HHSEARCH alignment of GI: 254780308 and SCOP domain: d1gbsa_

Alignment
>d1gbsa_ d.2.1.5 (A:) Lysozyme {Australian black swan (Cygnus atratus) [TaxId: 8868]}
Probab=98.81  E-value=6.6e-09  Score=71.73  Aligned_cols=124  Identities=12%  Similarity=0.154  Sum_probs=82.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCHHHCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCC
Q ss_conf             99999853234699999998389988944523100221010256418999987532753156654789999998643877
Q gi|254780308|r  105 AQGIALKKANSRLLINLKKEYGVPPGILMALWGLETHFGETMGKTPLLSTLATLAYDCRRAKFFTEQFFYALDLVKKGVI  184 (288)
Q Consensus       105 ~~Gr~~~~~~~~~L~~ie~~yGV~~~ii~AiwGiET~yG~~~G~~~vl~aLaTLA~d~RR~~ff~~el~a~l~~~~~g~~  184 (288)
                      ..-...+.+++..+.++.++|||||++|.||+-.||+|....                                      
T Consensus        39 ~~d~~~~~~y~~~i~~aa~~~~v~~~ll~ai~~~ES~f~~~a--------------------------------------   80 (185)
T d1gbsa_          39 ERDLKAMDRYKTIIKKVGEKLCVEPAVIAGIISRESHAGKVL--------------------------------------   80 (185)
T ss_dssp             HHHHHHHHTSHHHHHHHHHHHTCCHHHHHHHHHHHHGGGTTC--------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCC--------------------------------------
T ss_conf             865777899999999999982985999999999865899989--------------------------------------


Q ss_pred             CHHCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCC--CC-CCCCCCCCCHHHHHHHHHH
Q ss_conf             70003675235786665522444215367899987887898889999999999729--88-8589764534589999852
Q gi|254780308|r  185 SSHALGATFGEIGQFQFLPVNVVKYAIDADEDGKIDLVKSNIDAIASAAKFLAKLG--WT-KCAGYQPGEKNFAILKHWN  261 (288)
Q Consensus       185 ~~~~~GS~aGa~G~~QFmPs~~~~yavD~dgdG~~dl~~~~~Da~aS~AnyL~~~G--W~-~g~~~~~~~~n~~~~~~~n  261 (288)
                       ....|++++|+|.||+||+++..++          +++ +.+.|.-.+.||+..=  +. .-..|.....-..+|..||
T Consensus        81 -~s~~g~~~~A~GLMQi~p~t~~~~g----------~~d-p~~ni~~g~~~L~~~~~~~~~~~~~~~~~~~~~~alaAYN  148 (185)
T d1gbsa_          81 -KNGWGDRGNGFGLMQVDKRSHKPQG----------TWN-GEVHITQGTTILTDFIKRIQKKFPSWTKDQQLKGGISAYN  148 (185)
T ss_dssp             -BTTBCTTSCEETTTTEETTTSCCCS----------CTT-SHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHH
T ss_pred             -CCCCCCCCCCCCCCCCCCCHHHHCC----------CCC-HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHH
T ss_conf             -4989999998561000700544505----------668-8888999999999999997610788774301999999997


Q ss_pred             C----------------HHHHHHHHHHHHHHHC
Q ss_conf             6----------------2899999999999968
Q gi|254780308|r  262 A----------------SLNYNKTIAYIAAHID  278 (288)
Q Consensus       262 ~----------------s~~y~~~v~~~a~~~~  278 (288)
                      .                ...|+..|...+....
T Consensus       149 aG~g~V~~~~~~~~~~~~~~Yv~~Vl~ra~~y~  181 (185)
T d1gbsa_         149 AGAGNVRSYARMDIGTTHDDYANDVVARAQYYK  181 (185)
T ss_dssp             HCGGGCCCSTTTTTTSGGGCHHHHHHHHHHHHH
T ss_pred             HCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf             372225440479998404678999999999998


SCOP domain information

class: Alpha and beta proteins (a+b)
fold: Lysozyme-like
superfamily: Lysozyme-like
family: G-type lysozyme
domain: Lysozyme
species: Australian black swan (Cygnus atratus) [TaxId: 8868]