BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254780308|ref|YP_003064721.1| putative membrane-bound lytic murein transglycosylase signal peptide protein [Candidatus Liberibacter asiaticus str. psy62] (288 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254780308|ref|YP_003064721.1| putative membrane-bound lytic murein transglycosylase signal peptide protein [Candidatus Liberibacter asiaticus str. psy62] Length = 288 Score = 595 bits (1533), Expect = e-172, Method: Compositional matrix adjust. Identities = 288/288 (100%), Positives = 288/288 (100%) Query: 1 MSFKKYLLISLLMMVYPMLAQAVTQPKKATTQFICSDTADRFGEWKSAARARAVREGMSP 60 MSFKKYLLISLLMMVYPMLAQAVTQPKKATTQFICSDTADRFGEWKSAARARAVREGMSP Sbjct: 1 MSFKKYLLISLLMMVYPMLAQAVTQPKKATTQFICSDTADRFGEWKSAARARAVREGMSP 60 Query: 61 KTAKHLFADLEYLDTTIARDRKMVTSPPVSFKDYLDGLSSSEIIAQGIALKKANSRLLIN 120 KTAKHLFADLEYLDTTIARDRKMVTSPPVSFKDYLDGLSSSEIIAQGIALKKANSRLLIN Sbjct: 61 KTAKHLFADLEYLDTTIARDRKMVTSPPVSFKDYLDGLSSSEIIAQGIALKKANSRLLIN 120 Query: 121 LKKEYGVPPGILMALWGLETHFGETMGKTPLLSTLATLAYDCRRAKFFTEQFFYALDLVK 180 LKKEYGVPPGILMALWGLETHFGETMGKTPLLSTLATLAYDCRRAKFFTEQFFYALDLVK Sbjct: 121 LKKEYGVPPGILMALWGLETHFGETMGKTPLLSTLATLAYDCRRAKFFTEQFFYALDLVK 180 Query: 181 KGVISSHALGATFGEIGQFQFLPVNVVKYAIDADEDGKIDLVKSNIDAIASAAKFLAKLG 240 KGVISSHALGATFGEIGQFQFLPVNVVKYAIDADEDGKIDLVKSNIDAIASAAKFLAKLG Sbjct: 181 KGVISSHALGATFGEIGQFQFLPVNVVKYAIDADEDGKIDLVKSNIDAIASAAKFLAKLG 240 Query: 241 WTKCAGYQPGEKNFAILKHWNASLNYNKTIAYIAAHIDGVPIGKGYDT 288 WTKCAGYQPGEKNFAILKHWNASLNYNKTIAYIAAHIDGVPIGKGYDT Sbjct: 241 WTKCAGYQPGEKNFAILKHWNASLNYNKTIAYIAAHIDGVPIGKGYDT 288 >gi|254780576|ref|YP_003064989.1| ABC transporter related protein [Candidatus Liberibacter asiaticus str. psy62] Length = 597 Score = 24.6 bits (52), Expect = 1.8, Method: Compositional matrix adjust. Identities = 14/52 (26%), Positives = 26/52 (50%) Query: 168 FTEQFFYALDLVKKGVISSHALGATFGEIGQFQFLPVNVVKYAIDADEDGKI 219 F + +++ +V +ISSHA+ +G F F+ + + AI + G I Sbjct: 266 FGQGLIFSIGMVITMIISSHAVYIGEQTVGDFVFINTLLTQLAIPLNILGTI 317 >gi|254780670|ref|YP_003065083.1| phosphopyruvate hydratase [Candidatus Liberibacter asiaticus str. psy62] Length = 424 Score = 24.3 bits (51), Expect = 2.3, Method: Compositional matrix adjust. Identities = 23/68 (33%), Positives = 34/68 (50%), Gaps = 3/68 (4%) Query: 216 DGKIDLVKSNID-AIASAAKFLAKLGWTKCAGYQPGEKNFAILKHWNASLNYNKTIAYIA 274 D +DL+ ++I+ A +A K L L CA +K ILK N L N+ +Y+A Sbjct: 214 DSALDLIANSIEKAGYNAGKDL--LIALDCAASAFFKKEKYILKGENLELQPNEMASYLA 271 Query: 275 AHIDGVPI 282 +D PI Sbjct: 272 NLVDQYPI 279 >gi|254780596|ref|YP_003065009.1| ABC transporter nucleotide binding/ATPase protein [Candidatus Liberibacter asiaticus str. psy62] Length = 438 Score = 24.3 bits (51), Expect = 2.8, Method: Compositional matrix adjust. Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 5/56 (8%) Query: 104 IAQGIALKKANSRLLINLKKEYGVPPGILMALWGLETHFGETMGKTPLLSTLATLA 159 I Q +LKK + LL+ K + V G ++ L G GK+ LL +A L Sbjct: 17 ICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGS-----GKSTLLRIIAGLV 67 >gi|254781216|ref|YP_003065629.1| hypothetical protein CLIBASIA_05615 [Candidatus Liberibacter asiaticus str. psy62] Length = 38 Score = 23.9 bits (50), Expect = 3.6, Method: Composition-based stats. Identities = 8/20 (40%), Positives = 10/20 (50%) Query: 120 NLKKEYGVPPGILMALWGLE 139 N K G PP I + W +E Sbjct: 8 NFKGYIGTPPTIFIKFWNIE 27 >gi|254781047|ref|YP_003065460.1| AFG1-family ATPase [Candidatus Liberibacter asiaticus str. psy62] Length = 404 Score = 23.1 bits (48), Expect = 5.1, Method: Compositional matrix adjust. Identities = 11/27 (40%), Positives = 15/27 (55%) Query: 112 KANSRLLINLKKEYGVPPGILMALWGL 138 K+ RLL++L K+ GI LW L Sbjct: 30 KSFDRLLVDLYKQQKQEQGIFSWLWNL 56 >gi|254780922|ref|YP_003065335.1| glucose-1-phosphate thymidylyltransferase [Candidatus Liberibacter asiaticus str. psy62] Length = 292 Score = 23.1 bits (48), Expect = 6.2, Method: Compositional matrix adjust. Identities = 11/23 (47%), Positives = 13/23 (56%) Query: 171 QFFYALDLVKKGVISSHALGATF 193 QF Y LV G+ S+ LGA F Sbjct: 74 QFSYIEQLVPAGLAQSYILGAEF 96 >gi|254780142|ref|YP_003064555.1| DNA-directed RNA polymerase subunit beta' [Candidatus Liberibacter asiaticus str. psy62] Length = 1398 Score = 22.7 bits (47), Expect = 6.9, Method: Compositional matrix adjust. Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 2/31 (6%) Query: 85 TSPPVSFKDYLDGLSSSEIIAQ--GIALKKA 113 S V F+D +DG+S E I + GIA +K Sbjct: 1027 VSGTVGFEDLVDGISVIESIGESTGIAKRKV 1057 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.321 0.135 0.399 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 173,670 Number of Sequences: 1233 Number of extensions: 6663 Number of successful extensions: 24 Number of sequences better than 100.0: 12 Number of HSP's better than 100.0 without gapping: 8 Number of HSP's successfully gapped in prelim test: 4 Number of HSP's that attempted gapping in prelim test: 16 Number of HSP's gapped (non-prelim): 12 length of query: 288 length of database: 328,796 effective HSP length: 73 effective length of query: 215 effective length of database: 238,787 effective search space: 51339205 effective search space used: 51339205 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 38 (19.2 bits)