Query gi|254780308|ref|YP_003064721.1| putative membrane-bound lytic murein transglycosylase signal peptide protein [Candidatus Liberibacter asiaticus str. psy62] Match_columns 288 No_of_seqs 149 out of 1157 Neff 6.2 Searched_HMMs 23785 Date Mon May 30 08:13:25 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780308.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 1qus_A Lytic murein transglyco 100.0 0 0 578.6 23.9 238 42-280 18-319 (322) 2 3gxr_A Goose-type lysozyme 1; 98.8 1.1E-08 4.5E-13 71.9 7.6 124 108-277 40-182 (187) 3 3mgw_A Lysozyme G; salmon, goo 98.8 1.3E-08 5.3E-13 71.4 6.9 84 104-237 34-117 (181) 4 1gbs_A Australian black SWAN e 98.7 3.2E-08 1.3E-12 69.0 7.8 124 105-278 39-181 (185) 5 1qsa_A Protein (soluble lytic 98.4 8.8E-07 3.7E-11 60.3 6.7 58 180-239 477-537 (618) 6 3fi7_A LMO1076 protein; lister 96.5 0.0016 6.8E-08 40.6 3.7 131 108-276 31-176 (183) 7 2zyc_A Peptidoglycan hydrolase 96.5 0.0019 8E-08 40.2 3.6 39 107-145 2-40 (170) 8 3eo5_A Resuscitation-promoting 71.3 5.5 0.00023 19.3 6.5 65 173-242 94-159 (171) 9 3h4s_E KCBP interacting Ca2+-b 63.7 4.1 0.00017 20.0 2.8 55 168-222 38-97 (135) 10 1qvb_A Beta-glycosidase; TIM-b 57.8 9.9 0.00042 17.7 4.1 48 115-182 368-415 (481) 11 3csq_A Morphogenesis protein 1 49.2 14 0.00058 16.9 4.2 37 42-78 14-54 (334) 12 1dlw_A Hemoglobin; oxygen stor 44.6 16 0.00068 16.5 3.6 34 38-71 74-107 (116) 13 2v94_A RPS24, 30S ribosomal pr 40.1 8.4 0.00035 18.2 1.2 31 115-146 42-72 (107) 14 1c7v_A CAVP, calcium vector pr 36.0 7.4 0.00031 18.5 0.4 53 169-221 7-64 (81) 15 1dly_A Hemoglobin; oxygen stor 35.4 23 0.00095 15.6 3.6 26 113-138 125-150 (164) 16 1jko_C HIN recombinase, DNA-in 34.6 15 0.00062 16.7 1.7 37 96-133 3-39 (52) 17 2gkm_A TRHBN, hemoglobin-like 32.3 25 0.0011 15.3 3.7 28 111-138 91-118 (136) 18 1ywx_A 30S ribosomal protein S 29.9 11 0.00047 17.4 0.5 42 115-157 33-76 (102) 19 1q80_A SCP, sarcoplasmic calci 29.6 28 0.0012 15.0 3.2 79 155-240 79-162 (174) 20 2g8y_A Malate/L-lactate dehydr 29.4 19 0.00079 16.0 1.6 43 209-255 297-340 (385) 21 1yx7_A Calsensin, LAN3-6 antig 29.3 20 0.00083 15.9 1.7 52 170-221 7-68 (83) 22 2k7c_A CABP1, calbrain, calciu 27.6 17 0.00071 16.3 1.1 51 170-221 7-63 (72) 23 2zux_A YESW protein; beta-prop 21.9 20 0.00084 15.9 0.6 13 210-222 330-342 (591) 24 1uws_A Beta-galactosidase; gly 21.7 40 0.0017 14.1 4.6 14 225-238 364-377 (489) 25 2opo_A Polcalcin CHE A 3; calc 21.2 21 0.0009 15.7 0.6 48 172-221 13-65 (86) 26 2ksc_A Cyanoglobin; hemeprotei 21.1 41 0.0017 14.0 4.4 27 111-137 83-109 (123) 27 2kn2_A Calmodulin; S MAPK phos 20.9 25 0.0011 15.3 0.9 12 88-99 61-72 (92) No 1 >1qus_A Lytic murein transglycosylase B; alpha-helical protein with AN five-stranded antiparallel beta-sheet, hydrolase; HET: BCN; 1.70A {Escherichia coli} SCOP: d.2.1.6 PDB: 1d0k_A* 1d0m_A* 1qdr_A* 1qdt_A 1d0l_A* 1qut_A* 1ltm_A* Probab=100.00 E-value=0 Score=578.64 Aligned_cols=238 Identities=24% Similarity=0.422 Sum_probs=219.5 Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCHHHHHHCCCCC--------CCCCCCHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 8999999999999839998999998608777702333202566--------66777989998764001357999998532 Q gi|254780308|r 42 FGEWKSAARARAVREGMSPKTAKHLFADLEYLDTTIARDRKMV--------TSPPVSFKDYLDGLSSSEIIAQGIALKKA 113 (288) Q Consensus 42 F~~wl~~l~~~A~~~Gis~~tl~~~f~~~~~~~~VI~~dr~Qp--------~ef~~t~~~Y~~~~vs~~Ri~~Gr~~~~~ 113 (288) ..++...+...+.++|+++++++.+|++++++++||++|++|+ +++++||.+|++++|++.||+.|++++++ T Consensus 18 ~p~~~~fi~~~a~~~g~~~~~l~~~f~~~k~~~~vi~~~~~q~~~~~~~~p~~~~~~w~~Y~~~~v~~~ri~~G~~~~~~ 97 (322) T 1qus_A 18 NPNAQQFIDKMVNKHGFDRQQLQEILSQAKRLDSVLRLMDNQAPTTSVKPPSGPNGAWLRYRKKFITPDNVQNGVVFWNQ 97 (322) T ss_dssp CHHHHHHHHHHHHHHCCCHHHHHHHHTTCCCCHHHHHHHHCC----------CCSCHHHHHHTTTCSHHHHHHHHHHHHH T ss_pred CHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHH T ss_conf 98899999999998099999999999719576999998863675444688512367799999985899999999999999 Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHCCCCCHHHCCCCCHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHCCCCCHHC-CCC Q ss_conf 3469999999838998894452310022101025641899998753275-31566547899999986438777000-367 Q gi|254780308|r 114 NSRLLINLKKEYGVPPGILMALWGLETHFGETMGKTPLLSTLATLAYDC-RRAKFFTEQFFYALDLVKKGVISSHA-LGA 191 (288) Q Consensus 114 ~~~~L~~ie~~yGV~~~ii~AiwGiET~yG~~~G~~~vl~aLaTLA~d~-RR~~ff~~el~a~l~~~~~g~~~~~~-~GS 191 (288) |+++|++||++|||||+||+|||||||+||+++|+++|+++|+||||++ ||++||++||+++|+|++++++++.. +|| T Consensus 98 ~~~~l~~ie~~yGVp~~ii~AiwGvET~yG~~~G~~~v~~aLaTLA~~~~rr~~ff~~eL~~~l~i~~~~~~~~~~l~GS 177 (322) T 1qus_A 98 YEDALNRAWQVYGVPPEIIVGIIGVETRWGRVMGKTRILDALATLSFNYPRRAEYFSGELETFLLMARDEQDDPLNLKGS 177 (322) T ss_dssp THHHHHHHHHHHCCCHHHHHHHHHHHHTTTTCCCCEEHHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHTTCCGGGCEEC T ss_pred HHHHHHHHHHHHCCCHHHHHHHEEEECCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCC T ss_conf 99999999999795988875620355310124588618999999997246157789999999999987079885768535 Q ss_pred CCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCC---------------------- Q ss_conf 5235786665522444215367899987887898889999999999729888589764---------------------- Q gi|254780308|r 192 TFGEIGQFQFLPVNVVKYAIDADEDGKIDLVKSNIDAIASAAKFLAKLGWTKCAGYQP---------------------- 249 (288) Q Consensus 192 ~aGa~G~~QFmPs~~~~yavD~dgdG~~dl~~~~~Da~aS~AnyL~~~GW~~g~~~~~---------------------- 249 (288) |||||||||||||||++||||||||||+|||++ +|||||+||||++|||++|+||.. T Consensus 178 wAGAmG~~QFMPSsy~~yAvD~DgDG~~Diwn~-~DaiaS~ANYL~~~GW~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (322) T 1qus_A 178 FAGAMGYGQFMPSSYKQYAVDFSGDGHINLWDP-VDAIGSVANYFKAHGWVKGDQVAVMANGQAPGLPNGFKTKYSISQL 256 (322) T ss_dssp TTCCBTTTTBCHHHHHHHCCCCSSSSCCCTTSH-HHHHHHHHHHHHHTTCCTTCCSEEEEESCCTTSCCEEEEEEEHHHH T ss_pred HHHHCCCCCCCHHHHHHHCCCCCCCCCCCCCCC-HHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCCHHHHH T ss_conf 244457875043678751637799986553683-2159899999998299889955898257654464567621129999 Q ss_pred --------------------------------CCHHHHHHHHHHCHHHHHHHHHHHHHHHCCC Q ss_conf --------------------------------5345899998526289999999999996899 Q gi|254780308|r 250 --------------------------------GEKNFAILKHWNASLNYNKTIAYIAAHIDGV 280 (288) Q Consensus 250 --------------------------------~~~n~~~~~~~n~s~~y~~~v~~~a~~~~g~ 280 (288) +.+||+||++||+|..|+++|++||++|.++ T Consensus 257 ~~~Gv~~~~~~~~~~~~~~l~l~~g~~~~~~L~~~NF~vI~~yN~S~~YAlaV~~Lad~I~~~ 319 (322) T 1qus_A 257 AAAGLTPQQPLGNHQQASLLRLDVGTGYQYWYGLPNFYTITRYNHSTHYAMAVWQLGQAVALA 319 (322) T ss_dssp HHTTCEESSCCTTCCEEEEEEEECSSSEEEEEECHHHHHHHTTSSCHHHHHHHHHHHHHHHHH T ss_pred HHCCCCCCCCCCCCCCCCEEECCCCCCCEEEEECCCHHHHHHHHCCHHHHHHHHHHHHHHHHH T ss_conf 875887688898645574575458888716997578999988418498999999999999873 No 2 >3gxr_A Goose-type lysozyme 1; atlantic COD, FISH lysozyme, active site residues, substrate binding sites, surface potential, muramidase activity; HET: NAG; 1.70A {Gadus morhua} PDB: 3gxk_A* Probab=98.82 E-value=1.1e-08 Score=71.87 Aligned_cols=124 Identities=14% Similarity=0.167 Sum_probs=79.5 Q ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCHHHCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCHH Q ss_conf 99853234699999998389988944523100221010256418999987532753156654789999998643877700 Q gi|254780308|r 108 IALKKANSRLLINLKKEYGVPPGILMALWGLETHFGETMGKTPLLSTLATLAYDCRRAKFFTEQFFYALDLVKKGVISSH 187 (288) Q Consensus 108 r~~~~~~~~~L~~ie~~yGV~~~ii~AiwGiET~yG~~~G~~~vl~aLaTLA~d~RR~~ff~~el~a~l~~~~~g~~~~~ 187 (288) ...+.+|+.++.++.++|||||.+|+||.-.||+|+....+ .... T Consensus 40 ~~~~~~y~~~i~~aa~~~gvdp~Ll~Aii~~ES~f~~~a~~-----------------------------------~~~~ 84 (187) T 3gxr_A 40 AGRMEKYKSFINNVAKKHVVDPAVIAAIISRESRAGNVIFN-----------------------------------TTPP 84 (187) T ss_dssp HHHHHTTHHHHHHHHHHHTCCHHHHHHHHHHHHTTTTTTTT-----------------------------------SSST T ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCC-----------------------------------CCCC T ss_conf 87699999999999999691999999999975378832114-----------------------------------5777 Q ss_pred CCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCC--C-CCCCCCCCCHHHHHHHHHHCH- Q ss_conf 036752357866655224442153678999878878988899999999997298--8-858976453458999985262- Q gi|254780308|r 188 ALGATFGEIGQFQFLPVNVVKYAIDADEDGKIDLVKSNIDAIASAAKFLAKLGW--T-KCAGYQPGEKNFAILKHWNAS- 263 (288) Q Consensus 188 ~~GS~aGa~G~~QFmPs~~~~yavD~dgdG~~dl~~~~~Da~aS~AnyL~~~GW--~-~g~~~~~~~~n~~~~~~~n~s- 263 (288) ..+|.+||+|.||+||+++.. .++|+ +.+.|...+.||+..== + +-..|.+...-..+|..||.- T Consensus 85 g~~S~~ga~GlMQi~p~t~~~----------~~~~d-p~~nI~~g~~~l~~~l~~~~~~~~~~~~~~~~~~alaAYNaG~ 153 (187) T 3gxr_A 85 GWGDNYNGFGLMQVDKRYHEP----------RGAWN-SEEHIDQATGILVNFIQLIQKKFPSWSTEQQLKGAIAAYNTGD 153 (187) T ss_dssp TEETTTTEETTTTEETTTSCC----------CSCTT-SHHHHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHCG T ss_pred CCCCCCCCCCCCCCCCHHCCC----------CCCCC-HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCC T ss_conf 786876550005237111254----------57889-8999999999999999999975678886867999999971370 Q ss_pred ---------------HHHHHHHHHHHHHH Q ss_conf ---------------89999999999996 Q gi|254780308|r 264 ---------------LNYNKTIAYIAAHI 277 (288) Q Consensus 264 ---------------~~y~~~v~~~a~~~ 277 (288) ..|+.-|..-+... T Consensus 154 g~V~~~~~~~~~~~t~~Yv~~Vl~ra~~y 182 (187) T 3gxr_A 154 GRVESYESVDSRTTGKDYSNDVVARAQWY 182 (187) T ss_dssp GGCCCSTTTTTTSGGGCHHHHHHHHHHHH T ss_pred HHHHHCCCCCCCHHHHHHHHHHHHHHHHH T ss_conf 64542158999701578999999999999 No 3 >3mgw_A Lysozyme G; salmon, goose-type, differential scanning calorime refolding, thermal tolerance, innate immunity, hydrolase; 1.75A {Salmo salar} Probab=98.78 E-value=1.3e-08 Score=71.44 Aligned_cols=84 Identities=13% Similarity=0.192 Sum_probs=63.8 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCHHHCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCC Q ss_conf 79999985323469999999838998894452310022101025641899998753275315665478999999864387 Q gi|254780308|r 104 IAQGIALKKANSRLLINLKKEYGVPPGILMALWGLETHFGETMGKTPLLSTLATLAYDCRRAKFFTEQFFYALDLVKKGV 183 (288) Q Consensus 104 i~~Gr~~~~~~~~~L~~ie~~yGV~~~ii~AiwGiET~yG~~~G~~~vl~aLaTLA~d~RR~~ff~~el~a~l~~~~~g~ 183 (288) ...-...+.+|+.++.++.++|||||.+|+||+-.||+++... T Consensus 34 ~~~d~~~~~~y~~~i~~aa~~~gvdp~ll~Ai~~~ES~~~~~~------------------------------------- 76 (181) T 3mgw_A 34 AEHDLVRMNKYKELITRVGQKHGLDPAIIAGIISRESRAGSAL------------------------------------- 76 (181) T ss_dssp HHHHHHHHHTTHHHHHHHHHHHTCCHHHHHHHHHHHHTTTTTC------------------------------------- T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCC------------------------------------- T ss_conf 8988998999999999999996929999999999874775247------------------------------------- Q ss_pred CCHHCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHH Q ss_conf 770003675235786665522444215367899987887898889999999999 Q gi|254780308|r 184 ISSHALGATFGEIGQFQFLPVNVVKYAIDADEDGKIDLVKSNIDAIASAAKFLA 237 (288) Q Consensus 184 ~~~~~~GS~aGa~G~~QFmPs~~~~yavD~dgdG~~dl~~~~~Da~aS~AnyL~ 237 (288) .+ ..+|.+||.|.||+||++. +..|+|+ +.+.|-..+.||+ T Consensus 77 -~~-~a~S~~gA~GLMQi~p~ta----------~~~~~~d-p~~ni~~g~~~l~ 117 (181) T 3mgw_A 77 -DH-GWGDHGKGFGLMQVDKRYH----------KIVGAWD-SEKHISQGTEILI 117 (181) T ss_dssp -BT-TEETTTTEETTTTEETTTS----------CCCSCTT-SHHHHHHHHHHHH T ss_pred -CC-CCCCCCCCCCCCCCCCCCC----------CCCCCCC-HHHHHHHHHHHHH T ss_conf -88-8868888836300166435----------6467789-8999999999999 No 4 >1gbs_A Australian black SWAN egg white lysozyme; hydrolase (O-glycosyl); 1.50A {Cygnus atratus} SCOP: d.2.1.5 PDB: 1lsp_A* 153l_A 154l_A* Probab=98.73 E-value=3.2e-08 Score=69.04 Aligned_cols=124 Identities=12% Similarity=0.151 Sum_probs=77.5 Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCHHHCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCC Q ss_conf 99999853234699999998389988944523100221010256418999987532753156654789999998643877 Q gi|254780308|r 105 AQGIALKKANSRLLINLKKEYGVPPGILMALWGLETHFGETMGKTPLLSTLATLAYDCRRAKFFTEQFFYALDLVKKGVI 184 (288) Q Consensus 105 ~~Gr~~~~~~~~~L~~ie~~yGV~~~ii~AiwGiET~yG~~~G~~~vl~aLaTLA~d~RR~~ff~~el~a~l~~~~~g~~ 184 (288) ..-...+.+++.++.++.++|||||.+|.||.-.||+|....- T Consensus 39 ~~d~~~~~~y~~~i~~aa~~~gvdp~ll~Aii~~ES~f~~~a~------------------------------------- 81 (185) T 1gbs_A 39 ERDLKAMDRYKTIIKKVGEKLCVEPAVIAGIISRESHAGKVLK------------------------------------- 81 (185) T ss_dssp HHHHHHHHTSHHHHHHHHHHHTCCHHHHHHHHHHHHGGGTTCB------------------------------------- T ss_pred HCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCC------------------------------------- T ss_conf 6015458999999999999939599999999998568999894------------------------------------- Q ss_pred CHHCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCC--CC-CCCCCCCCCHHHHHHHHHH Q ss_conf 70003675235786665522444215367899987887898889999999999729--88-8589764534589999852 Q gi|254780308|r 185 SSHALGATFGEIGQFQFLPVNVVKYAIDADEDGKIDLVKSNIDAIASAAKFLAKLG--WT-KCAGYQPGEKNFAILKHWN 261 (288) Q Consensus 185 ~~~~~GS~aGa~G~~QFmPs~~~~yavD~dgdG~~dl~~~~~Da~aS~AnyL~~~G--W~-~g~~~~~~~~n~~~~~~~n 261 (288) .-.||-++|+|.|||||+++..++ +|+ +.+.|.-.+.||+..= +. ....|.....-..+|-.|| T Consensus 82 --s~~g~~~~A~GLMQi~p~t~~~~~----------~~d-p~~nI~~g~~~L~~~~~~~~~~~~~~~~~~~l~~alaAYN 148 (185) T 1gbs_A 82 --NGWGDRGNGFGLMQVDKRSHKPQG----------TWN-GEVHITQGTTILTDFIKRIQKKFPSWTKDQQLKGGISAYN 148 (185) T ss_dssp --TTBCTTSCEETTTTEETTTSCCCS----------CTT-SHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHH T ss_pred --CCCCCCCCCEEEEEECHHHHCCCC----------CCC-HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHC T ss_conf --888899986445400701201015----------899-7772999999999999998542787875423999999983 Q ss_pred C----------------HHHHHHHHHHHHHHHC Q ss_conf 6----------------2899999999999968 Q gi|254780308|r 262 A----------------SLNYNKTIAYIAAHID 278 (288) Q Consensus 262 ~----------------s~~y~~~v~~~a~~~~ 278 (288) . ...|+..|...+.... T Consensus 149 aG~g~V~~~~~~~~~~~~~~Yv~~Vl~ra~~y~ 181 (185) T 1gbs_A 149 AGAGNVRSYARMDIGTTHDDYANDVVARAQYYK 181 (185) T ss_dssp HCGGGCCCSTTTTTTSGGGCHHHHHHHHHHHHH T ss_pred CCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHH T ss_conf 371367761689998534789999999999998 No 5 >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* Probab=98.35 E-value=8.8e-07 Score=60.33 Aligned_cols=58 Identities=12% Similarity=0.141 Sum_probs=42.2 Q ss_pred HCCCCCHHCCCCCCCCCCCCCCCHHHHHHCCCCCCCC---CCCCCCCCHHHHHHHHHHHHHHC Q ss_conf 4387770003675235786665522444215367899---98788789888999999999972 Q gi|254780308|r 180 KKGVISSHALGATFGEIGQFQFLPVNVVKYAIDADED---GKIDLVKSNIDAIASAAKFLAKL 239 (288) Q Consensus 180 ~~g~~~~~~~GS~aGa~G~~QFmPs~~~~yavD~dgd---G~~dl~~~~~Da~aS~AnyL~~~ 239 (288) ++-..++..+ |.+||+|.||+||+|-...|....-+ ...+|. ++...|.-.+.||+.. T Consensus 477 qES~F~~~a~-S~agA~GLMQlmP~Ta~~~a~~~~~~~~~~~~~l~-dp~~Ni~lG~~yl~~l 537 (618) T 1qsa_A 477 QESAWNPKVK-SPVGASGLMQIMPGTATHTVKMFSIPGYSSPGQLL-DPETNINIGTSYLQYV 537 (618) T ss_dssp HHHTTCTTCB-CTTCCBTTTTBCHHHHHHHHHHHTCCSCCCGGGGG-SHHHHHHHHHHHHHHH T ss_pred HHHCCCCCCC-CCCCCEEHHHCCHHHHHHHHHHCCCCCCCCHHHHC-CHHHHHHHHHHHHHHH T ss_conf 9816999871-69998200511789999999983998778866727-9999999999999999 No 6 >3fi7_A LMO1076 protein; listeria monocytogenes, autolysin, N acetylglucosaminidase, peptidoglycan hydrolase, autoinhibition, GH73; 2.35A {Undefined} Probab=96.54 E-value=0.0016 Score=40.62 Aligned_cols=131 Identities=16% Similarity=0.216 Sum_probs=71.2 Q ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCHHHCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCHH Q ss_conf 99853234699999998389988944523100221010256418999987532753156654789999998643877700 Q gi|254780308|r 108 IALKKANSRLLINLKKEYGVPPGILMALWGLETHFGETMGKTPLLSTLATLAYDCRRAKFFTEQFFYALDLVKKGVISSH 187 (288) Q Consensus 108 r~~~~~~~~~L~~ie~~yGV~~~ii~AiwGiET~yG~~~G~~~vl~aLaTLA~d~RR~~ff~~el~a~l~~~~~g~~~~~ 187 (288) ++|.+++...-.++.++|||||++++|-..+||.||+. .||-.+- ..+| . T Consensus 31 ~~fi~~~~~~a~~~~~~ygI~ps~~lAQailESGwG~S-----------~la~~~n-~NlF------------------G 80 (183) T 3fi7_A 31 QTFINSISTQAMDLCKKYNLYPSVMIAQAALESNWGRS-----------ELGKAPN-YNLF------------------G 80 (183) T ss_dssp HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHTTTTS-----------TTTSTTT-CCTT------------------C T ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCC-----------CCCCCCC-CCCC------------------C T ss_conf 99999999999999999694989999999997479988-----------6566777-2503------------------4 Q ss_pred CCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCC------CCCCHHHHHHHHHHHHHHCCCCCC----CCCCCCCHHHH-- Q ss_conf 036752357866655224442153678999878------878988899999999997298885----89764534589-- Q gi|254780308|r 188 ALGATFGEIGQFQFLPVNVVKYAIDADEDGKID------LVKSNIDAIASAAKFLAKLGWTKC----AGYQPGEKNFA-- 255 (288) Q Consensus 188 ~~GS~aGa~G~~QFmPs~~~~yavD~dgdG~~d------l~~~~~Da~aS~AnyL~~~GW~~g----~~~~~~~~n~~-- 255 (288) ++++|.|. ..-+++ ....+|.+... -+.|..|.+..-+++|..+..-.. ..+........ T Consensus 81 ika~~~~~---~~~~~t-----~e~~~~~~~~~~~~~f~~y~s~~~sv~dy~~~L~~~~~y~~~~~~~~~~~~~~~~~~~ 152 (183) T 3fi7_A 81 IKGSYNGK---SVTMKT-----WEYSDSKGWYQINANFAKYPSHKESLEDNAKKLRNGPSWDSSYYKGAWRENAKTYKDA 152 (183) T ss_dssp CBSCBTTB---EEEEEE-----EEEETTTEEEEEEEEEECCSSHHHHHHHHHHHHHHCCTTCTTTTGGGSTTTCSSHHHH T ss_pred CCCCCCCC---CCCCCC-----EEECCCCCCEEEEEEEEEECCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHH T ss_conf 31368997---557878-----3450798632322125520989999999999995596302577889998602429999 Q ss_pred -HHH--HHHCHHHHHHHHHHHHHH Q ss_conf -999--852628999999999999 Q gi|254780308|r 256 -ILK--HWNASLNYNKTIAYIAAH 276 (288) Q Consensus 256 -~~~--~~n~s~~y~~~v~~~a~~ 276 (288) .+. .|-..-.|+..|..+-++ T Consensus 153 ~~l~~~gYATDp~Y~~kl~~iI~~ 176 (183) T 3fi7_A 153 TAWLQGRYATDNTYASKLNTLISS 176 (183) T ss_dssp HHHHBTTTBSCTTHHHHHHHHHHH T ss_pred HHHHHCCCCCCHHHHHHHHHHHHH T ss_conf 999977886880599999999998 No 7 >2zyc_A Peptidoglycan hydrolase FLGJ; 1.74A {Sphingomonas SP} Probab=96.46 E-value=0.0019 Score=40.20 Aligned_cols=39 Identities=28% Similarity=0.345 Sum_probs=35.2 Q ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCHHH Q ss_conf 999853234699999998389988944523100221010 Q gi|254780308|r 107 GIALKKANSRLLINLKKEYGVPPGILMALWGLETHFGET 145 (288) Q Consensus 107 Gr~~~~~~~~~L~~ie~~yGV~~~ii~AiwGiET~yG~~ 145 (288) .++|.++....=.++.++|||||++++|-+.+||.+|+. T Consensus 2 ~~~Fi~~~~~~A~~~a~~~GIp~si~lAQA~lESGwG~S 40 (170) T 2zyc_A 2 AQAFVDATWPQAAKAAQSLGVPAHFLVAQAALETGWGKS 40 (170) T ss_dssp CHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHTTTTT T ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCC T ss_conf 699999999999999999397989999999998479987 No 8 >3eo5_A Resuscitation-promoting factor RPFB; cell adhesion, crystal; 1.83A {Mycobacterium tuberculosis} PDB: 1xsf_A Probab=71.27 E-value=5.5 Score=19.30 Aligned_cols=65 Identities=20% Similarity=0.168 Sum_probs=43.9 Q ss_pred HHHHHHHHCCCCCHHCCCCCCCCCCCCCCCHHHHHHCC-CCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC Q ss_conf 99999864387770003675235786665522444215-36789998788789888999999999972988 Q gi|254780308|r 173 FYALDLVKKGVISSHALGATFGEIGQFQFLPVNVVKYA-IDADEDGKIDLVKSNIDAIASAAKFLAKLGWT 242 (288) Q Consensus 173 ~a~l~~~~~g~~~~~~~GS~aGa~G~~QFmPs~~~~ya-vD~dgdG~~dl~~~~~Da~aS~AnyL~~~GW~ 242 (288) .+.|.-|+-|.--.- -+--|+-|..||-|+||..++ .++- ++.|+ -|..+-++-+-+.+...||. T Consensus 94 w~~~a~cES~gn~~~--n~~~g~yG~~Qf~~~tw~~~gg~~~~--~~~~~-As~~~Q~~~a~~~~~~~G~~ 159 (171) T 3eo5_A 94 WDAIAGCEAGGNWAI--NTGNGYYGGVQFDQGTWEANGGLRYA--PRADL-ATREEQIAVAEVTRLRQGWG 159 (171) T ss_dssp HHHHHHHHHTTCTTC--CCSSSCBTTTTBCHHHHHHTTGGGTC--SSGGG-SCHHHHHHHHHHHHHHHCST T ss_pred CHHHHHCCCCCCCEE--CCCCCCEEEEEECHHHHHHCCCCCCC--CCHHH-CCHHHHHHHHHHHHHHCCCC T ss_conf 476640036888330--18988631366556167653787678--89034-89999999999999856888 No 9 >3h4s_E KCBP interacting Ca2+-binding protein; kinesin, motor protein, regulation, complex, calcium, EF- hand, calmodulin, ATP-binding, microtubule; HET: ADP; 2.40A {Arabidopsis thaliana} Probab=63.73 E-value=4.1 Score=20.02 Aligned_cols=55 Identities=18% Similarity=0.279 Sum_probs=36.0 Q ss_pred HHHHHHHHHHHHHC---CCCCHHCCCCCCCCCCCCCCCHHHHHHC--CCCCCCCCCCCCC Q ss_conf 54789999998643---8777000367523578666552244421--5367899987887 Q gi|254780308|r 168 FTEQFFYALDLVKK---GVISSHALGATFGEIGQFQFLPVNVVKY--AIDADEDGKIDLV 222 (288) Q Consensus 168 f~~el~a~l~~~~~---g~~~~~~~GS~aGa~G~~QFmPs~~~~y--avD~dgdG~~dl~ 222 (288) -..||..+.++.+. |.|+.+.+.....-+|.-.+-..-+... .+|-||||+++.- T Consensus 38 ~~eeL~~AF~~fD~d~~G~It~~eLk~v~~~lG~e~ls~eEl~~mi~e~D~d~dG~I~~~ 97 (135) T 3h4s_E 38 FVSELCKGFSLLADPERHLITAESLRRNSGILGIEGMSKEDAQGMVREGDLDGDGALNQT 97 (135) T ss_dssp HHHHHHHHHHHHSBTTTTBBCHHHHHHHGGGGTCCCCCHHHHHHHHHHHCSSCSSSBCHH T ss_pred HHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCEEHH T ss_conf 599999999988589999759999999998738675769999999998686989969099 No 10 >1qvb_A Beta-glycosidase; TIM-barrel, thermostable, hydrolase; 2.40A {Thermosphaera aggregans} SCOP: c.1.8.4 Probab=57.85 E-value=9.9 Score=17.74 Aligned_cols=48 Identities=23% Similarity=0.369 Sum_probs=26.4 Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHCCCCCHHHCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCC Q ss_conf 46999999983899889445231002210102564189999875327531566547899999986438 Q gi|254780308|r 115 SRLLINLKKEYGVPPGILMALWGLETHFGETMGKTPLLSTLATLAYDCRRAKFFTEQFFYALDLVKKG 182 (288) Q Consensus 115 ~~~L~~ie~~yGV~~~ii~AiwGiET~yG~~~G~~~vl~aLaTLA~d~RR~~ff~~el~a~l~~~~~g 182 (288) ..+|+.+.++||+| |+=.|...|.. .|.+|.+|.++.|.++++-++.| T Consensus 368 ~~~L~~i~~~Y~~P------i~ITENG~~~~--------------~D~~Ri~yl~~hl~~v~~Ai~dG 415 (481) T 1qvb_A 368 YLLLKELYNRYGVD------LIVTENGVSDS--------------RDALRPAYLVSHVYSVWKAANEG 415 (481) T ss_dssp HHHHHHHHHHHCCE------EEEEECCCCCT--------------TCSSHHHHHHHHHHHHHHHHHTT T ss_pred HHHHHHHHHHHCCC------EEEECCCCCCC--------------CCHHHHHHHHHHHHHHHHHHHCC T ss_conf 99999998850989------89979988877--------------76589999999999999999879 No 11 >3csq_A Morphogenesis protein 1; hydrolase, infection, late protein; 1.80A {Bacteriophage phi-29} Probab=49.16 E-value=14 Score=16.89 Aligned_cols=37 Identities=3% Similarity=-0.078 Sum_probs=24.5 Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHCCC----CCCHHHHH Q ss_conf 89999999999998399989999986087----77702333 Q gi|254780308|r 42 FGEWKSAARARAVREGMSPKTAKHLFADL----EYLDTTIA 78 (288) Q Consensus 42 F~~wl~~l~~~A~~~Gis~~tl~~~f~~~----~~~~~VI~ 78 (288) ...=...+.+.++.+|++++.+-.++.++ .++|..+. T Consensus 14 ~~~na~~i~~~l~~~G~s~~~aAgilgn~~~ESgfnP~a~~ 54 (334) T 3csq_A 14 MKVNAQYILNYLSSNGWTKQAICGMLGNMQSESTINPGLWQ 54 (334) T ss_dssp HHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHSSCTTCBG T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCHHHC T ss_conf 37889999999998799999999999877666278822320 No 12 >1dlw_A Hemoglobin; oxygen storage/transport complex; HET: HEM; 1.54A {Paramecium caudatum} SCOP: a.1.1.1 PDB: 1uvy_A* Probab=44.64 E-value=16 Score=16.46 Aligned_cols=34 Identities=15% Similarity=0.159 Sum_probs=18.3 Q ss_pred CHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCC Q ss_conf 8320899999999999983999899999860877 Q gi|254780308|r 38 TADRFGEWKSAARARAVREGMSPKTAKHLFADLE 71 (288) Q Consensus 38 ~~~~F~~wl~~l~~~A~~~Gis~~tl~~~f~~~~ 71 (288) +...|+.|+.-+.+...+.|++.+.++.++.-+. T Consensus 74 ~~~~fd~~~~~l~~al~e~~v~~~~~~e~~~~~~ 107 (116) T 1dlw_A 74 SNAQFTTVIGHLRSALTGAGVAAALVEQTVAVAE 107 (116) T ss_dssp CHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH T ss_pred CHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH T ss_conf 9999999999999999984979999999999999 No 13 >2v94_A RPS24, 30S ribosomal protein S24E; ribonucleoprotein; 1.90A {Pyrococcus abyssi} SCOP: d.12.1.3 Probab=40.11 E-value=8.4 Score=18.16 Aligned_cols=31 Identities=13% Similarity=0.134 Sum_probs=25.4 Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHCCCCCHHHC Q ss_conf 46999999983899889445231002210102 Q gi|254780308|r 115 SRLLINLKKEYGVPPGILMALWGLETHFGETM 146 (288) Q Consensus 115 ~~~L~~ie~~yGV~~~ii~AiwGiET~yG~~~ 146 (288) ..+-+.+.+.|||+++.|+ |-++.|.||... T Consensus 42 ~ei~~kla~~~~~~~~~vv-v~~~~t~fG~~~ 72 (107) T 2v94_A 42 KDVKGKLVAMLDLNPETTV-IQYIRSYFGSYK 72 (107) T ss_dssp HHHHHHHHHHHTCCGGGEE-EEEEECCTTCSE T ss_pred HHHHHHHHHHHCCCCCEEE-EECCEECCCCCE T ss_conf 9999999997795978899-975774689974 No 14 >1c7v_A CAVP, calcium vector protein; EF-hand family, calcium binding protein, metal binding protein; NMR {Branchiostoma lanceolatum} SCOP: a.39.1.5 PDB: 1c7w_A Probab=36.03 E-value=7.4 Score=18.49 Aligned_cols=53 Identities=23% Similarity=0.365 Sum_probs=32.8 Q ss_pred HHHHHHHHHHHHC---CCCCHHCCCCCCCCCCCCCCCHHHHH--HCCCCCCCCCCCCC Q ss_conf 4789999998643---87770003675235786665522444--21536789998788 Q gi|254780308|r 169 TEQFFYALDLVKK---GVISSHALGATFGEIGQFQFLPVNVV--KYAIDADEDGKIDL 221 (288) Q Consensus 169 ~~el~a~l~~~~~---g~~~~~~~GS~aGa~G~~QFmPs~~~--~yavD~dgdG~~dl 221 (288) ..+|..+.+..+. |.|+...+..-...+|...+-..... --.+|-||||.+|. T Consensus 7 ee~l~~~F~~~D~d~~G~I~~~el~~~l~~lg~~~~t~~ei~~i~~~~D~d~dG~I~~ 64 (81) T 1c7v_A 7 EEEILRAFKVFDANGDGVIDFDEFKFIMQKVGEEPLTDAEVEEAMKEADEDGNGVIDI 64 (81) T ss_dssp CHHHHHHHHHHSCSGGGEECHHHHHHHSSTTTTCCCCHHHHHHHHHHHCSSGGGSEEH T ss_pred HHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCEEH T ss_conf 9999999999838977938599999999984778898999999999858999992839 No 15 >1dly_A Hemoglobin; oxygen storage/transport complex; HET: HEM; 1.80A {Chlamydomonas eugametos} SCOP: a.1.1.1 PDB: 1uvx_A* Probab=35.41 E-value=23 Score=15.58 Aligned_cols=26 Identities=31% Similarity=0.404 Sum_probs=12.2 Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHC Q ss_conf 23469999999838998894452310 Q gi|254780308|r 113 ANSRLLINLKKEYGVPPGILMALWGL 138 (288) Q Consensus 113 ~~~~~L~~ie~~yGV~~~ii~AiwGi 138 (288) .....|..+=++.|||++.+-.++.+ T Consensus 125 ~~l~~l~~al~e~gv~~~~~~ei~~~ 150 (164) T 1dly_A 125 AVARHLSDTLTELGVPPEDITDAMAV 150 (164) T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHH T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHH T ss_conf 99999999999839999999999999 No 16 >1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C Probab=34.63 E-value=15 Score=16.69 Aligned_cols=37 Identities=14% Similarity=-0.000 Sum_probs=25.6 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH Q ss_conf 76400135799999853234699999998389988944 Q gi|254780308|r 96 DGLSSSEIIAQGIALKKANSRLLINLKKEYGVPPGILM 133 (288) Q Consensus 96 ~~~vs~~Ri~~Gr~~~~~~~~~L~~ie~~yGV~~~ii~ 133 (288) +..+++..+...++++..- ....+|.+.|||.+..|- T Consensus 3 p~kLt~~q~~~a~~l~~~G-~s~~~iA~~~gVsr~TlY 39 (52) T 1jko_C 3 PRAINKHEQEQISRLLEKG-HPRQQLAIIFGIGVSTLY 39 (52) T ss_dssp CCSSCTTHHHHHHHHHHTT-CCHHHHHHTTSCCHHHHH T ss_pred CCCCCHHHHHHHHHHHHCC-CCHHHHHHHHCCCHHHHH T ss_conf 9879999999999999978-989999999797999999 No 17 >2gkm_A TRHBN, hemoglobin-like protein HBN, flavohemoglobin; truncated hemoglobin, mutant, oxygen storage/transport complex; HET: HEM; 1.73A {Mycobacterium tuberculosis} PDB: 1idr_A* 1rte_A* 1s56_A* 1s61_A* 2gl3_A* 2gln_A* 2gkn_A* Probab=32.34 E-value=25 Score=15.28 Aligned_cols=28 Identities=18% Similarity=0.251 Sum_probs=14.1 Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHC Q ss_conf 5323469999999838998894452310 Q gi|254780308|r 111 KKANSRLLINLKKEYGVPPGILMALWGL 138 (288) Q Consensus 111 ~~~~~~~L~~ie~~yGV~~~ii~AiwGi 138 (288) +......|.++=++.|||.+.+..++.+ T Consensus 91 f~~~~~~l~~al~e~~v~~~~~~~~l~~ 118 (136) T 2gkm_A 91 FSLVAGHLADALTAAGVPSETITEILGV 118 (136) T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHH T ss_conf 9999999999999829799999999999 No 18 >1ywx_A 30S ribosomal protein S24E; GFT MRR16, nesgc, structural genomics, PSI, protein structure initiative; NMR {Methanococcus maripaludis} SCOP: d.12.1.3 Probab=29.86 E-value=11 Score=17.44 Aligned_cols=42 Identities=14% Similarity=0.213 Sum_probs=29.1 Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHCCCCCHHH--CCCCCHHHHHHH Q ss_conf 4699999998389988944523100221010--256418999987 Q gi|254780308|r 115 SRLLINLKKEYGVPPGILMALWGLETHFGET--MGKTPLLSTLAT 157 (288) Q Consensus 115 ~~~L~~ie~~yGV~~~ii~AiwGiET~yG~~--~G~~~vl~aLaT 157 (288) ..+-+++.+.||+++..|+ |-++.|.||.. +|-..|-++..+ T Consensus 33 ~ei~~kla~~~~~~~~~vv-v~~~~t~fG~~~s~G~a~IYds~e~ 76 (102) T 1ywx_A 33 KDVKMKLVAVLNANKQVLV-VDTLDQIFGKLEAEGYAKIYNDEKA 76 (102) T ss_dssp HHHHHHHHHHHTSCSTTEE-EEEEEECSSSSEEEEEEEECSCHHH T ss_pred HHHHHHHHHHHCCCCCEEE-EEECEECCCCCEEEEEEEEECCHHH T ss_conf 9999999997793978899-9806636899658899999689999 No 19 >1q80_A SCP, sarcoplasmic calcium-binding protein; all-alpha, metal binding protein; NMR {Neanthes diversicolor} SCOP: a.39.1.5 PDB: 2scp_A Probab=29.58 E-value=28 Score=15.00 Aligned_cols=79 Identities=19% Similarity=0.274 Sum_probs=43.9 Q ss_pred HHHHHCCCCHHHHHHHHHHHHHHHHHC---CCCCHHCCCCCCCCCCCCCCCHHHHHHC--CCCCCCCCCCCCCCCHHHHH Q ss_conf 987532753156654789999998643---8777000367523578666552244421--53678999878878988899 Q gi|254780308|r 155 LATLAYDCRRAKFFTEQFFYALDLVKK---GVISSHALGATFGEIGQFQFLPVNVVKY--AIDADEDGKIDLVKSNIDAI 229 (288) Q Consensus 155 LaTLA~d~RR~~ff~~el~a~l~~~~~---g~~~~~~~GS~aGa~G~~QFmPs~~~~y--avD~dgdG~~dl~~~~~Da~ 229 (288) +..+.......+..+..+..+.+.++. |.|+.+.+-.+-.++|.+ +...... .+|-||||+++.- +=+ T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~F~~~D~d~dG~I~~~E~~~~~~~~~~~---~~~~~~~f~~~D~d~dG~Is~~----Ef~ 151 (174) T 1q80_A 79 MKEMVKNPEAKSVVEGPLPLFFRAVDTNEDNNISRDEYGIFFGMLGLD---KTMAPASFDAIDTNNDGLLSLE----EFV 151 (174) T ss_dssp HHHHTTSTTCHHHHHTHHHHHHHHHCTTSSSSBCHHHHHHHHHHHTCC---GGGHHHHHHHHCTTCSSSBCHH----HHH T ss_pred HHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCC---HHHHHHHHHHCCCCCCCCEEHH----HHH T ss_conf 988750002678899999987651377899914299999999983989---9999999997087989948499----999 Q ss_pred HHHHHHHHHCC Q ss_conf 99999999729 Q gi|254780308|r 230 ASAAKFLAKLG 240 (288) Q Consensus 230 aS~AnyL~~~G 240 (288) ...-+|+.... T Consensus 152 ~~~~~~~~~~~ 162 (174) T 1q80_A 152 IAGSDFFMNDG 162 (174) T ss_dssp HHHHHHHHCCC T ss_pred HHHHHHHHCCC T ss_conf 99999972597 No 20 >2g8y_A Malate/L-lactate dehydrogenases; NAD, E.coli, structural genomics, PSI, protein structure initiative, midwest center for structural genomics; HET: NAD 1PE; 2.15A {Escherichia coli K12} Probab=29.44 E-value=19 Score=16.05 Aligned_cols=43 Identities=16% Similarity=0.132 Sum_probs=18.1 Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCC-CCCCCCHHHH Q ss_conf 1536789998788789888999999999972988858-9764534589 Q gi|254780308|r 209 YAIDADEDGKIDLVKSNIDAIASAAKFLAKLGWTKCA-GYQPGEKNFA 255 (288) Q Consensus 209 yavD~dgdG~~dl~~~~~Da~aS~AnyL~~~GW~~g~-~~~~~~~n~~ 255 (288) .++|-+--+-.+ |. .-+.+..++++..-=..+. -+-||++-++ T Consensus 297 i~Idp~~F~~~~-f~---~~~~~~~~~ik~~p~~~~~~V~~PGE~e~~ 340 (385) T 2g8y_A 297 IIINPELFGAPD-CN---AQTEAFAEWVKASPHDDDKPILLPGEWEVN 340 (385) T ss_dssp EEECGGGSCCTT-HH---HHHHHHHHHHHTSCCCTTSCCCCTTHHHHH T ss_pred EEECHHHCCCHH-HH---HHHHHHHHHHHCCCCCCCCEEECCCHHHHH T ss_conf 863778715667-99---999999999837898999935789838999 No 21 >1yx7_A Calsensin, LAN3-6 antigen; calcium-binding protein EF-hand, helix-loop- helix, nervous system, metal binding protein; NMR {Haemopis marmorata} PDB: 1yx8_A Probab=29.34 E-value=20 Score=15.92 Aligned_cols=52 Identities=19% Similarity=0.289 Sum_probs=24.5 Q ss_pred HHHHHHHHHHHC---CCCCHHCCCCCCCCCCCCCCCH-----HHHHHC--CCCCCCCCCCCC Q ss_conf 789999998643---8777000367523578666552-----244421--536789998788 Q gi|254780308|r 170 EQFFYALDLVKK---GVISSHALGATFGEIGQFQFLP-----VNVVKY--AIDADEDGKIDL 221 (288) Q Consensus 170 ~el~a~l~~~~~---g~~~~~~~GS~aGa~G~~QFmP-----s~~~~y--avD~dgdG~~dl 221 (288) .+|..+.++.+. |.|+.+.+...-..+|.+.-+| ...... .+|-||||+++. T Consensus 7 ~~l~~~F~~~D~d~dG~I~~~El~~~l~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~I~~ 68 (83) T 1yx7_A 7 AELEAAFKKLDANGDGYVTALELQTFMVTLDAYKALSKDKVKEASAKLIKMADKNSDGKISK 68 (83) T ss_dssp THHHHHHHHHSSSCSSSCSHHHHHHHHHHHTTCTTTTTTTTHHHHHHHHTTTCSSSCSCCSH T ss_pred HHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCH T ss_conf 99999999987998291869999999998176635573225999999999938896995959 No 22 >2k7c_A CABP1, calbrain, calcium-binding protein 1; EF-hand, calmodulin, neuron, alternative splicing, cell membrane, cytoplasm, cytoskeleton, lipoprotein; NMR {Homo sapiens} PDB: 2k7d_A Probab=27.59 E-value=17 Score=16.35 Aligned_cols=51 Identities=22% Similarity=0.365 Sum_probs=26.1 Q ss_pred HHHHHHHHHHHC---CCCCHHCCCCCC-CCCCCCCCCHHHHHHC--CCCCCCCCCCCC Q ss_conf 789999998643---877700036752-3578666552244421--536789998788 Q gi|254780308|r 170 EQFFYALDLVKK---GVISSHALGATF-GEIGQFQFLPVNVVKY--AIDADEDGKIDL 221 (288) Q Consensus 170 ~el~a~l~~~~~---g~~~~~~~GS~a-Ga~G~~QFmPs~~~~y--avD~dgdG~~dl 221 (288) +||..+.+.++. |.|+...+..-- -.+|. +.-+...... .+|-||||+++. T Consensus 7 ~el~~~F~~~D~d~~G~I~~~El~~~l~~~lg~-~~s~~e~~~~~~~~D~d~dG~I~~ 63 (72) T 2k7c_A 7 KELRDAFREFDTNGDGEISTSELREAMRKLLGH-QVGHRDIEEIIRDVDLNGDGRVDF 63 (72) T ss_dssp HHHHHHHHHHCCSSSSEECHHHHHHHHHHTTCS-SSCHHHHHHHHHHSCCCSSCCEEH T ss_pred HHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCC-CCCHHHHHHHHHHHCCCCCCEEEH T ss_conf 999999999848966979799999999986298-766689999999857898982839 No 23 >2zux_A YESW protein; beta-propeller, lyase, rhamnose complex; HET: RAM; 1.32A {Bacillus subtilis} PDB: 2z8s_A* 2z8r_A* Probab=21.93 E-value=20 Score=15.90 Aligned_cols=13 Identities=38% Similarity=0.677 Sum_probs=9.3 Q ss_pred CCCCCCCCCCCCC Q ss_conf 5367899987887 Q gi|254780308|r 210 AIDADEDGKIDLV 222 (288) Q Consensus 210 avD~dgdG~~dl~ 222 (288) ..|.||||+-||. T Consensus 330 VaDvDGDG~dDIV 342 (591) T 2zux_A 330 IADVDGDGKDEII 342 (591) T ss_dssp EECCSSSSSCEEE T ss_pred EEECCCCCHHHEE T ss_conf 6743899712558 No 24 >1uws_A Beta-galactosidase; glycoside hydrolase, family 1, hydrolase, archaeon 2-deoxy- 2-fluoro-glucose; HET: G2F; 1.95A {Sulfolobus solfataricus} SCOP: c.1.8.4 PDB: 1uwr_A* 1uwq_A* 1uwt_A* 1uwu_A* 2ceq_A* 2cer_A* 1gow_A 1uwi_A Probab=21.72 E-value=40 Score=14.10 Aligned_cols=14 Identities=0% Similarity=-0.199 Sum_probs=7.4 Q ss_pred HHHHHHHHHHHHHH Q ss_conf 88899999999997 Q gi|254780308|r 225 NIDAIASAAKFLAK 238 (288) Q Consensus 225 ~~Da~aS~AnyL~~ 238 (288) .|..|-.+.+++++ T Consensus 364 ~P~Gl~~~L~~~~~ 377 (489) T 1uws_A 364 FPEGLYDVLTKYWN 377 (489) T ss_dssp CTHHHHHHHHHHHH T ss_pred CCCHHHHHHHHHHH T ss_conf 86549999999988 No 25 >2opo_A Polcalcin CHE A 3; calcium-binding protein, dimer, domain-swapping, EF-hand, allergen; 1.75A {Chenopodium album} SCOP: a.39.1.10 PDB: 1h4b_A Probab=21.23 E-value=21 Score=15.71 Aligned_cols=48 Identities=31% Similarity=0.430 Sum_probs=19.5 Q ss_pred HHHHHHHHHC---CCCCHHCCCCCCCCCCCCCCCHHHHHHC--CCCCCCCCCCCC Q ss_conf 9999998643---8777000367523578666552244421--536789998788 Q gi|254780308|r 172 FFYALDLVKK---GVISSHALGATFGEIGQFQFLPVNVVKY--AIDADEDGKIDL 221 (288) Q Consensus 172 l~a~l~~~~~---g~~~~~~~GS~aGa~G~~QFmPs~~~~y--avD~dgdG~~dl 221 (288) |..+.+.++. |.|+...+...-..+|. ..+...... .+|-||||++|. T Consensus 13 l~~~F~~~D~d~~G~I~~~El~~~l~~lg~--~~~~e~~~~~~~~D~~~dg~I~~ 65 (86) T 2opo_A 13 RERIFKRFDTNGDGKISSSELGDALKTLGS--VTPDEVRRMMAEIDTDGDGFISF 65 (86) T ss_dssp HHHHHHHHCTTCSSEEEHHHHHHHHHTTTT--CCHHHHHHHHHHHCTTCSSEECH T ss_pred HHHHHHHHCCCCCCCCCHHHHHHHHHHCCC--CCHHHHHHHHHHHCCCCCCCEEH T ss_conf 999999986898597969999999998089--99999999999868998990809 No 26 >2ksc_A Cyanoglobin; hemeprotein, 2/2 hemoglobin, GLBN, TRHBN, unknown function; HET: HEB; NMR {Synechococcus SP} Probab=21.07 E-value=41 Score=14.02 Aligned_cols=27 Identities=15% Similarity=0.075 Sum_probs=16.1 Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHH Q ss_conf 532346999999983899889445231 Q gi|254780308|r 111 KKANSRLLINLKKEYGVPPGILMALWG 137 (288) Q Consensus 111 ~~~~~~~L~~ie~~yGV~~~ii~AiwG 137 (288) +......|.++=++.|||++.+-.++. T Consensus 83 fd~~l~~l~~al~e~~~~~~~~~~~~~ 109 (123) T 2ksc_A 83 FDAIAENLVLTLQELNVSQDLIDEVVT 109 (123) T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHH T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHH T ss_conf 999999999999984999999999999 No 27 >2kn2_A Calmodulin; S MAPK phosphatase 1, NTMKP1, tobacco MKP1, metal binding Pro; NMR {Glycine max} Probab=20.86 E-value=25 Score=15.28 Aligned_cols=12 Identities=8% Similarity=0.512 Sum_probs=5.9 Q ss_pred CCCHHHHHHHHH Q ss_conf 779899987640 Q gi|254780308|r 88 PVSFKDYLDGLS 99 (288) Q Consensus 88 ~~t~~~Y~~~~v 99 (288) +.+|.++++... T Consensus 61 ~I~~~eF~~~~~ 72 (92) T 2kn2_A 61 QVNYEEFVKMMM 72 (92) T ss_dssp SEEHHHHHHHHH T ss_pred CEEHHHHHHHHH T ss_conf 593999999999 Done!