RPS-BLAST 2.2.22 [Sep-27-2009] Database: mmdb70 33,805 sequences; 4,956,049 total letters Searching..................................................done Query= gi|254780308|ref|YP_003064721.1| putative membrane-bound lytic murein transglycosylase signal peptide protein [Candidatus Liberibacter asiaticus str. psy62] (288 letters) >1qus_A Lytic murein transglycosylase B; alpha-helical protein with AN five-stranded antiparallel beta-sheet, hydrolase; HET: BCN; 1.70A {Escherichia coli} (A:1-65,A:130-228) Length = 164 Score = 74.9 bits (184), Expect = 1e-14 Identities = 36/101 (35%), Positives = 54/101 (53%), Gaps = 3/101 (2%) Query: 145 TMGKTPLLSTLATLAYDC-RRAKFFTEQFFYALDLVKKGVISSHAL-GATFGEIGQFQFL 202 MGKT +L LATL+++ RRA++F+ + L + + L G+ G +G QF+ Sbjct: 65 VMGKTRILDALATLSFNYPRRAEYFSGELETFLLMARDEQDDPLNLKGSFAGAMGYGQFM 124 Query: 203 PVNVVKYAIDADEDGKIDLVKSNIDAIASAAKFLAKLGWTK 243 P + +YA+D DG I+L DAI S A + GW K Sbjct: 125 PSSYKQYAVDFSGDGHINLWDPV-DAIGSVANYFKAHGWVK 164 >1qus_A Lytic murein transglycosylase B; alpha-helical protein with AN five-stranded antiparallel beta-sheet, hydrolase; HET: BCN; 1.70A {Escherichia coli} (A:66-129,A:301-322) Length = 86 Score = 64.8 bits (158), Expect = 1e-11 Identities = 13/54 (24%), Positives = 25/54 (46%) Query: 90 SFKDYLDGLSSSEIIAQGIALKKANSRLLINLKKEYGVPPGILMALWGLETHFG 143 ++ Y + + + G+ L + YGVPP I++ + G+ET +G Sbjct: 9 AWLRYRKKFITPDNVQNGVVFWNQYEDALNRAWQVYGVPPEIIVGIIGVETRWG 62 >3fi7_A LMO1076 protein; listeria monocytogenes, autolysin, N acetylglucosaminidase, peptidoglycan hydrolase, autoinhibition, GH73; 2.35A {Undefined} (A:26-72,A:139-183) Length = 92 Score = 29.2 bits (66), Expect = 0.68 Identities = 7/24 (29%), Positives = 16/24 (66%) Query: 123 KEYGVPPGILMALWGLETHFGETM 146 K+Y + P +++A LE+++G + Sbjct: 21 KKYNLYPSVMIAQAALESNWGRSE 44 >1c7v_A CAVP, calcium vector protein; EF-hand family, calcium binding protein,; NMR {Branchiostoma lanceolatum} (A:) Length = 81 Score = 27.9 bits (62), Expect = 1.6 Identities = 12/54 (22%), Positives = 19/54 (35%), Gaps = 2/54 (3%) Query: 170 EQFFYALDLVKKGVISSHALGATFGEIGQFQFLPVNVVKY--AIDADEDGKIDL 221 + F D GVI ++G+ V + D D +G ID+ Sbjct: 11 LRAFKVFDANGDGVIDFDEFKFIMQKVGEEPLTDAEVEEAMKEADEDGNGVIDI 64 >1eg3_A Dystrophin; EF-hand like domain, WW domain, structural protein; 2.00A {Homo sapiens} (A:40-261) Length = 222 Score = 27.6 bits (60), Expect = 2.0 Identities = 13/104 (12%), Positives = 26/104 (25%), Gaps = 12/104 (11%) Query: 130 GILMALWGLETHFGETMGKTPLLSTLATLAYDCRRAKFFTEQFFYALDLVKKGVISSHAL 189 + W L + G+ +LS + C+ ++ + G L Sbjct: 91 VDMCLNWLLNVYDTGRTGRIRVLSFKTGIISLCKAHLEDKYRYLFKQVASSTGFCDQRRL 150 Query: 190 GATFGEIGQFQFLPVN------------VVKYAIDADEDGKIDL 221 G + Q V A+ +I+ Sbjct: 151 GLLLHDSIQIPRQLGEVASFGGSNIEPSVRSCFQFANNKPEIEA 194 >3k21_A PFCDPK3, calcium-dependent protein kinase 3; calcium kinase structural genomics malaria, structural genomics consortium, SGC, ATP-binding; 1.15A {Plasmodium falciparum} (A:48-114) Length = 67 Score = 27.4 bits (61), Expect = 2.1 Identities = 15/52 (28%), Positives = 22/52 (42%) Query: 170 EQFFYALDLVKKGVISSHALGATFGEIGQFQFLPVNVVKYAIDADEDGKIDL 221 + F LD KG I+ L + G +++ ID+D GKID Sbjct: 8 KSTFLVLDEDGKGYITKEQLKKGLEKDGLKLPYNFDLLLDQIDSDGSGKIDY 59 >1jfj_A Ehcabp, calcium-binding protein; EF-hand, helix-loop-helix, metal binding protein; NMR {Entamoeba histolytica} (A:67-134) Length = 68 Score = 27.3 bits (61), Expect = 2.1 Identities = 11/52 (21%), Positives = 22/52 (42%), Gaps = 3/52 (5%) Query: 170 EQFFYALDLVKKGVISSHALGATFGEIGQFQFLPVNVVKYAIDADEDGKIDL 221 + + +D+ G ++ + + F + G + V DA+ DG I L Sbjct: 12 KVLYKLMDVDGDGKLTKEEVTSFFKKHGIEK---VAEQVMKADANGDGYITL 60 >3bkh_A Phikz144, lytic transglycosylase; bacteriophage, endolysin, peptidoglycan, cell WALL degradation, lysozyme, hydrolase; 2.50A {Pseudomonas phage phikz} PDB: 3bkv_A* (A:88-268) Length = 181 Score = 27.4 bits (60), Expect = 2.2 Identities = 5/21 (23%), Positives = 9/21 (42%) Query: 123 KEYGVPPGILMALWGLETHFG 143 GV +L+ +E+ F Sbjct: 20 NATGVRSQLLLTFASIESAFD 40 >1ggw_A Protein (CDC4P); light chain, cytokinesis, cell cycle, EF-hand; NMR {Schizosaccharomyces pombe} (A:1-69) Length = 69 Score = 27.3 bits (61), Expect = 2.4 Identities = 11/52 (21%), Positives = 19/52 (36%), Gaps = 3/52 (5%) Query: 170 EQFFYALDLVKKGVISSHALGATFGEIGQFQFLPVNVVKYAIDADEDGKIDL 221 +Q F D G I ++G GQ P I++ ++D+ Sbjct: 8 KQAFSLFDRHGTGRIPKTSIGDLLRACGQN---PTLAEITEIESTLPAEVDM 56 >2k7c_A CABP1, calbrain, calcium-binding protein 1; EF-hand, calmodulin, neuron, alternative splicing, cell membrane, cytoplasm, cytoskeleton, lipoprotein; NMR {Homo sapiens} PDB: 2k7d_A (A:) Length = 72 Score = 27.5 bits (61), Expect = 2.4 Identities = 11/55 (20%), Positives = 20/55 (36%), Gaps = 4/55 (7%) Query: 170 EQFFYALDLVKKGVISSHALGATFGEIGQFQFLPVNVVKYAI---DADEDGKIDL 221 F D G IS+ L ++ + ++ I D + DG++D Sbjct: 10 RDAFREFDTNGDGEISTSELREAMRKLL-GHQVGHRDIEEIIRDVDLNGDGRVDF 63 >2qac_A Myosin A tail domain interacting protein MTIP; malaria invasion, structural genomics, PSI, protein structure initiative; 1.70A {Plasmodium falciparum 3D7} PDB: 2auc_A (A:80-146) Length = 67 Score = 27.0 bits (60), Expect = 2.8 Identities = 8/50 (16%), Positives = 13/50 (26%), Gaps = 3/50 (6%) Query: 173 FYALDLVKKGVISSHALGATFGEIGQFQFLPVNVVKYAI-DADEDGKIDL 221 F D G ++ + G L A+ + ID Sbjct: 11 FAHFDNNCTGYLTKSQMKNILTTWGDA--LTDQEAIDALNAFSSEDNIDY 58 >1cb1_A Calbindin D9K; calcium-binding protein; NMR {Sus scrofa} (A:) Length = 78 Score = 27.0 bits (60), Expect = 2.8 Identities = 6/57 (10%), Positives = 13/57 (22%), Gaps = 5/57 (8%) Query: 170 EQFFYALDLVK--KGVISSHALGATFGEIGQFQFLPVNVVKYAI---DADEDGKIDL 221 + F + +S L + D + DG++ Sbjct: 10 KSIFEKYAAKEGDPNQLSKEELKQLIQAEFPSLLKGPRTLDDLFQELDKNGDGEVSF 66 >1qx2_A Vitamin D-dependent calcium-binding protein, intestinal; EF-hand (helix-loop-helix) calcium binding protein, four- helix domain, protein engineering; HET: FME; 1.44A {Bos taurus} (A:) Length = 76 Score = 27.0 bits (60), Expect = 2.8 Identities = 9/52 (17%), Positives = 17/52 (32%), Gaps = 3/52 (5%) Query: 173 FYALDLVKKGVISSHALGATFGEIGQFQFLPVNVVKYAI---DADEDGKIDL 221 +A IS L +G ++ + I D + DG++ Sbjct: 13 VFAAKEGDPNQISKEELKLVMQTLGPSLLKGMSTLDEMIEEVDKNGDGEVSF 64 >1yx7_A Calsensin, LAN3-6 antigen; calcium-binding protein EF-hand, helix-loop- helix, nervous system, metal binding protein; NMR {Haemopis marmorata} PDB: 1yx8_A (A:) Length = 83 Score = 27.1 bits (60), Expect = 2.8 Identities = 14/59 (23%), Positives = 22/59 (37%), Gaps = 7/59 (11%) Query: 170 EQFFYALDLVKKGVISSHALGATFGEIGQFQFLPVNVVKY-------AIDADEDGKIDL 221 E F LD G +++ L + ++ L + VK D + DGKI Sbjct: 10 EAAFKKLDANGDGYVTALELQTFMVTLDAYKALSKDKVKEASAKLIKMADKNSDGKISK 68 >2be4_A Hypothetical protein LOC449832; DR.36843, BC083168, calicium binding, EF-hand superfamily, structural genomics, protein structure initiative, PSI; 2.10A {Danio rerio} PDB: 2q4u_A (A:1-100) Length = 100 Score = 26.9 bits (59), Expect = 3.5 Identities = 13/87 (14%), Positives = 22/87 (25%), Gaps = 17/87 (19%) Query: 170 EQFFYALDLVKKGVISSHALGATFGEIGQFQFLPVNV-----------VKYAIDADEDGK 218 Q + D G I L F + + A DA DG+ Sbjct: 14 LQIWQHFDADDNGYIEGKELDDFFRHXLKKLQPKDKITDERVQQIKKSFXSAYDATFDGR 73 Query: 219 IDL------VKSNIDAIASAAKFLAKL 239 + + + + + A L Sbjct: 74 LQIEELANXILPQEENFLLIFRREAPL 100 >2it2_A UPF0130 protein PH1069; hypothetical protein, NPPSFA, national project on protein structural and functional analyses; 1.50A {Pyrococcus horikoshii} PDB: 2drv_A 2it3_A (A:57-103,A:151-200) Length = 97 Score = 26.6 bits (59), Expect = 4.4 Identities = 12/81 (14%), Positives = 27/81 (33%), Gaps = 16/81 (19%) Query: 43 GEWKSAARARAVREGMSPKTAKHLFADLEYLDTTIARDRKMVTSPPVSFKDYLDGLSSSE 102 G+W V E + + L+ +E D + + ++ +YL+ Sbjct: 20 GKWHREVSLYEVLEAIKKHRSGQLWFLVERXDVLLGENGEIFVGE-----EYLN------ 68 Query: 103 IIAQGIALKKANSRLLINLKK 123 ++ AN + +K Sbjct: 69 -----KIVEIANDQXRRFKEK 84 >1jfj_A Ehcabp, calcium-binding protein; EF-hand, helix-loop-helix, metal binding protein; NMR {Entamoeba histolytica} (A:1-66) Length = 66 Score = 26.2 bits (58), Expect = 4.7 Identities = 12/55 (21%), Positives = 22/55 (40%), Gaps = 5/55 (9%) Query: 170 EQFFYALDLVKKGVISSHALGATFGEIGQFQFLPVNVVKYAI---DADEDGKIDL 221 E F +D+ G +S + A + +++ DAD +G+ID Sbjct: 3 EALFKEIDVNGDGAVSYEEVKAFVSKKRAI--KNEQLLQLIFKSIDADGNGEIDQ 55 >1top_A Troponin C; contractIle system protein; 1.78A {Gallus gallus} (A:15-75) Length = 61 Score = 26.2 bits (58), Expect = 4.7 Identities = 15/54 (27%), Positives = 19/54 (35%), Gaps = 5/54 (9%) Query: 170 EQFFYALDLVKKGVISSHALGATFGEIGQFQFLPVNVVKYAI---DADEDGKID 220 + F D G IS+ LG +GQ + I D D G ID Sbjct: 9 KAAFDMFDADGGGDISTKELGTVMRMLGQN--PTKEELDAIIEEVDEDGSGTID 60 >2ehb_A Calcineurin B-like protein 4; protein complex, Ca(II) IONS bound to SOS3 (EF-hands 1 and 4), SOS2 FISL motif; 2.10A {Arabidopsis thaliana} PDB: 1v1g_A 1v1f_A (A:1-104) Length = 104 Score = 26.4 bits (58), Expect = 4.8 Identities = 8/50 (16%), Positives = 16/50 (32%), Gaps = 2/50 (4%) Query: 173 FYALD--LVKKGVISSHALGATFGEIGQFQFLPVNVVKYAIDADEDGKID 220 F L ++ G+I + L + + D +G I+ Sbjct: 43 FKKLSSSIIDDGLIHKEEFQLALFRNRNRRNLFADRIFDVFDVKRNGVIE 92 >2be4_A Hypothetical protein LOC449832; DR.36843, BC083168, calicium binding, EF-hand superfamily, structural genomics, protein structure initiative, PSI; 2.10A {Danio rerio} PDB: 2q4u_A (A:101-177) Length = 77 Score = 26.2 bits (58), Expect = 5.6 Identities = 10/58 (17%), Positives = 19/58 (32%), Gaps = 9/58 (15%) Query: 173 FYALDLVKKGVISSHALGATFGEIGQFQFLP---------VNVVKYAIDADEDGKIDL 221 + D G IS+ L ++ + D ++DG++DL Sbjct: 10 WRKYDADSSGYISAAELKNFLKDLFLQHKKKIPPNKLDEYTDAXXKIFDKNKDGRLDL 67 >2zyc_A Peptidoglycan hydrolase FLGJ; 1.74A {Sphingomonas SP} (A:1-38,A:91-170) Length = 118 Score = 25.9 bits (57), Expect = 5.7 Identities = 9/21 (42%), Positives = 12/21 (57%) Query: 123 KEYGVPPGILMALWGLETHFG 143 + GVP L+A LET +G Sbjct: 18 QSLGVPAHFLVAQAALETGWG 38 >2ct9_A Calcium-binding protein P22; EF-hand, metal binding protein; 2.20A {Rattus norvegicus} PDB: 2e30_A (A:100-184) Length = 85 Score = 26.0 bits (57), Expect = 5.7 Identities = 12/58 (20%), Positives = 15/58 (25%), Gaps = 6/58 (10%) Query: 170 EQFFYALDLVKKGVISSHALGATFGEIGQFQF---LPVNVVKYAI---DADEDGKIDL 221 F DL K IS L + ++ I D D D I Sbjct: 17 HFAFRLYDLDKDDKISRDELLQVLRMMVGVNISDEQLGSIADRTIQEADQDGDSAISF 74 >3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain and 4 calmodulin...; transferase, calcium dependent protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum} PDB: 3hzt_A* 3dxn_A 3l19_A* (A:342-417) Length = 76 Score = 25.9 bits (57), Expect = 6.1 Identities = 11/61 (18%), Positives = 20/61 (32%), Gaps = 9/61 (14%) Query: 170 EQFFYALDLVKKGVISSHALGATFGEIGQFQFLP---------VNVVKYAIDADEDGKID 220 F +D G + L + ++ + V+ + A D D +G ID Sbjct: 8 TDIFRHIDKNGDGQLDRQELIDGYSKLSGEEVAVFDLPQIESEVDAILGAADFDRNGYID 67 Query: 221 L 221 Sbjct: 68 Y 68 >2mys_B Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus gallus} (B:93-166) Length = 74 Score = 25.9 bits (57), Expect = 6.1 Identities = 12/55 (21%), Positives = 14/55 (25%), Gaps = 5/55 (9%) Query: 170 EQFFYALDLVKKGVISSHALGATFGEIGQFQFLPVNVVKYAI---DADEDGKIDL 221 F LD KG I L G +K D G +D Sbjct: 6 MGAFKVLDPDGKGSIKKSFLEELLTTGGGR--FTPEEIKNMWAAFPPDVAGNVDY 58 >1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like domain, actin binding protein, contractIle protein; 20.00A {Gallus gallus} (A:718-782) Length = 65 Score = 25.8 bits (57), Expect = 7.2 Identities = 8/54 (14%), Positives = 15/54 (27%), Gaps = 5/54 (9%) Query: 170 EQFFYALDLVKKGVISSHALGATFGEIGQFQFLPVNVVKYAI---DADEDGKID 220 F D K G++ A +G + + D + G + Sbjct: 11 RASFNHFDRKKTGMMDCEDFRACLISMGYN--MGEAEFARIMSIVDPNRMGVVT 62 >3igo_A Calmodulin-domain protein kinase 1; parasite, calcium, CDPK, structural genomics, structural genomics consortium, SGC; HET: ANP SRT; 2.25A {Cryptosporidium parvum iowa II} (A:412-486) Length = 75 Score = 25.9 bits (57), Expect = 7.2 Identities = 13/55 (23%), Positives = 24/55 (43%), Gaps = 5/55 (9%) Query: 170 EQFFYALDLVKKGVISSHALGATFGEIGQFQFLPVNVVKYAI---DADEDGKIDL 221 E+ F D G IS+ L F + + + ++ I D ++DG++D Sbjct: 9 ERAFKMFDKDGSGKISTKELFKLFSQADSS--IQMEELESIIEQVDNNKDGEVDF 61 >1m45_A MLC1P, myosin light chain; protein-peptide complex, myosin light chain, cell cycle protein; 1.65A {Saccharomyces cerevisiae} (A:85-148) Length = 64 Score = 25.8 bits (57), Expect = 7.5 Identities = 12/55 (21%), Positives = 20/55 (36%), Gaps = 5/55 (9%) Query: 170 EQFFYALDLVKKGVISSHALGATFGEIGQFQFLPVNVVKYAI---DADEDGKIDL 221 + F D G +S L +G+ L V + + D +G+ID Sbjct: 2 VKAFQVFDKESTGKVSVGDLRYMLTGLGEK--LTDAEVDELLKGVEVDSNGEIDY 54 >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} (A:447-618) Length = 172 Score = 25.5 bits (55), Expect = 7.6 Identities = 4/20 (20%), Positives = 8/20 (40%) Query: 123 KEYGVPPGILMALWGLETHF 142 +P MA+ E+ + Sbjct: 16 SGKEIPQSYAMAIARQESAW 35 >3evu_A Myosin light chain kinase, green fluorescent protein, calmodulin chimera; gcamp2,calcium sensor, GFP, calmodulin,M13, signaling protein; HET: CRO; 1.75A {Aequorea victoria} PDB: 3ek4_A* 3ek7_A* 3evv_A* 3ek8_A* 3ekh_A* 3ekj_A* 3evr_A* (A:297-376) Length = 80 Score = 25.5 bits (56), Expect = 7.9 Identities = 15/55 (27%), Positives = 23/55 (41%), Gaps = 5/55 (9%) Query: 170 EQFFYALDLVKKGVISSHALGATFGEIGQFQFLPVNVVKYAI---DADEDGKIDL 221 ++ F D G I++ LG +GQ ++ I DAD +G ID Sbjct: 18 KEAFSLFDKDGDGTITTKELGTVMRSLGQN--PTEAELQDMINEVDADGNGTIDF 70 >3fs7_A Parvalbumin, thymic; calcium-binding protein, EF-hand, acetylation, calcium, metal binding protein; 1.95A {Gallus gallus} (A:38-109) Length = 72 Score = 25.5 bits (56), Expect = 8.0 Identities = 15/56 (26%), Positives = 19/56 (33%), Gaps = 4/56 (7%) Query: 170 EQFFYALDLVKKGVISSHALGATFGEIGQFQF-LPVNVVKYAI---DADEDGKIDL 221 ++ F LD K G I L L K + D D DGKI + Sbjct: 8 KKVFGILDQDKSGFIEEEELQLFLKNFSSSARVLTSAETKAFLAAGDTDGDGKIGV 63 >3li6_A Calcium-binding protein; calcium signaling protein, assembled-domain, free energy, dynamic behaviour, cytoskeleton; 2.50A {Entamoeba histolytica} (A:) Length = 66 Score = 25.4 bits (56), Expect = 8.0 Identities = 12/55 (21%), Positives = 22/55 (40%), Gaps = 5/55 (9%) Query: 170 EQFFYALDLVKKGVISSHALGATFGEIGQFQFLPVNVVKYAI---DADEDGKIDL 221 E F +D+ G +S + A + +++ DAD +G+ID Sbjct: 3 EALFKEIDVNGDGAVSYEEVKAFVSKKRAI--KNEQLLQLIFKSIDADGNGEIDQ 55 >3fwb_A Cell division control protein 31; gene gating, complex, calcium, cell cycle, cell division, mitosis, mRNA transport, nuclear pore complex, nucleus; 2.50A {Saccharomyces cerevisiae} PDB: 2gv5_A 2doq_A 3fwc_A (A:93-161) Length = 69 Score = 25.5 bits (56), Expect = 8.1 Identities = 15/55 (27%), Positives = 23/55 (41%), Gaps = 5/55 (9%) Query: 170 EQFFYALDLVKKGVISSHALGATFGEIGQFQFLPVNVVKYAI---DADEDGKIDL 221 ++ F D G IS L E+G+ L ++ I D D DG+I+ Sbjct: 7 KRAFQLFDDDHTGKISIKNLRRVAKELGET--LTDEELRAMIEEFDLDGDGEINE 59 >1dtl_A Cardiac troponin C; helix-turn-helix; HET: BEP; 2.15A {Gallus gallus} (A:90-161) Length = 72 Score = 25.5 bits (56), Expect = 8.6 Identities = 11/55 (20%), Positives = 19/55 (34%), Gaps = 5/55 (9%) Query: 170 EQFFYALDLVKKGVISSHALGATFGEIGQFQFLPVNVVKYAI---DADEDGKIDL 221 F D G I L G+ + + ++ + D + DG+ID Sbjct: 9 SDLFRMFDKNADGYIDLEELKIMLQATGET--ITEDDIEELMKDGDKNNDGRIDY 61 >2ehb_A Calcineurin B-like protein 4; protein complex, Ca(II) IONS bound to SOS3 (EF-hands 1 and 4), SOS2 FISL motif; 2.10A {Arabidopsis thaliana} PDB: 1v1g_A 1v1f_A (A:105-207) Length = 103 Score = 25.4 bits (55), Expect = 8.7 Identities = 14/61 (22%), Positives = 19/61 (31%), Gaps = 9/61 (14%) Query: 170 EQFFYALDLVKKGVISSHALGATFGEIGQFQFLP---------VNVVKYAIDADEDGKID 220 + F DL + G I L + L V+ D DGKID Sbjct: 10 KFAFKLYDLRQTGFIEREELKEMVVALLHESELVLSEDMIEVMVDKAFVQADRKNDGKID 69 Query: 221 L 221 + Sbjct: 70 I 70 >1gbs_A Australian black SWAN egg white lysozyme; hydrolase (O-glycosyl); 1.50A {Cygnus atratus} (A:) Length = 185 Score = 25.2 bits (54), Expect = 9.3 Identities = 4/20 (20%), Positives = 10/20 (50%) Query: 123 KEYGVPPGILMALWGLETHF 142 ++ V P ++ + E+H Sbjct: 57 EKLCVEPAVIAGIISRESHA 76 >2jnf_A Troponin C; stretch activated muscle contraction, EF-hand, metal binding protein; NMR {Lethocerus indicus} PDB: 2k2a_A (A:95-158) Length = 64 Score = 25.4 bits (56), Expect = 9.7 Identities = 13/52 (25%), Positives = 19/52 (36%), Gaps = 5/52 (9%) Query: 173 FYALDLVKKGVISSHALGATFGEIGQFQFLPVNVVKYAI---DADEDGKIDL 221 F D G IS+ + E+ + L + I DAD G +D Sbjct: 3 FRLYDKEGNGYISTDVMREILAELDET--LSSEDLDAMIDEIDADGSGTVDF 52 Database: mmdb70 Posted date: Jun 20, 2010 3:12 AM Number of letters in database: 4,956,049 Number of sequences in database: 33,805 Lambda K H 0.321 0.135 0.399 Gapped Lambda K H 0.267 0.0629 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 33805 Number of Hits to DB: 2,150,490 Number of extensions: 91840 Number of successful extensions: 338 Number of sequences better than 10.0: 1 Number of HSP's gapped: 331 Number of HSP's successfully gapped: 62 Length of query: 288 Length of database: 4,956,049 Length adjustment: 88 Effective length of query: 200 Effective length of database: 1,981,209 Effective search space: 396241800 Effective search space used: 396241800 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 54 (24.8 bits)