Query         gi|254780308|ref|YP_003064721.1| putative membrane-bound lytic murein transglycosylase signal peptide protein [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 288
No_of_seqs    149 out of 1157
Neff          6.2 
Searched_HMMs 23785
Date          Mon May 30 08:13:25 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780308.hhm -d /home/congqian_1/database/pdb/pdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 1qus_A Lytic murein transglyco 100.0       0       0  578.6  23.9  238   42-280    18-319 (322)
  2 3gxr_A Goose-type lysozyme 1;   98.8 1.1E-08 4.5E-13   71.9   7.6  124  108-277    40-182 (187)
  3 3mgw_A Lysozyme G; salmon, goo  98.8 1.3E-08 5.3E-13   71.4   6.9   84  104-237    34-117 (181)
  4 1gbs_A Australian black SWAN e  98.7 3.2E-08 1.3E-12   69.0   7.8  124  105-278    39-181 (185)
  5 1qsa_A Protein (soluble lytic   98.4 8.8E-07 3.7E-11   60.3   6.7   58  180-239   477-537 (618)
  6 3fi7_A LMO1076 protein; lister  96.5  0.0016 6.8E-08   40.6   3.7  131  108-276    31-176 (183)
  7 2zyc_A Peptidoglycan hydrolase  96.5  0.0019   8E-08   40.2   3.6   39  107-145     2-40  (170)
  8 3eo5_A Resuscitation-promoting  71.3     5.5 0.00023   19.3   6.5   65  173-242    94-159 (171)
  9 3h4s_E KCBP interacting Ca2+-b  63.7     4.1 0.00017   20.0   2.8   55  168-222    38-97  (135)
 10 1qvb_A Beta-glycosidase; TIM-b  57.8     9.9 0.00042   17.7   4.1   48  115-182   368-415 (481)
 11 3csq_A Morphogenesis protein 1  49.2      14 0.00058   16.9   4.2   37   42-78     14-54  (334)
 12 1dlw_A Hemoglobin; oxygen stor  44.6      16 0.00068   16.5   3.6   34   38-71     74-107 (116)
 13 2v94_A RPS24, 30S ribosomal pr  40.1     8.4 0.00035   18.2   1.2   31  115-146    42-72  (107)
 14 1c7v_A CAVP, calcium vector pr  36.0     7.4 0.00031   18.5   0.4   53  169-221     7-64  (81)
 15 1dly_A Hemoglobin; oxygen stor  35.4      23 0.00095   15.6   3.6   26  113-138   125-150 (164)
 16 1jko_C HIN recombinase, DNA-in  34.6      15 0.00062   16.7   1.7   37   96-133     3-39  (52)
 17 2gkm_A TRHBN, hemoglobin-like   32.3      25  0.0011   15.3   3.7   28  111-138    91-118 (136)
 18 1ywx_A 30S ribosomal protein S  29.9      11 0.00047   17.4   0.5   42  115-157    33-76  (102)
 19 1q80_A SCP, sarcoplasmic calci  29.6      28  0.0012   15.0   3.2   79  155-240    79-162 (174)
 20 2g8y_A Malate/L-lactate dehydr  29.4      19 0.00079   16.0   1.6   43  209-255   297-340 (385)
 21 1yx7_A Calsensin, LAN3-6 antig  29.3      20 0.00083   15.9   1.7   52  170-221     7-68  (83)
 22 2k7c_A CABP1, calbrain, calciu  27.6      17 0.00071   16.3   1.1   51  170-221     7-63  (72)
 23 2zux_A YESW protein; beta-prop  21.9      20 0.00084   15.9   0.6   13  210-222   330-342 (591)
 24 1uws_A Beta-galactosidase; gly  21.7      40  0.0017   14.1   4.6   14  225-238   364-377 (489)
 25 2opo_A Polcalcin CHE A 3; calc  21.2      21  0.0009   15.7   0.6   48  172-221    13-65  (86)
 26 2ksc_A Cyanoglobin; hemeprotei  21.1      41  0.0017   14.0   4.4   27  111-137    83-109 (123)
 27 2kn2_A Calmodulin; S MAPK phos  20.9      25  0.0011   15.3   0.9   12   88-99     61-72  (92)

No 1  
>1qus_A Lytic murein transglycosylase B; alpha-helical protein with AN five-stranded antiparallel beta-sheet, hydrolase; HET: BCN; 1.70A {Escherichia coli} SCOP: d.2.1.6 PDB: 1d0k_A* 1d0m_A* 1qdr_A* 1qdt_A 1d0l_A* 1qut_A* 1ltm_A*
Probab=100.00  E-value=0  Score=578.64  Aligned_cols=238  Identities=24%  Similarity=0.422  Sum_probs=219.5

Q ss_pred             HHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCHHHHHHCCCCC--------CCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             8999999999999839998999998608777702333202566--------66777989998764001357999998532
Q gi|254780308|r   42 FGEWKSAARARAVREGMSPKTAKHLFADLEYLDTTIARDRKMV--------TSPPVSFKDYLDGLSSSEIIAQGIALKKA  113 (288)
Q Consensus        42 F~~wl~~l~~~A~~~Gis~~tl~~~f~~~~~~~~VI~~dr~Qp--------~ef~~t~~~Y~~~~vs~~Ri~~Gr~~~~~  113 (288)
                      ..++...+...+.++|+++++++.+|++++++++||++|++|+        +++++||.+|++++|++.||+.|++++++
T Consensus        18 ~p~~~~fi~~~a~~~g~~~~~l~~~f~~~k~~~~vi~~~~~q~~~~~~~~p~~~~~~w~~Y~~~~v~~~ri~~G~~~~~~   97 (322)
T 1qus_A           18 NPNAQQFIDKMVNKHGFDRQQLQEILSQAKRLDSVLRLMDNQAPTTSVKPPSGPNGAWLRYRKKFITPDNVQNGVVFWNQ   97 (322)
T ss_dssp             CHHHHHHHHHHHHHHCCCHHHHHHHHTTCCCCHHHHHHHHCC----------CCSCHHHHHHTTTCSHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHH
T ss_conf             98899999999998099999999999719576999998863675444688512367799999985899999999999999


Q ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHCCCCCHHHCCCCCHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHCCCCCHHC-CCC
Q ss_conf             3469999999838998894452310022101025641899998753275-31566547899999986438777000-367
Q gi|254780308|r  114 NSRLLINLKKEYGVPPGILMALWGLETHFGETMGKTPLLSTLATLAYDC-RRAKFFTEQFFYALDLVKKGVISSHA-LGA  191 (288)
Q Consensus       114 ~~~~L~~ie~~yGV~~~ii~AiwGiET~yG~~~G~~~vl~aLaTLA~d~-RR~~ff~~el~a~l~~~~~g~~~~~~-~GS  191 (288)
                      |+++|++||++|||||+||+|||||||+||+++|+++|+++|+||||++ ||++||++||+++|+|++++++++.. +||
T Consensus        98 ~~~~l~~ie~~yGVp~~ii~AiwGvET~yG~~~G~~~v~~aLaTLA~~~~rr~~ff~~eL~~~l~i~~~~~~~~~~l~GS  177 (322)
T 1qus_A           98 YEDALNRAWQVYGVPPEIIVGIIGVETRWGRVMGKTRILDALATLSFNYPRRAEYFSGELETFLLMARDEQDDPLNLKGS  177 (322)
T ss_dssp             THHHHHHHHHHHCCCHHHHHHHHHHHHTTTTCCCCEEHHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHTTCCGGGCEEC
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHEEEECCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
T ss_conf             99999999999795988875620355310124588618999999997246157789999999999987079885768535


Q ss_pred             CCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCC----------------------
Q ss_conf             5235786665522444215367899987887898889999999999729888589764----------------------
Q gi|254780308|r  192 TFGEIGQFQFLPVNVVKYAIDADEDGKIDLVKSNIDAIASAAKFLAKLGWTKCAGYQP----------------------  249 (288)
Q Consensus       192 ~aGa~G~~QFmPs~~~~yavD~dgdG~~dl~~~~~Da~aS~AnyL~~~GW~~g~~~~~----------------------  249 (288)
                      |||||||||||||||++||||||||||+|||++ +|||||+||||++|||++|+||..                      
T Consensus       178 wAGAmG~~QFMPSsy~~yAvD~DgDG~~Diwn~-~DaiaS~ANYL~~~GW~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (322)
T 1qus_A          178 FAGAMGYGQFMPSSYKQYAVDFSGDGHINLWDP-VDAIGSVANYFKAHGWVKGDQVAVMANGQAPGLPNGFKTKYSISQL  256 (322)
T ss_dssp             TTCCBTTTTBCHHHHHHHCCCCSSSSCCCTTSH-HHHHHHHHHHHHHTTCCTTCCSEEEEESCCTTSCCEEEEEEEHHHH
T ss_pred             HHHHCCCCCCCHHHHHHHCCCCCCCCCCCCCCC-HHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCCHHHHH
T ss_conf             244457875043678751637799986553683-2159899999998299889955898257654464567621129999


Q ss_pred             --------------------------------CCHHHHHHHHHHCHHHHHHHHHHHHHHHCCC
Q ss_conf             --------------------------------5345899998526289999999999996899
Q gi|254780308|r  250 --------------------------------GEKNFAILKHWNASLNYNKTIAYIAAHIDGV  280 (288)
Q Consensus       250 --------------------------------~~~n~~~~~~~n~s~~y~~~v~~~a~~~~g~  280 (288)
                                                      +.+||+||++||+|..|+++|++||++|.++
T Consensus       257 ~~~Gv~~~~~~~~~~~~~~l~l~~g~~~~~~L~~~NF~vI~~yN~S~~YAlaV~~Lad~I~~~  319 (322)
T 1qus_A          257 AAAGLTPQQPLGNHQQASLLRLDVGTGYQYWYGLPNFYTITRYNHSTHYAMAVWQLGQAVALA  319 (322)
T ss_dssp             HHTTCEESSCCTTCCEEEEEEEECSSSEEEEEECHHHHHHHTTSSCHHHHHHHHHHHHHHHHH
T ss_pred             HHCCCCCCCCCCCCCCCCEEECCCCCCCEEEEECCCHHHHHHHHCCHHHHHHHHHHHHHHHHH
T ss_conf             875887688898645574575458888716997578999988418498999999999999873


No 2  
>3gxr_A Goose-type lysozyme 1; atlantic COD, FISH lysozyme, active site residues, substrate binding sites, surface potential, muramidase activity; HET: NAG; 1.70A {Gadus morhua} PDB: 3gxk_A*
Probab=98.82  E-value=1.1e-08  Score=71.87  Aligned_cols=124  Identities=14%  Similarity=0.167  Sum_probs=79.5

Q ss_pred             HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCHHHCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCHH
Q ss_conf             99853234699999998389988944523100221010256418999987532753156654789999998643877700
Q gi|254780308|r  108 IALKKANSRLLINLKKEYGVPPGILMALWGLETHFGETMGKTPLLSTLATLAYDCRRAKFFTEQFFYALDLVKKGVISSH  187 (288)
Q Consensus       108 r~~~~~~~~~L~~ie~~yGV~~~ii~AiwGiET~yG~~~G~~~vl~aLaTLA~d~RR~~ff~~el~a~l~~~~~g~~~~~  187 (288)
                      ...+.+|+.++.++.++|||||.+|+||.-.||+|+....+                                   ....
T Consensus        40 ~~~~~~y~~~i~~aa~~~gvdp~Ll~Aii~~ES~f~~~a~~-----------------------------------~~~~   84 (187)
T 3gxr_A           40 AGRMEKYKSFINNVAKKHVVDPAVIAAIISRESRAGNVIFN-----------------------------------TTPP   84 (187)
T ss_dssp             HHHHHTTHHHHHHHHHHHTCCHHHHHHHHHHHHTTTTTTTT-----------------------------------SSST
T ss_pred             HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCC-----------------------------------CCCC
T ss_conf             87699999999999999691999999999975378832114-----------------------------------5777


Q ss_pred             CCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCC--C-CCCCCCCCCHHHHHHHHHHCH-
Q ss_conf             036752357866655224442153678999878878988899999999997298--8-858976453458999985262-
Q gi|254780308|r  188 ALGATFGEIGQFQFLPVNVVKYAIDADEDGKIDLVKSNIDAIASAAKFLAKLGW--T-KCAGYQPGEKNFAILKHWNAS-  263 (288)
Q Consensus       188 ~~GS~aGa~G~~QFmPs~~~~yavD~dgdG~~dl~~~~~Da~aS~AnyL~~~GW--~-~g~~~~~~~~n~~~~~~~n~s-  263 (288)
                      ..+|.+||+|.||+||+++..          .++|+ +.+.|...+.||+..==  + +-..|.+...-..+|..||.- 
T Consensus        85 g~~S~~ga~GlMQi~p~t~~~----------~~~~d-p~~nI~~g~~~l~~~l~~~~~~~~~~~~~~~~~~alaAYNaG~  153 (187)
T 3gxr_A           85 GWGDNYNGFGLMQVDKRYHEP----------RGAWN-SEEHIDQATGILVNFIQLIQKKFPSWSTEQQLKGAIAAYNTGD  153 (187)
T ss_dssp             TEETTTTEETTTTEETTTSCC----------CSCTT-SHHHHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHCG
T ss_pred             CCCCCCCCCCCCCCCCHHCCC----------CCCCC-HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCC
T ss_conf             786876550005237111254----------57889-8999999999999999999975678886867999999971370


Q ss_pred             ---------------HHHHHHHHHHHHHH
Q ss_conf             ---------------89999999999996
Q gi|254780308|r  264 ---------------LNYNKTIAYIAAHI  277 (288)
Q Consensus       264 ---------------~~y~~~v~~~a~~~  277 (288)
                                     ..|+.-|..-+...
T Consensus       154 g~V~~~~~~~~~~~t~~Yv~~Vl~ra~~y  182 (187)
T 3gxr_A          154 GRVESYESVDSRTTGKDYSNDVVARAQWY  182 (187)
T ss_dssp             GGCCCSTTTTTTSGGGCHHHHHHHHHHHH
T ss_pred             HHHHHCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf             64542158999701578999999999999


No 3  
>3mgw_A Lysozyme G; salmon, goose-type, differential scanning calorime refolding, thermal tolerance, innate immunity, hydrolase; 1.75A {Salmo salar}
Probab=98.78  E-value=1.3e-08  Score=71.44  Aligned_cols=84  Identities=13%  Similarity=0.192  Sum_probs=63.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCHHHCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCC
Q ss_conf             79999985323469999999838998894452310022101025641899998753275315665478999999864387
Q gi|254780308|r  104 IAQGIALKKANSRLLINLKKEYGVPPGILMALWGLETHFGETMGKTPLLSTLATLAYDCRRAKFFTEQFFYALDLVKKGV  183 (288)
Q Consensus       104 i~~Gr~~~~~~~~~L~~ie~~yGV~~~ii~AiwGiET~yG~~~G~~~vl~aLaTLA~d~RR~~ff~~el~a~l~~~~~g~  183 (288)
                      ...-...+.+|+.++.++.++|||||.+|+||+-.||+++...                                     
T Consensus        34 ~~~d~~~~~~y~~~i~~aa~~~gvdp~ll~Ai~~~ES~~~~~~-------------------------------------   76 (181)
T 3mgw_A           34 AEHDLVRMNKYKELITRVGQKHGLDPAIIAGIISRESRAGSAL-------------------------------------   76 (181)
T ss_dssp             HHHHHHHHHTTHHHHHHHHHHHTCCHHHHHHHHHHHHTTTTTC-------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCC-------------------------------------
T ss_conf             8988998999999999999996929999999999874775247-------------------------------------


Q ss_pred             CCHHCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf             770003675235786665522444215367899987887898889999999999
Q gi|254780308|r  184 ISSHALGATFGEIGQFQFLPVNVVKYAIDADEDGKIDLVKSNIDAIASAAKFLA  237 (288)
Q Consensus       184 ~~~~~~GS~aGa~G~~QFmPs~~~~yavD~dgdG~~dl~~~~~Da~aS~AnyL~  237 (288)
                       .+ ..+|.+||.|.||+||++.          +..|+|+ +.+.|-..+.||+
T Consensus        77 -~~-~a~S~~gA~GLMQi~p~ta----------~~~~~~d-p~~ni~~g~~~l~  117 (181)
T 3mgw_A           77 -DH-GWGDHGKGFGLMQVDKRYH----------KIVGAWD-SEKHISQGTEILI  117 (181)
T ss_dssp             -BT-TEETTTTEETTTTEETTTS----------CCCSCTT-SHHHHHHHHHHHH
T ss_pred             -CC-CCCCCCCCCCCCCCCCCCC----------CCCCCCC-HHHHHHHHHHHHH
T ss_conf             -88-8868888836300166435----------6467789-8999999999999


No 4  
>1gbs_A Australian black SWAN egg white lysozyme; hydrolase (O-glycosyl); 1.50A {Cygnus atratus} SCOP: d.2.1.5 PDB: 1lsp_A* 153l_A 154l_A*
Probab=98.73  E-value=3.2e-08  Score=69.04  Aligned_cols=124  Identities=12%  Similarity=0.151  Sum_probs=77.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCHHHCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCC
Q ss_conf             99999853234699999998389988944523100221010256418999987532753156654789999998643877
Q gi|254780308|r  105 AQGIALKKANSRLLINLKKEYGVPPGILMALWGLETHFGETMGKTPLLSTLATLAYDCRRAKFFTEQFFYALDLVKKGVI  184 (288)
Q Consensus       105 ~~Gr~~~~~~~~~L~~ie~~yGV~~~ii~AiwGiET~yG~~~G~~~vl~aLaTLA~d~RR~~ff~~el~a~l~~~~~g~~  184 (288)
                      ..-...+.+++.++.++.++|||||.+|.||.-.||+|....-                                     
T Consensus        39 ~~d~~~~~~y~~~i~~aa~~~gvdp~ll~Aii~~ES~f~~~a~-------------------------------------   81 (185)
T 1gbs_A           39 ERDLKAMDRYKTIIKKVGEKLCVEPAVIAGIISRESHAGKVLK-------------------------------------   81 (185)
T ss_dssp             HHHHHHHHTSHHHHHHHHHHHTCCHHHHHHHHHHHHGGGTTCB-------------------------------------
T ss_pred             HCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCC-------------------------------------
T ss_conf             6015458999999999999939599999999998568999894-------------------------------------


Q ss_pred             CHHCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCC--CC-CCCCCCCCCHHHHHHHHHH
Q ss_conf             70003675235786665522444215367899987887898889999999999729--88-8589764534589999852
Q gi|254780308|r  185 SSHALGATFGEIGQFQFLPVNVVKYAIDADEDGKIDLVKSNIDAIASAAKFLAKLG--WT-KCAGYQPGEKNFAILKHWN  261 (288)
Q Consensus       185 ~~~~~GS~aGa~G~~QFmPs~~~~yavD~dgdG~~dl~~~~~Da~aS~AnyL~~~G--W~-~g~~~~~~~~n~~~~~~~n  261 (288)
                        .-.||-++|+|.|||||+++..++          +|+ +.+.|.-.+.||+..=  +. ....|.....-..+|-.||
T Consensus        82 --s~~g~~~~A~GLMQi~p~t~~~~~----------~~d-p~~nI~~g~~~L~~~~~~~~~~~~~~~~~~~l~~alaAYN  148 (185)
T 1gbs_A           82 --NGWGDRGNGFGLMQVDKRSHKPQG----------TWN-GEVHITQGTTILTDFIKRIQKKFPSWTKDQQLKGGISAYN  148 (185)
T ss_dssp             --TTBCTTSCEETTTTEETTTSCCCS----------CTT-SHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHH
T ss_pred             --CCCCCCCCCEEEEEECHHHHCCCC----------CCC-HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHC
T ss_conf             --888899986445400701201015----------899-7772999999999999998542787875423999999983


Q ss_pred             C----------------HHHHHHHHHHHHHHHC
Q ss_conf             6----------------2899999999999968
Q gi|254780308|r  262 A----------------SLNYNKTIAYIAAHID  278 (288)
Q Consensus       262 ~----------------s~~y~~~v~~~a~~~~  278 (288)
                      .                ...|+..|...+....
T Consensus       149 aG~g~V~~~~~~~~~~~~~~Yv~~Vl~ra~~y~  181 (185)
T 1gbs_A          149 AGAGNVRSYARMDIGTTHDDYANDVVARAQYYK  181 (185)
T ss_dssp             HCGGGCCCSTTTTTTSGGGCHHHHHHHHHHHHH
T ss_pred             CCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf             371367761689998534789999999999998


No 5  
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=98.35  E-value=8.8e-07  Score=60.33  Aligned_cols=58  Identities=12%  Similarity=0.141  Sum_probs=42.2

Q ss_pred             HCCCCCHHCCCCCCCCCCCCCCCHHHHHHCCCCCCCC---CCCCCCCCHHHHHHHHHHHHHHC
Q ss_conf             4387770003675235786665522444215367899---98788789888999999999972
Q gi|254780308|r  180 KKGVISSHALGATFGEIGQFQFLPVNVVKYAIDADED---GKIDLVKSNIDAIASAAKFLAKL  239 (288)
Q Consensus       180 ~~g~~~~~~~GS~aGa~G~~QFmPs~~~~yavD~dgd---G~~dl~~~~~Da~aS~AnyL~~~  239 (288)
                      ++-..++..+ |.+||+|.||+||+|-...|....-+   ...+|. ++...|.-.+.||+..
T Consensus       477 qES~F~~~a~-S~agA~GLMQlmP~Ta~~~a~~~~~~~~~~~~~l~-dp~~Ni~lG~~yl~~l  537 (618)
T 1qsa_A          477 QESAWNPKVK-SPVGASGLMQIMPGTATHTVKMFSIPGYSSPGQLL-DPETNINIGTSYLQYV  537 (618)
T ss_dssp             HHHTTCTTCB-CTTCCBTTTTBCHHHHHHHHHHHTCCSCCCGGGGG-SHHHHHHHHHHHHHHH
T ss_pred             HHHCCCCCCC-CCCCCEEHHHCCHHHHHHHHHHCCCCCCCCHHHHC-CHHHHHHHHHHHHHHH
T ss_conf             9816999871-69998200511789999999983998778866727-9999999999999999


No 6  
>3fi7_A LMO1076 protein; listeria monocytogenes, autolysin, N acetylglucosaminidase, peptidoglycan hydrolase, autoinhibition, GH73; 2.35A {Undefined}
Probab=96.54  E-value=0.0016  Score=40.62  Aligned_cols=131  Identities=16%  Similarity=0.216  Sum_probs=71.2

Q ss_pred             HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCHHHCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCHH
Q ss_conf             99853234699999998389988944523100221010256418999987532753156654789999998643877700
Q gi|254780308|r  108 IALKKANSRLLINLKKEYGVPPGILMALWGLETHFGETMGKTPLLSTLATLAYDCRRAKFFTEQFFYALDLVKKGVISSH  187 (288)
Q Consensus       108 r~~~~~~~~~L~~ie~~yGV~~~ii~AiwGiET~yG~~~G~~~vl~aLaTLA~d~RR~~ff~~el~a~l~~~~~g~~~~~  187 (288)
                      ++|.+++...-.++.++|||||++++|-..+||.||+.           .||-.+- ..+|                  .
T Consensus        31 ~~fi~~~~~~a~~~~~~ygI~ps~~lAQailESGwG~S-----------~la~~~n-~NlF------------------G   80 (183)
T 3fi7_A           31 QTFINSISTQAMDLCKKYNLYPSVMIAQAALESNWGRS-----------ELGKAPN-YNLF------------------G   80 (183)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHTTTTS-----------TTTSTTT-CCTT------------------C
T ss_pred             HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCC-----------CCCCCCC-CCCC------------------C
T ss_conf             99999999999999999694989999999997479988-----------6566777-2503------------------4


Q ss_pred             CCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCC------CCCCHHHHHHHHHHHHHHCCCCCC----CCCCCCCHHHH--
Q ss_conf             036752357866655224442153678999878------878988899999999997298885----89764534589--
Q gi|254780308|r  188 ALGATFGEIGQFQFLPVNVVKYAIDADEDGKID------LVKSNIDAIASAAKFLAKLGWTKC----AGYQPGEKNFA--  255 (288)
Q Consensus       188 ~~GS~aGa~G~~QFmPs~~~~yavD~dgdG~~d------l~~~~~Da~aS~AnyL~~~GW~~g----~~~~~~~~n~~--  255 (288)
                      ++++|.|.   ..-+++     ....+|.+...      -+.|..|.+..-+++|..+..-..    ..+........  
T Consensus        81 ika~~~~~---~~~~~t-----~e~~~~~~~~~~~~~f~~y~s~~~sv~dy~~~L~~~~~y~~~~~~~~~~~~~~~~~~~  152 (183)
T 3fi7_A           81 IKGSYNGK---SVTMKT-----WEYSDSKGWYQINANFAKYPSHKESLEDNAKKLRNGPSWDSSYYKGAWRENAKTYKDA  152 (183)
T ss_dssp             CBSCBTTB---EEEEEE-----EEEETTTEEEEEEEEEECCSSHHHHHHHHHHHHHHCCTTCTTTTGGGSTTTCSSHHHH
T ss_pred             CCCCCCCC---CCCCCC-----EEECCCCCCEEEEEEEEEECCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHH
T ss_conf             31368997---557878-----3450798632322125520989999999999995596302577889998602429999


Q ss_pred             -HHH--HHHCHHHHHHHHHHHHHH
Q ss_conf             -999--852628999999999999
Q gi|254780308|r  256 -ILK--HWNASLNYNKTIAYIAAH  276 (288)
Q Consensus       256 -~~~--~~n~s~~y~~~v~~~a~~  276 (288)
                       .+.  .|-..-.|+..|..+-++
T Consensus       153 ~~l~~~gYATDp~Y~~kl~~iI~~  176 (183)
T 3fi7_A          153 TAWLQGRYATDNTYASKLNTLISS  176 (183)
T ss_dssp             HHHHBTTTBSCTTHHHHHHHHHHH
T ss_pred             HHHHHCCCCCCHHHHHHHHHHHHH
T ss_conf             999977886880599999999998


No 7  
>2zyc_A Peptidoglycan hydrolase FLGJ; 1.74A {Sphingomonas SP}
Probab=96.46  E-value=0.0019  Score=40.20  Aligned_cols=39  Identities=28%  Similarity=0.345  Sum_probs=35.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCHHH
Q ss_conf             999853234699999998389988944523100221010
Q gi|254780308|r  107 GIALKKANSRLLINLKKEYGVPPGILMALWGLETHFGET  145 (288)
Q Consensus       107 Gr~~~~~~~~~L~~ie~~yGV~~~ii~AiwGiET~yG~~  145 (288)
                      .++|.++....=.++.++|||||++++|-+.+||.+|+.
T Consensus         2 ~~~Fi~~~~~~A~~~a~~~GIp~si~lAQA~lESGwG~S   40 (170)
T 2zyc_A            2 AQAFVDATWPQAAKAAQSLGVPAHFLVAQAALETGWGKS   40 (170)
T ss_dssp             CHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHTTTTT
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCC
T ss_conf             699999999999999999397989999999998479987


No 8  
>3eo5_A Resuscitation-promoting factor RPFB; cell adhesion, crystal; 1.83A {Mycobacterium tuberculosis} PDB: 1xsf_A
Probab=71.27  E-value=5.5  Score=19.30  Aligned_cols=65  Identities=20%  Similarity=0.168  Sum_probs=43.9

Q ss_pred             HHHHHHHHCCCCCHHCCCCCCCCCCCCCCCHHHHHHCC-CCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC
Q ss_conf             99999864387770003675235786665522444215-36789998788789888999999999972988
Q gi|254780308|r  173 FYALDLVKKGVISSHALGATFGEIGQFQFLPVNVVKYA-IDADEDGKIDLVKSNIDAIASAAKFLAKLGWT  242 (288)
Q Consensus       173 ~a~l~~~~~g~~~~~~~GS~aGa~G~~QFmPs~~~~ya-vD~dgdG~~dl~~~~~Da~aS~AnyL~~~GW~  242 (288)
                      .+.|.-|+-|.--.-  -+--|+-|..||-|+||..++ .++-  ++.|+ -|..+-++-+-+.+...||.
T Consensus        94 w~~~a~cES~gn~~~--n~~~g~yG~~Qf~~~tw~~~gg~~~~--~~~~~-As~~~Q~~~a~~~~~~~G~~  159 (171)
T 3eo5_A           94 WDAIAGCEAGGNWAI--NTGNGYYGGVQFDQGTWEANGGLRYA--PRADL-ATREEQIAVAEVTRLRQGWG  159 (171)
T ss_dssp             HHHHHHHHHTTCTTC--CCSSSCBTTTTBCHHHHHHTTGGGTC--SSGGG-SCHHHHHHHHHHHHHHHCST
T ss_pred             CHHHHHCCCCCCCEE--CCCCCCEEEEEECHHHHHHCCCCCCC--CCHHH-CCHHHHHHHHHHHHHHCCCC
T ss_conf             476640036888330--18988631366556167653787678--89034-89999999999999856888


No 9  
>3h4s_E KCBP interacting Ca2+-binding protein; kinesin, motor protein, regulation, complex, calcium, EF- hand, calmodulin, ATP-binding, microtubule; HET: ADP; 2.40A {Arabidopsis thaliana}
Probab=63.73  E-value=4.1  Score=20.02  Aligned_cols=55  Identities=18%  Similarity=0.279  Sum_probs=36.0

Q ss_pred             HHHHHHHHHHHHHC---CCCCHHCCCCCCCCCCCCCCCHHHHHHC--CCCCCCCCCCCCC
Q ss_conf             54789999998643---8777000367523578666552244421--5367899987887
Q gi|254780308|r  168 FTEQFFYALDLVKK---GVISSHALGATFGEIGQFQFLPVNVVKY--AIDADEDGKIDLV  222 (288)
Q Consensus       168 f~~el~a~l~~~~~---g~~~~~~~GS~aGa~G~~QFmPs~~~~y--avD~dgdG~~dl~  222 (288)
                      -..||..+.++.+.   |.|+.+.+.....-+|.-.+-..-+...  .+|-||||+++.-
T Consensus        38 ~~eeL~~AF~~fD~d~~G~It~~eLk~v~~~lG~e~ls~eEl~~mi~e~D~d~dG~I~~~   97 (135)
T 3h4s_E           38 FVSELCKGFSLLADPERHLITAESLRRNSGILGIEGMSKEDAQGMVREGDLDGDGALNQT   97 (135)
T ss_dssp             HHHHHHHHHHHHSBTTTTBBCHHHHHHHGGGGTCCCCCHHHHHHHHHHHCSSCSSSBCHH
T ss_pred             HHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCEEHH
T ss_conf             599999999988589999759999999998738675769999999998686989969099


No 10 
>1qvb_A Beta-glycosidase; TIM-barrel, thermostable, hydrolase; 2.40A {Thermosphaera aggregans} SCOP: c.1.8.4
Probab=57.85  E-value=9.9  Score=17.74  Aligned_cols=48  Identities=23%  Similarity=0.369  Sum_probs=26.4

Q ss_pred             HHHHHHHHHHHCCCHHHHHHHHHCCCCCHHHCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCC
Q ss_conf             46999999983899889445231002210102564189999875327531566547899999986438
Q gi|254780308|r  115 SRLLINLKKEYGVPPGILMALWGLETHFGETMGKTPLLSTLATLAYDCRRAKFFTEQFFYALDLVKKG  182 (288)
Q Consensus       115 ~~~L~~ie~~yGV~~~ii~AiwGiET~yG~~~G~~~vl~aLaTLA~d~RR~~ff~~el~a~l~~~~~g  182 (288)
                      ..+|+.+.++||+|      |+=.|...|..              .|.+|.+|.++.|.++++-++.|
T Consensus       368 ~~~L~~i~~~Y~~P------i~ITENG~~~~--------------~D~~Ri~yl~~hl~~v~~Ai~dG  415 (481)
T 1qvb_A          368 YLLLKELYNRYGVD------LIVTENGVSDS--------------RDALRPAYLVSHVYSVWKAANEG  415 (481)
T ss_dssp             HHHHHHHHHHHCCE------EEEEECCCCCT--------------TCSSHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHCCC------EEEECCCCCCC--------------CCHHHHHHHHHHHHHHHHHHHCC
T ss_conf             99999998850989------89979988877--------------76589999999999999999879


No 11 
>3csq_A Morphogenesis protein 1; hydrolase, infection, late protein; 1.80A {Bacteriophage phi-29}
Probab=49.16  E-value=14  Score=16.89  Aligned_cols=37  Identities=3%  Similarity=-0.078  Sum_probs=24.5

Q ss_pred             HHHHHHHHHHHHHHCCCCHHHHHHHHCCC----CCCHHHHH
Q ss_conf             89999999999998399989999986087----77702333
Q gi|254780308|r   42 FGEWKSAARARAVREGMSPKTAKHLFADL----EYLDTTIA   78 (288)
Q Consensus        42 F~~wl~~l~~~A~~~Gis~~tl~~~f~~~----~~~~~VI~   78 (288)
                      ...=...+.+.++.+|++++.+-.++.++    .++|..+.
T Consensus        14 ~~~na~~i~~~l~~~G~s~~~aAgilgn~~~ESgfnP~a~~   54 (334)
T 3csq_A           14 MKVNAQYILNYLSSNGWTKQAICGMLGNMQSESTINPGLWQ   54 (334)
T ss_dssp             HHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHSSCTTCBG
T ss_pred             HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCHHHC
T ss_conf             37889999999998799999999999877666278822320


No 12 
>1dlw_A Hemoglobin; oxygen storage/transport complex; HET: HEM; 1.54A {Paramecium caudatum} SCOP: a.1.1.1 PDB: 1uvy_A*
Probab=44.64  E-value=16  Score=16.46  Aligned_cols=34  Identities=15%  Similarity=0.159  Sum_probs=18.3

Q ss_pred             CHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCC
Q ss_conf             8320899999999999983999899999860877
Q gi|254780308|r   38 TADRFGEWKSAARARAVREGMSPKTAKHLFADLE   71 (288)
Q Consensus        38 ~~~~F~~wl~~l~~~A~~~Gis~~tl~~~f~~~~   71 (288)
                      +...|+.|+.-+.+...+.|++.+.++.++.-+.
T Consensus        74 ~~~~fd~~~~~l~~al~e~~v~~~~~~e~~~~~~  107 (116)
T 1dlw_A           74 SNAQFTTVIGHLRSALTGAGVAAALVEQTVAVAE  107 (116)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_conf             9999999999999999984979999999999999


No 13 
>2v94_A RPS24, 30S ribosomal protein S24E; ribonucleoprotein; 1.90A {Pyrococcus abyssi} SCOP: d.12.1.3
Probab=40.11  E-value=8.4  Score=18.16  Aligned_cols=31  Identities=13%  Similarity=0.134  Sum_probs=25.4

Q ss_pred             HHHHHHHHHHHCCCHHHHHHHHHCCCCCHHHC
Q ss_conf             46999999983899889445231002210102
Q gi|254780308|r  115 SRLLINLKKEYGVPPGILMALWGLETHFGETM  146 (288)
Q Consensus       115 ~~~L~~ie~~yGV~~~ii~AiwGiET~yG~~~  146 (288)
                      ..+-+.+.+.|||+++.|+ |-++.|.||...
T Consensus        42 ~ei~~kla~~~~~~~~~vv-v~~~~t~fG~~~   72 (107)
T 2v94_A           42 KDVKGKLVAMLDLNPETTV-IQYIRSYFGSYK   72 (107)
T ss_dssp             HHHHHHHHHHHTCCGGGEE-EEEEECCTTCSE
T ss_pred             HHHHHHHHHHHCCCCCEEE-EECCEECCCCCE
T ss_conf             9999999997795978899-975774689974


No 14 
>1c7v_A CAVP, calcium vector protein; EF-hand family, calcium binding protein, metal binding protein; NMR {Branchiostoma lanceolatum} SCOP: a.39.1.5 PDB: 1c7w_A
Probab=36.03  E-value=7.4  Score=18.49  Aligned_cols=53  Identities=23%  Similarity=0.365  Sum_probs=32.8

Q ss_pred             HHHHHHHHHHHHC---CCCCHHCCCCCCCCCCCCCCCHHHHH--HCCCCCCCCCCCCC
Q ss_conf             4789999998643---87770003675235786665522444--21536789998788
Q gi|254780308|r  169 TEQFFYALDLVKK---GVISSHALGATFGEIGQFQFLPVNVV--KYAIDADEDGKIDL  221 (288)
Q Consensus       169 ~~el~a~l~~~~~---g~~~~~~~GS~aGa~G~~QFmPs~~~--~yavD~dgdG~~dl  221 (288)
                      ..+|..+.+..+.   |.|+...+..-...+|...+-.....  --.+|-||||.+|.
T Consensus         7 ee~l~~~F~~~D~d~~G~I~~~el~~~l~~lg~~~~t~~ei~~i~~~~D~d~dG~I~~   64 (81)
T 1c7v_A            7 EEEILRAFKVFDANGDGVIDFDEFKFIMQKVGEEPLTDAEVEEAMKEADEDGNGVIDI   64 (81)
T ss_dssp             CHHHHHHHHHHSCSGGGEECHHHHHHHSSTTTTCCCCHHHHHHHHHHHCSSGGGSEEH
T ss_pred             HHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCEEH
T ss_conf             9999999999838977938599999999984778898999999999858999992839


No 15 
>1dly_A Hemoglobin; oxygen storage/transport complex; HET: HEM; 1.80A {Chlamydomonas eugametos} SCOP: a.1.1.1 PDB: 1uvx_A*
Probab=35.41  E-value=23  Score=15.58  Aligned_cols=26  Identities=31%  Similarity=0.404  Sum_probs=12.2

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHC
Q ss_conf             23469999999838998894452310
Q gi|254780308|r  113 ANSRLLINLKKEYGVPPGILMALWGL  138 (288)
Q Consensus       113 ~~~~~L~~ie~~yGV~~~ii~AiwGi  138 (288)
                      .....|..+=++.|||++.+-.++.+
T Consensus       125 ~~l~~l~~al~e~gv~~~~~~ei~~~  150 (164)
T 1dly_A          125 AVARHLSDTLTELGVPPEDITDAMAV  150 (164)
T ss_dssp             HHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf             99999999999839999999999999


No 16 
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=34.63  E-value=15  Score=16.69  Aligned_cols=37  Identities=14%  Similarity=-0.000  Sum_probs=25.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
Q ss_conf             76400135799999853234699999998389988944
Q gi|254780308|r   96 DGLSSSEIIAQGIALKKANSRLLINLKKEYGVPPGILM  133 (288)
Q Consensus        96 ~~~vs~~Ri~~Gr~~~~~~~~~L~~ie~~yGV~~~ii~  133 (288)
                      +..+++..+...++++..- ....+|.+.|||.+..|-
T Consensus         3 p~kLt~~q~~~a~~l~~~G-~s~~~iA~~~gVsr~TlY   39 (52)
T 1jko_C            3 PRAINKHEQEQISRLLEKG-HPRQQLAIIFGIGVSTLY   39 (52)
T ss_dssp             CCSSCTTHHHHHHHHHHTT-CCHHHHHHTTSCCHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHCC-CCHHHHHHHHCCCHHHHH
T ss_conf             9879999999999999978-989999999797999999


No 17 
>2gkm_A TRHBN, hemoglobin-like protein HBN, flavohemoglobin; truncated hemoglobin, mutant, oxygen storage/transport complex; HET: HEM; 1.73A {Mycobacterium tuberculosis} PDB: 1idr_A* 1rte_A* 1s56_A* 1s61_A* 2gl3_A* 2gln_A* 2gkn_A*
Probab=32.34  E-value=25  Score=15.28  Aligned_cols=28  Identities=18%  Similarity=0.251  Sum_probs=14.1

Q ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHC
Q ss_conf             5323469999999838998894452310
Q gi|254780308|r  111 KKANSRLLINLKKEYGVPPGILMALWGL  138 (288)
Q Consensus       111 ~~~~~~~L~~ie~~yGV~~~ii~AiwGi  138 (288)
                      +......|.++=++.|||.+.+..++.+
T Consensus        91 f~~~~~~l~~al~e~~v~~~~~~~~l~~  118 (136)
T 2gkm_A           91 FSLVAGHLADALTAAGVPSETITEILGV  118 (136)
T ss_dssp             HHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf             9999999999999829799999999999


No 18 
>1ywx_A 30S ribosomal protein S24E; GFT MRR16, nesgc, structural genomics, PSI, protein structure initiative; NMR {Methanococcus maripaludis} SCOP: d.12.1.3
Probab=29.86  E-value=11  Score=17.44  Aligned_cols=42  Identities=14%  Similarity=0.213  Sum_probs=29.1

Q ss_pred             HHHHHHHHHHHCCCHHHHHHHHHCCCCCHHH--CCCCCHHHHHHH
Q ss_conf             4699999998389988944523100221010--256418999987
Q gi|254780308|r  115 SRLLINLKKEYGVPPGILMALWGLETHFGET--MGKTPLLSTLAT  157 (288)
Q Consensus       115 ~~~L~~ie~~yGV~~~ii~AiwGiET~yG~~--~G~~~vl~aLaT  157 (288)
                      ..+-+++.+.||+++..|+ |-++.|.||..  +|-..|-++..+
T Consensus        33 ~ei~~kla~~~~~~~~~vv-v~~~~t~fG~~~s~G~a~IYds~e~   76 (102)
T 1ywx_A           33 KDVKMKLVAVLNANKQVLV-VDTLDQIFGKLEAEGYAKIYNDEKA   76 (102)
T ss_dssp             HHHHHHHHHHHTSCSTTEE-EEEEEECSSSSEEEEEEEECSCHHH
T ss_pred             HHHHHHHHHHHCCCCCEEE-EEECEECCCCCEEEEEEEEECCHHH
T ss_conf             9999999997793978899-9806636899658899999689999


No 19 
>1q80_A SCP, sarcoplasmic calcium-binding protein; all-alpha, metal binding protein; NMR {Neanthes diversicolor} SCOP: a.39.1.5 PDB: 2scp_A
Probab=29.58  E-value=28  Score=15.00  Aligned_cols=79  Identities=19%  Similarity=0.274  Sum_probs=43.9

Q ss_pred             HHHHHCCCCHHHHHHHHHHHHHHHHHC---CCCCHHCCCCCCCCCCCCCCCHHHHHHC--CCCCCCCCCCCCCCCHHHHH
Q ss_conf             987532753156654789999998643---8777000367523578666552244421--53678999878878988899
Q gi|254780308|r  155 LATLAYDCRRAKFFTEQFFYALDLVKK---GVISSHALGATFGEIGQFQFLPVNVVKY--AIDADEDGKIDLVKSNIDAI  229 (288)
Q Consensus       155 LaTLA~d~RR~~ff~~el~a~l~~~~~---g~~~~~~~GS~aGa~G~~QFmPs~~~~y--avD~dgdG~~dl~~~~~Da~  229 (288)
                      +..+.......+..+..+..+.+.++.   |.|+.+.+-.+-.++|.+   +......  .+|-||||+++.-    +=+
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~F~~~D~d~dG~I~~~E~~~~~~~~~~~---~~~~~~~f~~~D~d~dG~Is~~----Ef~  151 (174)
T 1q80_A           79 MKEMVKNPEAKSVVEGPLPLFFRAVDTNEDNNISRDEYGIFFGMLGLD---KTMAPASFDAIDTNNDGLLSLE----EFV  151 (174)
T ss_dssp             HHHHTTSTTCHHHHHTHHHHHHHHHCTTSSSSBCHHHHHHHHHHHTCC---GGGHHHHHHHHCTTCSSSBCHH----HHH
T ss_pred             HHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCC---HHHHHHHHHHCCCCCCCCEEHH----HHH
T ss_conf             988750002678899999987651377899914299999999983989---9999999997087989948499----999


Q ss_pred             HHHHHHHHHCC
Q ss_conf             99999999729
Q gi|254780308|r  230 ASAAKFLAKLG  240 (288)
Q Consensus       230 aS~AnyL~~~G  240 (288)
                      ...-+|+....
T Consensus       152 ~~~~~~~~~~~  162 (174)
T 1q80_A          152 IAGSDFFMNDG  162 (174)
T ss_dssp             HHHHHHHHCCC
T ss_pred             HHHHHHHHCCC
T ss_conf             99999972597


No 20 
>2g8y_A Malate/L-lactate dehydrogenases; NAD, E.coli, structural genomics, PSI, protein structure initiative, midwest center for structural genomics; HET: NAD 1PE; 2.15A {Escherichia coli K12}
Probab=29.44  E-value=19  Score=16.05  Aligned_cols=43  Identities=16%  Similarity=0.132  Sum_probs=18.1

Q ss_pred             CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCC-CCCCCCHHHH
Q ss_conf             1536789998788789888999999999972988858-9764534589
Q gi|254780308|r  209 YAIDADEDGKIDLVKSNIDAIASAAKFLAKLGWTKCA-GYQPGEKNFA  255 (288)
Q Consensus       209 yavD~dgdG~~dl~~~~~Da~aS~AnyL~~~GW~~g~-~~~~~~~n~~  255 (288)
                      .++|-+--+-.+ |.   .-+.+..++++..-=..+. -+-||++-++
T Consensus       297 i~Idp~~F~~~~-f~---~~~~~~~~~ik~~p~~~~~~V~~PGE~e~~  340 (385)
T 2g8y_A          297 IIINPELFGAPD-CN---AQTEAFAEWVKASPHDDDKPILLPGEWEVN  340 (385)
T ss_dssp             EEECGGGSCCTT-HH---HHHHHHHHHHHTSCCCTTSCCCCTTHHHHH
T ss_pred             EEECHHHCCCHH-HH---HHHHHHHHHHHCCCCCCCCEEECCCHHHHH
T ss_conf             863778715667-99---999999999837898999935789838999


No 21 
>1yx7_A Calsensin, LAN3-6 antigen; calcium-binding protein EF-hand, helix-loop- helix, nervous system, metal binding protein; NMR {Haemopis marmorata} PDB: 1yx8_A
Probab=29.34  E-value=20  Score=15.92  Aligned_cols=52  Identities=19%  Similarity=0.289  Sum_probs=24.5

Q ss_pred             HHHHHHHHHHHC---CCCCHHCCCCCCCCCCCCCCCH-----HHHHHC--CCCCCCCCCCCC
Q ss_conf             789999998643---8777000367523578666552-----244421--536789998788
Q gi|254780308|r  170 EQFFYALDLVKK---GVISSHALGATFGEIGQFQFLP-----VNVVKY--AIDADEDGKIDL  221 (288)
Q Consensus       170 ~el~a~l~~~~~---g~~~~~~~GS~aGa~G~~QFmP-----s~~~~y--avD~dgdG~~dl  221 (288)
                      .+|..+.++.+.   |.|+.+.+...-..+|.+.-+|     ......  .+|-||||+++.
T Consensus         7 ~~l~~~F~~~D~d~dG~I~~~El~~~l~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~I~~   68 (83)
T 1yx7_A            7 AELEAAFKKLDANGDGYVTALELQTFMVTLDAYKALSKDKVKEASAKLIKMADKNSDGKISK   68 (83)
T ss_dssp             THHHHHHHHHSSSCSSSCSHHHHHHHHHHHTTCTTTTTTTTHHHHHHHHTTTCSSSCSCCSH
T ss_pred             HHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCH
T ss_conf             99999999987998291869999999998176635573225999999999938896995959


No 22 
>2k7c_A CABP1, calbrain, calcium-binding protein 1; EF-hand, calmodulin, neuron, alternative splicing, cell membrane, cytoplasm, cytoskeleton, lipoprotein; NMR {Homo sapiens} PDB: 2k7d_A
Probab=27.59  E-value=17  Score=16.35  Aligned_cols=51  Identities=22%  Similarity=0.365  Sum_probs=26.1

Q ss_pred             HHHHHHHHHHHC---CCCCHHCCCCCC-CCCCCCCCCHHHHHHC--CCCCCCCCCCCC
Q ss_conf             789999998643---877700036752-3578666552244421--536789998788
Q gi|254780308|r  170 EQFFYALDLVKK---GVISSHALGATF-GEIGQFQFLPVNVVKY--AIDADEDGKIDL  221 (288)
Q Consensus       170 ~el~a~l~~~~~---g~~~~~~~GS~a-Ga~G~~QFmPs~~~~y--avD~dgdG~~dl  221 (288)
                      +||..+.+.++.   |.|+...+..-- -.+|. +.-+......  .+|-||||+++.
T Consensus         7 ~el~~~F~~~D~d~~G~I~~~El~~~l~~~lg~-~~s~~e~~~~~~~~D~d~dG~I~~   63 (72)
T 2k7c_A            7 KELRDAFREFDTNGDGEISTSELREAMRKLLGH-QVGHRDIEEIIRDVDLNGDGRVDF   63 (72)
T ss_dssp             HHHHHHHHHHCCSSSSEECHHHHHHHHHHTTCS-SSCHHHHHHHHHHSCCCSSCCEEH
T ss_pred             HHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCC-CCCHHHHHHHHHHHCCCCCCEEEH
T ss_conf             999999999848966979799999999986298-766689999999857898982839


No 23 
>2zux_A YESW protein; beta-propeller, lyase, rhamnose complex; HET: RAM; 1.32A {Bacillus subtilis} PDB: 2z8s_A* 2z8r_A*
Probab=21.93  E-value=20  Score=15.90  Aligned_cols=13  Identities=38%  Similarity=0.677  Sum_probs=9.3

Q ss_pred             CCCCCCCCCCCCC
Q ss_conf             5367899987887
Q gi|254780308|r  210 AIDADEDGKIDLV  222 (288)
Q Consensus       210 avD~dgdG~~dl~  222 (288)
                      ..|.||||+-||.
T Consensus       330 VaDvDGDG~dDIV  342 (591)
T 2zux_A          330 IADVDGDGKDEII  342 (591)
T ss_dssp             EECCSSSSSCEEE
T ss_pred             EEECCCCCHHHEE
T ss_conf             6743899712558


No 24 
>1uws_A Beta-galactosidase; glycoside hydrolase, family 1, hydrolase, archaeon 2-deoxy- 2-fluoro-glucose; HET: G2F; 1.95A {Sulfolobus solfataricus} SCOP: c.1.8.4 PDB: 1uwr_A* 1uwq_A* 1uwt_A* 1uwu_A* 2ceq_A* 2cer_A* 1gow_A 1uwi_A
Probab=21.72  E-value=40  Score=14.10  Aligned_cols=14  Identities=0%  Similarity=-0.199  Sum_probs=7.4

Q ss_pred             HHHHHHHHHHHHHH
Q ss_conf             88899999999997
Q gi|254780308|r  225 NIDAIASAAKFLAK  238 (288)
Q Consensus       225 ~~Da~aS~AnyL~~  238 (288)
                      .|..|-.+.+++++
T Consensus       364 ~P~Gl~~~L~~~~~  377 (489)
T 1uws_A          364 FPEGLYDVLTKYWN  377 (489)
T ss_dssp             CTHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHH
T ss_conf             86549999999988


No 25 
>2opo_A Polcalcin CHE A 3; calcium-binding protein, dimer, domain-swapping, EF-hand, allergen; 1.75A {Chenopodium album} SCOP: a.39.1.10 PDB: 1h4b_A
Probab=21.23  E-value=21  Score=15.71  Aligned_cols=48  Identities=31%  Similarity=0.430  Sum_probs=19.5

Q ss_pred             HHHHHHHHHC---CCCCHHCCCCCCCCCCCCCCCHHHHHHC--CCCCCCCCCCCC
Q ss_conf             9999998643---8777000367523578666552244421--536789998788
Q gi|254780308|r  172 FFYALDLVKK---GVISSHALGATFGEIGQFQFLPVNVVKY--AIDADEDGKIDL  221 (288)
Q Consensus       172 l~a~l~~~~~---g~~~~~~~GS~aGa~G~~QFmPs~~~~y--avD~dgdG~~dl  221 (288)
                      |..+.+.++.   |.|+...+...-..+|.  ..+......  .+|-||||++|.
T Consensus        13 l~~~F~~~D~d~~G~I~~~El~~~l~~lg~--~~~~e~~~~~~~~D~~~dg~I~~   65 (86)
T 2opo_A           13 RERIFKRFDTNGDGKISSSELGDALKTLGS--VTPDEVRRMMAEIDTDGDGFISF   65 (86)
T ss_dssp             HHHHHHHHCTTCSSEEEHHHHHHHHHTTTT--CCHHHHHHHHHHHCTTCSSEECH
T ss_pred             HHHHHHHHCCCCCCCCCHHHHHHHHHHCCC--CCHHHHHHHHHHHCCCCCCCEEH
T ss_conf             999999986898597969999999998089--99999999999868998990809


No 26 
>2ksc_A Cyanoglobin; hemeprotein, 2/2 hemoglobin, GLBN, TRHBN, unknown function; HET: HEB; NMR {Synechococcus SP}
Probab=21.07  E-value=41  Score=14.02  Aligned_cols=27  Identities=15%  Similarity=0.075  Sum_probs=16.1

Q ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHH
Q ss_conf             532346999999983899889445231
Q gi|254780308|r  111 KKANSRLLINLKKEYGVPPGILMALWG  137 (288)
Q Consensus       111 ~~~~~~~L~~ie~~yGV~~~ii~AiwG  137 (288)
                      +......|.++=++.|||++.+-.++.
T Consensus        83 fd~~l~~l~~al~e~~~~~~~~~~~~~  109 (123)
T 2ksc_A           83 FDAIAENLVLTLQELNVSQDLIDEVVT  109 (123)
T ss_dssp             HHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCCHHHHHHHHH
T ss_conf             999999999999984999999999999


No 27 
>2kn2_A Calmodulin; S MAPK phosphatase 1, NTMKP1, tobacco MKP1, metal binding Pro; NMR {Glycine max}
Probab=20.86  E-value=25  Score=15.28  Aligned_cols=12  Identities=8%  Similarity=0.512  Sum_probs=5.9

Q ss_pred             CCCHHHHHHHHH
Q ss_conf             779899987640
Q gi|254780308|r   88 PVSFKDYLDGLS   99 (288)
Q Consensus        88 ~~t~~~Y~~~~v   99 (288)
                      +.+|.++++...
T Consensus        61 ~I~~~eF~~~~~   72 (92)
T 2kn2_A           61 QVNYEEFVKMMM   72 (92)
T ss_dssp             SEEHHHHHHHHH
T ss_pred             CEEHHHHHHHHH
T ss_conf             593999999999


Done!