39 (42)
49 PRK11899 prephenate dehydratas 37.4 23 0.00058 16.9 2.0 25 90-114 96-120 (284)
50 PRK11050 manganese transport r 37.0 31 0.00079 16.1 2.6 54 87-141 82-136 (155)
51 PRK09436 thrA bifunctional asp 36.5 36 0.00091 15.7 3.8 109 37-160 513-624 (817)
52 pfam07172 GRP Glycine rich pro 34.8 23 0.00059 16.8 1.7 24 1-24 1-24 (91)
53 COG0077 PheA Prephenate dehydr 34.0 28 0.00072 16.3 2.0 27 89-115 94-120 (279)
54 PRK01178 rps24e 30S ribosomal 33.0 16 0.0004 17.8 0.6 31 115-146 34-64 (102)
55 PRK09589 celA 6-phospho-beta-g 31.0 44 0.0011 15.1 5.3 109 115-240 359-476 (479)
56 PRK09466 metL bifunctional asp 29.6 46 0.0012 15.0 3.9 109 36-159 506-617 (810)
57 pfam11588 DUF3243 Protein of u 29.4 47 0.0012 15.0 3.9 28 40-67 5-35 (81)
58 PTZ00102 disulphide isomerase; 28.2 49 0.0013 14.9 4.6 48 1-48 2-49 (479)
59 pfam09418 DUF2009 Protein of u 27.5 37 0.00093 15.6 1.7 18 109-126 174-191 (458)
60 KOG1168 consensus 25.9 54 0.0014 14.6 4.4 34 40-73 217-250 (385)
61 PRK08270 anaerobic ribonucleos 25.6 55 0.0014 14.6 4.0 50 38-90 222-271 (681)
62 PRK00022 lolB outer membrane l 24.8 57 0.0014 14.5 4.6 19 9-27 5-23 (203)
63 PRK05371 x-prolyl-dipeptidyl a 24.0 56 0.0014 14.5 2.1 45 179-223 138-188 (769)
64 pfam00623 RNA_pol_Rpb1_2 RNA p 23.6 27 0.00068 16.5 0.4 23 199-222 126-148 (165)
65 TIGR00565 trpE_proteo anthrani 23.5 42 0.0011 15.3 1.4 25 173-199 422-446 (505)
66 pfam09743 DUF2042 Uncharacteri 23.5 60 0.0015 14.3 3.7 121 42-174 53-188 (272)
67 COG3561 Phage anti-repressor p 23.3 54 0.0014 14.6 1.9 35 127-184 13-47 (110)
68 PRK11669 pbpG D-alanyl-D-alani 22.7 62 0.0016 14.2 2.8 21 1-21 1-21 (308)
69 COG5052 YOP1 Protein involved 22.5 63 0.0016 14.2 2.4 23 115-137 22-44 (186)
70 pfam07836 DmpG_comm DmpG-like 22.2 64 0.0016 14.2 4.2 41 99-139 5-46 (66)
71 KOG4061 consensus 21.6 66 0.0017 14.1 2.2 36 104-139 83-118 (217)
72 TIGR02630 xylose_isom_A xylose 21.4 66 0.0017 14.1 2.2 57 142-198 293-394 (437)
73 COG0349 Rnd Ribonuclease D [Tr 21.2 67 0.0017 14.0 2.5 18 56-73 138-155 (361)
74 COG4261 Predicted acyltransfer 20.9 43 0.0011 15.2 1.0 18 141-158 119-136 (309)
75 smart00663 RPOLA_N RNA polymer 20.3 33 0.00084 15.9 0.3 24 198-222 230-253 (295)
No 1
>TIGR02283 MltB_2 lytic murein transglycosylase; InterPro: IPR011970 Proteins of this entries are closely related to the MltB family lytic murein transglycosylases described by IPR011757 from INTERPRO and are likewise all proteobacterial, although that family and this one form clearly distinct clades. Several species have one member of each family. Many proteins of this entry(unlike the MltB family) contain an additional C-terminal domain, a putative peptidoglycan binding domain (IPR002477 from INTERPRO), not included in region described by this model. Many sequences appear to contain N-terminal lipoprotein attachment sites, as does Esherichia coli MltB in IPR011757 from INTERPRO..
Probab=100.00 E-value=0 Score=668.23 Aligned_cols=239 Identities=38% Similarity=0.629 Sum_probs=230.1
Q ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCC--CHHHHH-----HCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 08999999999999839998999998608777--702333-----20256666777989998764001357999998532
Q gi|254780308|r 41 RFGEWKSAARARAVREGMSPKTAKHLFADLEY--LDTTIA-----RDRKMVTSPPVSFKDYLDGLSSSEIIAQGIALKKA 113 (288)
Q Consensus 41 ~F~~wl~~l~~~A~~~Gis~~tl~~~f~~~~~--~~~VI~-----~dr~Qp~ef~~t~~~Y~~~~vs~~Ri~~Gr~~~~~ 113 (288)
+|++|+++|+.+|+++||+++|++++|+++++ ++.||+ +||+||.||+.++++|+++++++.||+.|++++++
T Consensus 1 ~F~~wl~~~~~~A~a~Gis~~t~d~a~~g~~~~pD~~v~~e~~~~~dr~Q~~eF~~~~~~Y~~~~~~~~r~~~G~~~~~~ 80 (313)
T TIGR02283 1 AFDAWLAQLRAEAAAKGISAATFDRAFAGVKPEPDQSVLNERKATLDRAQPKEFTQTFWDYLSRRVSPKRIAIGRALLQR 80 (313)
T ss_pred CHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCEEECCHHHCCCCCCCCCCCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHH
T ss_conf 93678999999998648988899998558723015031167888710136643576789997630147899999999999
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHCCCCCHHHCCC----CCHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHCCCCCHH-
Q ss_conf 34699999998389988944523100221010256----41899998753275-3156654789999998643877700-
Q gi|254780308|r 114 NSRLLINLKKEYGVPPGILMALWGLETHFGETMGK----TPLLSTLATLAYDC-RRAKFFTEQFFYALDLVKKGVISSH- 187 (288)
Q Consensus 114 ~~~~L~~ie~~yGV~~~ii~AiwGiET~yG~~~G~----~~vl~aLaTLA~d~-RR~~ff~~el~a~l~~~~~g~~~~~- 187 (288)
|+++|.+||++||||++||||||||||+||+++|+ +|||+||||||||| ||++||++||++||||+++|++++.
T Consensus 81 ~~~~L~~iE~~yGVp~~~l~AiWGmEs~fG~~~g~~~~M~dv~~sLATLAy~~~RR~~~F~~EL~aALkI~q~Gd~~~~~ 160 (313)
T TIGR02283 81 YAALLARIEKRYGVPAEILLAIWGMESDFGAYQGKDDVMFDVIRSLATLAYDGARRKDFFRTELIAALKILQRGDLTRAA 160 (313)
T ss_pred HHHHHHHHHHHCCCCCCHHEEHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCHHH
T ss_conf 99999998752388810410001134131031167510133899999986246655567668999999976057788465
Q ss_pred CCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCC-CCCCCCCCC-----------------
Q ss_conf 03675235786665522444215367899987887898889999999999729-888589764-----------------
Q gi|254780308|r 188 ALGATFGEIGQFQFLPVNVVKYAIDADEDGKIDLVKSNIDAIASAAKFLAKLG-WTKCAGYQP----------------- 249 (288)
Q Consensus 188 ~~GS~aGa~G~~QFmPs~~~~yavD~dgdG~~dl~~~~~Da~aS~AnyL~~~G-W~~g~~~~~----------------- 249 (288)
++|||||||||||||||+|++||||||||||+|||+|.|||||||||||+++| |++|+||+.
T Consensus 161 ~~GSWAGA~GQTQFlPssy~~yaVD~DGDGr~Diw~s~pDaLAStAnyL~~~ggW~~g~~Wg~EV~lP~~~d~~~~g~~~ 240 (313)
T TIGR02283 161 LKGSWAGAMGQTQFLPSSYLKYAVDFDGDGRRDIWNSVPDALASTANYLVRGGGWKRGRPWGYEVRLPEGFDYELAGSQQ 240 (313)
T ss_pred HHHHHHHHCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCEECCCCC
T ss_conf 01356765379875736555410234698844578886227899999998416865788841578716898700078855
Q ss_pred ----------------C---------------------------CHHHHHHHHHHCHHHHHHHHHHHHHHHCC
Q ss_conf ----------------5---------------------------34589999852628999999999999689
Q gi|254780308|r 250 ----------------G---------------------------EKNFAILKHWNASLNYNKTIAYIAAHIDG 279 (288)
Q Consensus 250 ----------------~---------------------------~~n~~~~~~~n~s~~y~~~v~~~a~~~~g 279 (288)
| .+||+||++||+|..|++||+||||||+|
T Consensus 241 ~~~~~~W~~~Gv~~~~G~~~p~~~~~~~A~L~~P~G~~GPAFL~~~NF~~~~~wN~S~~Yal~iG~lADri~g 313 (313)
T TIGR02283 241 KKPIAEWQALGVTRADGRPLPAAEAAAEASLLLPAGRKGPAFLVTPNFRVIKEWNRSDIYALTIGLLADRIAG 313 (313)
T ss_pred CCCHHHHHHCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 4777999856821689863775000187256546789885001305799999975578999999999987139
No 2
>PRK10760 murein hydrolase B; Provisional
Probab=100.00 E-value=0 Score=593.00 Aligned_cols=240 Identities=24% Similarity=0.406 Sum_probs=220.7
Q ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCHHHHHHCCCCCCCCC-------CCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 2089999999999998399989999986087777023332025666677-------798999876400135799999853
Q gi|254780308|r 40 DRFGEWKSAARARAVREGMSPKTAKHLFADLEYLDTTIARDRKMVTSPP-------VSFKDYLDGLSSSEIIAQGIALKK 112 (288)
Q Consensus 40 ~~F~~wl~~l~~~A~~~Gis~~tl~~~f~~~~~~~~VI~~dr~Qp~ef~-------~t~~~Y~~~~vs~~Ri~~Gr~~~~ 112 (288)
+++.+-...+.+.+.++|+++++++.+|+++++.++||+++++|+ |++ .+|.+|++++|++.||+.|++||+
T Consensus 53 ~~~p~~~~Fi~~mv~~~gf~~~~l~~~f~~a~~~~~vi~~~~rqa-~~~~~p~~~~~~W~~Yr~~fvt~~RI~~G~~f~~ 131 (357)
T PRK10760 53 ANNPNAQQFIDKMVNKHGFDRQQLQEILSQAKRLDWVLRLMDRQA-PTTRPPSGPNGAWLRYRKKFITPDNVQNGVVFWN 131 (357)
T ss_pred CCCHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHCCC-CCCCCCCCCCCCHHHHHHHHCCHHHHHHHHHHHH
T ss_conf 339069999999999619899999999995523188998874578-6568998777769999998689999999999999
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHCCCCCHHHCCCCCHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHHCCCCCHHC-CC
Q ss_conf 2346999999983899889445231002210102564189999875327-531566547899999986438777000-36
Q gi|254780308|r 113 ANSRLLINLKKEYGVPPGILMALWGLETHFGETMGKTPLLSTLATLAYD-CRRAKFFTEQFFYALDLVKKGVISSHA-LG 190 (288)
Q Consensus 113 ~~~~~L~~ie~~yGV~~~ii~AiwGiET~yG~~~G~~~vl~aLaTLA~d-~RR~~ff~~el~a~l~~~~~g~~~~~~-~G 190 (288)
+|+++|++||++||||++||||||||||+||+++|+++|+++|+||||| +||++||++||+++|+|++++++++.. +|
T Consensus 132 ~h~~~L~rae~~yGVp~~iivai~GvET~yG~~~G~~~vi~aLaTLAf~~prR~~ffr~eL~~~L~i~~~~~~dp~~l~G 211 (357)
T PRK10760 132 QYEDALNRAWQVYGVPPEIIVGIIGVETRWGRVMGKTRILDALATLSFNYPRRAEYFSGELETFLLMARDEQDDPLNLKG 211 (357)
T ss_pred HHHHHHHHHHHHHCCCHHHHEEEEEECCHHHCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHCCC
T ss_conf 98999999999978297791532552034423569996899999864377708899999999999999857998665467
Q ss_pred CCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCC---------------------
Q ss_conf 75235786665522444215367899987887898889999999999729888589764---------------------
Q gi|254780308|r 191 ATFGEIGQFQFLPVNVVKYAIDADEDGKIDLVKSNIDAIASAAKFLAKLGWTKCAGYQP--------------------- 249 (288)
Q Consensus 191 S~aGa~G~~QFmPs~~~~yavD~dgdG~~dl~~~~~Da~aS~AnyL~~~GW~~g~~~~~--------------------- 249 (288)
||||||||||||||||++||||||||||+|||++ .|||+|+||||++|||++|+||..
T Consensus 212 SwAGAMG~~QFMPSSy~~YAVDfDgDG~~DIwn~-~DAiaSvANYL~~~GW~~G~pv~v~a~~~~~~l~~g~~~~~~~~~ 290 (357)
T PRK10760 212 SFAGAMGYGQFMPSSFKQYAVDFDGDGHINLWDP-VDAIGSVANYFKAHGWVKGDQVAVPANGQAPGLENGFKTRYSISQ 290 (357)
T ss_pred CCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCC-HHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHCCCCCCCCHHH
T ss_conf 6541247765086889972818789986776751-589999999999739989981688368750111036656766999
Q ss_pred ---------------------------------CCHHHHHHHHHHCHHHHHHHHHHHHHHHCCCC
Q ss_conf ---------------------------------53458999985262899999999999968998
Q gi|254780308|r 250 ---------------------------------GEKNFAILKHWNASLNYNKTIAYIAAHIDGVP 281 (288)
Q Consensus 250 ---------------------------------~~~n~~~~~~~n~s~~y~~~v~~~a~~~~g~p 281 (288)
+.+||+||++||+|..|+++|.+||++|..+-
T Consensus 291 w~~~Gv~~~~~l~~~~~a~ll~l~~g~~~~~~L~~~NF~vI~rYN~S~~YAlAV~~La~~Ik~ar 355 (357)
T PRK10760 291 LAAAGLTPQQPLGNHQQASLLRLDVGTGYQYWYGLPNFYTITRYNHSTHYAMAVWQLGQAVALAR 355 (357)
T ss_pred HHHCCCCCCCCCCCCCCCCEEECCCCCCCEEEEECCCHHHHHHHCCCHHHHHHHHHHHHHHHHHH
T ss_conf 99869965888887676515863588886369976676988774086989999999999998755
No 3
>COG2951 MltB Membrane-bound lytic murein transglycosylase B [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=0 Score=582.41 Aligned_cols=243 Identities=35% Similarity=0.556 Sum_probs=234.0
Q ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 20899999999999983999899999860877770233320256666777989998764001357999998532346999
Q gi|254780308|r 40 DRFGEWKSAARARAVREGMSPKTAKHLFADLEYLDTTIARDRKMVTSPPVSFKDYLDGLSSSEIIAQGIALKKANSRLLI 119 (288)
Q Consensus 40 ~~F~~wl~~l~~~A~~~Gis~~tl~~~f~~~~~~~~VI~~dr~Qp~ef~~t~~~Y~~~~vs~~Ri~~Gr~~~~~~~~~L~ 119 (288)
.+|+.|+.+++.+|++.||++++++++|.+++++++||+.||.|| +|+.++++|..+++++.||+.|+.++++|.++|+
T Consensus 39 ~~f~~~~~~~~~~a~~~Gi~~~~~~~a~~~v~~~~~vi~~~r~q~-~f~~~~~~~~~~~i~~~rv~~G~~~~~~~~~~l~ 117 (343)
T COG2951 39 FAFNAWLQGFAPEAAAAGISAAVLDAAFAGVSYDPRVIARDRPQP-EFRQPVAEFSARRISEARVQQGRGFPAQYAAALA 117 (343)
T ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCHHHHHCCCCCC-CCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
T ss_conf 007999998899999809987677775178997344652568999-6657499998750336567778999999999999
Q ss_pred HHHHHHCCCHHHHHHHHHCCCCCHHHCCCCCHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHCCCCCHH-CCCCCCCCCC
Q ss_conf 99998389988944523100221010256418999987532-753156654789999998643877700-0367523578
Q gi|254780308|r 120 NLKKEYGVPPGILMALWGLETHFGETMGKTPLLSTLATLAY-DCRRAKFFTEQFFYALDLVKKGVISSH-ALGATFGEIG 197 (288)
Q Consensus 120 ~ie~~yGV~~~ii~AiwGiET~yG~~~G~~~vl~aLaTLA~-d~RR~~ff~~el~a~l~~~~~g~~~~~-~~GS~aGa~G 197 (288)
+||++||||+++|+|||||||+||+++|+++++++|+|||| ||||++||++||+++|+|+++|++++. ++||||||||
T Consensus 118 ~~e~~yGVp~~ii~aiWg~Et~fG~~~g~~~v~~ALaTLa~~~~rR~~~f~~eL~aaL~ii~~gdv~~~~~~GSwAGAmG 197 (343)
T COG2951 118 RAERRYGVPAPILVAIWGMETGFGRVMGKFRVLDALATLAFADPRRAGFFRDELIAALKIIQDGDVDPLALKGSWAGAMG 197 (343)
T ss_pred HHHHHHCCCCHHEEEEEHHHCCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHCCC
T ss_conf 99998389800325632221120310376506888775314554210111778999999876169873113411643147
Q ss_pred CCCCCHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCC----------------------------
Q ss_conf 6665522444215367899987887898889999999999729888589764----------------------------
Q gi|254780308|r 198 QFQFLPVNVVKYAIDADEDGKIDLVKSNIDAIASAAKFLAKLGWTKCAGYQP---------------------------- 249 (288)
Q Consensus 198 ~~QFmPs~~~~yavD~dgdG~~dl~~~~~Da~aS~AnyL~~~GW~~g~~~~~---------------------------- 249 (288)
|||||||||++||||||||||+|||||++|||+|+||||++|||++|.||+.
T Consensus 198 q~QFmPss~~~YaVD~DGDG~~Diw~s~~DAlaS~ANyL~~~GW~~g~pwg~ev~lp~~~~~~~~~~~k~~~~Wa~~gv~ 277 (343)
T COG2951 198 QTQFMPSSYLKYAVDGDGDGHRDIWNSVPDALASAANYLKSHGWDRGRPWGVEVALPAYNNSSLAGYAKTVADWAALGVT 277 (343)
T ss_pred CCCCCCHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCHHHHCCCCCHHHHHHHHCC
T ss_conf 76657188998610578987207766807699999999997599879953467633788613330256667899874001
Q ss_pred ------------------------------CCHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCCC
Q ss_conf ------------------------------5345899998526289999999999996899888
Q gi|254780308|r 250 ------------------------------GEKNFAILKHWNASLNYNKTIAYIAAHIDGVPIG 283 (288)
Q Consensus 250 ------------------------------~~~n~~~~~~~n~s~~y~~~v~~~a~~~~g~p~~ 283 (288)
+.+||++|++||+|+.|+++|+++|++|+|.|-.
T Consensus 278 ~~~g~p~~~~~~~~~a~ll~p~g~~G~~fl~~~Nf~~i~~yN~S~~Ya~ai~~la~~iag~~~~ 341 (343)
T COG2951 278 RAGGKPLPALGDTGKASLLLPAGRKGPAFLGLPNFYVILRYNRSDVYALAIGLLADRIAGAPGP 341 (343)
T ss_pred CCCCCCCCCCCCCCCCCEECCCCCCCCCEEECCCHHHHHHCCHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 3578889985545644222136888863221430799985050878999999999997458889
No 4
>TIGR02282 MltB lytic murein transglycosylase B; InterPro: IPR011757 This family consists of lytic murein transglycosylases (murein hydrolases) related to MltB (P41052 from SWISSPROT), which is a 38 kDa membrane-bound lipoprotein in Escherichia coli. The N-terminal region of this protein contains a lipoprotein-processing site which is conserved in about half the members of this family. Proteolytic cleavage of MltB produces a fully-active, soluble form of this enzyme known as Slt35 (for soluble lytic transglycosylase). This enzyme catalyzes the cleavage of the glycosidic bonds between N-acetylmuramic acid and N-acetylglucosamine residues in peptidoglycan. Its physiological role is unknown as deletion of the gene shows no obvious phenotype , though it has been suggested to play a role in recycling of muropeptides during cell elongation and/or cell division. The Slt35 enzyme is a monomer with an ellipsoid shape and is composed of three distinct domains known as the alpha, beta and core domains , . The alpha domain contains mainly alpha-helices, while the beta domain consists of a five-stranded antiparallel beta-sheet flanked by a short alpha-helix. The core domain is sandwiched between the alpha and beta domains and its fold is similar to that of lysozyme, but contains a single metal ion binding site in a helix-loop-helix module that is similar to the eukaryotic EF-hand calcium-binding fold, though in this case the loop is slightly longer than usual. Binding of Ca(2+) to this EF hand motif has been shown to be important for thermal stability of the protein . The substrate binding sites are found in the cleft formed by the core domain of the enzyme . Members of this family do not contain the putative peptidoglycan binding domain described by IPR002477 from INTERPRO, which is associated with several other classes of bacterial cell wall lytic enzymes..
Probab=100.00 E-value=0 Score=562.91 Aligned_cols=229 Identities=29% Similarity=0.476 Sum_probs=214.9
Q ss_pred HHHHHHHHCCCCHHHHHHHHCCCCCCHHHHHHCCCCCCCCC----CC-------HHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999998399989999986087777023332025666677----79-------89998764001357999998532346
Q gi|254780308|r 48 AARARAVREGMSPKTAKHLFADLEYLDTTIARDRKMVTSPP----VS-------FKDYLDGLSSSEIIAQGIALKKANSR 116 (288)
Q Consensus 48 ~l~~~A~~~Gis~~tl~~~f~~~~~~~~VI~~dr~Qp~ef~----~t-------~~~Y~~~~vs~~Ri~~Gr~~~~~~~~ 116 (288)
.+++.+.++|++++.|+.+|+++++++.||.+..++. |.. ++ |.+|+.++|+++||+.|++||++|++
T Consensus 3 FI~~~va~~~F~~~~l~A~L~~a~~~~~v~~~i~~P~-~~~~~iWkpPsGPnGaW~~YR~~Fi~~kRi~~G~~Fw~~~~~ 81 (323)
T TIGR02282 3 FIDELVAKHGFDRAQLEAVLAQAKYKDEVIRLIARPA-ESAKKIWKPPSGPNGAWDEYRAIFITPKRIDDGVKFWKKHED 81 (323)
T ss_pred HHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHCCCC-CCCEEEECCCCCCCCCHHHHCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 5788997508998999999983023378999731889-861367608757864525440034663557765999999999
Q ss_pred HHHHHHHHHCCCHHHHHHHHHCCCCCHHHCCCCCHHHHHHHHHCC-CC------------HHHHHHHHHHHHHHHHHCCC
Q ss_conf 999999983899889445231002210102564189999875327-53------------15665478999999864387
Q gi|254780308|r 117 LLINLKKEYGVPPGILMALWGLETHFGETMGKTPLLSTLATLAYD-CR------------RAKFFTEQFFYALDLVKKGV 183 (288)
Q Consensus 117 ~L~~ie~~yGV~~~ii~AiwGiET~yG~~~G~~~vl~aLaTLA~d-~R------------R~~ff~~el~a~l~~~~~g~ 183 (288)
.|+|+|++|||||+|||||+||||+||+++|+|+|||||+||||| || |++||++||..+|.|+++.+
T Consensus 82 aL~rAe~~yGVPp~vIVaIiGVET~YG~~~G~yRvlDAL~TLaF~YP~~GdPaklp~~~eRa~fFR~EL~~F~lL~~e~~ 161 (323)
T TIGR02282 82 ALERAEREYGVPPEVIVAIIGVETNYGRNTGKYRVLDALTTLAFDYPRSGDPAKLPRKEERATFFRGELGQFLLLAKEEQ 161 (323)
T ss_pred HHHHHHHHHCCCCEEEEEECCEECCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 99999985088800265411200101345687414444543135787786733467521477887899999999987427
Q ss_pred CCHHC-CCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCC-CCCCCCCC-------------
Q ss_conf 77000-3675235786665522444215367899987887898889999999999729-88858976-------------
Q gi|254780308|r 184 ISSHA-LGATFGEIGQFQFLPVNVVKYAIDADEDGKIDLVKSNIDAIASAAKFLAKLG-WTKCAGYQ------------- 248 (288)
Q Consensus 184 ~~~~~-~GS~aGa~G~~QFmPs~~~~yavD~dgdG~~dl~~~~~Da~aS~AnyL~~~G-W~~g~~~~------------- 248 (288)
.|+.+ +||||||||++|||||||++||||||+|||||||||+.|||+||||||+.|| |++|.+--
T Consensus 162 lD~~~lkGSYAGAmG~pQFMPSSYR~YAVDfD~dG~iDL~ns~~DAIgSvANyl~~HGGW~~~~~V~~~~~~~~d~~~d~ 241 (323)
T TIGR02282 162 LDPLTLKGSYAGAMGIPQFMPSSYRQYAVDFDGDGHIDLFNSVDDAIGSVANYLQAHGGWQRNDPVAVPAALAADAQGDK 241 (323)
T ss_pred CCHHHHCCCHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCEEEECHHHHHCCCCCCCCCCEEEECCCCCCCCCCC
T ss_conf 87202201111220666665035687611535787414887887637711565310673304881488710588874341
Q ss_pred -----------------------------------------------------CCCHHHHHHHHHHCHHHHHHHHHHHHH
Q ss_conf -----------------------------------------------------453458999985262899999999999
Q gi|254780308|r 249 -----------------------------------------------------PGEKNFAILKHWNASLNYNKTIAYIAA 275 (288)
Q Consensus 249 -----------------------------------------------------~~~~n~~~~~~~n~s~~y~~~v~~~a~ 275 (288)
-|.+||+||.+||+|..|+.+|..|++
T Consensus 242 ~~~~~~~g~~p~~~~~~L~~~G~~P~~G~~~~~~~~~~a~l~~L~~~~g~~YWlGl~NFyaITRYN~S~~YAmAVy~Ls~ 321 (323)
T TIGR02282 242 LLAKKFAGEKPHYSLSDLKAAGLAPAAGVDAPVEDEQKAALVDLEEEGGKEYWLGLNNFYAITRYNRSTLYAMAVYQLSQ 321 (323)
T ss_pred CCHHHHCCCCCCEEHHHHHHCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCEECCCHHHHHHHCCCCHHHHHHHHHHHH
T ss_conf 02132147876030788862688877664553214687248871678895103214123566311772436999999996
Q ss_pred HH
Q ss_conf 96
Q gi|254780308|r 276 HI 277 (288)
Q Consensus 276 ~~ 277 (288)
.|
T Consensus 322 ~l 323 (323)
T TIGR02282 322 AL 323 (323)
T ss_pred HC
T ss_conf 19
No 5
>cd00254 LT_GEWL Lytic Transglycosylase (LT) and Goose Egg White Lysozyme (GEWL) domain. Members include the soluble and insoluble membrane-bound LTs in bacteria, the LTs in bacteriophage lambda, as well as, the eukaryotic "goose-type" lysozymes (GEWL). LTs catalyze the cleavage of the beta-1,4-glycosidic bond between N-acetylmuramic acid (MurNAc) and N-acetyl-D-glucosamine (GlcNAc), as do "goose-type" lysozymes. However, in addition to this, they also make a new glycosidic bond with the C6 hydroxyl group of the same muramic acid residue.
Probab=99.19 E-value=3.7e-11 Score=88.06 Aligned_cols=88 Identities=27% Similarity=0.435 Sum_probs=70.6
Q ss_pred HHHHHHHHHCCCCCHHHCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCHHCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 88944523100221010256418999987532753156654789999998643877700036752357866655224442
Q gi|254780308|r 129 PGILMALWGLETHFGETMGKTPLLSTLATLAYDCRRAKFFTEQFFYALDLVKKGVISSHALGATFGEIGQFQFLPVNVVK 208 (288)
Q Consensus 129 ~~ii~AiwGiET~yG~~~G~~~vl~aLaTLA~d~RR~~ff~~el~a~l~~~~~g~~~~~~~GS~aGa~G~~QFmPs~~~~ 208 (288)
|.+|.||+.+||.|.....+ |++||+|.|||||+++..
T Consensus 1 p~ll~ai~~~ES~~~~~a~~------------------------------------------s~~~a~GlmQi~~~t~~~ 38 (113)
T cd00254 1 PALLLAIIRQESGFNPNAVN------------------------------------------SGAGAVGLMQFMPSTARA 38 (113)
T ss_pred CHHHHHHHHHHCCCCCCCCC------------------------------------------CCCCCCCCCCCCHHHHHH
T ss_conf 99999999985599989866------------------------------------------987777253167779999
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCHHHH
Q ss_conf 1536789998788789888999999999972988858976453458999985262899
Q gi|254780308|r 209 YAIDADEDGKIDLVKSNIDAIASAAKFLAKLGWTKCAGYQPGEKNFAILKHWNASLNY 266 (288)
Q Consensus 209 yavD~dgdG~~dl~~~~~Da~aS~AnyL~~~GW~~g~~~~~~~~n~~~~~~~n~s~~y 266 (288)
++++++ ++..|++ ++.|++...+.||+.+..+.+..| ..++..||.....
T Consensus 39 ~~~~~~-~~~~~~~-dp~~ni~~g~~yL~~~~~~~~~~~------~~al~aYN~G~~~ 88 (113)
T cd00254 39 YGVDGG-DGADDLF-DPEDNIRAGARYLKELYKRFGGDL------WLALAAYNAGPGR 88 (113)
T ss_pred HHHHCC-CCCCCCC-CHHHHHHHHHHHHHHHHHHCCCCH------HHHHHHHCCCHHH
T ss_conf 855101-1200127-988999999999999998809999------9999998788889
No 6
>pfam01464 SLT Transglycosylase SLT domain. This family is distantly related to pfam00062. Members are found in phages, type II, type III and type IV secretion systems.
Probab=98.89 E-value=3.8e-09 Score=75.91 Aligned_cols=99 Identities=26% Similarity=0.421 Sum_probs=75.7
Q ss_pred HHHHHHHHHCCCHHHHHHHHHCCCCCHHHCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCHHCCCCCCCCC
Q ss_conf 99999998389988944523100221010256418999987532753156654789999998643877700036752357
Q gi|254780308|r 117 LLINLKKEYGVPPGILMALWGLETHFGETMGKTPLLSTLATLAYDCRRAKFFTEQFFYALDLVKKGVISSHALGATFGEI 196 (288)
Q Consensus 117 ~L~~ie~~yGV~~~ii~AiwGiET~yG~~~G~~~vl~aLaTLA~d~RR~~ff~~el~a~l~~~~~g~~~~~~~GS~aGa~ 196 (288)
++.+..++|||||++|.||.-.||.|... .. |.+||+
T Consensus 2 ~i~~~a~~~~v~p~ll~ai~~~ES~f~p~------------------------------------------av-S~~gA~ 38 (117)
T pfam01464 2 LIIKAAEKYGIDPSLLAAIAQQESGFNPN------------------------------------------AI-SGSGAL 38 (117)
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHCCCCCC------------------------------------------CC-CCCCCC
T ss_conf 89999989198999999999987599998------------------------------------------98-798871
Q ss_pred CCCCCCHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCHHHH
Q ss_conf 8666552244421536789998788789888999999999972988858976453458999985262899
Q gi|254780308|r 197 GQFQFLPVNVVKYAIDADEDGKIDLVKSNIDAIASAAKFLAKLGWTKCAGYQPGEKNFAILKHWNASLNY 266 (288)
Q Consensus 197 G~~QFmPs~~~~yavD~dgdG~~dl~~~~~Da~aS~AnyL~~~GW~~g~~~~~~~~n~~~~~~~n~s~~y 266 (288)
|.|||||.|+..++... +.+.-|++ ++.+.+--.+.||+..-=+-+.. -..++..||.-...
T Consensus 39 GlmQi~p~t~~~~~~~~-~~~~~~l~-dp~~ni~~g~~yL~~l~~~~~~~------~~~alaaYNaG~g~ 100 (117)
T pfam01464 39 GLMQIMPSTAKALGLKG-SPGEDDLF-DPCDNISAGAKYLKHLYKRFGGN------LWLALAAYNAGPGR 100 (117)
T ss_pred CHHHCCHHHHHHHHHHC-CCCHHHCC-CHHHHHHHHHHHHHHHHHHCCCC------HHHHHHHHCCCHHH
T ss_conf 31632788999998702-89802004-99999999999999999983998------99999999158889
No 7
>PRK11671 mltC murein transglycosylase C; Provisional
Probab=98.30 E-value=2.1e-06 Score=59.33 Aligned_cols=85 Identities=15% Similarity=0.233 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCHHHCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCHHC
Q ss_conf 98532346999999983899889445231002210102564189999875327531566547899999986438777000
Q gi|254780308|r 109 ALKKANSRLLINLKKEYGVPPGILMALWGLETHFGETMGKTPLLSTLATLAYDCRRAKFFTEQFFYALDLVKKGVISSHA 188 (288)
Q Consensus 109 ~~~~~~~~~L~~ie~~yGV~~~ii~AiwGiET~yG~~~G~~~vl~aLaTLA~d~RR~~ff~~el~a~l~~~~~g~~~~~~ 188 (288)
..-.+|.....+..++|||||.+|.||+-.||+|--. .
T Consensus 188 ~ra~kY~~~V~~~akrygvdp~LV~AIIrtES~FnP~------------------------------------------A 225 (360)
T PRK11671 188 KRAHKYLPMVRQASRKYGVDESLILAIMQTESSFNPY------------------------------------------A 225 (360)
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCC------------------------------------------C
T ss_conf 9999999999999998098999999999886279987------------------------------------------7
Q ss_pred CCCCCCCCCCCCCCHHHHH-----HCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 3675235786665522444-----2153678999878878988899999999997
Q gi|254780308|r 189 LGATFGEIGQFQFLPVNVV-----KYAIDADEDGKIDLVKSNIDAIASAAKFLAK 238 (288)
Q Consensus 189 ~GS~aGa~G~~QFmPs~~~-----~yavD~dgdG~~dl~~~~~Da~aS~AnyL~~ 238 (288)
-|++||+|.||-||+|-- ..+.++.- .+..|+ ++..-|--.+-||+.
T Consensus 226 -vS~agA~GLMQImP~TAgrdv~~~~g~~~~p-s~~~L~-dP~~NI~~GtaYL~~ 277 (360)
T PRK11671 226 -VSRADALGLMQVVQHTAGKDVFRSKGKSGQP-SRSYLF-DPANNIDTGTAYLAI 277 (360)
T ss_pred -CCCCCCCEEEEECCCHHHHHHHHHHCCCCCC-CHHHHC-CHHHHHHHHHHHHHH
T ss_conf -2488881344468215679999983878999-877705-968899999999999
No 8
>PRK10783 mltD membrane-bound lytic murein transglycosylase D; Provisional
Probab=98.26 E-value=4.8e-05 Score=51.13 Aligned_cols=118 Identities=14% Similarity=0.163 Sum_probs=78.8
Q ss_pred CCCHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCHHHCCCCCHHHHHHHHHCCC
Q ss_conf 7798999876-----40013579999985323469999999838998894452310022101025641899998753275
Q gi|254780308|r 88 PVSFKDYLDG-----LSSSEIIAQGIALKKANSRLLINLKKEYGVPPGILMALWGLETHFGETMGKTPLLSTLATLAYDC 162 (288)
Q Consensus 88 ~~t~~~Y~~~-----~vs~~Ri~~Gr~~~~~~~~~L~~ie~~yGV~~~ii~AiwGiET~yG~~~G~~~vl~aLaTLA~d~ 162 (288)
....|+++.. ..+..||..-+..|.+|..-|+++-++=.-==.+|+...
T Consensus 59 ~~dlw~~i~~~~~~~~~~~~~v~~~~~~y~~~~~~~~~~~~ra~pyl~~Iv~el-------------------------- 112 (449)
T PRK10783 59 DQDLWAFIGDELKMGIPENSRIREQKQKYLRNKSYLHDVTLRAEPYMYWIAGQI-------------------------- 112 (449)
T ss_pred CCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHCHHHHHHHHHHCCCCHHHHHHHH--------------------------
T ss_conf 535899998617889987688999999997485999999986125399999999--------------------------
Q ss_pred CHHHHHHHHHHHHHHHHHCCCCCHHCCCCCCCCCCCCCCCHHHHHHCCCCCC--CCCCCCCCCCHHHHHHHHHHHHHHC
Q ss_conf 3156654789999998643877700036752357866655224442153678--9998788789888999999999972
Q gi|254780308|r 163 RRAKFFTEQFFYALDLVKKGVISSHALGATFGEIGQFQFLPVNVVKYAIDAD--EDGKIDLVKSNIDAIASAAKFLAKL 239 (288)
Q Consensus 163 RR~~ff~~el~a~l~~~~~g~~~~~~~GS~aGa~G~~QFmPs~~~~yavD~d--gdG~~dl~~~~~Da~aS~AnyL~~~ 239 (288)
+++. -.+=+++|-|+|-+..+. .. |.+||.|.=||||+|=..|+..-| -|||+|+..|. +| ++.||+..
T Consensus 113 ~~r~--lP~ELalLp~VES~f~P~-A~-S~a~AaGlWQFmp~Tgr~yGL~~n~w~DeRrD~~~ST-~A---Al~YL~~L 183 (449)
T PRK10783 113 KKRN--MPMELVLLPIVESAFDPH-AT-SGANAAGIWQIIPSTGRNYGLKQTRWYDARRDVVAST-TA---ALDMMQRL 183 (449)
T ss_pred HHCC--CCHHHHHHHHHHCCCCCC-CC-CCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCHHHHH-HH---HHHHHHHH
T ss_conf 9859--988898788753279977-83-6988830010267679875987366421358979999-99---99999999
No 9
>PRK11619 lytic murein transglycosylase; Provisional
Probab=97.95 E-value=3.8e-05 Score=51.78 Aligned_cols=49 Identities=14% Similarity=0.169 Sum_probs=35.2
Q ss_pred CCCCCCCCCCCCCHHHHHHCCCCCCCC---CCCCCCCCHHHHHHHHHHHHHHC
Q ss_conf 675235786665522444215367899---98788789888999999999972
Q gi|254780308|r 190 GATFGEIGQFQFLPVNVVKYAIDADED---GKIDLVKSNIDAIASAAKFLAKL 239 (288)
Q Consensus 190 GS~aGa~G~~QFmPs~~~~yavD~dgd---G~~dl~~~~~Da~aS~AnyL~~~ 239 (288)
.|++||.|.||.||.|-..-|....-. +..+|. ++...|.=...||+..
T Consensus 513 ~S~~gA~GlmQ~mP~Ta~~~a~~~~~~~~~~~~~l~-~~~~ni~~G~~yl~~l 564 (645)
T PRK11619 513 KSPVGASGLMQIMPGTATHTVKMFSIPGYSSPSQLL-DPETNINIGTSYLQYV 564 (645)
T ss_pred CCCCCCCCCHHHCHHHHHHHHHHCCCCCCCCHHHCC-CHHHHHHHHHHHHHHH
T ss_conf 767787313631779999999983997778866606-9999999999999999
No 10
>PRK10859 putative transglycosylase; Provisional
Probab=97.82 E-value=0.0019 Score=41.56 Aligned_cols=102 Identities=15% Similarity=0.153 Sum_probs=66.9
Q ss_pred HHHHHHHHHHCCCCCHHCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 89999998643877700036752357866655224442153678999878878988899999999997298885897645
Q gi|254780308|r 171 QFFYALDLVKKGVISSHALGATFGEIGQFQFLPVNVVKYAIDADEDGKIDLVKSNIDAIASAAKFLAKLGWTKCAGYQPG 250 (288)
Q Consensus 171 el~a~l~~~~~g~~~~~~~GS~aGa~G~~QFmPs~~~~yavD~dgdG~~dl~~~~~Da~aS~AnyL~~~GW~~g~~~~~~ 250 (288)
.|+|++- .++-+.+|+.. ||+|+.|.||-||.|-...+|+ |.. ++.-.|...|.||+..-=+--..-.+.
T Consensus 305 rLLAA~~-YQEShwdp~A~-S~tGvrGlMmLt~~TA~~lGV~-------nr~-DPeqsI~gGarYL~~l~~r~pd~i~e~ 374 (507)
T PRK10859 305 RLLAAIA-YQESHWDPQAT-SPTGVRGLMMLTKNTAQSLGIT-------DRT-DAEQSISGGARYLQDMMSKVPETVPED 374 (507)
T ss_pred HHHHHHH-HHHHCCCCCCC-CCCCCHHHHHHHHHHHHHCCCC-------CCC-CHHHHHHHHHHHHHHHHHHCCCCCCHH
T ss_conf 9999999-88733898782-7631003777358789866998-------878-978889999999999997577568908
Q ss_pred CHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCC
Q ss_conf 34589999852628999999999999689988
Q gi|254780308|r 251 EKNFAILKHWNASLNYNKTIAYIAAHIDGVPI 282 (288)
Q Consensus 251 ~~n~~~~~~~n~s~~y~~~v~~~a~~~~g~p~ 282 (288)
++-+-++-.||.-..-..-.--+|.+..+.|-
T Consensus 375 dR~wFaLAAYN~G~GHv~DAr~La~~~G~nP~ 406 (507)
T PRK10859 375 ERIWFALAAYNMGYAHMLDARALTAKQKGNPD 406 (507)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCC
T ss_conf 88999999873767789999999998088996
No 11
>COG0741 MltE Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) [Cell envelope biogenesis, outer membrane]
Probab=97.18 E-value=0.00083 Score=43.68 Aligned_cols=81 Identities=23% Similarity=0.409 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHCCCCCHHHCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCHHCCCCCC
Q ss_conf 34699999998389988944523100221010256418999987532753156654789999998643877700036752
Q gi|254780308|r 114 NSRLLINLKKEYGVPPGILMALWGLETHFGETMGKTPLLSTLATLAYDCRRAKFFTEQFFYALDLVKKGVISSHALGATF 193 (288)
Q Consensus 114 ~~~~L~~ie~~yGV~~~ii~AiwGiET~yG~~~G~~~vl~aLaTLA~d~RR~~ff~~el~a~l~~~~~g~~~~~~~GS~a 193 (288)
+..+.....++|||++..+.+|...||.|... .. |.+
T Consensus 139 ~~~~~~~~~~~~~v~~~~v~ai~~~ES~~~~~------------------------------------------a~-s~~ 175 (296)
T COG0741 139 YQPLILSAARQYGVDPDLVYAIIRQESAFNPA------------------------------------------AV-SRA 175 (296)
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCC------------------------------------------CC-CCC
T ss_conf 26889987876499899999999988614630------------------------------------------10-235
Q ss_pred CCCCCCCCCHHHHHHCCCCCCCC-CCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 35786665522444215367899-9878878988899999999997
Q gi|254780308|r 194 GEIGQFQFLPVNVVKYAIDADED-GKIDLVKSNIDAIASAAKFLAK 238 (288)
Q Consensus 194 Ga~G~~QFmPs~~~~yavD~dgd-G~~dl~~~~~Da~aS~AnyL~~ 238 (288)
||+|.||.||.+....+...... ...+++ ++...+--.+.||+.
T Consensus 176 ga~glmQ~~~~ta~~~~~~~~~~~~~~~l~-dp~~Ni~~G~~yL~~ 220 (296)
T COG0741 176 GALGLMQGMPATARRLAYRLGLGKSAADLF-DPAQNIKYGAAYLKS 220 (296)
T ss_pred CCCHHCCCCHHHHHHHHHHCCCCCCHHHHH-CHHHHHHHHHHHHHH
T ss_conf 531001278798999887026663166652-887789988999999
No 12
>cd01021 GEWL Goose Egg White Lysozyme domain. Eukaryotic "goose-type" lysozymes (GEWL). These enzymes catalyze the cleavage of the beta-1,4-glycosidic bond between N-acetylmuramic acid (MurNAc) and N-acetylglucosamine (GlcNAc). Members include tunicate, Japanese flounder, ostrich, and mouse.
Probab=96.69 E-value=0.0022 Score=41.07 Aligned_cols=51 Identities=14% Similarity=0.265 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCHHHC
Q ss_conf 764001357999998532346999999983899889445231002210102
Q gi|254780308|r 96 DGLSSSEIIAQGIALKKANSRLLINLKKEYGVPPGILMALWGLETHFGETM 146 (288)
Q Consensus 96 ~~~vs~~Ri~~Gr~~~~~~~~~L~~ie~~yGV~~~ii~AiwGiET~yG~~~ 146 (288)
-...+..-...-...+++|+..+.++.++|+|+|.+|+||+-.||+.|..+
T Consensus 13 Gv~aS~~~Ae~D~~~m~kYk~~I~~vg~k~~idPAlIAaIiSRESraG~~L 63 (166)
T cd01021 13 GVRASEKLAENDLGAMKKYQSLIKKVGQKKCIDPAVIAAIISRESRAGKVL 63 (166)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCHH
T ss_conf 603779999988999998799999999980999999999987434677321
No 13
>pfam01832 Glucosaminidase Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase. This family includes Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase EC:3.2.1.96. As well as the flageller protein J that has been shown to hydrolyse peptidoglycan.
Probab=95.37 E-value=0.012 Score=36.75 Aligned_cols=30 Identities=37% Similarity=0.703 Sum_probs=26.8
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHCCCCCHHH
Q ss_conf 699999998389988944523100221010
Q gi|254780308|r 116 RLLINLKKEYGVPPGILMALWGLETHFGET 145 (288)
Q Consensus 116 ~~L~~ie~~yGV~~~ii~AiwGiET~yG~~ 145 (288)
....++.++|||||++++|-+.+||.+|+.
T Consensus 3 ~~a~~~~~~~gi~psv~iAQA~lESgwG~S 32 (136)
T pfam01832 3 PAAQKLAKKYGIPPSLLLAQAALESGWGTS 32 (136)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHCCCCC
T ss_conf 689999999694999999999998168815
No 14
>smart00047 LYZ2 Lysozyme subfamily 2. Eubacterial enzymes distantly related to eukaryotic lysozymes.
Probab=95.15 E-value=0.024 Score=34.83 Aligned_cols=38 Identities=24% Similarity=0.245 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCHHH
Q ss_conf 99853234699999998389988944523100221010
Q gi|254780308|r 108 IALKKANSRLLINLKKEYGVPPGILMALWGLETHFGET 145 (288)
Q Consensus 108 r~~~~~~~~~L~~ie~~yGV~~~ii~AiwGiET~yG~~ 145 (288)
++|..+....=.++.++|||||+|++|=+.+||.+|+.
T Consensus 9 ~~Fi~~i~~~A~~~~~~~gi~~Si~iAQa~LESgwG~S 46 (147)
T smart00047 9 LEFVGKIFNEAQKAYQINGVYPSILIAQAALESGWGTS 46 (147)
T ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCC
T ss_conf 99999999999999998499989999999997448877
No 15
>PRK12709 flgJ peptidoglycan hydrolase; Provisional
Probab=95.00 E-value=0.028 Score=34.46 Aligned_cols=41 Identities=15% Similarity=0.149 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCHHHCC
Q ss_conf 99985323469999999838998894452310022101025
Q gi|254780308|r 107 GIALKKANSRLLINLKKEYGVPPGILMALWGLETHFGETMG 147 (288)
Q Consensus 107 Gr~~~~~~~~~L~~ie~~yGV~~~ii~AiwGiET~yG~~~G 147 (288)
-.+|.......=+++.+++||||++|+|=+.+||.+|+..-
T Consensus 171 ~~~FV~~l~p~A~~aa~~~Gv~~~~~iAQAALESGWGk~~i 211 (318)
T PRK12709 171 ADAFVDKLAAPAQAASAATGIPARFIVGQAALESGWGKREI 211 (318)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCC
T ss_conf 99999998999999999969498999999999715451215
No 16
>PRK05684 flgJ peptidoglycan hydrolase; Validated
Probab=94.84 E-value=0.033 Score=33.97 Aligned_cols=42 Identities=24% Similarity=0.255 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCHHHC
Q ss_conf 999998532346999999983899889445231002210102
Q gi|254780308|r 105 AQGIALKKANSRLLINLKKEYGVPPGILMALWGLETHFGETM 146 (288)
Q Consensus 105 ~~Gr~~~~~~~~~L~~ie~~yGV~~~ii~AiwGiET~yG~~~ 146 (288)
..-.+|.......=+++.+++||||++|+|=..+||.+|+..
T Consensus 150 ~s~~~FV~~l~p~A~~aa~~~Gv~~~~~iAQAALESGWG~~~ 191 (313)
T PRK05684 150 GSSDDFVATLSPPAEKAAQQSGVPHHLLLAQAALETGWGQRQ 191 (313)
T ss_pred CCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCC
T ss_conf 998999999899999999985959899999999866767221
No 17
>PRK12713 flgJ peptidoglycan hydrolase; Provisional
Probab=94.04 E-value=0.063 Score=32.30 Aligned_cols=39 Identities=21% Similarity=0.316 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCHHHC
Q ss_conf 998532346999999983899889445231002210102
Q gi|254780308|r 108 IALKKANSRLLINLKKEYGVPPGILMALWGLETHFGETM 146 (288)
Q Consensus 108 r~~~~~~~~~L~~ie~~yGV~~~ii~AiwGiET~yG~~~ 146 (288)
.+|..+....=+++.+++||||+||+|=..+||.+|+..
T Consensus 182 ~eFV~~L~P~Aq~AA~~~Gv~~~~~iAQAALESGWGk~~ 220 (339)
T PRK12713 182 VDFVSRMSRAANVAAQQSGVPARLILGQAALESGWGRRE 220 (339)
T ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCC
T ss_conf 999999799999999997939999999999970346021
No 18
>PRK12712 flgJ peptidoglycan hydrolase; Provisional
Probab=93.18 E-value=0.11 Score=30.90 Aligned_cols=39 Identities=18% Similarity=0.233 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCHHHC
Q ss_conf 998532346999999983899889445231002210102
Q gi|254780308|r 108 IALKKANSRLLINLKKEYGVPPGILMALWGLETHFGETM 146 (288)
Q Consensus 108 r~~~~~~~~~L~~ie~~yGV~~~ii~AiwGiET~yG~~~ 146 (288)
.+|......-=+++.+++||||++|+|=..+||.+|+..
T Consensus 198 ~~FV~~l~P~Aq~AA~~~Gv~~~~~iAQAALESGWGk~~ 236 (344)
T PRK12712 198 SAFVARMAGPAEAASRASGVPARLIVGQAALESGWGRRE 236 (344)
T ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCC
T ss_conf 999998689999999996949899999999970434010
No 19
>PRK12710 flgJ peptidoglycan hydrolase; Provisional
Probab=91.64 E-value=0.21 Score=29.13 Aligned_cols=40 Identities=23% Similarity=0.183 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCHHHC
Q ss_conf 9998532346999999983899889445231002210102
Q gi|254780308|r 107 GIALKKANSRLLINLKKEYGVPPGILMALWGLETHFGETM 146 (288)
Q Consensus 107 Gr~~~~~~~~~L~~ie~~yGV~~~ii~AiwGiET~yG~~~ 146 (288)
..+|.......-+++.+++||||++|+|==.+||.+|++.
T Consensus 130 ~~~FV~~l~p~A~~aa~~~Gv~~~~~lAQAALEsGWGk~~ 169 (291)
T PRK12710 130 VDDFVKSVWPTAKQAASLIGLDPKLLVAQAALETGWGKFV 169 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCC
T ss_conf 9999999899999999985959899999999864767233
No 20
>COG1705 FlgJ Muramidase (flagellum-specific) [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=91.30 E-value=1.3 Score=24.41 Aligned_cols=100 Identities=22% Similarity=0.222 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCHHHCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 99998532346999999983899889445231002210102564189999875327531566547899999986438777
Q gi|254780308|r 106 QGIALKKANSRLLINLKKEYGVPPGILMALWGLETHFGETMGKTPLLSTLATLAYDCRRAKFFTEQFFYALDLVKKGVIS 185 (288)
Q Consensus 106 ~Gr~~~~~~~~~L~~ie~~yGV~~~ii~AiwGiET~yG~~~G~~~vl~aLaTLA~d~RR~~ff~~el~a~l~~~~~g~~~ 185 (288)
.-..|+.+-...=..+.++|||+++|++|=--+||++|+.+ |++ .+..-
T Consensus 42 ~~~~Fi~~i~~~A~~~~~~~gi~~Si~iAQAiLESgwGks~--------l~~-----------------------~~~NL 90 (201)
T COG1705 42 SQQAFIDKIAPAAQPLAQEYGILPSITIAQAILESGWGKSE--------LAS-----------------------KGNNL 90 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCHH--------HCC-----------------------CCCCE
T ss_conf 29999999989999999984988799999999973776002--------215-----------------------88875
Q ss_pred HHCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHC
Q ss_conf 000367523578666552244421536789998788789888999999999972
Q gi|254780308|r 186 SHALGATFGEIGQFQFLPVNVVKYAIDADEDGKIDLVKSNIDAIASAAKFLAKL 239 (288)
Q Consensus 186 ~~~~GS~aGa~G~~QFmPs~~~~yavD~dgdG~~dl~~~~~Da~aS~AnyL~~~ 239 (288)
...+|||-|. ..=|++.=-.=++-..=+-+=-.+.|..|++.--+++|.+.
T Consensus 91 FGIK~s~~G~---sv~~~T~E~~~G~~~~i~a~FR~Y~S~~eS~~Dya~ll~~~ 141 (201)
T COG1705 91 FGIKGSYNGP---SVTLKTQEYENGVAVKIKAKFRVYPSYAESLSDYARLLRNG 141 (201)
T ss_pred EEEEECCCCC---CEEEECEEEECCEEEEEEECCCCCCCHHHHHHHHHHHHHCC
T ss_conf 5456136788---56750446358988897226232699899999999998749
No 21
>PRK12711 flgJ peptidoglycan hydrolase; Reviewed
Probab=87.22 E-value=0.78 Score=25.70 Aligned_cols=39 Identities=26% Similarity=0.220 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCHHHC
Q ss_conf 998532346999999983899889445231002210102
Q gi|254780308|r 108 IALKKANSRLLINLKKEYGVPPGILMALWGLETHFGETM 146 (288)
Q Consensus 108 r~~~~~~~~~L~~ie~~yGV~~~ii~AiwGiET~yG~~~ 146 (288)
.+|.......=+++.++-||||++|+|==.+||.+|+..
T Consensus 216 e~FV~~L~P~AqkAA~~lGVpp~~L~AQAALEtGWGk~~ 254 (392)
T PRK12711 216 EGFVAKIWTHAQKAARELGVDPRALVAQAALETGWGRRG 254 (392)
T ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCC
T ss_conf 999999899999999996949899999999862357566
No 22
>KOG0155 consensus
Probab=84.99 E-value=2.3 Score=22.90 Aligned_cols=83 Identities=13% Similarity=0.128 Sum_probs=64.4
Q ss_pred CHHHHHHHHHHHHHHHHHCCCCH-HHHHHHHCCCCCCHHHHHHCCCCCCCCCCCHHHHHHHHHHHHH---HHHHHHHHHH
Q ss_conf 83208999999999999839998-9999986087777023332025666677798999876400135---7999998532
Q gi|254780308|r 38 TADRFGEWKSAARARAVREGMSP-KTAKHLFADLEYLDTTIARDRKMVTSPPVSFKDYLDGLSSSEI---IAQGIALKKA 113 (288)
Q Consensus 38 ~~~~F~~wl~~l~~~A~~~Gis~-~tl~~~f~~~~~~~~VI~~dr~Qp~ef~~t~~~Y~~~~vs~~R---i~~Gr~~~~~ 113 (288)
+.-..++.+..|+.....+||+. ++.+..|..+-++|+-..++.. +.+.-|++|.+.++...+ ...-++....
T Consensus 237 ~~vplEer~kqFkEMLkERgVsafStWEkel~KivfDpR~~~l~s~---~Rk~vFeqyvKtr~eee~~ekr~r~k~AkEe 313 (617)
T KOG0155 237 TNVPLEERRKQFKEMLKERGVSAFSTWEKELPKIVFDPRYLLLNSG---ERKQVFEQYVKTRAEEEKREKRKRRKEAKEE 313 (617)
T ss_pred CCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCEECCCHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 3698799999999999963986565588861011378420003778---8899999999999999999999999999999
Q ss_pred HHHHHHHHHH
Q ss_conf 3469999999
Q gi|254780308|r 114 NSRLLINLKK 123 (288)
Q Consensus 114 ~~~~L~~ie~ 123 (288)
...+|...+-
T Consensus 314 F~kLL~e~~~ 323 (617)
T KOG0155 314 FKKLLAEAEL 323 (617)
T ss_pred HHHHHHHCCC
T ss_conf 9999985747
No 23
>COG5526 Lysozyme family protein [General function prediction only]
Probab=82.66 E-value=0.54 Score=26.68 Aligned_cols=77 Identities=17% Similarity=0.191 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCC--CCHHHCCCCCHHHHHHHHHCCCCHHHH------HHHHHH
Q ss_conf 357999998532346999999983899889445231002--210102564189999875327531566------547899
Q gi|254780308|r 102 EIIAQGIALKKANSRLLINLKKEYGVPPGILMALWGLET--HFGETMGKTPLLSTLATLAYDCRRAKF------FTEQFF 173 (288)
Q Consensus 102 ~Ri~~Gr~~~~~~~~~L~~ie~~yGV~~~ii~AiwGiET--~yG~~~G~~~vl~aLaTLA~d~RR~~f------f~~el~ 173 (288)
.++++-++.+...+...+.||++.|||.-+|-+|-.+|+ |||.+++|=+.|.+-.|.-=.+| ..| |++-.+
T Consensus 31 ~~vkk~~k~ila~k~rYe~i~sqT~iPW~fiG~iH~~E~SlnF~thLhNGdpL~aRT~rVPkgR-p~~~~Pp~~we~sAl 109 (191)
T COG5526 31 SVVKKEAKRILAGKPRYEQIESQTGIPWWFIGLIHYRESSLNFGTHLHNGDPLGARTTRVPKGR-PPFTGPPYAWEDSAL 109 (191)
T ss_pred HHHHHHHHHHHCCCCCCHHHHCCCCCCEEEEEHHHHHHCCCCCCCCCCCCCCCCCCEEECCCCC-CCCCCCCCHHHHHHH
T ss_conf 9999999998618852002321458872322113431123543432468984566115566899-999998930666678
Q ss_pred HHHHHH
Q ss_conf 999986
Q gi|254780308|r 174 YALDLV 179 (288)
Q Consensus 174 a~l~~~ 179 (288)
.||.+-
T Consensus 110 DAL~~~ 115 (191)
T COG5526 110 DALRLE 115 (191)
T ss_pred HHHHHH
T ss_conf 899986
No 24
>TIGR02541 flagell_FlgJ flagellar rod assembly protein/muramidase FlgJ; InterPro: IPR013377 The N-terminal region of this protein acts directly in flagellar rod assembly, while the C-terminal region is a flagellum-specific muramidase (peptidoglycan hydrolase) required for formation of the outer membrane L ring .; GO: 0016798 hydrolase activity acting on glycosyl bonds, 0001539 ciliary or flagellar motility, 0009296 flagellum biogenesis, 0009288 flagellin-based flagellum.
Probab=80.95 E-value=2 Score=23.28 Aligned_cols=104 Identities=19% Similarity=0.246 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCHHHCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
Q ss_conf 01357999998532346999999983899889445231002210102564189999875327531566547899999986
Q gi|254780308|r 100 SSEIIAQGIALKKANSRLLINLKKEYGVPPGILMALWGLETHFGETMGKTPLLSTLATLAYDCRRAKFFTEQFFYALDLV 179 (288)
Q Consensus 100 s~~Ri~~Gr~~~~~~~~~L~~ie~~yGV~~~ii~AiwGiET~yG~~~G~~~vl~aLaTLA~d~RR~~ff~~el~a~l~~~ 179 (288)
++..-..-+.|...-..-=+.+.++-|||+++|+|==.+||.+|+.+-. |.
T Consensus 178 ~~~~~~~~~~FV~~m~~~A~~AAq~~GVp~~l~lAQAALEsGWG~r~iR---------------~a-------------- 228 (332)
T TIGR02541 178 AESVPGHPKSFVASMLPHARKAAQQLGVPPHLILAQAALESGWGRRQIR---------------RA-------------- 228 (332)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCEE---------------CC--------------
T ss_conf 6566776188998642999999987188367899998752265510004---------------36--------------
Q ss_pred HCCCCCHHC---C--CCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCC---CCHHHHHHHHHHHHHHC
Q ss_conf 438777000---3--675235786665522444215367899987887---89888999999999972
Q gi|254780308|r 180 KKGVISSHA---L--GATFGEIGQFQFLPVNVVKYAIDADEDGKIDLV---KSNIDAIASAAKFLAKL 239 (288)
Q Consensus 180 ~~g~~~~~~---~--GS~aGa~G~~QFmPs~~~~yavD~dgdG~~dl~---~~~~Da~aS~AnyL~~~ 239 (288)
+|..+.+. + |||=|-.=-+ |-+-| ||+.---...-| .|..|||-==|.+|..+
T Consensus 229 -dG~~S~NLFGIKA~g~W~G~vv~~--~TtEY----~dG~a~K~~~~FR~YsSY~eaF~DYa~lL~~n 289 (332)
T TIGR02541 229 -DGSPSYNLFGIKASGSWKGKVVEI--MTTEY----VDGVAQKLKEKFRSYSSYEEAFSDYAKLLKNN 289 (332)
T ss_pred -CCCCCCCCCCEECCCCCCCCEEEE--EEEEE----ECCEEEECCCCCCCCCCHHHHHHHHHHHHCCC
T ss_conf -758862434511076678874456--87676----57812311116866444789999999872588
No 25
>COG4764 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=78.84 E-value=1.8 Score=23.48 Aligned_cols=93 Identities=25% Similarity=0.263 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHCCCCCHHHCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCHHCCCCCCC
Q ss_conf 46999999983899889445231002210102564189999875327531566547899999986438777000367523
Q gi|254780308|r 115 SRLLINLKKEYGVPPGILMALWGLETHFGETMGKTPLLSTLATLAYDCRRAKFFTEQFFYALDLVKKGVISSHALGATFG 194 (288)
Q Consensus 115 ~~~L~~ie~~yGV~~~ii~AiwGiET~yG~~~G~~~vl~aLaTLA~d~RR~~ff~~el~a~l~~~~~g~~~~~~~GS~aG 194 (288)
+..-.+.|++||||-.|+.|-+--||.|-.+-- |-|.++ -|-|+=.- -.-
T Consensus 45 ~~aA~~~er~~GvPVpVlMAtiy~ESgFk~~Ar--------------PPRtkl-------------LgfIPW~r---vSs 94 (197)
T COG4764 45 QRAALRTEREYGVPVPVLMATIYTESGFKHNAR--------------PPRTKL-------------LGFIPWKR---VSS 94 (197)
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCC--------------CCCCEE-------------EEEEECCC---CCC
T ss_conf 999999888729971678999887614877789--------------975126-------------76640367---420
Q ss_pred CCCCCCCCHHHHHHCCCCCCC-CCCCCCCCCHHHHHHHHHHHHHHCC
Q ss_conf 578666552244421536789-9987887898889999999999729
Q gi|254780308|r 195 EIGQFQFLPVNVVKYAIDADE-DGKIDLVKSNIDAIASAAKFLAKLG 240 (288)
Q Consensus 195 a~G~~QFmPs~~~~yavD~dg-dG~~dl~~~~~Da~aS~AnyL~~~G 240 (288)
|-|..|-+-.||.+|-..--+ .-.++ +-.|||--++=|-.+.-
T Consensus 95 AyGysQAlDgTWa~YqretG~W~AsRt---dFaDAi~FvgWYh~ks~ 138 (197)
T COG4764 95 AYGYSQALDGTWARYQRETGRWSASRT---DFADAIDFVGWYHQKSQ 138 (197)
T ss_pred HHHHHHHHCCCHHHHHHHHCCCCCCCC---HHHHHHHHHHHHHHHHH
T ss_conf 223667622619999998078642234---07888889999887677
No 26
>PRK13722 lytic transglycosylase; Provisional
Probab=77.74 E-value=1.8 Score=23.49 Aligned_cols=89 Identities=17% Similarity=0.162 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHCCCCCHHHCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCHHCCCCCCC
Q ss_conf 46999999983899889445231002210102564189999875327531566547899999986438777000367523
Q gi|254780308|r 115 SRLLINLKKEYGVPPGILMALWGLETHFGETMGKTPLLSTLATLAYDCRRAKFFTEQFFYALDLVKKGVISSHALGATFG 194 (288)
Q Consensus 115 ~~~L~~ie~~yGV~~~ii~AiwGiET~yG~~~G~~~vl~aLaTLA~d~RR~~ff~~el~a~l~~~~~g~~~~~~~GS~aG 194 (288)
.+-|+.+.+.|||+|.+|-||--+||++--. -+..+.-||+.
T Consensus 20 ~DCfeeAg~~y~IdP~LLrAIA~~ES~~~p~-------------------------------------Ain~N~ngs~D- 61 (169)
T PRK13722 20 TDCFDLAGRDYKIDPDLLRAISWKESRYRVN-------------------------------------AIGINPVTGYG- 61 (169)
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHCCCCCC-------------------------------------CEECCCCCCEE-
T ss_conf 8999999988099999999999987089988-------------------------------------74528999852-
Q ss_pred CCCCCCCCHHH---HHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 57866655224---442153678999878878988899999999997298885897
Q gi|254780308|r 195 EIGQFQFLPVN---VVKYAIDADEDGKIDLVKSNIDAIASAAKFLAKLGWTKCAGY 247 (288)
Q Consensus 195 a~G~~QFmPs~---~~~yavD~dgdG~~dl~~~~~Da~aS~AnyL~~~GW~~g~~~ 247 (288)
+|.||--.+. ..+|+++ +.||-.++.--+-..|-.|+++==+-|-+|
T Consensus 62 -~GLMQINS~hlp~L~~~GI~-----~~~Ll~dpC~Ni~vGAWiLa~~i~~~G~tW 111 (169)
T PRK13722 62 -SGLMQVDSQHFNELARYGIK-----PEHLTTDPCMNIYTGAYYLAIAFKKWGVSW 111 (169)
T ss_pred -EEEEEECHHHHHHHHHCCCC-----HHHHCCCCCCCHHHHHHHHHHHHHHHCCCH
T ss_conf -00055425868999985999-----788464987225588999999999849897
No 27
>PRK13888 conjugal transfer protein TrbN; Provisional
Probab=73.41 E-value=3.6 Score=21.67 Aligned_cols=30 Identities=23% Similarity=0.269 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHCCCC
Q ss_conf 323469999999838998894452310022
Q gi|254780308|r 112 KANSRLLINLKKEYGVPPGILMALWGLETH 141 (288)
Q Consensus 112 ~~~~~~L~~ie~~yGV~~~ii~AiwGiET~ 141 (288)
++--.-+-.+..+|+||+.|++||...|..
T Consensus 12 ~erv~C~i~AA~~Y~VP~~IllAI~~~EgG 41 (206)
T PRK13888 12 QERVVCSISAAVKYEVPANIVLAVAEKEGG 41 (206)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHCC
T ss_conf 466776998898727989999999997279
No 28
>TIGR01751 crot-CoA-red crotonyl-CoA reductase; InterPro: IPR010085 Crotonyl-CoA reductase is responsible for the conversion of crotonyl-CoA to butyryl-CoA. In serine cycle methylotrophic bacteria this enzyme is involved in the process of acetyl-CoA to glyoxylate , . In other bacteria the enzyme is used to produce butyrate for incorporation into polyketides such as tylosin from Streptomyces fradiae and coronatine from Pseudomonas syringae ..
Probab=72.04 E-value=0.96 Score=25.18 Aligned_cols=12 Identities=42% Similarity=1.110 Sum_probs=9.5
Q ss_pred HHHHCCCCCHHH
Q ss_conf 523100221010
Q gi|254780308|r 134 ALWGLETHFGET 145 (288)
Q Consensus 134 AiwGiET~yG~~ 145 (288)
-|||-|||||..
T Consensus 139 rIWGyETn~Gsf 150 (409)
T TIGR01751 139 RIWGYETNYGSF 150 (409)
T ss_pred EEEEEECCCCCC
T ss_conf 387756788541
No 29
>PRK02998 prsA peptidylprolyl isomerase; Reviewed
Probab=71.43 E-value=8.9 Score=19.32 Aligned_cols=63 Identities=13% Similarity=0.048 Sum_probs=34.2
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf 9526899999999999999862046644333444567832089999999999998399989999986
Q gi|254780308|r 1 MSFKKYLLISLLMMVYPMLAQAVTQPKKATTQFICSDTADRFGEWKSAARARAVREGMSPKTAKHLF 67 (288)
Q Consensus 1 M~~k~f~~i~lL~~~~~ll~~a~~~~~~a~~~~~~~~~~~~F~~wl~~l~~~A~~~Gis~~tl~~~f 67 (288)
|+-|+.++.++++++...++.|.+....+....- ...=++|...+++...++-+..-+++++|
T Consensus 1 Mkkkk~~~~~~~~~~~l~LaaC~s~~~vat~kgg----~IT~~e~y~~lk~~~g~~~l~~li~~kvl 63 (283)
T PRK02998 1 MKKKKLFIGTIISCVVLALSACGSSDNVVTSKVG----NITEKELSKELRQKYGESTLYQMVLSKAL 63 (283)
T ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCC----CCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9358999999999999999866899817984399----28399999999999999999999999999
No 30
>PRK10802 peptidoglycan-associated outer membrane lipoprotein; Provisional
Probab=67.22 E-value=9.6 Score=19.12 Aligned_cols=26 Identities=15% Similarity=0.162 Sum_probs=18.1
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 95268999999999999998620466
Q gi|254780308|r 1 MSFKKYLLISLLMMVYPMLAQAVTQP 26 (288)
Q Consensus 1 M~~k~f~~i~lL~~~~~ll~~a~~~~ 26 (288)
|+++++++..++.+...+++.|++.+
T Consensus 1 M~~nk~~K~l~ia~~~l~LaACSS~~ 26 (173)
T PRK10802 1 MQLNKVLKGLMIALPVMAIAACSSNK 26 (173)
T ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 96078999999999999998557999
No 31
>PRK10356 hypothetical protein; Provisional
Probab=63.38 E-value=5.4 Score=20.65 Aligned_cols=15 Identities=13% Similarity=0.200 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHC
Q ss_conf 888999999999972
Q gi|254780308|r 225 NIDAIASAAKFLAKL 239 (288)
Q Consensus 225 ~~Da~aS~AnyL~~~ 239 (288)
-++...|+..|++..
T Consensus 188 F~sl~~SV~aY~~NL 202 (263)
T PRK10356 188 FSSVKESVSAYVTNL 202 (263)
T ss_pred CCCHHHHHHHHHHHH
T ss_conf 899899999999983
No 32
>PRK11063 metQ DL-methionine transporter substrate-binding subunit; Provisional
Probab=61.76 E-value=14 Score=18.15 Aligned_cols=61 Identities=11% Similarity=0.147 Sum_probs=25.7
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHC-CCCHHHH
Q ss_conf 95268999999999999998620466443334445678320899999999999983-9998999
Q gi|254780308|r 1 MSFKKYLLISLLMMVYPMLAQAVTQPKKATTQFICSDTADRFGEWKSAARARAVRE-GMSPKTA 63 (288)
Q Consensus 1 M~~k~f~~i~lL~~~~~ll~~a~~~~~~a~~~~~~~~~~~~F~~wl~~l~~~A~~~-Gis~~tl 63 (288)
|+.|+|..+..|.+.+.+. .|..... ....-...-+.....+++......+.++ |+.-+.+
T Consensus 3 ~~~k~~~~~~~l~~~l~l~-gCg~~~~-~~~~ikVG~~~gp~~ei~e~~~~~~~ek~G~~veiv 64 (271)
T PRK11063 3 FKFKTFAAVGALIGSLALV-GCGQDEK-DPNHIKVGVIVGAEQQVAEVAQKVAKEKYGLDVELV 64 (271)
T ss_pred HHHHHHHHHHHHHHHHHHC-CCCCCCC-CCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEE
T ss_conf 0299999999999999750-0589856-798189984689879999998888886079768999
No 33
>COG3953 SLT domain proteins [General function prediction only]
Probab=60.46 E-value=5 Score=20.83 Aligned_cols=15 Identities=20% Similarity=0.237 Sum_probs=5.2
Q ss_pred CCCCCCHHHHHHCCC
Q ss_conf 866655224442153
Q gi|254780308|r 197 GQFQFLPVNVVKYAI 211 (288)
Q Consensus 197 G~~QFmPs~~~~yav 211 (288)
|.||-+|||+..++.
T Consensus 50 GLmQ~i~stfna~~~ 64 (235)
T COG3953 50 GLMQTIPSTFNANKK 64 (235)
T ss_pred HHHHHHHHHHHHHCC
T ss_conf 599984887743115
No 34
>pfam08566 Pam17 Mitochondrial import protein Pam17. The presequence translocase-associated motor (PAM) drives the completion of preprotein translocation into the mitochondrial matrix. The Pam17 subunit is required for formation of a stable complex between cochaperones Pam16 and Pam18 and promotes the association of Pam16-Pam18 with the presequence translocase. Mitochondria lacking Pam17 are selectively impaired in the import of matrix proteins.
Probab=59.99 E-value=15 Score=17.96 Aligned_cols=103 Identities=12% Similarity=0.095 Sum_probs=67.7
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHH-HHHHHHCCCHHHHHHHHHCCCCCHHHCCCCCHH
Q ss_conf 667779899987640013579999985323-----------46999-999983899889445231002210102564189
Q gi|254780308|r 85 TSPPVSFKDYLDGLSSSEIIAQGIALKKAN-----------SRLLI-NLKKEYGVPPGILMALWGLETHFGETMGKTPLL 152 (288)
Q Consensus 85 ~ef~~t~~~Y~~~~vs~~Ri~~Gr~~~~~~-----------~~~L~-~ie~~yGV~~~ii~AiwGiET~yG~~~G~~~vl 152 (288)
...+++|.+|++-+-+..|++.+-.....- ...++ -+..-+|.||-+++++-.+-...-.++.--.+-
T Consensus 21 ~~~~L~W~~ff~LRk~rRr~~~~~si~t~l~~~~~~~~yl~~~~~D~~~~~I~GlDP~~~~g~~~~a~~~~G~L~GP~iG 100 (174)
T pfam08566 21 ASAKLTWNSFFKLRKQRRRINTGSSVFTALGGAFAGLAYLSTLEIDSPTQQIMGLDPFMVLGLATIACGALGWLLGPFIG 100 (174)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHH
T ss_conf 99878879999999986678557389999998777899863433354203013858899999999997425575163678
Q ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCHHC
Q ss_conf 999875327531566547899999986438777000
Q gi|254780308|r 153 STLATLAYDCRRAKFFTEQFFYALDLVKKGVISSHA 188 (288)
Q Consensus 153 ~aLaTLA~d~RR~~ff~~el~a~l~~~~~g~~~~~~ 188 (288)
+++-.|.+-.....|-.+| ..+|+-+++..+||..
T Consensus 101 ~~vf~l~~r~~~~~~~~Ke-~eF~~rIkknRVdps~ 135 (174)
T pfam08566 101 NAVFRLLNRSQLKQFAVKE-KEFLERIKKNRVDPSS 135 (174)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCCCCCC
T ss_conf 9999997377888888888-9999999973799753
No 35
>pfam05225 HTH_psq helix-turn-helix, Psq domain. This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster. In pipsqueak this domain binds to GAGA sequence.
Probab=59.69 E-value=10 Score=18.98 Aligned_cols=33 Identities=21% Similarity=0.386 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
Q ss_conf 135799999853234699999998389988944
Q gi|254780308|r 101 SEIIAQGIALKKANSRLLINLKKEYGVPPGILM 133 (288)
Q Consensus 101 ~~Ri~~Gr~~~~~~~~~L~~ie~~yGV~~~ii~ 133 (288)
+..+..+.+-++..+--+.++.+.||||...|-
T Consensus 2 ee~l~~Al~av~~g~~S~~kAa~~ygIP~sTL~ 34 (45)
T pfam05225 2 EEDLAEALEAVRNGKMSLRKAARKYGIPRSTLW 34 (45)
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHH
T ss_conf 789999999999199679999999789858999
No 36
>PRK09859 multidrug efflux system protein MdtE; Provisional
Probab=59.46 E-value=11 Score=18.87 Aligned_cols=25 Identities=28% Similarity=0.300 Sum_probs=18.2
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 95268999999999999998620466
Q gi|254780308|r 1 MSFKKYLLISLLMMVYPMLAQAVTQP 26 (288)
Q Consensus 1 M~~k~f~~i~lL~~~~~ll~~a~~~~ 26 (288)
|+-|+++++++|++.+. ++.|...+
T Consensus 1 m~~k~~~li~ll~~~~l-L~gC~~~~ 25 (385)
T PRK09859 1 MNRRRKLLIPLLFCGAM-LTACDDKS 25 (385)
T ss_pred CCCHHHHHHHHHHHHHH-HHCCCCCC
T ss_conf 98206789999999999-95379997
No 37
>PRK01622 OxaA-like protein precursor; Validated
Probab=55.60 E-value=18 Score=17.52 Aligned_cols=115 Identities=17% Similarity=0.132 Sum_probs=55.7
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCHHHHHH-
Q ss_conf 9526899999999999999862046644333444567832089999999999998399989999986087777023332-
Q gi|254780308|r 1 MSFKKYLLISLLMMVYPMLAQAVTQPKKATTQFICSDTADRFGEWKSAARARAVREGMSPKTAKHLFADLEYLDTTIAR- 79 (288)
Q Consensus 1 M~~k~f~~i~lL~~~~~ll~~a~~~~~~a~~~~~~~~~~~~F~~wl~~l~~~A~~~Gis~~tl~~~f~~~~~~~~VI~~- 79 (288)
|+.++.+++++++.+..+++.|.... +..+++.+=|+.|+..--..++.. +...|.+ .|==.+|-.
T Consensus 2 ~k~~~~~l~~~~~~~~~~lsgc~~~~------~~~~~~~g~~~~~~v~p~~~~i~~------~a~~~~g-nyGlaIIl~T 68 (266)
T PRK01622 2 LKSYRAVLISLSLLLVFVLSGCSNAA------PIDAHSDGFFHHYFVYPFSFLIQF------VAHHIHG-SYGIAIIIVT 68 (266)
T ss_pred CHHHHHHHHHHHHHHHHHHHCCCCCC------CCCCCCCCHHHHHHHHHHHHHHHH------HHHHCCC-CHHHHHHHHH
T ss_conf 53889999999999999995468999------988999970799999999999999------9987588-4999999999
Q ss_pred --CCCCCCCCCCCHHHHHHHHHHHH-------HHHHHHHHHHH---------HHHHHHHHHHHHCCCHH
Q ss_conf --02566667779899987640013-------57999998532---------34699999998389988
Q gi|254780308|r 80 --DRKMVTSPPVSFKDYLDGLSSSE-------IIAQGIALKKA---------NSRLLINLKKEYGVPPG 130 (288)
Q Consensus 80 --dr~Qp~ef~~t~~~Y~~~~vs~~-------Ri~~Gr~~~~~---------~~~~L~~ie~~yGV~~~ 130 (288)
.|- - -++++..+|.+.+.... .+++-++.|+. -+.+..++-+++||.|-
T Consensus 69 iivRl-i-l~PL~~kq~ks~~~mq~KM~~lqPel~~Iq~Kyk~~kd~~~q~~~qqEmm~LYke~gvNPl 135 (266)
T PRK01622 69 LIIRS-L-MIPLAVSQYKSQRGMQEKMAVMKPELDKIQAKLKDTKDLEKQKEYQKEMMELYKSGNINPL 135 (266)
T ss_pred HHHHH-H-HHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 99999-9-9870299999999999999982842689999846898889999999999999998499961
No 38
>COG1562 ERG9 Phytoene/squalene synthetase [Lipid metabolism]
Probab=55.13 E-value=18 Score=17.47 Aligned_cols=106 Identities=18% Similarity=0.155 Sum_probs=66.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---CCCHHHHHHHHHCCCCC-HHH-CCCCCHHHHHHHHHC--C
Q ss_conf 7989998764001357999998532346999999983---89988944523100221-010-256418999987532--7
Q gi|254780308|r 89 VSFKDYLDGLSSSEIIAQGIALKKANSRLLINLKKEY---GVPPGILMALWGLETHF-GET-MGKTPLLSTLATLAY--D 161 (288)
Q Consensus 89 ~t~~~Y~~~~vs~~Ri~~Gr~~~~~~~~~L~~ie~~y---GV~~~ii~AiwGiET~y-G~~-~G~~~vl~aLaTLA~--d 161 (288)
.|| |+....-|.++......+-..-..++.|+... .++.+++..+|.-+=.+ ... ..++||+.+|...+- .
T Consensus 22 rtf--~la~~~lp~~~R~av~alYa~~R~~Ddv~D~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~pv~~al~~~~~~~~ 99 (288)
T COG1562 22 RTF--YLAILLLPPEKREAVWALYAFCREADDVVDGVSDPDLPAEILLAWRRELDGDFSGQPASDHPVLAALVEVARRFG 99 (288)
T ss_pred CCH--HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCC
T ss_conf 625--799985799899999999999999989830466644489999999998741346787666879998899998708
Q ss_pred CCHHHHHHHHHHHHHHHH-HC-CCCCHHCC----CCCCCCCCC
Q ss_conf 531566547899999986-43-87770003----675235786
Q gi|254780308|r 162 CRRAKFFTEQFFYALDLV-KK-GVISSHAL----GATFGEIGQ 198 (288)
Q Consensus 162 ~RR~~ff~~el~a~l~~~-~~-g~~~~~~~----GS~aGa~G~ 198 (288)
--+.. -.++++++..- .. ...+.+.+ +.-||++|.
T Consensus 100 ~~~~~--~~~~~da~~~Dl~~~~y~~~~eL~~Yc~~vAg~vG~ 140 (288)
T COG1562 100 LPREA--FPALIDAMRMDLDRTRYLDFEELEEYCYGVAGAVGL 140 (288)
T ss_pred CCHHH--HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 97789--999999999776534146989999999886999999
No 39
>pfam06737 Transglycosylas Transglycosylase-like domain. This family of proteins are very likely to act as transglycosylase enzymes related to pfam00062 and pfam01464. These other families are weakly matched by this family, and include the known active site residues.
Probab=53.85 E-value=19 Score=17.34 Aligned_cols=63 Identities=25% Similarity=0.211 Sum_probs=42.7
Q ss_pred HHHHHHHCCCCC-HHCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 999986438777-000367523578666552244421536789998788789888999999999972988
Q gi|254780308|r 174 YALDLVKKGVIS-SHALGATFGEIGQFQFLPVNVVKYAIDADEDGKIDLVKSNIDAIASAAKFLAKLGWT 242 (288)
Q Consensus 174 a~l~~~~~g~~~-~~~~GS~aGa~G~~QFmPs~~~~yavD~dgdG~~dl~~~~~Da~aS~AnyL~~~GW~ 242 (288)
+.|.-||-|..- .+. | -|..|--||.|+||..|+=..-- +.|. -|+.+=++-+-+.++..||.
T Consensus 8 ~~la~CESgGnw~~nt-g--nG~yGglQf~~~TW~~~Gg~~yA--~p~~-As~~qQi~~A~~l~~~qG~~ 71 (76)
T pfam06737 8 DAIAQCESGGNWAINT-G--NGAYGGLQFSQGTWDAYGGTGYA--SAAL-ASREQQIAAAEKLYAAQGLG 71 (76)
T ss_pred HHHHHHHCCCCCCCCC-C--CCCEEEECCCHHHHHHHCCCCCC--CHHH-CCHHHHHHHHHHHHHHCCCC
T ss_conf 9999976389971337-9--87600233479999982885558--9356-99999999999999974988
No 40
>KOG0957 consensus
Probab=52.85 E-value=20 Score=17.24 Aligned_cols=111 Identities=12% Similarity=0.024 Sum_probs=70.5
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHCCCCCCHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH---------------
Q ss_conf 99999999983999899999860877770233320256666777989998764001357999998---------------
Q gi|254780308|r 46 KSAARARAVREGMSPKTAKHLFADLEYLDTTIARDRKMVTSPPVSFKDYLDGLSSSEIIAQGIAL--------------- 110 (288)
Q Consensus 46 l~~l~~~A~~~Gis~~tl~~~f~~~~~~~~VI~~dr~Qp~ef~~t~~~Y~~~~vs~~Ri~~Gr~~--------------- 110 (288)
...|-.+|-..||+...+.+-=++..++-..-..-..+ |.|...|..|+-.+. .|...-+.+
T Consensus 385 ~rrl~~KAE~mg~s~~~f~~~ead~~~~id~r~k~Hv~-pafs~efi~yy~~rn--~rm~~i~~~m~e~~s~~~~le~eq 461 (707)
T KOG0957 385 FRRLETKAEEMGLSRKEFRQREADPFFNIDLRSKSHVP-PAFSKEFIEYYTKRN--ERMSGISSFMQERDSQIIPLEEEQ 461 (707)
T ss_pred HHHHHHHHHHHCCCHHHHCCCCCCCCCCCCCCCCCCCC-CCCCHHHHHHHHHHH--HHHHHHHHHHHHHHHCCCCHHHHH
T ss_conf 99999888873664765113346854110233346678-620199999998877--888888999998863036303578
Q ss_pred ---HHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCHHHCCCCCHHHHHHHHH
Q ss_conf ---5323469999999838998894452310022101025641899998753
Q gi|254780308|r 111 ---KKANSRLLINLKKEYGVPPGILMALWGLETHFGETMGKTPLLSTLATLA 159 (288)
Q Consensus 111 ---~~~~~~~L~~ie~~yGV~~~ii~AiwGiET~yG~~~G~~~vl~aLaTLA 159 (288)
-.+|.+.++..+..-.-...++-.+-++|+-.|+.+++...|.-++|++
T Consensus 462 ~~l~~ey~~~~e~~~e~k~~~~~L~~~~~~~~~llgqi~~~i~kl~~pl~e~ 513 (707)
T KOG0957 462 LRLSREYLAETEANQEKKSSQKHLVERFSANEELLGQILTSIEKLHQPLTEL 513 (707)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHC
T ss_conf 9999999998888899887678898875539999975500287751525442
No 41
>pfam01839 FG-GAP FG-GAP repeat. This family contains the extracellular repeat that is found in up to seven copies in alpha integrins. This repeat has been predicted to fold into a beta propeller structure. The repeat is called the FG-GAP repeat after two conserved motifs in the repeat. The FG-GAP repeats are found in the N terminus of integrin alpha chains, a region that has been shown to be important for ligand binding. A putative Ca2+ binding motif is found in some of the repeats.
Probab=48.08 E-value=7.3 Score=19.86 Aligned_cols=15 Identities=40% Similarity=0.419 Sum_probs=12.0
Q ss_pred CCCCCCCCCCCCCCC
Q ss_conf 153678999878878
Q gi|254780308|r 209 YAIDADEDGKIDLVK 223 (288)
Q Consensus 209 yavD~dgdG~~dl~~ 223 (288)
-+.|+||||+.||.-
T Consensus 6 ~~~D~nGDG~~Dl~~ 20 (30)
T pfam01839 6 ALGDLNGDGRPDLVV 20 (30)
T ss_pred EEECCCCCCCCCEEE
T ss_conf 740137998867587
No 42
>PRK11397 dacD D-alanyl-D-alanine carboxypeptidase; Provisional
Probab=47.91 E-value=24 Score=16.77 Aligned_cols=32 Identities=19% Similarity=0.303 Sum_probs=20.7
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 95268999999999999998620466443334
Q gi|254780308|r 1 MSFKKYLLISLLMMVYPMLAQAVTQPKKATTQ 32 (288)
Q Consensus 1 M~~k~f~~i~lL~~~~~ll~~a~~~~~~a~~~ 32 (288)
|.+++.++++++++++.+...+........++
T Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 32 (390)
T PRK11397 1 MLLKRRLIIAASLFVFNLSSAFAAENIPFSPQ 32 (390)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 94378999999999999999874045778999
No 43
>COG4193 LytD Beta- N-acetylglucosaminidase [Carbohydrate transport and metabolism]
Probab=45.68 E-value=15 Score=17.93 Aligned_cols=41 Identities=17% Similarity=0.216 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCHH
Q ss_conf 79999985323469999999838998894452310022101
Q gi|254780308|r 104 IAQGIALKKANSRLLINLKKEYGVPPGILMALWGLETHFGE 144 (288)
Q Consensus 104 i~~Gr~~~~~~~~~L~~ie~~yGV~~~ii~AiwGiET~yG~ 144 (288)
+-.|+-.+..|.+.|.+++++|+|-.-+|++-=-+||.-|+
T Consensus 89 lL~gkgiLen~g~aFleAa~~y~IN~~YLiSHALLETGnGt 129 (245)
T COG4193 89 LLVGKGILENHGAAFLEAAEQYHINELYLISHALLETGNGT 129 (245)
T ss_pred HHCCCCHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHCCCCH
T ss_conf 87076144315088999998648302446688898728856
No 44
>PRK12700 flgH flagellar basal body L-ring protein; Reviewed
Probab=43.31 E-value=28 Score=16.34 Aligned_cols=26 Identities=19% Similarity=0.281 Sum_probs=20.7
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 95268999999999999998620466
Q gi|254780308|r 1 MSFKKYLLISLLMMVYPMLAQAVTQP 26 (288)
Q Consensus 1 M~~k~f~~i~lL~~~~~ll~~a~~~~ 26 (288)
|-.|..+++.+++.++.+++.|...+
T Consensus 1 ~~~~t~~Rl~~~~~~~~ll~GCa~~~ 26 (230)
T PRK12700 1 MMLKTVLRLPVCAALLALAAGCAMIP 26 (230)
T ss_pred CCHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 91588999999999999974446899
No 45
>COG4875 Uncharacterized protein conserved in bacteria with a cystatin-like fold [Function unknown]
Probab=39.09 E-value=31 Score=16.08 Aligned_cols=83 Identities=22% Similarity=0.345 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHH---HHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCHHHHHHCCCCCC
Q ss_conf 999999999998---62046644333444567832089999999999998399989999986087777023332025666
Q gi|254780308|r 9 ISLLMMVYPMLA---QAVTQPKKATTQFICSDTADRFGEWKSAARARAVREGMSPKTAKHLFADLEYLDTTIARDRKMVT 85 (288)
Q Consensus 9 i~lL~~~~~ll~---~a~~~~~~a~~~~~~~~~~~~F~~wl~~l~~~A~~~Gis~~tl~~~f~~~~~~~~VI~~dr~Qp~ 85 (288)
++|.++.++.++ .|....+|..+.......++=|+.|-. +...|-...+....-.+...+|.+ .+|+.
T Consensus 7 ~sl~~~a~~v~~~~~~~~~~sap~~s~~t~~~vAaLFdrWN~-----~L~TGdP~kV~anyApDaVLLPT~----Sn~vR 77 (156)
T COG4875 7 LSLSFFAFPVFAGNVKCYKGSAPLISNVTEREVAALFDRWNA-----ALTTGDPNKVAANYAPDAVLLPTM----SNQVR 77 (156)
T ss_pred EEHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH-----HHHCCCHHHHHHHCCCCEEEECCC----CCCCC
T ss_conf 433765345640055213677755468108899999998776-----530498377786338862760022----66655
Q ss_pred CCCCCHHHHHHHHHH
Q ss_conf 677798999876400
Q gi|254780308|r 86 SPPVSFKDYLDGLSS 100 (288)
Q Consensus 86 ef~~t~~~Y~~~~vs 100 (288)
.-+....||+..++.
T Consensus 78 ~s~~ei~DYF~~FLk 92 (156)
T COG4875 78 SSRSEILDYFSHFLK 92 (156)
T ss_pred CCHHHHHHHHHHHHC
T ss_conf 687899999999864
No 46
>PRK09861 cytoplasmic membrane lipoprotein-28; Provisional
Probab=38.45 E-value=33 Score=15.88 Aligned_cols=148 Identities=16% Similarity=0.057 Sum_probs=66.5
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC-CCCCHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHCC-CCCCHHHH
Q ss_conf 9526899999999999999862046644333444-5678320899999999999983-9998999998608-77770233
Q gi|254780308|r 1 MSFKKYLLISLLMMVYPMLAQAVTQPKKATTQFI-CSDTADRFGEWKSAARARAVRE-GMSPKTAKHLFAD-LEYLDTTI 77 (288)
Q Consensus 1 M~~k~f~~i~lL~~~~~ll~~a~~~~~~a~~~~~-~~~~~~~F~~wl~~l~~~A~~~-Gis~~tl~~~f~~-~~~~~~VI 77 (288)
|+++.....+.|+++..++++|..... ..+.. ..-+.....+.+...+..+.++ |+.-+.+. |.+ ++|+...-
T Consensus 3 ~~~~~l~~~a~ll~~~~~l~~C~~~~~--~~k~ikVG~~~~p~~~i~e~~~~~~~ek~G~~leiv~--FsDy~~PN~AL~ 78 (272)
T PRK09861 3 LTTHHLRAGAALLLAGILLAGCDQSSS--DAKHIKVGVINGAEQDVAEVAKKVAKEKYGLDVELVG--FSGSLLPNDATN 78 (272)
T ss_pred CHHHHHHHHHHHHHHHHHHHHCCCCCC--CCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEE--ECCCCCHHHHHH
T ss_conf 109999999999999999874589767--8973899967898699999999888761797689999--468622628976
Q ss_pred HHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCC-CCCHHHCCCCCHHHHHH
Q ss_conf 32025666677798999876400135799999853234699999998389988944523100-22101025641899998
Q gi|254780308|r 78 ARDRKMVTSPPVSFKDYLDGLSSSEIIAQGIALKKANSRLLINLKKEYGVPPGILMALWGLE-THFGETMGKTPLLSTLA 156 (288)
Q Consensus 78 ~~dr~Qp~ef~~t~~~Y~~~~vs~~Ri~~Gr~~~~~~~~~L~~ie~~yGV~~~ii~AiwGiE-T~yG~~~G~~~vl~aLa 156 (288)
+..|+ ..+-+|...|+.-.++.|-. |+++-.+- .-.|-|-.++.-++-|-
T Consensus 79 -----------------------~G~iD---aN~fQH~pyL~~~n~~~g~~---L~~v~~~~~~P~glYS~K~ksl~dlp 129 (272)
T PRK09861 79 -----------------------HGELD---ANVFQHRPFLEQDNQAHGYK---LVAVGNTFVFPMAGYSKKIKTVAQIK 129 (272)
T ss_pred -----------------------CCCCC---CHHHHHHHHHHHHHHHCCCC---EEEEEEEEEEEEEECCCCCCCHHHCC
T ss_conf -----------------------79836---02455799999999986995---79973167830140344659875847
Q ss_pred H---HH--CCCCHHHHHHHHHHHHHHHHHCCCCCHH
Q ss_conf 7---53--2753156654789999998643877700
Q gi|254780308|r 157 T---LA--YDCRRAKFFTEQFFYALDLVKKGVISSH 187 (288)
Q Consensus 157 T---LA--~d~RR~~ff~~el~a~l~~~~~g~~~~~ 187 (288)
. .| -|+- .|-.+++.+-+.|.|...
T Consensus 130 ~Ga~IaIPnDps------N~~RAL~lL~~aGLI~Lk 159 (272)
T PRK09861 130 EGATVAIPNDPT------NLGRALLLLQKEKLITLK 159 (272)
T ss_pred CCCEEEECCCHH------HHHHHHHHHHHCCCEEEC
T ss_conf 999898047812------699999999988978977
No 47
>TIGR01815 TrpE-clade3 anthranilate synthase; InterPro: IPR010112 This entry represents a small clade of anthranilate synthases from alpha proteobacteria and Nostoc (a cyanobacterium). This enzyme is the first step in the pathway for the biosynthesis of tryprophan from chorismate.; GO: 0004049 anthranilate synthase activity, 0000162 tryptophan biosynthetic process.
Probab=37.91 E-value=21 Score=17.07 Aligned_cols=32 Identities=34% Similarity=0.505 Sum_probs=17.3
Q ss_pred HCCCCCCCCCCCCCCCCHHHHH-HHHHHHHHHCC
Q ss_conf 2153678999878878988899-99999999729
Q gi|254780308|r 208 KYAIDADEDGKIDLVKSNIDAI-ASAAKFLAKLG 240 (288)
Q Consensus 208 ~yavD~dgdG~~dl~~~~~Da~-aS~AnyL~~~G 240 (288)
+|--||.- |+.=|-=+++|.| .+.||||++-|
T Consensus 516 kylPdGq~-G~~iLLvDHeDSFVHTLAnY~RqTG 548 (726)
T TIGR01815 516 KYLPDGQE-GKRILLVDHEDSFVHTLANYLRQTG 548 (726)
T ss_pred CCCCCCCC-CCEEEEEECCCCHHHHHHHHHHHCC
T ss_conf 24788625-8779998547543777788876348
No 48
>cd00569 HTH_Hin_like Helix-turn-helix domain of Hin and related proteins, a family of DNA-binding domains unique to bacteria and represented by the Hin protein of Salmonella. The basic HTH domain is a simple fold comprised of three core helices that form a right-handed helical bundle. The principal DNA-protein interface is formed by the third helix, the recognition helix, inserting itself into the major groove of the DNA. A diverse array of HTH domains participate in a variety of functions that depend on their DNA-binding properties. HTH_Hin represents one of the simplest versions of the HTH domains; the characterization of homologous relationships between various sequence-diverse HTH domain families remains difficult. The Hin recombinase induces the site-specific inversion of a chromosomal DNA segment containing a promoter, which controls the alternate expression of two genes by reversibly switching orientation. The Hin recombinase consists of a single polypeptide chain containing a D
Probab=37.55 E-value=30 Score=16.14 Aligned_cols=37 Identities=19% Similarity=0.211 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
Q ss_conf 76400135799999853234699999998389988944
Q gi|254780308|r 96 DGLSSSEIIAQGIALKKANSRLLINLKKEYGVPPGILM 133 (288)
Q Consensus 96 ~~~vs~~Ri~~Gr~~~~~~~~~L~~ie~~yGV~~~ii~ 133 (288)
+...++..+...++++..-. ....|.+.|||.+..|-
T Consensus 3 ~~~lt~~q~~~ar~l~~~G~-~~~~iA~~~GVsr~Tiy 39 (42)
T cd00569 3 PPKLTPEQIEEARRLLAAGE-SVAEIARRLGVSRSTLY 39 (42)
T ss_pred CCCCCHHHHHHHHHHHHCCC-CHHHHHHHHCCCHHHHH
T ss_conf 98699999999999999789-89999999797999998
No 49
>PRK11899 prephenate dehydratase; Provisional
Probab=37.40 E-value=23 Score=16.85 Aligned_cols=25 Identities=16% Similarity=0.101 Sum_probs=16.1
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9899987640013579999985323
Q gi|254780308|r 90 SFKDYLDGLSSSEIIAQGIALKKAN 114 (288)
Q Consensus 90 t~~~Y~~~~vs~~Ri~~Gr~~~~~~ 114 (288)
+..+-......|.-+.+.++++++|
T Consensus 96 ~l~~I~~VySHPqal~QC~~~L~~~ 120 (284)
T PRK11899 96 TLEDIKTVHSHPHALGQCRKIIRAL 120 (284)
T ss_pred CHHHCEEEEEEHHHHHHHHHHHHHC
T ss_conf 8541779997548999999999976
No 50
>PRK11050 manganese transport regulator MntR; Provisional
Probab=37.02 E-value=31 Score=16.06 Aligned_cols=54 Identities=19% Similarity=0.138 Sum_probs=39.3
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH-HHHCCCC
Q ss_conf 777989998764001357999998532346999999983899889445-2310022
Q gi|254780308|r 87 PPVSFKDYLDGLSSSEIIAQGIALKKANSRLLINLKKEYGVPPGILMA-LWGLETH 141 (288)
Q Consensus 87 f~~t~~~Y~~~~vs~~Ri~~Gr~~~~~~~~~L~~ie~~yGV~~~ii~A-iwGiET~ 141 (288)
.-.....|...++|+.=.+.+...+++|+-+..=. ...|||+++.-. ==|||-.
T Consensus 82 GlV~~~~Y~~I~LT~~G~~~A~~i~~RHrile~FL-~~LGv~~e~A~~dAe~iEH~ 136 (155)
T PRK11050 82 GLVEMRPYRGVFLTPEGEKLAQESRERHQIVENFL-LALGVSPETARRDAEGIEHH 136 (155)
T ss_pred CCEEECCCCCEEECHHHHHHHHHHHHHHHHHHHHH-HHHCCCHHHHHHHHHHHCCC
T ss_conf 99887189884689779999999999999999999-99499999999999981533
No 51
>PRK09436 thrA bifunctional aspartokinase I/homeserine dehydrogenase I; Provisional
Probab=36.51 E-value=36 Score=15.69 Aligned_cols=109 Identities=16% Similarity=0.218 Sum_probs=61.3
Q ss_pred CCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCHHHHHHCCCCCCCCCCCHHHHHHH---HHHHHHHHHHHHHHHH
Q ss_conf 7832089999999999998399989999986087777023332025666677798999876---4001357999998532
Q gi|254780308|r 37 DTADRFGEWKSAARARAVREGMSPKTAKHLFADLEYLDTTIARDRKMVTSPPVSFKDYLDG---LSSSEIIAQGIALKKA 113 (288)
Q Consensus 37 ~~~~~F~~wl~~l~~~A~~~Gis~~tl~~~f~~~~~~~~VI~~dr~Qp~ef~~t~~~Y~~~---~vs~~Ri~~Gr~~~~~ 113 (288)
..+-+.+.|...+.+.. ...+...+-..+....+...|+ -|-...++....+.+|+++ .|++.++.... -+ +
T Consensus 513 ~~Gi~l~~w~~~l~~~~--~~~~~~~~~~~~~~~~~~n~v~-vD~Tas~~~~~~Y~~~l~~g~~vvt~NK~a~s~-~~-~ 587 (817)
T PRK09436 513 EHGIDLDNWREELAEAG--EPFDLDRLIRLVKEYHLLNPVI-VDCTSSAAVADQYADFLAAGFHVVTPNKKANTS-SM-A 587 (817)
T ss_pred CCCCCHHHHHHHHHHCC--CCCCHHHHHHHHHHCCCCCCEE-EECCCCHHHHHHHHHHHHCCCEEECCCCCCCCC-CH-H
T ss_conf 89989899999998567--8777999999999638988489-988887688999999998599699268646777-89-9
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHCCCCCHHHCCCCCHHHHHHHHHC
Q ss_conf 34699999998389988944523100221010256418999987532
Q gi|254780308|r 114 NSRLLINLKKEYGVPPGILMALWGLETHFGETMGKTPLLSTLATLAY 160 (288)
Q Consensus 114 ~~~~L~~ie~~yGV~~~ii~AiwGiET~yG~~~G~~~vl~aLaTLA~ 160 (288)
+...|.+..+++|++ |--||+-|. -.||++.|-.|-.
T Consensus 588 ~y~~l~~~~~~~~~~-------~lyEatVga---GlPii~tl~~l~~ 624 (817)
T PRK09436 588 YYHQLREAARKSRRK-------FLYETNVGA---GLPVIENLQNLLN 624 (817)
T ss_pred HHHHHHHHHHHCCCE-------EEEECCCCC---CCCHHHHHHHHHH
T ss_conf 999999999864985-------875042046---8647999999986
No 52
>pfam07172 GRP Glycine rich protein family. This family of proteins includes several glycine rich proteins as well as two nodulins 16 and 24. The family also contains proteins that are induced in response to various stresses.
Probab=34.78 E-value=23 Score=16.82 Aligned_cols=24 Identities=29% Similarity=0.477 Sum_probs=13.6
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 952689999999999999986204
Q gi|254780308|r 1 MSFKKYLLISLLMMVYPMLAQAVT 24 (288)
Q Consensus 1 M~~k~f~~i~lL~~~~~ll~~a~~ 24 (288)
|--|.++++.+++.+++++++..+
T Consensus 1 MaSKa~llLglllA~~lLIsSeva 24 (91)
T pfam07172 1 MASKALLLLGLLLAAVLLISSEVA 24 (91)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 950579999999999999999999
No 53
>COG0077 PheA Prephenate dehydratase [Amino acid transport and metabolism]
Probab=33.99 E-value=28 Score=16.32 Aligned_cols=27 Identities=19% Similarity=0.177 Sum_probs=18.6
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 798999876400135799999853234
Q gi|254780308|r 89 VSFKDYLDGLSSSEIIAQGIALKKANS 115 (288)
Q Consensus 89 ~t~~~Y~~~~vs~~Ri~~Gr~~~~~~~ 115 (288)
.++.+-......|.-+.+.++++++|.
T Consensus 94 ~~l~~Ik~vySHpqalaQc~~~L~~~~ 120 (279)
T COG0077 94 VDLEEIKTVYSHPQALAQCRKFLRAHL 120 (279)
T ss_pred CCHHHCEEEEECCHHHHHHHHHHHHCC
T ss_conf 886657588747289999999999728
No 54
>PRK01178 rps24e 30S ribosomal protein S24e; Reviewed
Probab=33.02 E-value=16 Score=17.83 Aligned_cols=31 Identities=10% Similarity=0.158 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHCCCCCHHHC
Q ss_conf 46999999983899889445231002210102
Q gi|254780308|r 115 SRLLINLKKEYGVPPGILMALWGLETHFGETM 146 (288)
Q Consensus 115 ~~~L~~ie~~yGV~~~ii~AiwGiET~yG~~~ 146 (288)
..+-+++.+.||++++.|+ |-++.|.||...
T Consensus 34 ~ei~~kla~~~~~~~~~vv-v~~~~t~fG~~~ 64 (102)
T PRK01178 34 KDVKKKLAAMLNADKELVV-VDKIDTEYGMGE 64 (102)
T ss_pred HHHHHHHHHHHCCCCCEEE-EECCCCCCCCCE
T ss_conf 9999999998788988799-973672689970
No 55
>PRK09589 celA 6-phospho-beta-glucosidase; Reviewed
Probab=30.96 E-value=44 Score=15.14 Aligned_cols=109 Identities=21% Similarity=0.201 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHCCCCCHHHCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHC-CCCCH-----HC
Q ss_conf 4699999998389988944523100221010256418999987532753156654789999998643-87770-----00
Q gi|254780308|r 115 SRLLINLKKEYGVPPGILMALWGLETHFGETMGKTPLLSTLATLAYDCRRAKFFTEQFFYALDLVKK-GVISS-----HA 188 (288)
Q Consensus 115 ~~~L~~ie~~yGV~~~ii~AiwGiET~yG~~~G~~~vl~aLaTLA~d~RR~~ff~~el~a~l~~~~~-g~~~~-----~~ 188 (288)
+.+|+.+.++|++| |+=.|..+|.. +..+.=.+ -.|..|.+|.+..|.++++-+.+ |.--. ..
T Consensus 359 ~~~l~~~~~~y~~P------i~ITENG~~~~----d~~~~~~~-i~D~~Ri~yl~~hL~~l~kAi~edGv~V~GY~~WSl 427 (479)
T PRK09589 359 RYSLNWFWDHYQLP------LFIVENGFGAV----DQRQADGT-VNDHYRIDYLAAHIREMKKAVVEDGVDLMGYTPWGC 427 (479)
T ss_pred HHHHHHHHHHHCCC------EEEEECCCCCC----CCCCCCCC-CCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHH
T ss_conf 99999999972898------89982587767----77676786-177889999999999999999977998697610101
Q ss_pred CC--CCC-CCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCC
Q ss_conf 36--752-35786665522444215367899987887898889999999999729
Q gi|254780308|r 189 LG--ATF-GEIGQFQFLPVNVVKYAIDADEDGKIDLVKSNIDAIASAAKFLAKLG 240 (288)
Q Consensus 189 ~G--S~a-Ga~G~~QFmPs~~~~yavD~dgdG~~dl~~~~~Da~aS~AnyL~~~G 240 (288)
+= +|+ |.+. .-|=-|.||++.+++..+-..+-+...=-...++.+|
T Consensus 428 ~DNfEW~~G~y~------~RFGL~~VD~~~~~~~t~~R~pK~S~~~y~~ii~~ng 476 (479)
T PRK09589 428 IDLVSAGTGEMK------KRYGFIYVDKDNEGKGTLERSRKKSFYWYRDVIANNG 476 (479)
T ss_pred HHHHCCCCCCCC------CCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHCC
T ss_conf 376451548736------7556399889899887856110468999999999678
No 56
>PRK09466 metL bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional
Probab=29.56 E-value=46 Score=14.99 Aligned_cols=109 Identities=12% Similarity=0.094 Sum_probs=63.2
Q ss_pred CCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCHHHHHHCCCCCCCCCCCHHHHHHH---HHHHHHHHHHHHHHH
Q ss_conf 67832089999999999998399989999986087777023332025666677798999876---400135799999853
Q gi|254780308|r 36 SDTADRFGEWKSAARARAVREGMSPKTAKHLFADLEYLDTTIARDRKMVTSPPVSFKDYLDG---LSSSEIIAQGIALKK 112 (288)
Q Consensus 36 ~~~~~~F~~wl~~l~~~A~~~Gis~~tl~~~f~~~~~~~~VI~~dr~Qp~ef~~t~~~Y~~~---~vs~~Ri~~Gr~~~~ 112 (288)
...+.+.+.|...+.+.+ ...+.+.+-..+....+...|+- |-....+....+.+++++ .|++.++... --.
T Consensus 506 ~~~Gi~l~~w~~~l~~~~--~~~~~~~~~~~~~~~~~~~~v~v-D~t~s~~~~~~y~~~l~~g~~vvt~Nk~a~s--~~~ 580 (810)
T PRK09466 506 NYDGIDASRALAFFDDEA--VEQDEESLFLWLRAHPYDELVVL-DVTASEQLALQYPDFASHGFHVISANKLAGS--SPS 580 (810)
T ss_pred CCCCCCHHHHHHHHHHCC--CCCCHHHHHHHHHHCCCCCCEEE-ECCCCHHHHHHHHHHHHHCCEEECCCCCCCC--CCH
T ss_conf 688989899999876526--76769999999985388887799-7574788999999999819879825630468--779
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHCCCCCHHHCCCCCHHHHHHHHH
Q ss_conf 23469999999838998894452310022101025641899998753
Q gi|254780308|r 113 ANSRLLINLKKEYGVPPGILMALWGLETHFGETMGKTPLLSTLATLA 159 (288)
Q Consensus 113 ~~~~~L~~ie~~yGV~~~ii~AiwGiET~yG~~~G~~~vl~aLaTLA 159 (288)
++...|++..+++|++ |--||+-|. -.||++.|-.|-
T Consensus 581 ~~y~~l~~~~~~~~~~-------~~yEttVga---GlPii~tl~~L~ 617 (810)
T PRK09466 581 PFYRQIKDAFAKTGRH-------WLYNATVGA---GLPINHTVRDLR 617 (810)
T ss_pred HHHHHHHHHHHHHCCE-------EEEECCCCC---CCCHHHHHHHHH
T ss_conf 9999999999970975-------886043246---853699999998
No 57
>pfam11588 DUF3243 Protein of unknown function (DUF3243). This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=29.41 E-value=47 Score=14.98 Aligned_cols=28 Identities=29% Similarity=0.446 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHH---HHHHCCCCHHHHHHHH
Q ss_conf 208999999999---9998399989999986
Q gi|254780308|r 40 DRFGEWKSAARA---RAVREGMSPKTAKHLF 67 (288)
Q Consensus 40 ~~F~~wl~~l~~---~A~~~Gis~~tl~~~f 67 (288)
++|+.|+..+.+ .|.+.|+++.++..+=
T Consensus 5 ~n~d~wK~~Lg~rv~~a~~~Gm~ee~i~~~A 35 (81)
T pfam11588 5 ENWDKWKDFLGDRVNLAKKIGMSEETISKLA 35 (81)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
T ss_conf 6299999999999999998599889999999
No 58
>PTZ00102 disulphide isomerase; Provisional
Probab=28.23 E-value=49 Score=14.85 Aligned_cols=48 Identities=15% Similarity=0.207 Sum_probs=24.7
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 952689999999999999986204664433344456783208999999
Q gi|254780308|r 1 MSFKKYLLISLLMMVYPMLAQAVTQPKKATTQFICSDTADRFGEWKSA 48 (288)
Q Consensus 1 M~~k~f~~i~lL~~~~~ll~~a~~~~~~a~~~~~~~~~~~~F~~wl~~ 48 (288)
|.++.-+.++++++...+.+...+............-+.++|++.+.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~Vl~Lt~~nF~~~i~~ 49 (479)
T PTZ00102 2 MGFRSLLSLFLLLISLFFSSFFRSHEDLFENEHVTVLTDGTFDKFITK 49 (479)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECHHHHHHHHHH
T ss_conf 008999999999999998887531467656688189164408999963
No 59
>pfam09418 DUF2009 Protein of unknown function (DUF2009). This is a eukaryotic family of proteins with unknown function.
Probab=27.55 E-value=37 Score=15.62 Aligned_cols=18 Identities=28% Similarity=0.361 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHC
Q ss_conf 985323469999999838
Q gi|254780308|r 109 ALKKANSRLLINLKKEYG 126 (288)
Q Consensus 109 ~~~~~~~~~L~~ie~~yG 126 (288)
+..++-+...+.+.++|+
T Consensus 174 ~~ik~Ke~Aie~L~~kYs 191 (458)
T pfam09418 174 RAIKQKERAVETLAKKYS 191 (458)
T ss_pred HHHHHHHHHHHHHHHHHC
T ss_conf 999999999999999856
No 60
>KOG1168 consensus
Probab=25.95 E-value=54 Score=14.60 Aligned_cols=34 Identities=12% Similarity=0.273 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCC
Q ss_conf 2089999999999998399989999986087777
Q gi|254780308|r 40 DRFGEWKSAARARAVREGMSPKTAKHLFADLEYL 73 (288)
Q Consensus 40 ~~F~~wl~~l~~~A~~~Gis~~tl~~~f~~~~~~ 73 (288)
-..++|-+.|+|+-++.||.++.|-++++++|..
T Consensus 217 ReLEaFAErFKQRRIKLGVTQADVG~ALAnLKiP 250 (385)
T KOG1168 217 RELEAFAERFKQRRIKLGVTQADVGKALANLKIP 250 (385)
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCC
T ss_conf 9999999998754543064277778898727688
No 61
>PRK08270 anaerobic ribonucleoside triphosphate reductase; Provisional
Probab=25.57 E-value=55 Score=14.56 Aligned_cols=50 Identities=8% Similarity=0.071 Sum_probs=35.4
Q ss_pred CHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCHHHHHHCCCCCCCCCCC
Q ss_conf 83208999999999999839998999998608777702333202566667779
Q gi|254780308|r 38 TADRFGEWKSAARARAVREGMSPKTAKHLFADLEYLDTTIARDRKMVTSPPVS 90 (288)
Q Consensus 38 ~~~~F~~wl~~l~~~A~~~Gis~~tl~~~f~~~~~~~~VI~~dr~Qp~ef~~t 90 (288)
+-+.|+.+++.+.. ..+++...+.++++.+.|+=.+..+-..|.|+-..+
T Consensus 222 a~~~fD~~LAPyv~---~d~l~~~eikqa~Q~fvy~lNt~sr~ggQtPFt~i~ 271 (681)
T PRK08270 222 AFSSFDTYLAPFVR---KDNLSYAEVKQALQEFVFNLNVPSRWGFQTPFTNLT 271 (681)
T ss_pred EHHHHHHHHCCHHH---HCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEE
T ss_conf 38768887200462---146989999999999999854656678978815778
No 62
>PRK00022 lolB outer membrane lipoprotein LolB; Provisional
Probab=24.76 E-value=57 Score=14.47 Aligned_cols=19 Identities=26% Similarity=0.392 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHCCCCC
Q ss_conf 9999999999986204664
Q gi|254780308|r 9 ISLLMMVYPMLAQAVTQPK 27 (288)
Q Consensus 9 i~lL~~~~~ll~~a~~~~~ 27 (288)
++++.+++.+++.|.+.|.
T Consensus 5 ~~~l~~~~llLsgCat~p~ 23 (203)
T PRK00022 5 LRLLPLAALLLAGCASLPP 23 (203)
T ss_pred HHHHHHHHHHHHHCCCCCC
T ss_conf 8999999999866148999
No 63
>PRK05371 x-prolyl-dipeptidyl aminopeptidase; Provisional
Probab=23.96 E-value=56 Score=14.49 Aligned_cols=45 Identities=31% Similarity=0.442 Sum_probs=25.5
Q ss_pred HHCCCCCHHCCCCCCCCCCCCCCCHHH------HHHCCCCCCCCCCCCCCC
Q ss_conf 643877700036752357866655224------442153678999878878
Q gi|254780308|r 179 VKKGVISSHALGATFGEIGQFQFLPVN------VVKYAIDADEDGKIDLVK 223 (288)
Q Consensus 179 ~~~g~~~~~~~GS~aGa~G~~QFmPs~------~~~yavD~dgdG~~dl~~ 223 (288)
+.+|.+..+..=-.-...-++-|=++. |..--+|-|+||+.|+.+
T Consensus 138 ~~~G~~~~~~~p~ffNGks~pvFd~~~~IREvVyVET~~DTD~DGk~Dlv~ 188 (769)
T PRK05371 138 VSQGYLPGDNKPHFFNGKSLPVFSTSQLIREVVYVETPVDTDQDGKLDLVK 188 (769)
T ss_pred HHCCCCCCCCCCEEECCCCCCCCCHHHEEEEEEEEECCCCCCCCCCCCEEE
T ss_conf 657876788962677895224226537247789993777667899841689
No 64
>pfam00623 RNA_pol_Rpb1_2 RNA polymerase Rpb1, domain 2. RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). This domain, domain 2, contains the active site. The invariant motif -NADFDGD- binds the active site magnesium ion.
Probab=23.55 E-value=27 Score=16.46 Aligned_cols=23 Identities=26% Similarity=0.405 Sum_probs=18.6
Q ss_pred CCCCHHHHHHCCCCCCCCCCCCCC
Q ss_conf 665522444215367899987887
Q gi|254780308|r 199 FQFLPVNVVKYAIDADEDGKIDLV 222 (288)
Q Consensus 199 ~QFmPs~~~~yavD~dgdG~~dl~ 222 (288)
.++-|+.-.-|-.|||||- -+++
T Consensus 126 irlnp~vc~~fNADFDGDe-Mnih 148 (165)
T pfam00623 126 IRLNPSVCSPYNADFDGDE-MNLH 148 (165)
T ss_pred EEECCCCCCCCCCCCCCCE-EEEE
T ss_conf 5877654677058878724-7876
No 65
>TIGR00565 trpE_proteo anthranilate synthase component I; InterPro: IPR005257 This family represents anthranilate/para-aminobenzoate synthase component I from proteobacteria and actinobacteria. This enzyme resembles some other chorismate-binding enzymes, including para-aminobenzoate synthase (pabB) and isochorismate synthase. There is a fairly deep split between two sets, seen in the pattern of gaps as well as in amino acid sequence differences. This group includes proteobacteria such as Escherichia coli and Helicobacter pylori but also the Gram-positive organism Corynebacterium glutamicum. The second group (IPR005256 from INTERPRO) includes eukaryotes, archaea, and most other bacterial lineages; sequences from the second group may resemble pabB more closely than other trpE from this group. ; GO: 0004049 anthranilate synthase activity, 0009058 biosynthetic process.
Probab=23.48 E-value=42 Score=15.27 Aligned_cols=25 Identities=20% Similarity=0.291 Sum_probs=13.3
Q ss_pred HHHHHHHHCCCCCHHCCCCCCCCCCCC
Q ss_conf 999998643877700036752357866
Q gi|254780308|r 173 FYALDLVKKGVISSHALGATFGEIGQF 199 (288)
Q Consensus 173 ~a~l~~~~~g~~~~~~~GS~aGa~G~~ 199 (288)
+.||+++.+=. ..-+|||.||+|+-
T Consensus 422 i~A~qLIyq~E--~qrRgSYGGaVGYl 446 (505)
T TIGR00565 422 IKAMQLIYQLE--NQRRGSYGGAVGYL 446 (505)
T ss_pred HHHHHHHHHHH--CCCCCCCCCCCEEE
T ss_conf 89999999971--68015667642014
No 66
>pfam09743 DUF2042 Uncharacterized conserved protein (DUF2042). This entry is the conserved N-terminal 300 residues of a group of proteins found from protozoa to Humans. The function is unknown.
Probab=23.46 E-value=60 Score=14.32 Aligned_cols=121 Identities=17% Similarity=0.238 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHHHHCC-------------CCHHHHHHHHCCCCCCHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 8999999999999839-------------998999998608777702333202566667779899987640013579999
Q gi|254780308|r 42 FGEWKSAARARAVREG-------------MSPKTAKHLFADLEYLDTTIARDRKMVTSPPVSFKDYLDGLSSSEIIAQGI 108 (288)
Q Consensus 42 F~~wl~~l~~~A~~~G-------------is~~tl~~~f~~~~~~~~VI~~dr~Qp~ef~~t~~~Y~~~~vs~~Ri~~Gr 108 (288)
.+.-..+++.+...+| |+...+++....+.-.++-+.+. +.+-.+ .+|+.+.+.+- ..
T Consensus 53 ~~qL~~EI~dEl~~~gGRinl~dL~~~LnVd~~hIE~~~~~i~~~~~~~~l~--~geLit---~~Yld~iaeeI----ne 123 (272)
T pfam09743 53 PDQLEREIKDELLANGGRINVVDLAKILNVDLDHIERQVEDIVKEDPDLTLV--QGELIT---DDYLDRLAEEI----NE 123 (272)
T ss_pred HHHHHHHHHHHHHHCCCCEEHHHHHHHCCCCHHHHHHHHHHHHCCCCCEEEE--CCEECC---HHHHHHHHHHH----HH
T ss_conf 9999999999999829955699988761889999999999986079863988--577624---58999999999----99
Q ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHH-HHHCCCCCHH-HCCCCCHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 98532346999999983899889445-2310022101-025641899998753275315665478999
Q gi|254780308|r 109 ALKKANSRLLINLKKEYGVPPGILMA-LWGLETHFGE-TMGKTPLLSTLATLAYDCRRAKFFTEQFFY 174 (288)
Q Consensus 109 ~~~~~~~~~L~~ie~~yGV~~~ii~A-iwGiET~yG~-~~G~~~vl~aLaTLA~d~RR~~ff~~el~a 174 (288)
.+-....-.+..+.++|..|.+++.. +.. .+-|+ ..|..+- ++|.|.+|-.|...-.+.=|.|
T Consensus 124 ~Lqe~G~i~i~eLa~~~dLp~dfl~~~l~~--~~lg~~I~g~~d~-~~lyT~~yv~r~~a~iRG~l~a 188 (272)
T pfam09743 124 KLQECGQVAIAELAKQYDLPSDFLKSLLLE--ARLGSIIKGVLDG-GVLYTPTYVARQKAVIRGALLA 188 (272)
T ss_pred HHHHCCCCHHHHHHHHHCCCHHHHHHHHHH--HHCCCEEEEEEEC-CEEECHHHHHHHHHHHHHHHHH
T ss_conf 999829567999998519839999999999--8367716898509-9987299999999999999975
No 67
>COG3561 Phage anti-repressor protein [Transcription]
Probab=23.26 E-value=54 Score=14.62 Aligned_cols=35 Identities=11% Similarity=0.191 Sum_probs=23.1
Q ss_pred CCHHHHHHHHHCCCCCHHHCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 9988944523100221010256418999987532753156654789999998643877
Q gi|254780308|r 127 VPPGILMALWGLETHFGETMGKTPLLSTLATLAYDCRRAKFFTEQFFYALDLVKKGVI 184 (288)
Q Consensus 127 V~~~ii~AiwGiET~yG~~~G~~~vl~aLaTLA~d~RR~~ff~~el~a~l~~~~~g~~ 184 (288)
|..+=|+.+|++.|+| ++||+ |++..+.+++..+.
T Consensus 13 vsareLh~~l~~~tr~----------------------s~wf~-er~~~ygfien~d~ 47 (110)
T COG3561 13 VSARELHWFLDVKTRY----------------------SAWFR-ERISEYGFIENIDY 47 (110)
T ss_pred CCHHHHHHHHHCCCHH----------------------HHHHH-HHHHHHCCEECCCE
T ss_conf 0288899998015558----------------------99999-98876432110426
No 68
>PRK11669 pbpG D-alanyl-D-alanine endopeptidase; Provisional
Probab=22.70 E-value=62 Score=14.23 Aligned_cols=21 Identities=29% Similarity=0.289 Sum_probs=11.7
Q ss_pred CCHHHHHHHHHHHHHHHHHHH
Q ss_conf 952689999999999999986
Q gi|254780308|r 1 MSFKKYLLISLLMMVYPMLAQ 21 (288)
Q Consensus 1 M~~k~f~~i~lL~~~~~ll~~ 21 (288)
|++|..++.+++++..+.+.+
T Consensus 1 mk~~~~~~~~~~~~~~~~~~~ 21 (308)
T PRK11669 1 MKIRVSLLSLLLLLAGVPVAP 21 (308)
T ss_pred CCHHHHHHHHHHHHHHHCCCC
T ss_conf 932699999999997400365
No 69
>COG5052 YOP1 Protein involved in membrane traffic [Intracellular trafficking and secretion]
Probab=22.48 E-value=63 Score=14.20 Aligned_cols=23 Identities=17% Similarity=0.080 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHH
Q ss_conf 46999999983899889445231
Q gi|254780308|r 115 SRLLINLKKEYGVPPGILMALWG 137 (288)
Q Consensus 115 ~~~L~~ie~~yGV~~~ii~AiwG 137 (288)
-..|+.+|+.|++++.++++..+
T Consensus 22 ~piL~~ie~~~~~~k~Y~~~~as 44 (186)
T COG5052 22 FPILREIENLYNRYKKYFMAGAS 44 (186)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHH
T ss_conf 37899999984764245777778
No 70
>pfam07836 DmpG_comm DmpG-like communication domain. This domain is found towards the C-terminal region of various aldolase enzymes. It consists of five alpha-helices, four of which form an antiparallel helical bundle that plugs the C-terminus of the N-terminal TIM barrel domain. The communication domain is thought to play an important role in the heterodimerization of the enzyme.
Probab=22.21 E-value=64 Score=14.16 Aligned_cols=41 Identities=17% Similarity=0.207 Sum_probs=25.2
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHCCCHHHHHHHHHCC
Q ss_conf 00135799999-853234699999998389988944523100
Q gi|254780308|r 99 SSSEIIAQGIA-LKKANSRLLINLKKEYGVPPGILMALWGLE 139 (288)
Q Consensus 99 vs~~Ri~~Gr~-~~~~~~~~L~~ie~~yGV~~~ii~AiwGiE 139 (288)
++...+..|-+ .|.-+..--+++.++||||++-|+-=.|--
T Consensus 5 vdr~sl~~GyaGVySsFl~ha~raa~~ygvd~rdil~elGrR 46 (66)
T pfam07836 5 VDRDSLTLGYAGVYSSFLLHAERAAERYGVDPRDILVELGRR 46 (66)
T ss_pred ECHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCC
T ss_conf 234789888899998769999999999197999999996112
No 71
>KOG4061 consensus
Probab=21.63 E-value=66 Score=14.09 Aligned_cols=36 Identities=25% Similarity=0.384 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCC
Q ss_conf 799999853234699999998389988944523100
Q gi|254780308|r 104 IAQGIALKKANSRLLINLKKEYGVPPGILMALWGLE 139 (288)
Q Consensus 104 i~~Gr~~~~~~~~~L~~ie~~yGV~~~ii~AiwGiE 139 (288)
|+.-=..=++|.+.|++.-.+..|+|.++.-+|.+-
T Consensus 83 i~hmWdqEk~Hl~tf~~l~~k~rVrpT~l~P~w~va 118 (217)
T KOG4061 83 IKHMWDQEKEHLKTFENLALKHRVRPTVLTPLWNVA 118 (217)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
T ss_conf 999899889999999999997358940331688888
No 72
>TIGR02630 xylose_isom_A xylose isomerase; InterPro: IPR013452 Xylose isomerase (5.3.1.5 from EC) is an enzyme which interconverts D-xylose and D-xylulose.; GO: 0009045 xylose isomerase activity.
Probab=21.44 E-value=66 Score=14.07 Aligned_cols=57 Identities=26% Similarity=0.350 Sum_probs=42.8
Q ss_pred CHHHCCC---------CCHHHHHHHHHC----------------C--CCHHHH---------------HHHHHHHHHHHH
Q ss_conf 1010256---------418999987532----------------7--531566---------------547899999986
Q gi|254780308|r 142 FGETMGK---------TPLLSTLATLAY----------------D--CRRAKF---------------FTEQFFYALDLV 179 (288)
Q Consensus 142 yG~~~G~---------~~vl~aLaTLA~----------------d--~RR~~f---------------f~~el~a~l~~~ 179 (288)
--.++|+ ||+----+|||+ | .||..| |-.=|..|.+|+
T Consensus 293 iDAN~GD~LlGWDTDqFPtd~y~~tlaMyevl~~GGl~~GGlNFDAKvRR~S~~~~DLf~aHIaGMDtfA~GLk~A~~l~ 372 (437)
T TIGR02630 293 IDANQGDLLLGWDTDQFPTDVYETTLAMYEVLKNGGLTTGGLNFDAKVRRESFDPEDLFLAHIAGMDTFARGLKVAAKLL 372 (437)
T ss_pred EECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 00047887556551147676789999999999717866888665435576788533577676889999999999999987
Q ss_pred HCCCCCH--HCC-CCCCCCCCC
Q ss_conf 4387770--003-675235786
Q gi|254780308|r 180 KKGVISS--HAL-GATFGEIGQ 198 (288)
Q Consensus 180 ~~g~~~~--~~~-GS~aGa~G~ 198 (288)
+.|-++. +.+ -||.+.+|.
T Consensus 373 ~dg~L~~~~~~RY~s~~~g~G~ 394 (437)
T TIGR02630 373 EDGFLDKIVAERYSSFNSGIGA 394 (437)
T ss_pred HCCCHHHHHHHHCCCCCCHHHH
T ss_conf 2484226899751442513468
No 73
>COG0349 Rnd Ribonuclease D [Translation, ribosomal structure and biogenesis]
Probab=21.16 E-value=67 Score=14.03 Aligned_cols=18 Identities=33% Similarity=0.399 Sum_probs=7.7
Q ss_pred CCCCHHHHHHHHCCCCCC
Q ss_conf 399989999986087777
Q gi|254780308|r 56 EGMSPKTAKHLFADLEYL 73 (288)
Q Consensus 56 ~Gis~~tl~~~f~~~~~~ 73 (288)
+.+|++.++.+..++.|+
T Consensus 138 RPLs~~Ql~YAa~DV~yL 155 (361)
T COG0349 138 RPLSEAQLEYAAADVEYL 155 (361)
T ss_pred CCCCHHHHHHHHHHHHHH
T ss_conf 799999999999999999
No 74
>COG4261 Predicted acyltransferase [General function prediction only]
Probab=20.85 E-value=43 Score=15.22 Aligned_cols=18 Identities=28% Similarity=0.403 Sum_probs=16.3
Q ss_pred CCHHHCCCCCHHHHHHHH
Q ss_conf 210102564189999875
Q gi|254780308|r 141 HFGETMGKTPLLSTLATL 158 (288)
Q Consensus 141 ~yG~~~G~~~vl~aLaTL 158 (288)
-+|.++|++.+.++|+|-
T Consensus 119 l~gsHLGsfEv~RALatt 136 (309)
T COG4261 119 LLGSHLGSFEVCRALATT 136 (309)
T ss_pred EEHHHCCCHHHHHHHHHC
T ss_conf 732103629999999731
No 75
>smart00663 RPOLA_N RNA polymerase I subunit A N-terminus.
Probab=20.34 E-value=33 Score=15.90 Aligned_cols=24 Identities=25% Similarity=0.427 Sum_probs=18.9
Q ss_pred CCCCCHHHHHHCCCCCCCCCCCCCC
Q ss_conf 6665522444215367899987887
Q gi|254780308|r 198 QFQFLPVNVVKYAIDADEDGKIDLV 222 (288)
Q Consensus 198 ~~QFmPs~~~~yavD~dgdG~~dl~ 222 (288)
-.++-|+..--|..|||||- -+++
T Consensus 230 tir~n~~~c~~~NADFDGDe-Mnih 253 (295)
T smart00663 230 TIRLNPLVCSPYNADFDGDE-MNLH 253 (295)
T ss_pred EEEECCCCCCCCCCCCCCCE-EEEE
T ss_conf 78988545787068877612-6764
Done!