Query         gi|254780309|ref|YP_003064722.1| comF family protein [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 59
No_of_seqs    104 out of 2972
Neff          6.1 
Searched_HMMs 39220
Date          Sun May 29 15:59:43 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780309.hhm -d /home/congqian_1/database/cdd/Cdd.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 PRK11595 gluconate periplasmic  99.7 6.6E-17 1.7E-21  112.8   6.6   53    1-57    175-227 (227)
  2 COG1040 ComFC Predicted amidop  99.5   4E-14   1E-18   97.7   6.4   55    1-58    171-225 (225)
  3 TIGR00201 comF comF family pro  99.4 1.7E-13 4.2E-18   94.4   1.7   54    1-55    153-207 (207)
  4 TIGR01203 HGPRTase hypoxanthin  99.2 1.5E-11 3.9E-16   83.8   5.3   56    2-57     85-141 (183)
  5 COG0634 Hpt Hypoxanthine-guani  99.1 1.2E-10 3.1E-15   78.9   6.7   56    2-57     78-133 (178)
  6 PTZ00271 hypoxanthine-guanine   99.1 1.1E-10 2.9E-15   79.1   6.4   54    2-55    103-156 (211)
  7 PRK09162 hypoxanthine-guanine   99.1 1.9E-10 4.9E-15   77.8   6.3   53    3-55     83-135 (181)
  8 COG0462 PrsA Phosphoribosylpyr  99.1 3.5E-10   9E-15   76.4   6.3   49   10-58    207-255 (314)
  9 PTZ00149 hypoxanthine phosphor  99.0 4.6E-10 1.2E-14   75.8   6.2   53    3-55    123-175 (231)
 10 PRK03675 consensus              99.0 4.1E-10   1E-14   76.1   5.6   47   12-58    196-242 (279)
 11 PRK06827 phosphoribosylpyropho  99.0 5.3E-10 1.4E-14   75.4   6.2   46   13-58    261-306 (381)
 12 PTZ00145 phosphoribosylpyropho  99.0 4.2E-10 1.1E-14   76.0   5.6   48   11-58    333-380 (443)
 13 PRK02812 ribose-phosphate pyro  99.0   4E-10   1E-14   76.1   5.0   48   11-58    224-271 (331)
 14 PRK01506 consensus              99.0   6E-10 1.5E-14   75.2   5.3   47   12-58    212-258 (317)
 15 PRK05259 consensus              99.0 5.9E-10 1.5E-14   75.2   5.1   47   12-58    204-250 (310)
 16 PRK02269 ribose-phosphate pyro  99.0 6.3E-10 1.6E-14   75.1   5.2   47   12-58    212-258 (321)
 17 PRK00553 ribose-phosphate pyro  99.0 5.8E-10 1.5E-14   75.3   5.0   47   12-58    221-267 (340)
 18 PRK02270 consensus              99.0   6E-10 1.5E-14   75.2   5.0   47   12-58    209-255 (327)
 19 PRK01132 consensus              99.0 6.2E-10 1.6E-14   75.1   5.1   46   13-58    199-244 (286)
 20 PRK01999 consensus              99.0 7.2E-10 1.8E-14   74.7   5.3   48   11-58    206-253 (311)
 21 PRK02458 ribose-phosphate pyro  99.0 7.7E-10   2E-14   74.6   5.4   47   12-58    213-259 (323)
 22 PRK03092 ribose-phosphate pyro  99.0 7.8E-10   2E-14   74.5   5.1   48   11-58    195-242 (304)
 23 PRK07199 phosphoribosylpyropho  99.0 9.7E-10 2.5E-14   74.1   5.6   47   12-58    206-252 (301)
 24 PRK04923 ribose-phosphate pyro  99.0 8.1E-10 2.1E-14   74.5   5.2   48   11-58    211-258 (319)
 25 PRK00934 ribose-phosphate pyro  99.0 9.6E-10 2.4E-14   74.1   5.5   46   13-58    200-245 (286)
 26 PRK04117 consensus              99.0   9E-10 2.3E-14   74.2   5.2   48   11-58    205-252 (309)
 27 PRK02039 consensus              99.0   9E-10 2.3E-14   74.2   5.1   48   11-58    208-255 (316)
 28 PRK01259 ribose-phosphate pyro  99.0   9E-10 2.3E-14   74.2   5.1   47   12-58    203-249 (309)
 29 PRK05038 consensus              99.0 9.1E-10 2.3E-14   74.2   4.9   48   11-58    207-254 (315)
 30 PRK04554 consensus              99.0 9.5E-10 2.4E-14   74.1   5.0   48   11-58    209-256 (327)
 31 pfam00156 Pribosyltran Phospho  98.9 4.9E-09 1.2E-13   70.3   6.4   45   10-54     79-123 (123)
 32 PRK02277 orotate phosphoribosy  98.7   2E-08 5.2E-13   66.9   5.5   42   13-54    137-178 (201)
 33 COG0034 PurF Glutamine phospho  98.6 4.5E-08 1.2E-12   65.0   4.6   49   10-58    341-389 (470)
 34 COG0856 Orotate phosphoribosyl  98.6 1.3E-07 3.4E-12   62.5   6.2   50    3-55    130-179 (203)
 35 PRK09246 amidophosphoribosyltr  98.6 6.9E-08 1.8E-12   64.0   4.7   48   11-58    352-399 (503)
 36 PRK08525 amidophosphoribosyltr  98.5 8.8E-08 2.2E-12   63.5   4.5   49   10-58    333-381 (445)
 37 PRK07631 amidophosphoribosyltr  98.5 8.9E-08 2.3E-12   63.5   4.5   48   10-57    341-388 (475)
 38 PRK06781 amidophosphoribosyltr  98.5 9.2E-08 2.4E-12   63.4   4.6   48   11-58    342-389 (471)
 39 PRK07349 amidophosphoribosyltr  98.5 9.7E-08 2.5E-12   63.2   4.4   48   10-57    365-412 (495)
 40 TIGR01090 apt adenine phosphor  98.5 1.7E-07 4.5E-12   61.9   5.7   51    2-53    100-150 (175)
 41 PRK08341 amidophosphoribosyltr  98.5 8.7E-08 2.2E-12   63.5   4.2   49   10-58    327-375 (442)
 42 PRK07272 amidophosphoribosyltr  98.5 1.1E-07 2.7E-12   63.0   4.5   47   11-57    344-390 (484)
 43 PRK05793 amidophosphoribosyltr  98.5 9.9E-08 2.5E-12   63.2   4.4   49   10-58    349-397 (472)
 44 PRK09123 amidophosphoribosyltr  98.5 1.1E-07 2.7E-12   63.0   4.5   48   10-57    344-391 (480)
 45 KOG1448 consensus               98.5 1.3E-07 3.3E-12   62.6   4.9   48   11-58    208-255 (316)
 46 PRK06388 amidophosphoribosyltr  98.5 1.1E-07 2.8E-12   63.0   4.3   48   10-57    349-396 (474)
 47 PRK07847 amidophosphoribosyltr  98.5 1.3E-07 3.3E-12   62.5   4.5   49   10-58    335-383 (489)
 48 PRK05205 bifunctional pyrimidi  98.5 2.5E-07 6.4E-12   61.0   5.7   44   11-54     89-133 (176)
 49 KOG0572 consensus               98.5   2E-07 5.2E-12   61.5   4.4   49   10-58    349-397 (474)
 50 TIGR01134 purF amidophosphorib  98.4 2.2E-07 5.6E-12   61.3   4.4   46   10-55    353-398 (467)
 51 KOG3367 consensus               98.4 4.6E-07 1.2E-11   59.6   4.8   48    7-54    115-162 (216)
 52 PRK07322 adenine phosphoribosy  98.3 9.4E-07 2.4E-11   57.9   5.7   44   11-54    114-157 (178)
 53 COG2236 Predicted phosphoribos  98.3 5.3E-07 1.3E-11   59.3   2.9   47    7-53     76-123 (192)
 54 PRK02304 adenine phosphoribosy  98.2 2.6E-06 6.5E-11   55.6   5.4   40   15-54    111-150 (174)
 55 PRK13811 orotate phosphoribosy  98.2 2.8E-06 7.1E-11   55.4   5.4   41   14-54    101-141 (170)
 56 PRK00455 pyrE orotate phosphor  98.2 2.6E-06 6.6E-11   55.5   4.8   41   15-55    109-149 (200)
 57 COG0461 PyrE Orotate phosphori  98.2 4.5E-06 1.1E-10   54.2   5.8   40   15-54    110-149 (201)
 58 TIGR01367 pyrE_Therm orotate p  98.2 3.6E-06 9.1E-11   54.8   5.2   51    3-54     98-148 (205)
 59 PRK13812 orotate phosphoribosy  98.2 3.8E-06 9.7E-11   54.6   5.3   39   16-54    106-144 (174)
 60 TIGR01091 upp uracil phosphori  98.1 5.3E-06 1.3E-10   53.9   5.6   50    8-57    119-168 (213)
 61 PRK13809 orotate phosphoribosy  98.1 5.5E-06 1.4E-10   53.8   5.5   40   15-54    116-155 (206)
 62 PRK13810 orotate phosphoribosy  98.1 5.1E-06 1.3E-10   54.0   5.3   40   15-54    120-159 (187)
 63 PRK12560 adenine phosphoribosy  98.1 7.1E-06 1.8E-10   53.2   5.6   39   16-54    110-148 (184)
 64 PRK05500 bifunctional orotidin  98.1   8E-06   2E-10   52.9   5.7   40   15-54    391-430 (478)
 65 TIGR00336 pyrE orotate phospho  98.1 7.5E-06 1.9E-10   53.0   5.3   41   14-54    114-154 (187)
 66 COG0503 Apt Adenine/guanine ph  98.0 1.3E-05 3.3E-10   51.8   6.2   41   16-56    115-155 (179)
 67 PRK06031 phosphoribosyltransfe  98.0 1.5E-05 3.7E-10   51.5   5.6   49    5-53    142-190 (233)
 68 COG1926 Predicted phosphoribos  98.0 1.2E-05 3.2E-10   51.9   5.0   42   12-53    119-160 (220)
 69 PRK00129 upp uracil phosphorib  97.9 2.4E-05 6.1E-10   50.3   5.3   48    9-56    115-162 (208)
 70 TIGR01251 ribP_PPkin ribose-ph  97.8 4.4E-05 1.1E-09   48.9   4.9   49   10-58    205-253 (316)
 71 COG0035 Upp Uracil phosphoribo  97.7 6.1E-05 1.6E-09   48.1   5.4   48   10-57    117-165 (210)
 72 KOG1712 consensus               97.6 9.5E-05 2.4E-09   47.1   5.2   39   16-54    121-159 (183)
 73 PRK08558 adenine phosphoribosy  97.5 0.00018 4.7E-09   45.6   5.0   40   16-55    175-214 (238)
 74 PRK09177 xanthine-guanine phos  97.5 8.9E-05 2.3E-09   47.2   3.3   35   14-53     81-115 (156)
 75 COG2065 PyrR Pyrimidine operon  97.5 0.00024 6.1E-09   44.9   5.3   44   11-54     90-134 (179)
 76 PRK09219 xanthine phosphoribos  97.4 0.00032 8.1E-09   44.2   5.0   39   16-54    116-154 (189)
 77 KOG1503 consensus               96.6  0.0033 8.4E-08   38.8   4.4   46   13-58    243-288 (354)
 78 PRK09213 purine operon repress  95.0   0.059 1.5E-06   32.0   5.3   43   15-57    194-236 (274)
 79 KOG1017 consensus               94.4    0.11 2.8E-06   30.5   5.4   47    7-53    179-227 (267)
 80 TIGR01743 purR_Bsub pur operon  93.8   0.095 2.4E-06   30.9   4.2   42   16-57    194-235 (269)
 81 TIGR01744 XPRTase xanthine pho  90.5    0.48 1.2E-05   27.1   4.4   45    6-52    108-152 (191)
 82 pfam01488 Shikimate_DH Shikima  80.5     3.7 9.4E-05   22.3   4.7   41    8-52      3-43  (134)
 83 cd01065 NAD_bind_Shikimate_DH   72.8     8.6 0.00022   20.3   4.8   36   13-52     15-50  (155)
 84 PRK13940 glutamyl-tRNA reducta  64.1     7.6 0.00019   20.6   3.1   40    8-51    172-211 (414)
 85 PRK00045 hemA glutamyl-tRNA re  62.9     8.3 0.00021   20.4   3.1   40    9-52    174-213 (429)
 86 cd05213 NAD_bind_Glutamyl_tRNA  60.8     9.8 0.00025   20.0   3.2   40    9-52    170-209 (311)
 87 cd01525 RHOD_Kc Member of the   57.5      19 0.00049   18.4   4.3   35   14-51     62-96  (105)
 88 COG2072 TrkA Predicted flavopr  56.3      20 0.00052   18.3   4.4   36   12-52    170-205 (443)
 89 cd01444 GlpE_ST GlpE sulfurtra  53.9      22 0.00057   18.1   4.2   33   16-51     55-87  (96)
 90 cd01528 RHOD_2 Member of the R  51.3      25 0.00063   17.8   4.3   33   16-51     57-89  (101)
 91 COG4825 Uncharacterized membra  50.1      26 0.00066   17.7   4.0   45    9-53    172-216 (395)
 92 cd00158 RHOD Rhodanese Homolog  45.2      27 0.00068   17.7   3.3   34   15-51     48-81  (89)
 93 cd01674 Homoaconitase_Swivel H  44.0      21 0.00055   18.2   2.7   48    8-55     36-83  (129)
 94 PRK00439 leuD 3-isopropylmalat  43.2      25 0.00063   17.8   2.9   49    8-56     39-87  (163)
 95 pfam00694 Aconitase_C Aconitas  43.0      25 0.00065   17.8   2.9   39   17-55     73-112 (131)
 96 PRK00886 2-phosphosulfolactate  42.6      34 0.00087   17.1   4.8   43    5-52      6-48  (240)
 97 KOG4203 consensus               41.8      26 0.00065   17.7   2.8   35   11-46    381-415 (473)
 98 PRK10693 response regulator of  40.7      34 0.00087   17.1   3.3   31   14-47      4-34  (337)
 99 smart00450 RHOD Rhodanese Homo  38.1      40   0.001   16.7   4.0   34   15-51     54-87  (100)
100 cd00227 CPT Chloramphenicol (C  37.2      36 0.00092   16.9   3.0   34   18-51     85-118 (175)
101 cd01534 4RHOD_Repeat_3 Member   37.0      42  0.0011   16.6   4.8   33   15-51     54-86  (95)
102 PRK09620 hypothetical protein;  35.4      45  0.0011   16.4   4.5   37   15-51      1-50  (229)
103 TIGR01035 hemA glutamyl-tRNA r  34.5      47  0.0012   16.3   3.6   40    8-51    174-215 (436)
104 cd01529 4RHOD_Repeats Member o  34.3      47  0.0012   16.3   4.2   33   16-51     55-87  (96)
105 cd01518 RHOD_YceA Member of th  34.2      47  0.0012   16.3   5.1   34   15-51     59-92  (101)
106 PRK01641 leuD isopropylmalate   33.2      49  0.0012   16.2   3.1   42   13-54     63-104 (201)
107 cd01447 Polysulfide_ST Polysul  33.0      49  0.0013   16.2   4.1   33   16-51     60-92  (103)
108 TIGR01139 cysK cysteine syntha  33.0      49  0.0012   16.2   3.1   28   26-53    174-203 (312)
109 PRK06921 hypothetical protein;  32.8      16 0.00041   18.9   0.6   33   10-42    169-209 (265)
110 TIGR01136 cysKM cysteine synth  31.6      48  0.0012   16.3   2.9   28   27-54    176-205 (315)
111 PRK11749 putative oxidoreducta  30.4      55  0.0014   16.0   4.4   35   14-52    273-307 (460)
112 pfam07931 CPT Chloramphenicol   30.0      56  0.0014   15.9   3.0   33   18-50     83-116 (174)
113 cd00404 Aconitase_swivel Aconi  29.8      48  0.0012   16.3   2.6   41   15-55     13-53  (88)
114 pfam03192 DUF257 Pyrococcus pr  29.0      50  0.0013   16.2   2.6   24   19-45     40-63  (210)
115 TIGR02668 moaA_archaeal probab  28.7      56  0.0014   15.9   2.8   25   26-50     96-120 (324)
116 cd01532 4RHOD_Repeat_1 Member   28.3      60  0.0015   15.7   3.8   35   16-51     49-83  (92)
117 cd01644 RT_pepA17 RT_pepA17: R  27.9      32 0.00081   17.2   1.4   24   19-42    137-160 (213)
118 TIGR01809 Shik-DH-AROM shikima  27.5      62  0.0016   15.7   3.2   27   26-52    135-161 (291)
119 PRK00162 glpE thiosulfate sulf  27.4      62  0.0016   15.7   4.4   33   16-51     57-89  (104)
120 cd01527 RHOD_YgaP Member of th  26.4      65  0.0017   15.6   4.5   34   15-51     52-85  (99)
121 PRK06975 bifunctional uroporph  25.1      69  0.0018   15.4   5.4   44   12-59    134-177 (653)
122 PRK12422 chromosomal replicati  24.8      27 0.00069   17.6   0.6   38   10-47    195-238 (455)
123 COG0066 LeuD 3-isopropylmalate  24.8      60  0.0015   15.8   2.3   42   14-55     59-100 (191)
124 cd01579 AcnA_Bact_Swivel Bacte  24.6      51  0.0013   16.1   2.0   40   16-55     47-86  (121)
125 COG0373 HemA Glutamyl-tRNA red  24.6      70  0.0018   15.4   3.3   39    9-51    170-208 (414)
126 COG1204 Superfamily II helicas  23.9      73  0.0019   15.3   3.9   43   16-59    145-192 (766)
127 PRK00258 aroE shikimate 5-dehy  23.0      76  0.0019   15.2   4.8   35   14-52    119-153 (275)
128 cd01524 RHOD_Pyr_redox Member   22.7      77   0.002   15.2   4.2   32   16-51     50-81  (90)
129 TIGR02281 DTGA conserved hypot  22.5      46  0.0012   16.4   1.4   32    2-40      9-40  (121)
130 cd01577 IPMI_Swivel Aconatase-  22.0      62  0.0016   15.7   2.0   38   18-55     18-55  (91)
131 TIGR01137 cysta_beta cystathio  21.8      69  0.0018   15.4   2.2   25   26-50    186-210 (527)
132 TIGR01342 acon_putative aconit  21.8      31  0.0008   17.3   0.4   49    7-55    463-512 (658)
133 PRK00149 dnaA chromosomal repl  21.6      30 0.00077   17.3   0.3   39   10-48    201-245 (447)
134 COG0169 AroE Shikimate 5-dehyd  20.5      86  0.0022   14.9   5.1   35   14-52    123-157 (283)

No 1  
>PRK11595 gluconate periplasmic binding protein; Provisional
Probab=99.68  E-value=6.6e-17  Score=112.78  Aligned_cols=53  Identities=38%  Similarity=0.564  Sum_probs=49.7

Q ss_pred             CCCEEEECCHHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEEEEEC
Q ss_conf             976088251021002897599992004573889999999997899789999998306
Q gi|254780309|r    1 MRNAFNVPQYVSKHVAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILTFSRSL   57 (59)
Q Consensus         1 l~gaf~i~~~~~~~i~gk~vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~~lar~~   57 (59)
                      ++|+|.+.++    ++|++|+|||||+|||+|+.++++.|+++||++|+++++|||+
T Consensus       175 v~~aF~~~~~----~~g~~vlLVDDV~TTGaTl~~~a~~L~~aGa~~V~v~~laRt~  227 (227)
T PRK11595        175 LKNAFRLELP----VQGQHMVIVDDVVTTGSTVAEIAQLLLRNGAATVQVWCLCRTL  227 (227)
T ss_pred             HHCCEECCCC----CCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEEEEEC
T ss_conf             4288784578----8969799962014639999999999998099879999999679


No 2  
>COG1040 ComFC Predicted amidophosphoribosyltransferases [General function prediction only]
Probab=99.50  E-value=4e-14  Score=97.74  Aligned_cols=55  Identities=44%  Similarity=0.630  Sum_probs=49.8

Q ss_pred             CCCEEEECCHHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEEEEECC
Q ss_conf             9760882510210028975999920045738899999999978997899999983068
Q gi|254780309|r    1 MRNAFNVPQYVSKHVAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILTFSRSLK   58 (59)
Q Consensus         1 l~gaf~i~~~~~~~i~gk~vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~~lar~~~   58 (59)
                      ++|+|.+.++....   |+|+|||||||||+|+.++++.|++.|+++|.++++||+..
T Consensus       171 l~~aF~~~~~~~~~---~~vlLvDDV~TTGaTl~~~~~~L~~~Ga~~v~~~~lar~~~  225 (225)
T COG1040         171 LKGAFRLKKGIEEP---KNVLLVDDVYTTGATLKEAAKLLREAGAKRVFVLTLARAPE  225 (225)
T ss_pred             CCCCEECCCCCCCC---CCEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEEEEECCC
T ss_conf             60563147876767---72899940066679999999999975991699999984589


No 3  
>TIGR00201 comF comF family protein; InterPro: IPR005222   Proteins in this family are found in bacterial species which posses systems for natural transformation with exogenous DNA (eg Bacillus subtilis, Haemophilus influenzae), and also species without these systems (eg Escherichia coli). Competence protein F has been shown to be important for the uptake of exogenous DNA in naturally competent bacteria, though the precise role of this protein is not yet known , . GntX is a periplasmic gluconate binding protein thought to be part of a high-affinity gluconate transport system ..
Probab=99.36  E-value=1.7e-13  Score=94.40  Aligned_cols=54  Identities=43%  Similarity=0.546  Sum_probs=48.6

Q ss_pred             CCCEEEECCHHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHH-CCCCEEEEEEEEE
Q ss_conf             976088251021002897599992004573889999999997-8997899999983
Q gi|254780309|r    1 MRNAFNVPQYVSKHVAGLKILLIDDVYTTGATAKCAAIALKK-AGAMTVSILTFSR   55 (59)
Q Consensus         1 l~gaf~i~~~~~~~i~gk~vliVDDiitTG~T~~~~~~~L~~-~ga~~V~~~~lar   55 (59)
                      ++|+|.+.... ..++||+|+|||||+|||+||.++++.|.+ .||.+|..++|+|
T Consensus       153 l~n~f~l~~~~-~~~~~~~ivL~DD~~TTGatl~~~~~lLl~k~ga~~V~~~~L~r  207 (207)
T TIGR00201       153 LENAFKLKSKK-KEFQGRKIVLVDDVVTTGATLAEIAKLLLKKLGAAKVQVWSLAR  207 (207)
T ss_pred             HHHHHHHHCCC-CCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCHHHHHHCCC
T ss_conf             55666542032-46887558997045101236899999998645700114412069


No 4  
>TIGR01203 HGPRTase hypoxanthine phosphoribosyltransferase; InterPro: IPR005904    Phosphoribosyltransferases (PRT) are enzymes that catalyze the synthesis of beta-n-5'-monophosphates from phosphoribosylpyrophosphate (PRPP) and an enzyme specific amine. A number of PRT's are involved in the biosynthesis of purine, pyrimidine, and pyridine nucleotides, or in the salvage of purines and pyrimidines. Purine nucleotides are synthesized both via the de novo pathway and via the salvage pathway and are vital for cell functions and cell proliferation through DNA and RNA syntheses and ATP energy supply.    This entry presents hypoxanthine phosphoribosyltransferase (2.4.2.8 from EC), which belongs to phosphoribosyltransferase family and is involved in purine salvage.; GO: 0004422 hypoxanthine phosphoribosyltransferase activity, 0006166 purine ribonucleoside salvage, 0005737 cytoplasm.
Probab=99.22  E-value=1.5e-11  Score=83.76  Aligned_cols=56  Identities=18%  Similarity=0.299  Sum_probs=51.6

Q ss_pred             CCEEEECCHHHHCCC-CCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEEEEEC
Q ss_conf             760882510210028-97599992004573889999999997899789999998306
Q gi|254780309|r    2 RNAFNVPQYVSKHVA-GLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILTFSRSL   57 (59)
Q Consensus         2 ~gaf~i~~~~~~~i~-gk~vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~~lar~~   57 (59)
                      .|..++-.+...+++ ||+|||||||++||.||++..+.|+.++|+++.+++|-.-+
T Consensus        85 ~g~vki~kDld~di~~gk~VLiVEDIvDtG~Tl~~~~~~L~~r~Pksl~i~~LL~Kp  141 (183)
T TIGR01203        85 SGDVKILKDLDEDIKRGKDVLIVEDIVDTGLTLSYLLELLKARKPKSLKIVTLLDKP  141 (183)
T ss_pred             ECCEEEEECCCCCCCCCCCEEEEEEHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECC
T ss_conf             111379852789840378189996153424679999998713899368999986558


No 5  
>COG0634 Hpt Hypoxanthine-guanine phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=99.14  E-value=1.2e-10  Score=78.92  Aligned_cols=56  Identities=21%  Similarity=0.345  Sum_probs=51.1

Q ss_pred             CCEEEECCHHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEEEEEC
Q ss_conf             76088251021002897599992004573889999999997899789999998306
Q gi|254780309|r    2 RNAFNVPQYVSKHVAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILTFSRSL   57 (59)
Q Consensus         2 ~gaf~i~~~~~~~i~gk~vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~~lar~~   57 (59)
                      .|.+++..++..+++||+|||||||++||.|++++.+.|+.+||+++.+++|..-.
T Consensus        78 sg~v~i~kDld~di~grdVLiVeDIiDsG~TLs~i~~~l~~r~a~sv~i~tLldK~  133 (178)
T COG0634          78 SGEVKILKDLDEDIKGRDVLIVEDIIDSGLTLSKVRDLLKERGAKSVRIATLLDKP  133 (178)
T ss_pred             CCCEEEECCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEEEEECC
T ss_conf             77168853566677898499985210367559999999975699768999986076


No 6  
>PTZ00271 hypoxanthine-guanine phosphoribosyltransferase; Provisional
Probab=99.13  E-value=1.1e-10  Score=79.10  Aligned_cols=54  Identities=11%  Similarity=0.149  Sum_probs=50.0

Q ss_pred             CCEEEECCHHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEEEE
Q ss_conf             760882510210028975999920045738899999999978997899999983
Q gi|254780309|r    2 RNAFNVPQYVSKHVAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILTFSR   55 (59)
Q Consensus         2 ~gaf~i~~~~~~~i~gk~vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~~lar   55 (59)
                      .|..++..+...+++||+|||||||++||.||.++.+.|+..||++|.+++|.-
T Consensus       103 sG~v~i~~dl~~~i~gk~VLIVEDIvDTG~TL~~l~~~l~~~~p~Svki~tLl~  156 (211)
T PTZ00271        103 SGQVRMLLDVRDSVENRHILIVEDIVDSAITLQYLMRFMLAKKPASLKTVVLLD  156 (211)
T ss_pred             CCEEEEEECCCCCCCCCEEEEEECHHCCCHHHHHHHHHHHHCCCCEEEEEEEEE
T ss_conf             752899445887768987999941321255899999999854998389999784


No 7  
>PRK09162 hypoxanthine-guanine phosphoribosyltransferase; Provisional
Probab=99.10  E-value=1.9e-10  Score=77.85  Aligned_cols=53  Identities=17%  Similarity=0.162  Sum_probs=46.3

Q ss_pred             CEEEECCHHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEEEE
Q ss_conf             60882510210028975999920045738899999999978997899999983
Q gi|254780309|r    3 NAFNVPQYVSKHVAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILTFSR   55 (59)
Q Consensus         3 gaf~i~~~~~~~i~gk~vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~~lar   55 (59)
                      |...+..+...+++||||||||||++||.|+.++.+.|+..||++|.+++|.-
T Consensus        83 g~v~~~~~~~~~i~gk~VLiVeDIvDTG~Tl~~l~~~l~~~gp~Svki~~Lld  135 (181)
T PRK09162         83 GELVWKVKPRESLKGRTVLVVDDILDEGHTLAAIRDWCLEMGAAEVYSAVLVD  135 (181)
T ss_pred             CCEEEEECCCCCCCCCEEEEEEEEECCHHHHHHHHHHHHHCCCCEEEEEEEEE
T ss_conf             84799735775668986999931876279999999999704998899999996


No 8  
>COG0462 PrsA Phosphoribosylpyrophosphate synthetase [Nucleotide transport and metabolism / Amino acid transport and metabolism]
Probab=99.06  E-value=3.5e-10  Score=76.43  Aligned_cols=49  Identities=31%  Similarity=0.378  Sum_probs=43.9

Q ss_pred             HHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEEEEECC
Q ss_conf             0210028975999920045738899999999978997899999983068
Q gi|254780309|r   10 YVSKHVAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILTFSRSLK   58 (59)
Q Consensus        10 ~~~~~i~gk~vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~~lar~~~   58 (59)
                      ....+++||+++|||||++||.|+..+++.|++.||++|++++.+..+.
T Consensus       207 ~~~gdV~gk~~iiVDDiIdTgGTi~~Aa~~Lk~~GAk~V~a~~tH~vfs  255 (314)
T COG0462         207 NLIGDVEGKDVVIVDDIIDTGGTIAKAAKALKERGAKKVYAAATHGVFS  255 (314)
T ss_pred             CCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEEECHHHC
T ss_conf             3433677987999936513656899999999977997599999836607


No 9  
>PTZ00149 hypoxanthine phosphoribosyltransferase; Provisional
Probab=99.04  E-value=4.6e-10  Score=75.80  Aligned_cols=53  Identities=19%  Similarity=0.179  Sum_probs=47.8

Q ss_pred             CEEEECCHHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEEEE
Q ss_conf             60882510210028975999920045738899999999978997899999983
Q gi|254780309|r    3 NAFNVPQYVSKHVAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILTFSR   55 (59)
Q Consensus         3 gaf~i~~~~~~~i~gk~vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~~lar   55 (59)
                      |..++..+...+++||+||||+||++||.||.+..+.|++.+|++|.+++|-.
T Consensus       123 G~v~i~~d~~~~l~gk~VLIVEDIvDTG~Tl~~l~~~l~~~~p~svkv~~LL~  175 (231)
T PTZ00149        123 DRIEIVSEDLSCLKDKHVLIVEDIIDTGKTLLKFCEYLKKFEIKTIAIACLFI  175 (231)
T ss_pred             CCEEEECCCCCCCCCCEEEEEECEECHHHHHHHHHHHHHHCCCCEEEEEEEEE
T ss_conf             73699226633268984999955277178999999999737999689999785


No 10 
>PRK03675 consensus
Probab=99.03  E-value=4.1e-10  Score=76.06  Aligned_cols=47  Identities=30%  Similarity=0.438  Sum_probs=43.0

Q ss_pred             HHCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEEEEECC
Q ss_conf             10028975999920045738899999999978997899999983068
Q gi|254780309|r   12 SKHVAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILTFSRSLK   58 (59)
Q Consensus        12 ~~~i~gk~vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~~lar~~~   58 (59)
                      ..+++||+|+|||||++||.|+..+++.|+++||++|++++.+..++
T Consensus       196 ~~dV~Gk~vIIVDDiIdTGgTl~~aa~~Lk~~GA~~V~~~aTHglfs  242 (279)
T PRK03675        196 DVDVKGKNVLIVDDIISTGGTMIRAAEILRKLGAKKIFVVATHGVFA  242 (279)
T ss_pred             CCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCC
T ss_conf             55547967999745102527899999999976998699999781068


No 11 
>PRK06827 phosphoribosylpyrophosphate synthetase; Provisional
Probab=99.03  E-value=5.3e-10  Score=75.45  Aligned_cols=46  Identities=24%  Similarity=0.343  Sum_probs=42.3

Q ss_pred             HCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEEEEECC
Q ss_conf             0028975999920045738899999999978997899999983068
Q gi|254780309|r   13 KHVAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILTFSRSLK   58 (59)
Q Consensus        13 ~~i~gk~vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~~lar~~~   58 (59)
                      .+++||+++||||+++||.|+..+++.|++.||++|++++-+..++
T Consensus       261 gdV~GK~~IIvDDmIdTggTl~~aA~~Lk~~GA~~V~a~aTHgvfS  306 (381)
T PRK06827        261 RDVEGKDVFIVDDMIASGGSVLDAAKELKSRGAKKIICAVSFPFFT  306 (381)
T ss_pred             CCCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEEEEECHHCC
T ss_conf             5567988999724314526899999999987998899999736604


No 12 
>PTZ00145 phosphoribosylpyrophosphate synthetase; Provisional
Probab=99.03  E-value=4.2e-10  Score=76.03  Aligned_cols=48  Identities=27%  Similarity=0.278  Sum_probs=43.8

Q ss_pred             HHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEEEEECC
Q ss_conf             210028975999920045738899999999978997899999983068
Q gi|254780309|r   11 VSKHVAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILTFSRSLK   58 (59)
Q Consensus        11 ~~~~i~gk~vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~~lar~~~   58 (59)
                      ...+++||+++|||||++||.|+..+++.|++.||++|++++.+..++
T Consensus       333 iIGDVkGK~~IIVDDmIDTgGTL~~AA~~Lke~GAk~VyA~aTHGVfS  380 (443)
T PTZ00145        333 LVGNVYDSDVIIVDDMIDTSGTLCEAAKQLKKHGARRVFAFATHGLFS  380 (443)
T ss_pred             EEECCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEEEEECCCCC
T ss_conf             575027987899677434556799999999967998799999773078


No 13 
>PRK02812 ribose-phosphate pyrophosphokinase; Provisional
Probab=99.01  E-value=4e-10  Score=76.13  Aligned_cols=48  Identities=31%  Similarity=0.334  Sum_probs=43.2

Q ss_pred             HHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEEEEECC
Q ss_conf             210028975999920045738899999999978997899999983068
Q gi|254780309|r   11 VSKHVAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILTFSRSLK   58 (59)
Q Consensus        11 ~~~~i~gk~vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~~lar~~~   58 (59)
                      ...+++||+++|||||++||.|+..+++.|+++||++|++++.+..++
T Consensus       224 ~vGdV~Gr~~IIVDDiIdTGgTl~~aa~~Lk~~GA~~V~a~aTHgvfs  271 (331)
T PRK02812        224 VIGDVKGKTAILVDDMIDTGGTICEGARLLRKEGAKRVYACATHAVFS  271 (331)
T ss_pred             CCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCC
T ss_conf             445545651899621442279999999999857998789999896558


No 14 
>PRK01506 consensus
Probab=98.99  E-value=6e-10  Score=75.16  Aligned_cols=47  Identities=32%  Similarity=0.322  Sum_probs=42.7

Q ss_pred             HHCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEEEEECC
Q ss_conf             10028975999920045738899999999978997899999983068
Q gi|254780309|r   12 SKHVAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILTFSRSLK   58 (59)
Q Consensus        12 ~~~i~gk~vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~~lar~~~   58 (59)
                      ..+++||+|+|||||++||.|+..+++.|+++||++|++++.+..+.
T Consensus       212 ~gdV~Gr~vIIVDDiI~TGgTl~~aa~~Lk~~GA~~V~~~~THglfs  258 (317)
T PRK01506        212 IGNIEGKTAILIDDIIDTAGTITLAANALVENGASEVYACCTHPVLS  258 (317)
T ss_pred             CCCCCCCEEEEECCHHHCCCHHHHHHHHHHHCCCCEEEEEEECCCCC
T ss_conf             56557962787513221350599999999865997589999770068


No 15 
>PRK05259 consensus
Probab=98.99  E-value=5.9e-10  Score=75.22  Aligned_cols=47  Identities=34%  Similarity=0.360  Sum_probs=42.9

Q ss_pred             HHCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEEEEECC
Q ss_conf             10028975999920045738899999999978997899999983068
Q gi|254780309|r   12 SKHVAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILTFSRSLK   58 (59)
Q Consensus        12 ~~~i~gk~vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~~lar~~~   58 (59)
                      ..+++||+|+|||||++||.|+..+++.|+++||++|++++.+..++
T Consensus       204 ~gdV~Gk~~IIvDDiIdTGgTl~~aa~~Lk~~GA~~V~~~~THgvfs  250 (310)
T PRK05259        204 IGDVSGRDCILIDDIVDSGGTLCNAAEALLANGANSVTAYITHGVLS  250 (310)
T ss_pred             CCCCCCCEEEEECCHHHCHHHHHHHHHHHHHCCCCEEEEEEECCCCC
T ss_conf             56623124895173441688999999999877998699999785368


No 16 
>PRK02269 ribose-phosphate pyrophosphokinase; Provisional
Probab=98.99  E-value=6.3e-10  Score=75.07  Aligned_cols=47  Identities=38%  Similarity=0.350  Sum_probs=42.7

Q ss_pred             HHCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEEEEECC
Q ss_conf             10028975999920045738899999999978997899999983068
Q gi|254780309|r   12 SKHVAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILTFSRSLK   58 (59)
Q Consensus        12 ~~~i~gk~vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~~lar~~~   58 (59)
                      ..+++||+|+|||||++||.|+..+++.|++.||++|++++.+..++
T Consensus       212 ~gdV~Gk~vIIVDDiIdTGgTl~~aa~~Lk~~GA~~V~~~~THgvfs  258 (321)
T PRK02269        212 IGNVSGKKCILIDDMIDTAGTICHAADALAEAGATAVYASCTHPVLS  258 (321)
T ss_pred             CCCCCCCEEEEECCHHHCHHHHHHHHHHHHHCCCCEEEEEEECCCCC
T ss_conf             77406976999662431426699999999848998279999780278


No 17 
>PRK00553 ribose-phosphate pyrophosphokinase; Provisional
Probab=98.99  E-value=5.8e-10  Score=75.26  Aligned_cols=47  Identities=30%  Similarity=0.342  Sum_probs=42.9

Q ss_pred             HHCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEEEEECC
Q ss_conf             10028975999920045738899999999978997899999983068
Q gi|254780309|r   12 SKHVAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILTFSRSLK   58 (59)
Q Consensus        12 ~~~i~gk~vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~~lar~~~   58 (59)
                      ..+++||+++|||||++||.|+..+++.|+++||++|++++.+..++
T Consensus       221 iGdV~Gk~vIIVDDiIdTGgTl~~aa~~Lk~~GA~~V~a~aTHgvfs  267 (340)
T PRK00553        221 LGEVKNKNCLIVDDMIDTGGTVIAAAKLLKKQKAKKVCVMATHGLFN  267 (340)
T ss_pred             CCCCCCCEEEEECCHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCC
T ss_conf             55546854895252443125699999999987998799999795148


No 18 
>PRK02270 consensus
Probab=98.98  E-value=6e-10  Score=75.19  Aligned_cols=47  Identities=30%  Similarity=0.368  Sum_probs=42.7

Q ss_pred             HHCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEEEEECC
Q ss_conf             10028975999920045738899999999978997899999983068
Q gi|254780309|r   12 SKHVAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILTFSRSLK   58 (59)
Q Consensus        12 ~~~i~gk~vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~~lar~~~   58 (59)
                      ..+++||+++|||||++||.|+..+++.|+++||++|++++.+..++
T Consensus       209 iGdV~Gk~~IIVDDiIdTGgTl~~aa~~Lk~~GA~~V~~~aTHgvfs  255 (327)
T PRK02270        209 IGDVDGKNAVIIDDIIDTGGTIINAAEVLKEKGAKKIVLAATHGLFS  255 (327)
T ss_pred             CCCEEEEEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEEEECHHCC
T ss_conf             56312014899767000547799999999987998799999774438


No 19 
>PRK01132 consensus
Probab=98.98  E-value=6.2e-10  Score=75.10  Aligned_cols=46  Identities=26%  Similarity=0.388  Sum_probs=42.2

Q ss_pred             HCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEEEEECC
Q ss_conf             0028975999920045738899999999978997899999983068
Q gi|254780309|r   13 KHVAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILTFSRSLK   58 (59)
Q Consensus        13 ~~i~gk~vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~~lar~~~   58 (59)
                      .+++||+|+|||||++||.|+..+++.|++.||++|++++.+..++
T Consensus       199 ~dV~gk~~IIVDDiidTGgTl~~aa~~Lk~~GA~~V~a~~THglfs  244 (286)
T PRK01132        199 IDSNGKKILIVDDIISTGGTIAKSSRILRDKGASKIYVSAVHGLFV  244 (286)
T ss_pred             CCEEEEEEEEEECHHHCHHHHHHHHHHHHHCCCCEEEEEEECCCCC
T ss_conf             2146415999815021238999999999987998499999682067


No 20 
>PRK01999 consensus
Probab=98.98  E-value=7.2e-10  Score=74.74  Aligned_cols=48  Identities=25%  Similarity=0.345  Sum_probs=43.0

Q ss_pred             HHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEEEEECC
Q ss_conf             210028975999920045738899999999978997899999983068
Q gi|254780309|r   11 VSKHVAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILTFSRSLK   58 (59)
Q Consensus        11 ~~~~i~gk~vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~~lar~~~   58 (59)
                      ...+++||+++|||||++||.|+..+++.|+++||++|++++.+..++
T Consensus       206 ~~gdV~Gk~~IIVDDiIdTGgTl~~aa~~L~~~GA~~V~~~~THglfs  253 (311)
T PRK01999        206 IIGDVKGKNVILVDDMVDTAGTITKAADLMMEKGAKSVRAIASHAVMS  253 (311)
T ss_pred             CCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCC
T ss_conf             343547966999754444347899999999855997389999455458


No 21 
>PRK02458 ribose-phosphate pyrophosphokinase; Provisional
Probab=98.98  E-value=7.7e-10  Score=74.59  Aligned_cols=47  Identities=32%  Similarity=0.396  Sum_probs=42.6

Q ss_pred             HHCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEEEEECC
Q ss_conf             10028975999920045738899999999978997899999983068
Q gi|254780309|r   12 SKHVAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILTFSRSLK   58 (59)
Q Consensus        12 ~~~i~gk~vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~~lar~~~   58 (59)
                      ..+++||+++|||||++||.|+..+++.|++.||++|++++.+..++
T Consensus       213 vgdV~Gr~vIIVDDiIdTGgTl~~aa~~Lk~~GA~~V~~~~THglfs  259 (323)
T PRK02458        213 IGDVSGKKAILIDDILNTGKTFAEAAKILERSGATEIYAVASHGLFA  259 (323)
T ss_pred             CCCCCCCEEEEECCHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCC
T ss_conf             36668966787620232248899999999964997689999764257


No 22 
>PRK03092 ribose-phosphate pyrophosphokinase; Provisional
Probab=98.97  E-value=7.8e-10  Score=74.55  Aligned_cols=48  Identities=40%  Similarity=0.431  Sum_probs=42.9

Q ss_pred             HHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEEEEECC
Q ss_conf             210028975999920045738899999999978997899999983068
Q gi|254780309|r   11 VSKHVAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILTFSRSLK   58 (59)
Q Consensus        11 ~~~~i~gk~vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~~lar~~~   58 (59)
                      ...+++||+|+|||||++||.|+..+++.|+++||++|++++.+..++
T Consensus       195 ~~gdV~Gr~viIVDDiI~TGgTl~~aa~~Lk~~GA~~V~~~~THglfs  242 (304)
T PRK03092        195 VVGDVEGRTCVLVDDMIDTGGTIAGAVEALKEAGAKDVIIAATHGVLS  242 (304)
T ss_pred             CCCCCCCCEEEEECCHHHCCHHHHHHHHHHHHCCCCEEEEEEECCCCC
T ss_conf             456767875999776454373599999999866998399999793459


No 23 
>PRK07199 phosphoribosylpyrophosphate synthetase; Provisional
Probab=98.97  E-value=9.7e-10  Score=74.05  Aligned_cols=47  Identities=30%  Similarity=0.263  Sum_probs=42.4

Q ss_pred             HHCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEEEEECC
Q ss_conf             10028975999920045738899999999978997899999983068
Q gi|254780309|r   12 SKHVAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILTFSRSLK   58 (59)
Q Consensus        12 ~~~i~gk~vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~~lar~~~   58 (59)
                      ..+++||+++|||||++||.|+..+++.|++.||++|++++.+..++
T Consensus       206 ~~~v~gk~~IIVDDiIdTGgTl~~aa~~Lk~~GA~~V~~~aTHgvfs  252 (301)
T PRK07199        206 LSAWAGRTPVLVDDIVSTGRTLIEAARQLLAAGAASPVCVGVHALFA  252 (301)
T ss_pred             CCCCCCCCEEEECCHHHCHHHHHHHHHHHHHCCCCEEEEEEECCCCC
T ss_conf             54558995478664221437799999999986998589999786478


No 24 
>PRK04923 ribose-phosphate pyrophosphokinase; Provisional
Probab=98.97  E-value=8.1e-10  Score=74.47  Aligned_cols=48  Identities=33%  Similarity=0.390  Sum_probs=42.9

Q ss_pred             HHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEEEEECC
Q ss_conf             210028975999920045738899999999978997899999983068
Q gi|254780309|r   11 VSKHVAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILTFSRSLK   58 (59)
Q Consensus        11 ~~~~i~gk~vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~~lar~~~   58 (59)
                      ...+++||+++|||||++||.|+..+++.|+++||++|++++.+..++
T Consensus       211 ~~gdV~Gk~~IIVDDiIdTGgTl~~aa~~Lk~~GA~~V~~~~THglfs  258 (319)
T PRK04923        211 IIGDVQGKTCVLVDDLVDTAGTLCAAAAALKQRGALKVVAYITHPVLS  258 (319)
T ss_pred             CCCCCCCCEEEEECCHHCCCHHHHHHHHHHHHCCCCEEEEEEECCCCC
T ss_conf             444437966999664320651299999999875998689999797688


No 25 
>PRK00934 ribose-phosphate pyrophosphokinase; Provisional
Probab=98.97  E-value=9.6e-10  Score=74.08  Aligned_cols=46  Identities=30%  Similarity=0.419  Sum_probs=42.3

Q ss_pred             HCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEEEEECC
Q ss_conf             0028975999920045738899999999978997899999983068
Q gi|254780309|r   13 KHVAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILTFSRSLK   58 (59)
Q Consensus        13 ~~i~gk~vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~~lar~~~   58 (59)
                      .+++||+|+|||||++||.|+..+++.|++.||++|++++.+..++
T Consensus       200 ~dV~Gr~~IIvDDiidTGgTl~~aa~~Lk~~GA~~V~~~~THglfs  245 (286)
T PRK00934        200 LDVKGKDVLIVDDIISTGGTMAKAISILKEQGAKKIYVSCVHPVLV  245 (286)
T ss_pred             CCCCCCEEEEECCHHHCHHHHHHHHHHHHHCCCCEEEEEEECCCCC
T ss_conf             2225878999656221538899999999986998699999790078


No 26 
>PRK04117 consensus
Probab=98.96  E-value=9e-10  Score=74.22  Aligned_cols=48  Identities=33%  Similarity=0.378  Sum_probs=43.0

Q ss_pred             HHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEEEEECC
Q ss_conf             210028975999920045738899999999978997899999983068
Q gi|254780309|r   11 VSKHVAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILTFSRSLK   58 (59)
Q Consensus        11 ~~~~i~gk~vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~~lar~~~   58 (59)
                      ...+++||+|+|||||++||.|+..+++.|++.||++|++++.+..++
T Consensus       205 ~~gdV~Gk~vIIVDDiI~TGgTi~~aa~~L~~~GA~~V~~~~THglfs  252 (309)
T PRK04117        205 IIGDVKGKDVILVDDMIDTAGTIVKAAEALKEKGATSVMACCTHAVLS  252 (309)
T ss_pred             CCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCC
T ss_conf             456648986897572565279999999999866997489999455458


No 27 
>PRK02039 consensus
Probab=98.96  E-value=9e-10  Score=74.22  Aligned_cols=48  Identities=29%  Similarity=0.295  Sum_probs=43.0

Q ss_pred             HHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEEEEECC
Q ss_conf             210028975999920045738899999999978997899999983068
Q gi|254780309|r   11 VSKHVAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILTFSRSLK   58 (59)
Q Consensus        11 ~~~~i~gk~vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~~lar~~~   58 (59)
                      ...+++||+++|||||++||.|+..+++.|+++||++|++++.+..++
T Consensus       208 ~igdV~Gk~~IIVDDiIdTGgTl~~aa~~Lk~~GA~~V~~~~THgvfs  255 (316)
T PRK02039        208 IIGEVEGRTCVIMDDMVDTAGTLCKAAQVLKERGAKQVFAYATHPVLS  255 (316)
T ss_pred             CCCCCCCCEEEEECCHHHCHHHHHHHHHHHHHCCCCEEEEEEECCCCC
T ss_conf             466538972671172554568899999999976998579999784257


No 28 
>PRK01259 ribose-phosphate pyrophosphokinase; Provisional
Probab=98.96  E-value=9e-10  Score=74.23  Aligned_cols=47  Identities=36%  Similarity=0.369  Sum_probs=42.4

Q ss_pred             HHCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEEEEECC
Q ss_conf             10028975999920045738899999999978997899999983068
Q gi|254780309|r   12 SKHVAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILTFSRSLK   58 (59)
Q Consensus        12 ~~~i~gk~vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~~lar~~~   58 (59)
                      ..+++||+++|||||++||.|+..+++.|+++||++|++++.+..++
T Consensus       203 iGdV~Gk~vIIvDDiI~TGgTl~~aa~~Lk~~GA~~V~~~~THglfs  249 (309)
T PRK01259        203 IGDVEGRDCILVDDMIDTGGTLCKAAEALKERGAKSVFAYATHPVLS  249 (309)
T ss_pred             CCCCCCCEEEEECCHHHCCHHHHHHHHHHHHCCCCEEEEEEECHHCC
T ss_conf             67756643999765343456599999999756996699998763139


No 29 
>PRK05038 consensus
Probab=98.95  E-value=9.1e-10  Score=74.21  Aligned_cols=48  Identities=35%  Similarity=0.374  Sum_probs=43.0

Q ss_pred             HHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEEEEECC
Q ss_conf             210028975999920045738899999999978997899999983068
Q gi|254780309|r   11 VSKHVAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILTFSRSLK   58 (59)
Q Consensus        11 ~~~~i~gk~vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~~lar~~~   58 (59)
                      ...+++||+++|||||++||.|+..+++.|++.||++|++++.+..++
T Consensus       207 ~~gdV~Gk~~iIVDDiIdTGgTl~~aa~~Lk~~GA~~V~~~~THglfs  254 (315)
T PRK05038        207 IIGDVAGRDCILVDDMIDTGGTLCKAAEALKERGAKRVFAYATHPVFS  254 (315)
T ss_pred             CCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCC
T ss_conf             456434413799757222515899999999965998635998653558


No 30 
>PRK04554 consensus
Probab=98.95  E-value=9.5e-10  Score=74.09  Aligned_cols=48  Identities=29%  Similarity=0.342  Sum_probs=43.1

Q ss_pred             HHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEEEEECC
Q ss_conf             210028975999920045738899999999978997899999983068
Q gi|254780309|r   11 VSKHVAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILTFSRSLK   58 (59)
Q Consensus        11 ~~~~i~gk~vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~~lar~~~   58 (59)
                      ...+++||+++|||||++||.|+..+++.|+++||++|++++.+..++
T Consensus       209 ~vgdV~Gk~~IIVDDiIdTGgTl~~aa~~Lk~~GA~~V~~~aTHglfs  256 (327)
T PRK04554        209 IIGDIQGRTCLIVDDMIDTANTLCKAAVALKERGAERVLAYASHAVFS  256 (327)
T ss_pred             CCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCC
T ss_conf             556412223672043213506799999999976998789998791606


No 31 
>pfam00156 Pribosyltran Phosphoribosyl transferase domain. This family includes a range of diverse phosphoribosyl transferase enzymes. This family includes: Adenine phosphoribosyltransferase EC:2.4.2.7. Hypoxanthine-guanine-xanthine phosphoribosyltransferase. Hypoxanthine phosphoribosyltransferase EC:2.4.2.8. Ribose-phosphate pyrophosphokinase i EC:2.7.6.1. Amidophosphoribosyltransferase EC:2.4.2.14. Orotate phosphoribosyltransferase EC:2.4.2.10. Uracil phosphoribosyltransferase EC:2.4.2.9. Xanthine-guanine phosphoribosyltransferase EC:2.4.2.22. In Arabidopsis, At the very N-terminus of this domain is the ATP-GTP-binding domain.
Probab=98.87  E-value=4.9e-09  Score=70.25  Aligned_cols=45  Identities=36%  Similarity=0.548  Sum_probs=40.6

Q ss_pred             HHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEEE
Q ss_conf             021002897599992004573889999999997899789999998
Q gi|254780309|r   10 YVSKHVAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILTFS   54 (59)
Q Consensus        10 ~~~~~i~gk~vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~~la   54 (59)
                      .....++||+||||||+++||.|+.++.+.|+++|++.|.++++.
T Consensus        79 ~~~~~~~g~~VliVDDv~~tG~Tl~~~~~~l~~~g~~~v~~~vli  123 (123)
T pfam00156        79 RLPELLKGKRVLIVDDVLDTGGTLRAAVELLKKAGAKVVGVAVLV  123 (123)
T ss_pred             CCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCEEEEEEEEC
T ss_conf             243236999999984876843899999999994799099999989


No 32 
>PRK02277 orotate phosphoribosyltransferase-like protein; Provisional
Probab=98.73  E-value=2e-08  Score=66.90  Aligned_cols=42  Identities=36%  Similarity=0.509  Sum_probs=39.8

Q ss_pred             HCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEEE
Q ss_conf             002897599992004573889999999997899789999998
Q gi|254780309|r   13 KHVAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILTFS   54 (59)
Q Consensus        13 ~~i~gk~vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~~la   54 (59)
                      ..++||+|+||||++|||.|+.++++.++++|+..+.++++.
T Consensus       137 a~V~Gk~VlIVDDViTTG~T~~e~ie~l~~~Ga~vv~~~Vlv  178 (201)
T PRK02277        137 ASVAGKRCVIVDDVITSGNTMKETIEYLKEHGAKPVAVVVLV  178 (201)
T ss_pred             CCCCCCEEEEEEECCCCCCCHHHHHHHHHHCCCEEEEEEEEE
T ss_conf             343787899997023778249999999998699799999999


No 33 
>COG0034 PurF Glutamine phosphoribosylpyrophosphate amidotransferase [Nucleotide transport and metabolism]
Probab=98.62  E-value=4.5e-08  Score=65.03  Aligned_cols=49  Identities=29%  Similarity=0.431  Sum_probs=43.5

Q ss_pred             HHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEEEEECC
Q ss_conf             0210028975999920045738899999999978997899999983068
Q gi|254780309|r   10 YVSKHVAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILTFSRSLK   58 (59)
Q Consensus        10 ~~~~~i~gk~vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~~lar~~~   58 (59)
                      +.+..++||.|++|||.|.+|+|+..+++.|+++||++|++..-+..++
T Consensus       341 pvr~~v~GKrVvlVDDSIVRGTTsr~IV~mlReAGAkEVHvriasP~i~  389 (470)
T COG0034         341 PVREVVKGKRVVLVDDSIVRGTTSRRIVQMLREAGAKEVHVRIASPPIR  389 (470)
T ss_pred             CHHHHHCCCEEEEECCCCCCCCCHHHHHHHHHHHCCCEEEEEECCCCCC
T ss_conf             0178858976999726514576699999999971887889984289756


No 34 
>COG0856 Orotate phosphoribosyltransferase homologs [Nucleotide transport and metabolism]
Probab=98.58  E-value=1.3e-07  Score=62.52  Aligned_cols=50  Identities=28%  Similarity=0.415  Sum_probs=42.6

Q ss_pred             CEEEECCHHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEEEE
Q ss_conf             60882510210028975999920045738899999999978997899999983
Q gi|254780309|r    3 NAFNVPQYVSKHVAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILTFSR   55 (59)
Q Consensus         3 gaf~i~~~~~~~i~gk~vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~~lar   55 (59)
                      |.|.-+   -..+.||+|+||||++|||.|+.++++.|++.|++.+-+.+|+-
T Consensus       130 G~iS~N---FasV~gK~cvIVDDvittG~Ti~E~Ie~l~e~g~kPv~v~VL~d  179 (203)
T COG0856         130 GSISSN---FASVEGKRCVIVDDVITTGSTIKETIEQLKEEGGKPVLVVVLAD  179 (203)
T ss_pred             CEEECC---CCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEEEEC
T ss_conf             623123---21115754899832225672199999999975997479999972


No 35 
>PRK09246 amidophosphoribosyltransferase; Provisional
Probab=98.58  E-value=6.9e-08  Score=64.03  Aligned_cols=48  Identities=23%  Similarity=0.373  Sum_probs=43.0

Q ss_pred             HHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEEEEECC
Q ss_conf             210028975999920045738899999999978997899999983068
Q gi|254780309|r   11 VSKHVAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILTFSRSLK   58 (59)
Q Consensus        11 ~~~~i~gk~vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~~lar~~~   58 (59)
                      .+..++||+|+||||.|.+|+|+..+++.|+++||++|++..-+..+.
T Consensus       352 i~~~i~gK~vvlVDDSIVRGtT~k~Iv~~Lr~aGAkeVh~riasPpi~  399 (503)
T PRK09246        352 IRAEFKGKNVLLVDDSIVRGTTSEQIVQMARDAGAKKVYFASAAPPVR  399 (503)
T ss_pred             CHHHCCCCEEEEEECCEECCCCHHHHHHHHHHCCCCEEEEEECCCCCC
T ss_conf             643156976999845531164199999999975998899996799857


No 36 
>PRK08525 amidophosphoribosyltransferase; Provisional
Probab=98.55  E-value=8.8e-08  Score=63.47  Aligned_cols=49  Identities=29%  Similarity=0.396  Sum_probs=43.2

Q ss_pred             HHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEEEEECC
Q ss_conf             0210028975999920045738899999999978997899999983068
Q gi|254780309|r   10 YVSKHVAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILTFSRSLK   58 (59)
Q Consensus        10 ~~~~~i~gk~vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~~lar~~~   58 (59)
                      +.+..++||.|+||||.+.+|+|+..+++.|+++||++|++..-+..+.
T Consensus       333 p~~~~i~gK~vvlvDDSIVRGtT~k~ii~~Lr~aGakeVh~~i~sPpi~  381 (445)
T PRK08525        333 PMRKVLEGKRIVVIDDSIVRGTTSKKIVSLLRAAGASEIHMAIACPEIK  381 (445)
T ss_pred             EHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCC
T ss_conf             2345217986999817615577899999999977998899996899968


No 37 
>PRK07631 amidophosphoribosyltransferase; Provisional
Probab=98.54  E-value=8.9e-08  Score=63.45  Aligned_cols=48  Identities=27%  Similarity=0.417  Sum_probs=42.8

Q ss_pred             HHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEEEEEC
Q ss_conf             021002897599992004573889999999997899789999998306
Q gi|254780309|r   10 YVSKHVAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILTFSRSL   57 (59)
Q Consensus        10 ~~~~~i~gk~vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~~lar~~   57 (59)
                      +.+..++||+|++|||.|.+|+|+..+++.|+++||++|++..-+..+
T Consensus       341 ~~~~~v~gK~vvlVDDSIVRGtT~k~iv~~Lr~aGAkeVh~ri~sPpi  388 (475)
T PRK07631        341 AVRGVVEGKRVVMVDDSIVRGTTSRRIVTMLREAGATEVHVRISSPPI  388 (475)
T ss_pred             ECCCCCCCCEEEEEECCEECCCCHHHHHHHHHHCCCCEEEEEECCCCC
T ss_conf             442003897379974435106419999999997699889999689985


No 38 
>PRK06781 amidophosphoribosyltransferase; Provisional
Probab=98.54  E-value=9.2e-08  Score=63.35  Aligned_cols=48  Identities=35%  Similarity=0.463  Sum_probs=42.9

Q ss_pred             HHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEEEEECC
Q ss_conf             210028975999920045738899999999978997899999983068
Q gi|254780309|r   11 VSKHVAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILTFSRSLK   58 (59)
Q Consensus        11 ~~~~i~gk~vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~~lar~~~   58 (59)
                      .+..++||+|+||||.|.+|+|+..+++.|+++||++|++..-+..++
T Consensus       342 ~~~~i~gK~vvlVDDSIVRGtT~k~iv~~Lr~aGAkeVh~ri~sPpi~  389 (471)
T PRK06781        342 VRGVVEGKRVVMIDDSIVRGTTSKRIVRMLREAGATEVHVRIASPPLK  389 (471)
T ss_pred             CCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCC
T ss_conf             100048988999816605575699999999977998899996899857


No 39 
>PRK07349 amidophosphoribosyltransferase; Provisional
Probab=98.53  E-value=9.7e-08  Score=63.24  Aligned_cols=48  Identities=29%  Similarity=0.423  Sum_probs=42.8

Q ss_pred             HHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEEEEEC
Q ss_conf             021002897599992004573889999999997899789999998306
Q gi|254780309|r   10 YVSKHVAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILTFSRSL   57 (59)
Q Consensus        10 ~~~~~i~gk~vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~~lar~~   57 (59)
                      +.+..++||+|+||||.|.+|+|+..+++.|+++||++|++..-+..+
T Consensus       365 ~~~~~i~gK~vvlvDDSIVRGtT~k~iv~~Lr~aGAkeVh~riasPpi  412 (495)
T PRK07349        365 PLKDVLAGKRIIIVDDSIVRGTTSRKIVKALRDAGATEVHMRISSPPV  412 (495)
T ss_pred             ECHHHHCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCC
T ss_conf             367885898599982660557469999999997699889999689985


No 40 
>TIGR01090 apt adenine phosphoribosyltransferase; InterPro: IPR005764    Adenine phosphoribosyltransferase (APRTase, 2.4.2.7 from EC) is a widely distributed enzyme, and its deficiency in humans causes the accumulation of 2,8-dihydroxyadenine. It is the sole catalyst for adenine recycling in most eukaryotes.  AMP + diphosphate = adenine + 5-phospho-alpha-D-ribose 1-diphosphate  ; GO: 0003999 adenine phosphoribosyltransferase activity, 0006168 adenine salvage.
Probab=98.53  E-value=1.7e-07  Score=61.86  Aligned_cols=51  Identities=25%  Similarity=0.479  Sum_probs=44.8

Q ss_pred             CCEEEECCHHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEE
Q ss_conf             7608825102100289759999200457388999999999789978999999
Q gi|254780309|r    2 RNAFNVPQYVSKHVAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILTF   53 (59)
Q Consensus         2 ~gaf~i~~~~~~~i~gk~vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~~l   53 (59)
                      +..+.++.+--. ..|++||||||++-||.|+.++.+.+++.|++-+..+++
T Consensus       100 ~d~lEIh~DA~~-~~g~RVliVDDLlATGGT~~A~~eLi~~Lggev~~~aFl  150 (175)
T TIGR01090       100 KDSLEIHKDAIK-IPGQRVLIVDDLLATGGTAEATLELIKKLGGEVVEAAFL  150 (175)
T ss_pred             CCEEEEEHHHHH-CCCCEEEEEECCCCCHHHHHHHHHHHHHHCCEEEEEEEE
T ss_conf             303534111364-078908998322012678999999999859616874555


No 41 
>PRK08341 amidophosphoribosyltransferase; Provisional
Probab=98.53  E-value=8.7e-08  Score=63.50  Aligned_cols=49  Identities=29%  Similarity=0.413  Sum_probs=43.3

Q ss_pred             HHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEEEEECC
Q ss_conf             0210028975999920045738899999999978997899999983068
Q gi|254780309|r   10 YVSKHVAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILTFSRSLK   58 (59)
Q Consensus        10 ~~~~~i~gk~vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~~lar~~~   58 (59)
                      +.+..++||+|+||||.|.+|+|+..+++.|+++||++|++..-+..+.
T Consensus       327 ~~~~~i~gK~vvlvDDSIVRGtT~k~iv~~Lr~aGAkeVh~ri~sPpi~  375 (442)
T PRK08341        327 PVREVINGKRVVLVDDSIVRGTTMKRIVKMLRDAGAREVHVRIASPPIR  375 (442)
T ss_pred             EEEEEECCCCEEEEECCEEECCCHHHHHHHHHHCCCCEEEEEECCCCCC
T ss_conf             1000127981499614341054299999999976998899996899857


No 42 
>PRK07272 amidophosphoribosyltransferase; Provisional
Probab=98.53  E-value=1.1e-07  Score=63.04  Aligned_cols=47  Identities=34%  Similarity=0.450  Sum_probs=42.6

Q ss_pred             HHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEEEEEC
Q ss_conf             21002897599992004573889999999997899789999998306
Q gi|254780309|r   11 VSKHVAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILTFSRSL   57 (59)
Q Consensus        11 ~~~~i~gk~vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~~lar~~   57 (59)
                      .+..++||+|+||||.|.+|+|+..+++.|+++||++|++..-+..+
T Consensus       344 ~~~~i~gK~vvlVDDSIVRGtT~k~iv~~Lr~aGAkeVh~rissPpi  390 (484)
T PRK07272        344 VSGVVKGKRVVMVDDSIVRGTTSRRIVKLLKEAGAKEVHVRIASPEL  390 (484)
T ss_pred             CHHHHCCCEEEEEECCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCC
T ss_conf             54553797599982541126759999999997799889999689985


No 43 
>PRK05793 amidophosphoribosyltransferase; Provisional
Probab=98.53  E-value=9.9e-08  Score=63.19  Aligned_cols=49  Identities=33%  Similarity=0.434  Sum_probs=43.4

Q ss_pred             HHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEEEEECC
Q ss_conf             0210028975999920045738899999999978997899999983068
Q gi|254780309|r   10 YVSKHVAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILTFSRSLK   58 (59)
Q Consensus        10 ~~~~~i~gk~vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~~lar~~~   58 (59)
                      +.+..++||+|++|||.|.+|+|+..+++.|+++||++|++..-+..++
T Consensus       349 ~~~~~v~gK~vvlvDDSIVRGtT~k~iv~~Lr~aGakeVh~ri~sPpi~  397 (472)
T PRK05793        349 PLKVNVEGKRVVLIDDSIVRGTTSKRLVESLRRAGAKEVHFRVSSPPVK  397 (472)
T ss_pred             EEEECCCCCEEEEEECCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCC
T ss_conf             2021006986999807705576799999999977999899996899968


No 44 
>PRK09123 amidophosphoribosyltransferase; Provisional
Probab=98.53  E-value=1.1e-07  Score=63.02  Aligned_cols=48  Identities=25%  Similarity=0.339  Sum_probs=42.8

Q ss_pred             HHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEEEEEC
Q ss_conf             021002897599992004573889999999997899789999998306
Q gi|254780309|r   10 YVSKHVAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILTFSRSL   57 (59)
Q Consensus        10 ~~~~~i~gk~vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~~lar~~   57 (59)
                      +.+..++||.|+||||.|.+|+|+..+++.|+++||++|++..-+..+
T Consensus       344 ~~~~~i~gK~vvlVDDSIVRGtT~k~iv~~Lr~aGAkeVh~ri~sPpi  391 (480)
T PRK09123        344 ANRAVIEGKRVVLVDDSIVRGTTSRKIVQMLRDAGAKEVHLRIASPPT  391 (480)
T ss_pred             ECCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCC
T ss_conf             033345898299980661536769999999997799889999689985


No 45 
>KOG1448 consensus
Probab=98.53  E-value=1.3e-07  Score=62.59  Aligned_cols=48  Identities=27%  Similarity=0.231  Sum_probs=42.9

Q ss_pred             HHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEEEEECC
Q ss_conf             210028975999920045738899999999978997899999983068
Q gi|254780309|r   11 VSKHVAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILTFSRSLK   58 (59)
Q Consensus        11 ~~~~i~gk~vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~~lar~~~   58 (59)
                      +..+++||+++||||+++|+.|+..+++.|.++||++|+.++-+-..+
T Consensus       208 LVGDv~gkvaIlVDDm~dt~GTl~~aa~~L~~~GA~kV~a~~THgVfs  255 (316)
T KOG1448         208 LVGDVKGKVAILVDDMADTCGTLIKAADKLLEHGAKKVYAIVTHGVFS  255 (316)
T ss_pred             EEECCCCCEEEEECCCCCCCCHHHHHHHHHHHCCCCEEEEEECCEECC
T ss_conf             985367868999436411364199999999865874599997132226


No 46 
>PRK06388 amidophosphoribosyltransferase; Provisional
Probab=98.51  E-value=1.1e-07  Score=62.96  Aligned_cols=48  Identities=25%  Similarity=0.372  Sum_probs=42.8

Q ss_pred             HHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEEEEEC
Q ss_conf             021002897599992004573889999999997899789999998306
Q gi|254780309|r   10 YVSKHVAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILTFSRSL   57 (59)
Q Consensus        10 ~~~~~i~gk~vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~~lar~~   57 (59)
                      +.+..++||.|+||||.|.+|+|+..+++.|+++||++|++..-+..+
T Consensus       349 ~i~~~i~gK~vvlVDDSIVRGtT~k~iv~~Lr~aGAkeVh~ri~sPpi  396 (474)
T PRK06388        349 PIREVISGKRIVLVDDSIVRGNTMRFIVKIMRKYGAKEVHVRIGSPHI  396 (474)
T ss_pred             EEEEEECCCEEEEECCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCC
T ss_conf             502441798899981661656679999999997799889999789996


No 47 
>PRK07847 amidophosphoribosyltransferase; Provisional
Probab=98.51  E-value=1.3e-07  Score=62.54  Aligned_cols=49  Identities=24%  Similarity=0.398  Sum_probs=43.4

Q ss_pred             HHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEEEEECC
Q ss_conf             0210028975999920045738899999999978997899999983068
Q gi|254780309|r   10 YVSKHVAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILTFSRSLK   58 (59)
Q Consensus        10 ~~~~~i~gk~vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~~lar~~~   58 (59)
                      +.+..++||+|+||||.|.+|+|+..+++.|+++||++|++..-+..++
T Consensus       335 ~i~~~i~gK~vvlVDDSIVRGtT~k~iv~~Lr~aGAkeVh~riasPpi~  383 (489)
T PRK07847        335 PLREVIRGKRLVVVDDSIVRGNTQRALVRMLREAGAAEVHVRIASPPVK  383 (489)
T ss_pred             CCHHEECCCEEEEECCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCC
T ss_conf             0264177987999847835667799999999976998899996899857


No 48 
>PRK05205 bifunctional pyrimidine regulatory protein PyrR uracil phosphoribosyltransferase; Provisional
Probab=98.49  E-value=2.5e-07  Score=61.02  Aligned_cols=44  Identities=30%  Similarity=0.430  Sum_probs=40.0

Q ss_pred             HHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHCC-CCEEEEEEEE
Q ss_conf             2100289759999200457388999999999789-9789999998
Q gi|254780309|r   11 VSKHVAGLKILLIDDVYTTGATAKCAAIALKKAG-AMTVSILTFS   54 (59)
Q Consensus        11 ~~~~i~gk~vliVDDiitTG~T~~~~~~~L~~~g-a~~V~~~~la   54 (59)
                      .+.+++||+|+|||||+.||.|+.++.+.|...| |++|..++|.
T Consensus        89 i~~~~~gk~ViLVDDVL~TGrTlraal~~l~~~grP~~I~lavLV  133 (176)
T PRK05205         89 IPFDIEGKTVILVDDVLYTGRTIRAALDALFDYGRPARVQLAVLV  133 (176)
T ss_pred             CCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEEEEE
T ss_conf             764447888999831022368999999988636988679999999


No 49 
>KOG0572 consensus
Probab=98.45  E-value=2e-07  Score=61.50  Aligned_cols=49  Identities=29%  Similarity=0.409  Sum_probs=43.4

Q ss_pred             HHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEEEEECC
Q ss_conf             0210028975999920045738899999999978997899999983068
Q gi|254780309|r   10 YVSKHVAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILTFSRSLK   58 (59)
Q Consensus        10 ~~~~~i~gk~vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~~lar~~~   58 (59)
                      +++..++||.|+||||.|..|+|+..+++.|+++||++|++...+..++
T Consensus       349 ~l~~~~~GKrvvlVDDSIVRGtTs~~IVkmlreaGAkeVh~riAsPpi~  397 (474)
T KOG0572         349 PLRQNFEGKRVVLVDDSIVRGTTSSPIVKMLREAGAKEVHIRIASPPIK  397 (474)
T ss_pred             CCHHHCCCCEEEEEECCEECCCCHHHHHHHHHHCCCCEEEEEECCCCCC
T ss_conf             3234407856999736542267538999999875885789882188644


No 50 
>TIGR01134 purF amidophosphoribosyltransferase; InterPro: IPR005854    Purine nucleotides are synthesised both via the de novo pathway and via the salvage pathway and are vital for cell functions and cell proliferation through DNA and RNA syntheses and ATP energy supply. Amidophosphoribosyltransferase (2.4.2.14 from EC) is the rate-limiting enzyme in the de novo pathway of purine ribonucleotide synthesis and is regulated by feedback inhibition by AMP and GMP .  5-phospho-beta-D-ribosylamine + diphosphate + L-glutamate = L-glutamine + 5-phospho-alpha-D-ribose 1-diphosphate + H2O   This family contains sequences which are members of the MEROPS peptidase family C44 (glutamine phosphoribosylpyrophosphate amidotransferase precursor, clan PB(C)) and sequences which are classed as non-peptidase homologs. These are sequences either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity.  ; GO: 0004044 amidophosphoribosyltransferase activity, 0009113 purine base biosynthetic process.
Probab=98.44  E-value=2.2e-07  Score=61.34  Aligned_cols=46  Identities=30%  Similarity=0.403  Sum_probs=40.7

Q ss_pred             HHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEEEE
Q ss_conf             0210028975999920045738899999999978997899999983
Q gi|254780309|r   10 YVSKHVAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILTFSR   55 (59)
Q Consensus        10 ~~~~~i~gk~vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~~lar   55 (59)
                      +.+..++||.|+||||.|-.|+|.+.+++.|+++||++|++-.-|.
T Consensus       353 P~r~~~~GkrVvlVDDSiVRGTTSr~vV~mlR~AGA~EVH~riasP  398 (467)
T TIGR01134       353 PVRSVVEGKRVVLVDDSIVRGTTSRQVVEMLRDAGAREVHVRIASP  398 (467)
T ss_pred             CCHHHHCCCEEEEEECCEECCCHHHHHHHHHHHCCCEEEEEEECCC
T ss_conf             4303336975899942412071378999999872983898762588


No 51 
>KOG3367 consensus
Probab=98.39  E-value=4.6e-07  Score=59.61  Aligned_cols=48  Identities=17%  Similarity=0.241  Sum_probs=43.6

Q ss_pred             ECCHHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEEE
Q ss_conf             251021002897599992004573889999999997899789999998
Q gi|254780309|r    7 VPQYVSKHVAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILTFS   54 (59)
Q Consensus         7 i~~~~~~~i~gk~vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~~la   54 (59)
                      +..+....+.||+|+|||||++||.||......+++.+++.+.+++|.
T Consensus       115 ig~d~l~~ltgK~VliVeDIvdTGrTl~~Lls~~~~~k~~~v~vasLL  162 (216)
T KOG3367         115 IGGDDLSTLTGKNVLIVEDIVDTGRTLSTLLSHMKAYKPSMVKVASLL  162 (216)
T ss_pred             ECCCCHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEEEC
T ss_conf             647877773577289997401356107899998886086311432200


No 52 
>PRK07322 adenine phosphoribosyltransferase; Provisional
Probab=98.35  E-value=9.4e-07  Score=57.92  Aligned_cols=44  Identities=20%  Similarity=0.378  Sum_probs=39.0

Q ss_pred             HHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEEE
Q ss_conf             21002897599992004573889999999997899789999998
Q gi|254780309|r   11 VSKHVAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILTFS   54 (59)
Q Consensus        11 ~~~~i~gk~vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~~la   54 (59)
                      ....++|++|+||||++.||.|+.++.+.+++.|+..+.++++-
T Consensus       114 ~~~~l~G~rVlivDDvi~tGgt~~a~~~l~~~~Ga~vvg~~ai~  157 (178)
T PRK07322        114 DAEKLKGKRVAIVDDVVSTGGSLTAMERLVERAGGEVVAKAAIL  157 (178)
T ss_pred             HHHHCCCCEEEEEEEHHHCCHHHHHHHHHHHHCCCEEEEEEEEE
T ss_conf             22113798599996344238379999999998699899999999


No 53 
>COG2236 Predicted phosphoribosyltransferases [General function prediction only]
Probab=98.26  E-value=5.3e-07  Score=59.26  Aligned_cols=47  Identities=30%  Similarity=0.406  Sum_probs=37.4

Q ss_pred             ECCHHHHC-CCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEE
Q ss_conf             25102100-289759999200457388999999999789978999999
Q gi|254780309|r    7 VPQYVSKH-VAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILTF   53 (59)
Q Consensus         7 i~~~~~~~-i~gk~vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~~l   53 (59)
                      +..+...+ +.||+|||||||.|||.||..+.+.|++..+..+..+++
T Consensus        76 v~~~~~~d~l~GkkVLIVDDI~DTG~Tl~~a~~~l~~~~p~e~rta~l  123 (192)
T COG2236          76 VKYPITIDPLSGKKVLIVDDIVDTGETLELALEELKKLAPAEVRTAVL  123 (192)
T ss_pred             EECCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCHHHHHHHH
T ss_conf             612765465589858998233376176999999998537066644333


No 54 
>PRK02304 adenine phosphoribosyltransferase; Provisional
Probab=98.21  E-value=2.6e-06  Score=55.57  Aligned_cols=40  Identities=30%  Similarity=0.428  Sum_probs=37.5

Q ss_pred             CCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEEE
Q ss_conf             2897599992004573889999999997899789999998
Q gi|254780309|r   15 VAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILTFS   54 (59)
Q Consensus        15 i~gk~vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~~la   54 (59)
                      -+|.+|+||||++.||.|+.++.+.+++.|++.+.++++.
T Consensus       111 ~~g~~VlivDDvlaTGGT~~a~~~Lv~~~ga~v~~~~~li  150 (174)
T PRK02304        111 KPGDRVLIVDDLLATGGTLEAAIKLLERLGAEVVGAAFVI  150 (174)
T ss_pred             CCCCEEEEEEEHHHHCHHHHHHHHHHHHCCCEEEEEEEEE
T ss_conf             8999999997154307179999999998799899999999


No 55 
>PRK13811 orotate phosphoribosyltransferase; Provisional
Probab=98.20  E-value=2.8e-06  Score=55.37  Aligned_cols=41  Identities=37%  Similarity=0.566  Sum_probs=37.6

Q ss_pred             CCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEEE
Q ss_conf             02897599992004573889999999997899789999998
Q gi|254780309|r   14 HVAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILTFS   54 (59)
Q Consensus        14 ~i~gk~vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~~la   54 (59)
                      .++|++|++|||++|||.+..++++.++++|+..+.++++.
T Consensus       101 ~~~G~~VlvVEDViTTG~S~~e~i~~l~~~G~~V~~v~~iv  141 (170)
T PRK13811        101 DVAGKRVLLVEDVTTSGGSALYGIEQLRSAGAVVDDVVTVV  141 (170)
T ss_pred             CCCCCEEEEEEEEECCCCCHHHHHHHHHHCCCEEEEEEEEE
T ss_conf             34899899999644578118999999998899799999999


No 56 
>PRK00455 pyrE orotate phosphoribosyltransferase; Validated
Probab=98.18  E-value=2.6e-06  Score=55.55  Aligned_cols=41  Identities=32%  Similarity=0.500  Sum_probs=38.0

Q ss_pred             CCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEEEE
Q ss_conf             28975999920045738899999999978997899999983
Q gi|254780309|r   15 VAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILTFSR   55 (59)
Q Consensus        15 i~gk~vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~~lar   55 (59)
                      .+|++|+||||++|||.+..++++.++++|+..+.++++.-
T Consensus       109 ~~g~~VliVeDViTtG~S~~~ai~~l~~~G~~V~~v~vivD  149 (200)
T PRK00455        109 LKGKRVLVVEDVITTGGSVLEAVEAIRAAGAEVVGVAVIVD  149 (200)
T ss_pred             CCCCCEEEEEEHHHCCCCHHHHHHHHHHCCCEEEEEEEEEE
T ss_conf             55453488763010470199999999987997999999995


No 57 
>COG0461 PyrE Orotate phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=98.16  E-value=4.5e-06  Score=54.24  Aligned_cols=40  Identities=38%  Similarity=0.524  Sum_probs=37.6

Q ss_pred             CCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEEE
Q ss_conf             2897599992004573889999999997899789999998
Q gi|254780309|r   15 VAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILTFS   54 (59)
Q Consensus        15 i~gk~vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~~la   54 (59)
                      .+|+.|++|||++|||.++.++++.++++|+..+.++++.
T Consensus       110 ~~G~kVvvVEDViTTG~Si~eai~~l~~~G~~V~gv~~iv  149 (201)
T COG0461         110 VKGEKVVVVEDVITTGGSILEAVEALREAGAEVVGVAVIV  149 (201)
T ss_pred             CCCCEEEEEEECCCCCHHHHHHHHHHHHCCCEEEEEEEEE
T ss_conf             8998999997201678769999999998698598999999


No 58 
>TIGR01367 pyrE_Therm orotate phosphoribosyltransferase; InterPro: IPR006273   This group of sequences are a distinct clade of orotate phosphoribosyltransferases. Members include the experimentally determined example from Thermus aquaticus and additional examples from Caulobacter crescentus, Helicobacter pylori (Campylobacter pylori), Mesorhizobium loti, and related species. ; GO: 0004588 orotate phosphoribosyltransferase activity, 0019856 pyrimidine base biosynthetic process.
Probab=98.16  E-value=3.6e-06  Score=54.78  Aligned_cols=51  Identities=22%  Similarity=0.335  Sum_probs=41.2

Q ss_pred             CEEEECCHHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEEE
Q ss_conf             6088251021002897599992004573889999999997899789999998
Q gi|254780309|r    3 NAFNVPQYVSKHVAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILTFS   54 (59)
Q Consensus         3 gaf~i~~~~~~~i~gk~vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~~la   54 (59)
                      |.|++.+.+.-+ .|..+++|+||+|||.++.++++.+++.|+..|-++|+.
T Consensus        98 g~mkLRrgF~v~-pGek~v~vEDvvTTGGS~~e~~~~i~~~GG~vvg~a~ii  148 (205)
T TIGR01367        98 GGMKLRRGFEVK-PGEKVVVVEDVVTTGGSLLEAIKAIEELGGQVVGLACII  148 (205)
T ss_pred             CCCEECCCEEEC-CCCEEEEEEEEECCCHHHHHHHHHHHHCCCCEEEEEEHH
T ss_conf             752011120336-997799996211047448999999985798279842112


No 59 
>PRK13812 orotate phosphoribosyltransferase; Provisional
Probab=98.15  E-value=3.8e-06  Score=54.64  Aligned_cols=39  Identities=33%  Similarity=0.487  Sum_probs=36.7

Q ss_pred             CCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEEE
Q ss_conf             897599992004573889999999997899789999998
Q gi|254780309|r   16 AGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILTFS   54 (59)
Q Consensus        16 ~gk~vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~~la   54 (59)
                      +|++|+||||++|||.+..++++.+++.|+..+.++|+.
T Consensus       106 ~g~rVlivEDViTTG~S~~eai~~l~~~G~~V~~v~viv  144 (174)
T PRK13812        106 DGEEVVVLEDIATTGQSAVDAVEALRDAGATVNRVLVVV  144 (174)
T ss_pred             CCCEEEEEEEEECCCCCHHHHHHHHHHCCCEEEEEEEEE
T ss_conf             786699998644578019999999998799799999999


No 60 
>TIGR01091 upp uracil phosphoribosyltransferase; InterPro: IPR005765    The enzyme uracil phosphoribosyltransferase (UPRT, 2.4.2.9 from EC) catalyzes conversion of uracil to uridine 5'-monophosphate utilizing 5'-phosphoribosyl--1-pyrophosphate (PRPP).  UMP + diphosphate = uracil + 5-phospho-alpha-D-ribose 1-diphosphate  ; GO: 0004845 uracil phosphoribosyltransferase activity, 0006223 uracil salvage.
Probab=98.12  E-value=5.3e-06  Score=53.86  Aligned_cols=50  Identities=22%  Similarity=0.327  Sum_probs=44.1

Q ss_pred             CCHHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEEEEEC
Q ss_conf             51021002897599992004573889999999997899789999998306
Q gi|254780309|r    8 PQYVSKHVAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILTFSRSL   57 (59)
Q Consensus         8 ~~~~~~~i~gk~vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~~lar~~   57 (59)
                      ...++.++.+++++|+|.|+-||.|+.++.+.|+++|+++|.++++-.+.
T Consensus       119 y~KLP~~~~~~~v~v~DPMLATGgt~~~a~~~lk~~g~~~I~~~~~vAAP  168 (213)
T TIGR01091       119 YSKLPEDIDERTVIVLDPMLATGGTMIAALDLLKKRGAKKIKVLSIVAAP  168 (213)
T ss_pred             CCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCCEEEEEEEECH
T ss_conf             20054346888699972873430589999999985399944999998255


No 61 
>PRK13809 orotate phosphoribosyltransferase; Provisional
Probab=98.12  E-value=5.5e-06  Score=53.77  Aligned_cols=40  Identities=28%  Similarity=0.453  Sum_probs=36.7

Q ss_pred             CCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEEE
Q ss_conf             2897599992004573889999999997899789999998
Q gi|254780309|r   15 VAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILTFS   54 (59)
Q Consensus        15 i~gk~vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~~la   54 (59)
                      .+|+.|++|||++|||.++.++++.|++.|+....++++-
T Consensus       116 ~~G~kVvvIEDViTTGgSil~ai~~lr~~G~~V~~v~viv  155 (206)
T PRK13809        116 TPGQTCLVINDMVSSGKSIIETAVALEENGLVVREALVFL  155 (206)
T ss_pred             CCCCEEEEEEEEECCCHHHHHHHHHHHHCCCEEEEEEEEE
T ss_conf             8998899997334468009999999998799699999999


No 62 
>PRK13810 orotate phosphoribosyltransferase; Provisional
Probab=98.11  E-value=5.1e-06  Score=53.96  Aligned_cols=40  Identities=25%  Similarity=0.430  Sum_probs=36.8

Q ss_pred             CCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEEE
Q ss_conf             2897599992004573889999999997899789999998
Q gi|254780309|r   15 VAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILTFS   54 (59)
Q Consensus        15 i~gk~vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~~la   54 (59)
                      -+|.+|++|||++|||.++.++++.+++.|+..+.++++.
T Consensus       120 ~~g~rVlvVEDViTTGgS~~eai~~l~~~G~~V~~v~~iv  159 (187)
T PRK13810        120 KPEDRIVMLEDVTTSGGSVRDAIEVVREAGAIVKYVITVV  159 (187)
T ss_pred             CCCCEEEEEEEEECCCCCHHHHHHHHHHCCCEEEEEEEEE
T ss_conf             7998899998543568239999999998899799999999


No 63 
>PRK12560 adenine phosphoribosyltransferase; Provisional
Probab=98.09  E-value=7.1e-06  Score=53.17  Aligned_cols=39  Identities=26%  Similarity=0.451  Sum_probs=36.7

Q ss_pred             CCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEEE
Q ss_conf             897599992004573889999999997899789999998
Q gi|254780309|r   16 AGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILTFS   54 (59)
Q Consensus        16 ~gk~vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~~la   54 (59)
                      +|.+|+||||+++||.|+.++.+.+++.|+.-+.++++-
T Consensus       110 ~GdrVlIVDDvlaTGGTl~a~~~ll~~~Ga~V~~i~~vI  148 (184)
T PRK12560        110 AGDRVAIIDDTLSTGGTVIALIKAIQNSGGIVKDLICAV  148 (184)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEEEEE
T ss_conf             999899995120567589999999998699899999999


No 64 
>PRK05500 bifunctional orotidine 5'-phosphate decarboxylase/orotate phosphoribosyltransferase protein; Validated
Probab=98.08  E-value=8e-06  Score=52.90  Aligned_cols=40  Identities=30%  Similarity=0.434  Sum_probs=36.8

Q ss_pred             CCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEEE
Q ss_conf             2897599992004573889999999997899789999998
Q gi|254780309|r   15 VAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILTFS   54 (59)
Q Consensus        15 i~gk~vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~~la   54 (59)
                      .+|+.|+|||||+|||.++.++++.|++.|++...++++-
T Consensus       391 ~~G~~vlIIdDViTsG~Si~e~i~~L~~~G~~V~~~vV~l  430 (478)
T PRK05500        391 HPGETVVVVDDILITGKSVMEGAEKLKSAGLNVRDIVVFI  430 (478)
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEEEEE
T ss_conf             8998899996012677879999999998799387799999


No 65 
>TIGR00336 pyrE orotate phosphoribosyltransferase; InterPro: IPR004467 Orotate phosphoribosyl transferase (OPRTase) is involved in the biosynthesis of pyrimidine nucleotides. Alpha-D-ribosyldiphosphate 5-phosphate (PRPP) and orotate are utilised to form pyrophosphate and orotidine 5 -monophosphate (OMP) in the presence of divalent cations, preferably Mg2+. In a number of eukaryotes, this protein is fused to a domain that catalyses the reaction (4.1.1.23 from EC). The combined activity of 2.4.2.10 from EC and 4.1.1.23 from EC is termed uridine 5 -monophosphate synthase. The conserved Lys (K) residue at position 101 of the seed alignment has been proposed as the active site for the enzyme.; GO: 0004588 orotate phosphoribosyltransferase activity, 0006221 pyrimidine nucleotide biosynthetic process.
Probab=98.06  E-value=7.5e-06  Score=53.03  Aligned_cols=41  Identities=27%  Similarity=0.447  Sum_probs=36.9

Q ss_pred             CCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEEE
Q ss_conf             02897599992004573889999999997899789999998
Q gi|254780309|r   14 HVAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILTFS   54 (59)
Q Consensus        14 ~i~gk~vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~~la   54 (59)
                      -.+|+.|+||||++|||..+.++.+.+.++|+.-..++++-
T Consensus       114 ~~eG~kvvvveDV~TtG~s~~~A~~~i~~ag~~V~~v~~~v  154 (187)
T TIGR00336       114 LLEGDKVVVVEDVITTGGSILEAVEAIQEAGGEVAGVIVIV  154 (187)
T ss_pred             CCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCEEEEEEEEE
T ss_conf             57896389995143424799999999986188899999998


No 66 
>COG0503 Apt Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins [Nucleotide transport and metabolism]
Probab=98.04  E-value=1.3e-05  Score=51.76  Aligned_cols=41  Identities=32%  Similarity=0.405  Sum_probs=38.0

Q ss_pred             CCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEEEEE
Q ss_conf             89759999200457388999999999789978999999830
Q gi|254780309|r   16 AGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILTFSRS   56 (59)
Q Consensus        16 ~gk~vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~~lar~   56 (59)
                      .|.+|+||||++.||.|+.+..+.+.++|+.-+.+.++-.-
T Consensus       115 ~G~rVlIVDDllaTGgT~~a~~~Ll~~~ga~vvg~~~~ie~  155 (179)
T COG0503         115 PGDRVLIVDDLLATGGTALALIELLEQAGAEVVGAAFVIEL  155 (179)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEEEEEEE
T ss_conf             99989999654015678999999999889989999999972


No 67 
>PRK06031 phosphoribosyltransferase; Provisional
Probab=97.99  E-value=1.5e-05  Score=51.47  Aligned_cols=49  Identities=24%  Similarity=0.300  Sum_probs=42.6

Q ss_pred             EEECCHHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEE
Q ss_conf             8825102100289759999200457388999999999789978999999
Q gi|254780309|r    5 FNVPQYVSKHVAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILTF   53 (59)
Q Consensus         5 f~i~~~~~~~i~gk~vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~~l   53 (59)
                      .-+.+...+-++||.|+||||++.||+|+.+..+.|...|+.-+.+.+.
T Consensus       142 lylDp~~lpLl~GrRV~lVDDVISSG~Si~a~l~LL~~~G~e~v~igva  190 (233)
T PRK06031        142 LYIDPRMLPLLRGRRVALIDDVISSGASIVAALRLLATCGIEPAGIGAA  190 (233)
T ss_pred             EEECHHHHHHHCCCEEEEEECHHCCCHHHHHHHHHHHHCCCCEEEEEEE
T ss_conf             5677444124328779998212215565999999999759973788763


No 68 
>COG1926 Predicted phosphoribosyltransferases [General function prediction only]
Probab=97.97  E-value=1.2e-05  Score=51.86  Aligned_cols=42  Identities=33%  Similarity=0.438  Sum_probs=38.5

Q ss_pred             HHCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEE
Q ss_conf             100289759999200457388999999999789978999999
Q gi|254780309|r   12 SKHVAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILTF   53 (59)
Q Consensus        12 ~~~i~gk~vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~~l   53 (59)
                      ..+++||.|+||||=+-||+||..+++.++.+++++|.+++=
T Consensus       119 ~~~~~g~~VIlVDDGiATGatm~aAi~~~r~~~~~~IviAVP  160 (220)
T COG1926         119 VPSLKGRTVILVDDGIATGATMKAAVRALRAKGPKEIVIAVP  160 (220)
T ss_pred             CCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEECC
T ss_conf             878888989997077212077999999998628860899844


No 69 
>PRK00129 upp uracil phosphoribosyltransferase; Reviewed
Probab=97.89  E-value=2.4e-05  Score=50.32  Aligned_cols=48  Identities=21%  Similarity=0.370  Sum_probs=42.8

Q ss_pred             CHHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEEEEE
Q ss_conf             102100289759999200457388999999999789978999999830
Q gi|254780309|r    9 QYVSKHVAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILTFSRS   56 (59)
Q Consensus         9 ~~~~~~i~gk~vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~~lar~   56 (59)
                      ..++.++.+++|+|+|.++.||.|+..+.+.|+++|++++.++++-.+
T Consensus       115 ~kLP~~i~~~~VlllDPmlATG~s~~~ai~~L~~~G~~~I~~v~~ias  162 (208)
T PRK00129        115 EKLPSDIDERTVIVVDPMLATGGSMIAAIDLLKKRGAKRIKVLCLVAA  162 (208)
T ss_pred             HHCCCCCCCCEEEEECCHHHCCHHHHHHHHHHHHCCCCEEEEEEEEEC
T ss_conf             328644466879987855643766999999999669973899999964


No 70 
>TIGR01251 ribP_PPkin ribose-phosphate pyrophosphokinase; InterPro: IPR005946    Synonyms: phosphoribosylpyrophosphate synthetase     Phosphoribosyldiphosphate synthetase (PRPPsase, 2.7.6.1 from EC) catalyzes the transfer of an intact diphosphate (PP) group from ATP to ribose-5-phosphate (R-5-P), which results in the formation of AMP and 5-phospho-D-ribosyl--1-diphosphate (PRPP).  ATP + D-ribose 5-phosphate = AMP + 5-phospho-alpha-D-ribose 1-diphosphate  PRPP is an essential precursor for purine and pyrimidine nucleotides, both in the de novo synthesis and in the salvage pathway as well as in the synthesis of pyridine nucleotide coenzymes. The activity of PRPPsase is highly regulated. Besides competitive inhibition at the substrate binding sites, most PRPPsases are regulated in an allosteric manner, in which ADP generally acts as the most potent inhibitor. In some systems, close homologs lacking enzymatic activity exist and perform regulatory functions.; GO: 0000287 magnesium ion binding, 0004749 ribose phosphate diphosphokinase activity, 0009165 nucleotide biosynthetic process.
Probab=97.76  E-value=4.4e-05  Score=48.89  Aligned_cols=49  Identities=31%  Similarity=0.334  Sum_probs=43.7

Q ss_pred             HHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEEEEECC
Q ss_conf             0210028975999920045738899999999978997899999983068
Q gi|254780309|r   10 YVSKHVAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILTFSRSLK   58 (59)
Q Consensus        10 ~~~~~i~gk~vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~~lar~~~   58 (59)
                      ....+++||.++++||+++||.|+..+.+.|++.|+++++..+......
T Consensus       205 ~~~~~~~g~~~~~~dd~~~~gg~~~~~~~~l~~~g~~~~~~~~~h~~~~  253 (316)
T TIGR01251       205 PLLGDVEGKDVVLVDDIIDTGGTLVKAAELLKEKGAKKVYAAATHGVFS  253 (316)
T ss_pred             EEECCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEEECCHHC
T ss_conf             1000236752788602100213589999998634844278765122002


No 71 
>COG0035 Upp Uracil phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=97.74  E-value=6.1e-05  Score=48.12  Aligned_cols=48  Identities=19%  Similarity=0.358  Sum_probs=42.8

Q ss_pred             HHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHC-CCCEEEEEEEEEEC
Q ss_conf             0210028975999920045738899999999978-99789999998306
Q gi|254780309|r   10 YVSKHVAGLKILLIDDVYTTGATAKCAAIALKKA-GAMTVSILTFSRSL   57 (59)
Q Consensus        10 ~~~~~i~gk~vliVDDiitTG~T~~~~~~~L~~~-ga~~V~~~~lar~~   57 (59)
                      .++.++++++++++|.++.||+|+..+.+.|+++ |++++.++++-.+.
T Consensus       117 KLP~~~~~~~viv~DPMLATG~s~i~ai~~L~~~G~~~~I~~v~~vAap  165 (210)
T COG0035         117 KLPEDIDERTVIVLDPMLATGGSAIAAIDLLKKRGGPKNIKVVSLVAAP  165 (210)
T ss_pred             HCCCCCCCCEEEEECCHHHCCHHHHHHHHHHHHHCCCCEEEEEEEEECH
T ss_conf             5898646885999786141267699999999971897528999999648


No 72 
>KOG1712 consensus
Probab=97.64  E-value=9.5e-05  Score=47.09  Aligned_cols=39  Identities=28%  Similarity=0.461  Sum_probs=35.9

Q ss_pred             CCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEEE
Q ss_conf             897599992004573889999999997899789999998
Q gi|254780309|r   16 AGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILTFS   54 (59)
Q Consensus        16 ~gk~vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~~la   54 (59)
                      .|.++++|||++.||.|+.++.+.+.+.|++-+-.+|+-
T Consensus       121 ~g~rvvvVDDllATGGTl~AA~~Ll~r~ga~vvE~~~vi  159 (183)
T KOG1712         121 PGQRVVVVDDLLATGGTLAAATELLERVGAEVVECACVI  159 (183)
T ss_pred             CCCEEEEEECHHHCCCCHHHHHHHHHHHCCEEEEEEEEE
T ss_conf             987589983001137418999999997254788789999


No 73 
>PRK08558 adenine phosphoribosyltransferase; Provisional
Probab=97.50  E-value=0.00018  Score=45.55  Aligned_cols=40  Identities=25%  Similarity=0.461  Sum_probs=37.0

Q ss_pred             CCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEEEE
Q ss_conf             8975999920045738899999999978997899999983
Q gi|254780309|r   16 AGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILTFSR   55 (59)
Q Consensus        16 ~gk~vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~~lar   55 (59)
                      +|-+||||||.+.||.|+..+.+.++++||.-+.+.++--
T Consensus       175 ~g~~VLIVDD~~~tG~T~~~~~~l~~~~ga~v~G~~~li~  214 (238)
T PRK08558        175 RGERVLIVDDIIRSGETQRALLELCRQAGADVVGVFFLIA  214 (238)
T ss_pred             CCCEEEEEHHHHHCCHHHHHHHHHHHHCCCEEEEEEEEEE
T ss_conf             9986999835634373899999999986997999999998


No 74 
>PRK09177 xanthine-guanine phosphoribosyltransferase; Validated
Probab=97.49  E-value=8.9e-05  Score=47.22  Aligned_cols=35  Identities=29%  Similarity=0.365  Sum_probs=27.7

Q ss_pred             CCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEE
Q ss_conf             0289759999200457388999999999789978999999
Q gi|254780309|r   14 HVAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILTF   53 (59)
Q Consensus        14 ~i~gk~vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~~l   53 (59)
                      ...||+|||||||.+||.|+..+.+.+.+     +.+++|
T Consensus        81 ~~~gkkVLIVDDI~DTG~Tl~~vk~~~~~-----~~~Atl  115 (156)
T PRK09177         81 EGDGEGFLVVDDLVDTGGTARAVREMYPK-----AHFATV  115 (156)
T ss_pred             CCCCCEEEEEECCCCCCHHHHHHHHHCCC-----CEEEEE
T ss_conf             77786289995343663789999986788-----559999


No 75 
>COG2065 PyrR Pyrimidine operon attenuation protein/uracil phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=97.48  E-value=0.00024  Score=44.92  Aligned_cols=44  Identities=27%  Similarity=0.456  Sum_probs=38.3

Q ss_pred             HHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHCC-CCEEEEEEEE
Q ss_conf             2100289759999200457388999999999789-9789999998
Q gi|254780309|r   11 VSKHVAGLKILLIDDVYTTGATAKCAAIALKKAG-AMTVSILTFS   54 (59)
Q Consensus        11 ~~~~i~gk~vliVDDiitTG~T~~~~~~~L~~~g-a~~V~~~~la   54 (59)
                      ...++.||.|+||||++-||.|+.++.+.|...| |.+|..++|.
T Consensus        90 ~~~di~~k~VILVDDVLytGRTIRAAldal~d~GRPa~I~LavLV  134 (179)
T COG2065          90 LPFDITGKRVILVDDVLYTGRTIRAALDALVDYGRPAKIQLAVLV  134 (179)
T ss_pred             CCCCCCCCEEEEEEEECCCCCCHHHHHHHHHHCCCCCEEEEEEEE
T ss_conf             752446878999820111472499999999864985358999998


No 76 
>PRK09219 xanthine phosphoribosyltransferase; Validated
Probab=97.38  E-value=0.00032  Score=44.24  Aligned_cols=39  Identities=26%  Similarity=0.287  Sum_probs=35.8

Q ss_pred             CCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEEE
Q ss_conf             897599992004573889999999997899789999998
Q gi|254780309|r   16 AGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILTFS   54 (59)
Q Consensus        16 ~gk~vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~~la   54 (59)
                      +|-+||||||.+.||.|+....+.++++||.-+.+.++-
T Consensus       116 ~gdrVliIDDflatGgt~~~~~~l~~~~ga~v~g~~~vi  154 (189)
T PRK09219        116 EEDKVLIIDDFLANGQAALGLIDIIEQAGAEVAGVGIVI  154 (189)
T ss_pred             CCCEEEEEHHHHHCCHHHHHHHHHHHHCCCEEEEEEEEE
T ss_conf             987599874545446789999999998799899999999


No 77 
>KOG1503 consensus
Probab=96.58  E-value=0.0033  Score=38.77  Aligned_cols=46  Identities=24%  Similarity=0.327  Sum_probs=41.1

Q ss_pred             HCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEEEEECC
Q ss_conf             0028975999920045738899999999978997899999983068
Q gi|254780309|r   13 KHVAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILTFSRSLK   58 (59)
Q Consensus        13 ~~i~gk~vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~~lar~~~   58 (59)
                      .++-||--++|||+++---.+.++++.|++.||-++++.+....++
T Consensus       243 gdvggriaimvddiiddvqsfvaaae~lkergaykiyv~athglls  288 (354)
T KOG1503         243 GDVGGRIAIMVDDIIDDVQSFVAAAEVLKERGAYKIYVMATHGLLS  288 (354)
T ss_pred             ECCCCEEEEEEHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCC
T ss_conf             2268658998533577699999999999855855899986045345


No 78 
>PRK09213 purine operon repressor; Provisional
Probab=95.00  E-value=0.059  Score=31.99  Aligned_cols=43  Identities=26%  Similarity=0.311  Sum_probs=39.0

Q ss_pred             CCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEEEEEC
Q ss_conf             2897599992004573889999999997899789999998306
Q gi|254780309|r   15 VAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILTFSRSL   57 (59)
Q Consensus        15 i~gk~vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~~lar~~   57 (59)
                      =+|.+||||||-+--|.|+.-..+.+++.+|.-+.+-++.-+.
T Consensus       194 ~~gsrVLiIDDFmk~Ggt~~Gm~~L~~Ef~a~vvGigV~ie~~  236 (274)
T PRK09213        194 KEGSNVLIVDDFMKAGGTINGMISLLKEFDAEVVGIGVLVENK  236 (274)
T ss_pred             CCCCEEEEECHHHHCCCHHHHHHHHHHHCCCEEEEEEEEEECC
T ss_conf             9998399983454476088999999997198797899999548


No 79 
>KOG1017 consensus
Probab=94.39  E-value=0.11  Score=30.54  Aligned_cols=47  Identities=19%  Similarity=0.307  Sum_probs=39.0

Q ss_pred             ECCHHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCC--EEEEEEE
Q ss_conf             2510210028975999920045738899999999978997--8999999
Q gi|254780309|r    7 VPQYVSKHVAGLKILLIDDVYTTGATAKCAAIALKKAGAM--TVSILTF   53 (59)
Q Consensus         7 i~~~~~~~i~gk~vliVDDiitTG~T~~~~~~~L~~~ga~--~V~~~~l   53 (59)
                      +...++++|.-|.||+.=.++.||.|+..+.+.|+++|..  .++.+.|
T Consensus       179 ~YArfppDI~sR~VLLmYPi~stGnTV~~Av~VL~EhgVp~s~IiL~sL  227 (267)
T KOG1017         179 LYARFPPDITSRRVLLMYPIISTGNTVCKAVEVLKEHGVPDSNIILVSL  227 (267)
T ss_pred             EEEECCCCCCCEEEEEEEEEECCCCCHHHHHHHHHHCCCCCCEEEEEEE
T ss_conf             8774698523216899841304781389999999981999600898774


No 80 
>TIGR01743 purR_Bsub pur operon repressor; InterPro: IPR010078   This entry represents the pur operon repressor PurR of low-GC Gram-positive bacteria. This homodimeric repressor contains a large region homologous to phosphoribosyltransferases and is inhibited by 5-phosphoribosyl 1-pyrophosphate.; GO: 0003677 DNA binding, 0016564 transcription repressor activity, 0016481 negative regulation of transcription, 0045982 negative regulation of purine base metabolic process.
Probab=93.81  E-value=0.095  Score=30.88  Aligned_cols=42  Identities=29%  Similarity=0.313  Sum_probs=38.8

Q ss_pred             CCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEEEEEC
Q ss_conf             897599992004573889999999997899789999998306
Q gi|254780309|r   16 AGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILTFSRSL   57 (59)
Q Consensus        16 ~gk~vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~~lar~~   57 (59)
                      +|-+||||||=+--|.|++-.++.|+|-.+.-+.+.+|.-+-
T Consensus       194 ~GS~vL~vDDFmkaGGT~~Gm~~LL~EFda~l~GiGVli~~~  235 (269)
T TIGR01743       194 KGSKVLIVDDFMKAGGTVKGMIELLKEFDAELAGIGVLIDNE  235 (269)
T ss_pred             HCCEEEEEECCCCCCCCHHHHHHHHHHHCCCCEEEEEEEECC
T ss_conf             089089995355548702678888876271102322133235


No 81 
>TIGR01744 XPRTase xanthine phosphoribosyltransferase; InterPro: IPR010079   This entry represent a xanthine-specific phosphoribosyltransferase of Bacillus subtilis and closely related proteins from other species, mostly from other Gram-positive bacteria. The adjacent gene is a xanthine transporter; Bacillus subtilis can import xanthine for the purine salvage pathway or for catabolism to obtain nitrogen.; GO: 0016763 transferase activity transferring pentosyl groups, 0043101 purine salvage, 0046110 xanthine metabolic process.
Probab=90.54  E-value=0.48  Score=27.08  Aligned_cols=45  Identities=24%  Similarity=0.257  Sum_probs=35.5

Q ss_pred             EECCHHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf             82510210028975999920045738899999999978997899999
Q gi|254780309|r    6 NVPQYVSKHVAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILT   52 (59)
Q Consensus         6 ~i~~~~~~~i~gk~vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~~   52 (59)
                      .+..++..  ..-+||+|||=+-.|.+..-+.+..+++||+-+.+=+
T Consensus       108 ~vS~~fL~--~~D~vl~IDDFLA~G~a~~gL~~i~~qA~A~~~G~G~  152 (191)
T TIGR01744       108 IVSKEFLS--DQDRVLIIDDFLANGDAARGLVDIAEQAGAKIAGIGI  152 (191)
T ss_pred             EEECCCCC--CCCEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEE
T ss_conf             98614378--9988999951346661678899999861995885447


No 82 
>pfam01488 Shikimate_DH Shikimate / quinate 5-dehydrogenase. This family contains both shikimate and quinate dehydrogenases. Shikimate 5-dehydrogenase catalyses the conversion of shikimate to 5-dehydroshikimate. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites 3-dehydroquinate and dehydroshikimate.
Probab=80.53  E-value=3.7  Score=22.30  Aligned_cols=41  Identities=32%  Similarity=0.431  Sum_probs=34.0

Q ss_pred             CCHHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf             510210028975999920045738899999999978997899999
Q gi|254780309|r    8 PQYVSKHVAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILT   52 (59)
Q Consensus         8 ~~~~~~~i~gk~vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~~   52 (59)
                      .+..-.+++||++++|-    +|..-..+++.|.+.|+++|+++.
T Consensus         3 a~~~~~~l~~~~vlVIG----aG~~~~~~~~~L~~~g~~~i~v~n   43 (134)
T pfam01488         3 AKKIFGDLKGKKVLLIG----AGEMARLAAKHLLSKGAKKITIAN   43 (134)
T ss_pred             HHHHHCCCCCCEEEEEC----CCHHHHHHHHHHHHCCCCEEEEEC
T ss_conf             77763881489899999----609999999999975998899954


No 83 
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=72.84  E-value=8.6  Score=20.30  Aligned_cols=36  Identities=31%  Similarity=0.544  Sum_probs=31.1

Q ss_pred             HCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf             0028975999920045738899999999978997899999
Q gi|254780309|r   13 KHVAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILT   52 (59)
Q Consensus        13 ~~i~gk~vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~~   52 (59)
                      .++++|+|+|+-    +|.+...++..|.+.|+++|+++.
T Consensus        15 ~~~~~k~vlIlG----aGGaarai~~aL~~~g~~~I~i~n   50 (155)
T cd01065          15 IELKGKKVLILG----AGGAARAVAYALAELGAAKIVIVN   50 (155)
T ss_pred             CCCCCCEEEEEC----CCHHHHHHHHHHHHCCCCEEEEEE
T ss_conf             985799999986----758999999999971998228860


No 84 
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=64.06  E-value=7.6  Score=20.61  Aligned_cols=40  Identities=10%  Similarity=0.180  Sum_probs=33.0

Q ss_pred             CCHHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf             51021002897599992004573889999999997899789999
Q gi|254780309|r    8 PQYVSKHVAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSIL   51 (59)
Q Consensus         8 ~~~~~~~i~gk~vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~   51 (59)
                      ......++.+|++++|.    +|.+-..+++.|.+.|++.+.+.
T Consensus       172 a~~~~~~l~~~~vlvvG----aGem~~l~~k~L~~~g~~~i~v~  211 (414)
T PRK13940        172 AKRQLDNISSKNVLIIG----AGQTGELLFRHVTALAPKQIMLA  211 (414)
T ss_pred             HHHHCCCCCCCEEEEEC----CCHHHHHHHHHHHHCCCCEEEEE
T ss_conf             99862871228389966----86478999999997699879994


No 85 
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=62.94  E-value=8.3  Score=20.40  Aligned_cols=40  Identities=20%  Similarity=0.380  Sum_probs=33.0

Q ss_pred             CHHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf             10210028975999920045738899999999978997899999
Q gi|254780309|r    9 QYVSKHVAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILT   52 (59)
Q Consensus         9 ~~~~~~i~gk~vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~~   52 (59)
                      +....++.+|+|++|-    +|..-..++++|.+.|++.|++.-
T Consensus       174 ~~~~~~l~~~~vlviG----aGem~~l~~k~L~~~g~~~i~v~n  213 (429)
T PRK00045        174 KKIFGDLSGKKVLVIG----AGEMGELVAKHLAEKGVRKITVAN  213 (429)
T ss_pred             HHHCCCCCCCEEEEEC----CCHHHHHHHHHHHHCCCCEEEEEC
T ss_conf             9864781206599976----748999999999855998499975


No 86 
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, 
Probab=60.85  E-value=9.8  Score=20.00  Aligned_cols=40  Identities=25%  Similarity=0.396  Sum_probs=32.8

Q ss_pred             CHHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf             10210028975999920045738899999999978997899999
Q gi|254780309|r    9 QYVSKHVAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILT   52 (59)
Q Consensus         9 ~~~~~~i~gk~vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~~   52 (59)
                      +....++.+|++|+|-    +|.+-..+++.|.+.|+.++.+..
T Consensus       170 ~~~~~~l~~~~vLviG----aGem~~l~~~~L~~~g~~~i~v~n  209 (311)
T cd05213         170 EKIFGNLKGKKVLVIG----AGEMGELAAKHLAAKGVAEITIAN  209 (311)
T ss_pred             HHHHCCCCCCEEEEEC----CCHHHHHHHHHHHHCCCCEEEEEC
T ss_conf             9871872116799986----879999999999965998259976


No 87 
>cd01525 RHOD_Kc Member of the Rhodanese Homology Domain superfamily. Included in this CD are the rhodanese-like domains found C-terminal of the serine/threonine protein kinases catalytic (S_TKc) domain and the Tre-2, BUB2p, Cdc16p (TBC) domain. The putative active site Cys residue is not present in this CD.
Probab=57.49  E-value=19  Score=18.40  Aligned_cols=35  Identities=29%  Similarity=0.317  Sum_probs=30.5

Q ss_pred             CCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf             02897599992004573889999999997899789999
Q gi|254780309|r   14 HVAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSIL   51 (59)
Q Consensus        14 ~i~gk~vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~   51 (59)
                      .-+||.|++|+-   .|.+....++.|.+.|-.+|.++
T Consensus        62 k~Kgk~VViV~~---~g~~a~~fa~~Lvk~Gf~rVcvL   96 (105)
T cd01525          62 NYKGKIIVIVSH---SHKHAALFAAFLVKCGVPRVCIL   96 (105)
T ss_pred             HCCCCEEEEECC---CCCCHHHHHHHHHHCCCCEEEEE
T ss_conf             758982999889---98679999999998499869993


No 88 
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=56.33  E-value=20  Score=18.29  Aligned_cols=36  Identities=28%  Similarity=0.443  Sum_probs=30.8

Q ss_pred             HHCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf             10028975999920045738899999999978997899999
Q gi|254780309|r   12 SKHVAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILT   52 (59)
Q Consensus        12 ~~~i~gk~vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~~   52 (59)
                      ..+++||+|++|    =+|+|...++..|.+.| ++|.++.
T Consensus       170 ~~~~~GKrV~VI----G~GaSA~di~~~l~~~g-a~vt~~q  205 (443)
T COG2072         170 PEDLRGKRVLVI----GAGASAVDIAPELAEVG-ASVTLSQ  205 (443)
T ss_pred             HHHCCCCEEEEE----CCCCCHHHHHHHHHHCC-CEEEEEE
T ss_conf             134278879998----98703999999997306-7178985


No 89 
>cd01444 GlpE_ST GlpE sulfurtransferase (ST) and homologs are members of the Rhodanese Homology Domain superfamily. Unlike other rhodanese sulfurtransferases, GlpE is a single domain protein but indications are that it functions as a dimer. The active site contains a catalytically active cysteine.
Probab=53.91  E-value=22  Score=18.07  Aligned_cols=33  Identities=24%  Similarity=0.276  Sum_probs=28.5

Q ss_pred             CCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf             897599992004573889999999997899789999
Q gi|254780309|r   16 AGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSIL   51 (59)
Q Consensus        16 ~gk~vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~   51 (59)
                      ++++|+++   ..+|.....+++.|.+.|-.+|+.+
T Consensus        55 ~~~~ivv~---C~~G~rs~~aa~~L~~~G~~~v~~L   87 (96)
T cd01444          55 RDRPVVVY---CYHGNSSAQLAQALREAGFTDVRSL   87 (96)
T ss_pred             CCCCEEEE---ECCCHHHHHHHHHHHHHCCCCEEEC
T ss_conf             89818998---0896689999999998289833998


No 90 
>cd01528 RHOD_2 Member of the Rhodanese Homology Domain superfamily, subgroup 2. Subgroup 2 includes uncharacterized putative rhodanese-related domains.
Probab=51.25  E-value=25  Score=17.83  Aligned_cols=33  Identities=21%  Similarity=0.196  Sum_probs=28.7

Q ss_pred             CCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf             897599992004573889999999997899789999
Q gi|254780309|r   16 AGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSIL   51 (59)
Q Consensus        16 ~gk~vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~   51 (59)
                      ++++|+++   ..+|.....+++.|++.|-.+|+.+
T Consensus        57 ~d~~iv~~---C~~G~rS~~aa~~L~~~G~~~V~~L   89 (101)
T cd01528          57 PDKDIVVL---CHHGGRSMQVAQWLLRQGFENVYNL   89 (101)
T ss_pred             CCCCEEEE---CCCCHHHHHHHHHHHHCCCCCEEEE
T ss_conf             89808998---3898159999999998599777984


No 91 
>COG4825 Uncharacterized membrane-anchored protein conserved in bacteria [Function unknown]
Probab=50.07  E-value=26  Score=17.72  Aligned_cols=45  Identities=11%  Similarity=0.126  Sum_probs=36.1

Q ss_pred             CHHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEE
Q ss_conf             102100289759999200457388999999999789978999999
Q gi|254780309|r    9 QYVSKHVAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILTF   53 (59)
Q Consensus         9 ~~~~~~i~gk~vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~~l   53 (59)
                      |+....++||+|+|+-|--.--.-+......+++..+-.|.+=.-
T Consensus       172 PD~~n~~~gR~VlIva~~~~~~~dLk~lk~fi~ey~pvlIgVdga  216 (395)
T COG4825         172 PDLDNDLRGRHVLIVADEPSFEDDLKSLKPFIKEYQPVLIGVDGA  216 (395)
T ss_pred             CCCCCHHCCCEEEEECCCCCHHHHHHHHHHHHHHHCCEEEEECCH
T ss_conf             863012047579997389866888999888887508779970550


No 92 
>cd00158 RHOD Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins.
Probab=45.23  E-value=27  Score=17.66  Aligned_cols=34  Identities=29%  Similarity=0.267  Sum_probs=28.6

Q ss_pred             CCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf             2897599992004573889999999997899789999
Q gi|254780309|r   15 VAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSIL   51 (59)
Q Consensus        15 i~gk~vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~   51 (59)
                      -++++|+++..   +|.....++..|++.|-..|+.+
T Consensus        48 ~~~~~iv~~C~---~g~rs~~aa~~L~~~G~~~v~~l   81 (89)
T cd00158          48 DKDKPIVVYCR---SGNRSARAAKLLRKAGGTNVYNL   81 (89)
T ss_pred             CCCCCEEEECC---CCCCCHHHHHHHHHCCCCCEEEE
T ss_conf             68987787759---89812789999998089887990


No 93 
>cd01674 Homoaconitase_Swivel Homoaconitase swivel domain. This family includes homoaconitase and other uncharacterized proteins of the Aconitase family. Homoaconitase is part of an unusual lysine biosynthesis pathway found only in filamentous fungi, in which lysine is synthesized via the alpha-aminoadipate pathway. In this pathway, homoaconitase catalyzes the conversion of cis-homoaconitic acid into homoisocitric acid. The reaction mechanism is believed to be similar to that of other aconitases. This is the swivel domain, which is believed to undergo swivelling conformational change in the enzyme mechanism.
Probab=43.98  E-value=21  Score=18.16  Aligned_cols=48  Identities=25%  Similarity=0.176  Sum_probs=38.6

Q ss_pred             CCHHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEEEE
Q ss_conf             510210028975999920045738899999999978997899999983
Q gi|254780309|r    8 PQYVSKHVAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILTFSR   55 (59)
Q Consensus         8 ~~~~~~~i~gk~vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~~lar   55 (59)
                      .++.....+.-+||+-.+-.=+|++-+++.-.|+..|.+.|..-.+|+
T Consensus        36 dp~f~~~~k~g~ILVaG~NFGcGSSREhA~~aL~~~Gi~aVIA~SFa~   83 (129)
T cd01674          36 DSEFSTKTKQGDILVSGFNFGTGSSREQAATALLAKGIPLVVSGSFGN   83 (129)
T ss_pred             CCCCCCCCCCCCEEEECCCCCCCCCHHHHHHHHHHCCCCEEEECHHHH
T ss_conf             975333367888899668657673488999999984997999852999


No 94 
>PRK00439 leuD 3-isopropylmalate dehydratase small subunit; Reviewed
Probab=43.20  E-value=25  Score=17.83  Aligned_cols=49  Identities=27%  Similarity=0.350  Sum_probs=41.1

Q ss_pred             CCHHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEEEEE
Q ss_conf             5102100289759999200457388999999999789978999999830
Q gi|254780309|r    8 PQYVSKHVAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILTFSRS   56 (59)
Q Consensus         8 ~~~~~~~i~gk~vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~~lar~   56 (59)
                      .+++...++.-+|++-..-.=.|++-.++...|+..|.+.|..-+++|-
T Consensus        39 ~p~f~~~~~~gdIiVaG~NFG~GSSRE~A~~al~~~Gi~~VIA~SFa~I   87 (163)
T PRK00439         39 DPEFAKKVKPGDIIVAGKNFGCGSSREHAPLALKAAGVSAVIAKSFARI   87 (163)
T ss_pred             CCCCCCCCCCCCEEEECCCCCCCCCHHHHHHHHHHCCCCEEEEHHHHHH
T ss_conf             8640014668758996885168886799999999859879985237899


No 95 
>pfam00694 Aconitase_C Aconitase C-terminal domain. Members of this family usually also match to pfam00330. This domain undergoes conformational change in the enzyme mechanism.
Probab=43.03  E-value=25  Score=17.76  Aligned_cols=39  Identities=26%  Similarity=0.376  Sum_probs=32.5

Q ss_pred             CCE-EEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEEEE
Q ss_conf             975-999920045738899999999978997899999983
Q gi|254780309|r   17 GLK-ILLIDDVYTTGATAKCAAIALKKAGAMTVSILTFSR   55 (59)
Q Consensus        17 gk~-vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~~lar   55 (59)
                      +.+ |++-++-+-+|++-.+++..|+..|.+.|..-++++
T Consensus        73 ~~~~ilvag~nfG~GSSREhA~~al~~~Gi~~via~Sf~~  112 (131)
T pfam00694        73 GAPILVIGGKNYGCGSSREHAAWAPRDLGIKAVIAKSFAR  112 (131)
T ss_pred             CCCEEEEECCCCCCCCHHHHHHHHHHHCCCCEEEECCHHH
T ss_conf             9987998247667775489999999983995999813999


No 96 
>PRK00886 2-phosphosulfolactate phosphatase; Provisional
Probab=42.63  E-value=34  Score=17.07  Aligned_cols=43  Identities=16%  Similarity=0.214  Sum_probs=27.8

Q ss_pred             EEECCHHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf             882510210028975999920045738899999999978997899999
Q gi|254780309|r    5 FNVPQYVSKHVAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILT   52 (59)
Q Consensus         5 f~i~~~~~~~i~gk~vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~~   52 (59)
                      |......+.++.++.+++| ||+-..+|+..    ...+|++.|..+.
T Consensus         6 ~~~~~~i~~~~~~~~vVVi-DVLRAtTti~~----al~~Ga~~ViP~~   48 (240)
T PRK00886          6 IHTADDIPEDILPKTAVVI-DVLRATSTIAT----ALNNGAEAVIPFS   48 (240)
T ss_pred             EECHHHCCCCCCCCEEEEE-ECCCHHHHHHH----HHHCCCCEEEEEC
T ss_conf             9586658866789959999-64774999999----9987997799838


No 97 
>KOG4203 consensus
Probab=41.75  E-value=26  Score=17.74  Aligned_cols=35  Identities=34%  Similarity=0.482  Sum_probs=29.4

Q ss_pred             HHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCC
Q ss_conf             210028975999920045738899999999978997
Q gi|254780309|r   11 VSKHVAGLKILLIDDVYTTGATAKCAAIALKKAGAM   46 (59)
Q Consensus        11 ~~~~i~gk~vliVDDiitTG~T~~~~~~~L~~~ga~   46 (59)
                      ++.++... |++.|-++.||++...+...|...|..
T Consensus       381 lP~~is~~-V~ll~p~~~tg~~~~~a~~~ll~~gv~  415 (473)
T KOG4203         381 LPKDISDR-VLLLDPVLATGNSAMMAIILLLDHGVP  415 (473)
T ss_pred             CCCCCCCC-EEEECCHHHCCHHHHHHHHHHHHCCCC
T ss_conf             86333400-165052131454589999998747993


No 98 
>PRK10693 response regulator of RpoS; Provisional
Probab=40.66  E-value=34  Score=17.08  Aligned_cols=31  Identities=23%  Similarity=0.265  Sum_probs=21.5

Q ss_pred             CCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCE
Q ss_conf             0289759999200457388999999999789978
Q gi|254780309|r   14 HVAGLKILLIDDVYTTGATAKCAAIALKKAGAMT   47 (59)
Q Consensus        14 ~i~gk~vliVDDiitTG~T~~~~~~~L~~~ga~~   47 (59)
                      .+.||.||||||--....   .....|...|...
T Consensus         4 pl~gkkILIVDDd~~~r~---~l~~~L~~~G~~V   34 (337)
T PRK10693          4 PLVGKQILIVEDEPVFRS---LLDSWFSSLGATT   34 (337)
T ss_pred             CCCCCEEEEECCCHHHHH---HHHHHHHHCCCEE
T ss_conf             888998999949999999---9999999789999


No 99 
>smart00450 RHOD Rhodanese Homology Domain. An alpha beta fold found duplicated in the Rhodanese protein. The the Cysteine containing enzymatically active version of the domain is also found in the CDC25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and stress proteins such as Senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions with a loss of the cysteine are also seen in Dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases. These are likely to play a role in protein interactions.
Probab=38.12  E-value=40  Score=16.67  Aligned_cols=34  Identities=21%  Similarity=0.221  Sum_probs=28.6

Q ss_pred             CCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf             2897599992004573889999999997899789999
Q gi|254780309|r   15 VAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSIL   51 (59)
Q Consensus        15 i~gk~vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~   51 (59)
                      -++++|++.+   .+|.....++..|...|-.+|+.+
T Consensus        54 ~~~~~vi~yc---~~g~~s~~~~~~l~~~G~~~v~~l   87 (100)
T smart00450       54 DKDKPVVVYC---RSGNRSAKAAWLLRELGFKNVYLL   87 (100)
T ss_pred             CCCCEEEEEC---CCCCCHHHHHHHHHHCCCCCEEEE
T ss_conf             7998499987---999806999999998089887980


No 100
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=37.16  E-value=36  Score=16.94  Aligned_cols=34  Identities=15%  Similarity=0.087  Sum_probs=24.1

Q ss_pred             CEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf             7599992004573889999999997899789999
Q gi|254780309|r   18 LKILLIDDVYTTGATAKCAAIALKKAGAMTVSIL   51 (59)
Q Consensus        18 k~vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~   51 (59)
                      -.=+||||++-.+.-+..+.+.|.....--|.+-
T Consensus        85 G~nvIvD~v~~~~~~l~d~~~~L~g~~v~~VGV~  118 (175)
T cd00227          85 GANVIADDVFLGRAALQDCWRSFVGLDVLWVGVR  118 (175)
T ss_pred             CCCEEEEEEECCCHHHHHHHHHHCCCCEEEEEEE
T ss_conf             9988986312380889999998579927999987


No 101
>cd01534 4RHOD_Repeat_3 Member of the Rhodanese Homology Domain superfamily, repeat 3. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 3rd repeat which does not contain the putative catalytic Cys residue.
Probab=36.98  E-value=42  Score=16.57  Aligned_cols=33  Identities=39%  Similarity=0.519  Sum_probs=28.1

Q ss_pred             CCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf             2897599992004573889999999997899789999
Q gi|254780309|r   15 VAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSIL   51 (59)
Q Consensus        15 i~gk~vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~   51 (59)
                      .++++|++++.   +|.-...++..|++.|- +|+.+
T Consensus        54 ~k~~~ivl~C~---~G~RS~~AA~~L~~~G~-~v~~L   86 (95)
T cd01534          54 VRGARIVLADD---DGVRADMTASWLAQMGW-EVYVL   86 (95)
T ss_pred             CCCCEEEEECC---CCCCHHHHHHHHHHCCC-CEEEE
T ss_conf             68983999859---99879999999998699-76995


No 102
>PRK09620 hypothetical protein; Provisional
Probab=35.43  E-value=45  Score=16.43  Aligned_cols=37  Identities=27%  Similarity=0.411  Sum_probs=27.6

Q ss_pred             CCCCEEEE--------EEEC-----CCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf             28975999--------9200-----4573889999999997899789999
Q gi|254780309|r   15 VAGLKILL--------IDDV-----YTTGATAKCAAIALKKAGAMTVSIL   51 (59)
Q Consensus        15 i~gk~vli--------VDDi-----itTG~T~~~~~~~L~~~ga~~V~~~   51 (59)
                      ++||+|||        +|+|     ..||.+=.++++.+..+||....+.
T Consensus         1 L~GkkVLITaG~T~E~IDpVR~ItN~SSGkmG~aiA~~a~~~GA~Vtli~   50 (229)
T PRK09620          1 MKGKKVLITSGGCLEKWDQVRGHTNMAKGTIGRIIAEELISKGAHVIYLH   50 (229)
T ss_pred             CCCCEEEEECCCCCCCCCCCCEECCCCCHHHHHHHHHHHHHCCCEEEEEE
T ss_conf             99989999588875666884562776823999999999997799799994


No 103
>TIGR01035 hemA glutamyl-tRNA reductase; InterPro: IPR000343   Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway . The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including vitamin B12, haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin .   The first stage in tetrapyrrole synthesis is the synthesis of 5-aminoaevulinic acid ALA via two possible routes: (1) condensation of succinyl CoA and glycine (C4 pathway) using ALA synthase (2.3.1.37 from EC), or (2) decarboxylation of glutamate (C5 pathway) via three different enzymes, glutamyl-tRNA synthetase (6.1.1.17 from EC) to charge a tRNA with glutamate, glutamyl-tRNA reductase (1.2.1.70 from EC) to reduce glutamyl-tRNA to glutamate-1-semialdehyde (GSA), and GSA aminotransferase (5.4.3.8 from EC) to catalyse a transamination reaction to produce ALA.   The second stage is to convert ALA to uroporphyrinogen III, the first macrocyclic tetrapyrrolic structure in the pathway. This is achieved by the action of three enzymes in one common pathway: porphobilinogen (PBG) synthase (or ALA dehydratase, 4.2.1.24 from EC) to condense two ALA molecules to generate porphobilinogen; hydroxymethylbilane synthase (or PBG deaminase, 2.5.1.61 from EC) to polymerise four PBG molecules into preuroporphyrinogen (tetrapyrrole structure); and uroporphyrinogen III synthase (4.2.1.75 from EC) to link two pyrrole units together (rings A and D) to yield uroporphyrinogen III.   Uroporphyrinogen III is the first branch point of the pathway. To synthesise cobalamin (vitamin B12), sirohaem, and coenzyme F430, uroporphyrinogen III needs to be converted into precorrin-2 by the action of uroporphyrinogen III methyltransferase (2.1.1.107 from EC). To synthesise haem and chlorophyll, uroporphyrinogen III needs to be decarboxylated into coproporphyrinogen III by the action of uroporphyrinogen III decarboxylase (4.1.1.37 from EC) .   This entry represents glutamyl-tRNA reductase (1.2.1.70 from EC), which reduces glutamyl-tRNA to glutamate-1-semialdehyde during the first stage of tetrapyrrole biosynthesis by the C5 pathway , . This enzyme required NADPH as a coenzyme.; GO: 0008883 glutamyl-tRNA reductase activity, 0050661 NADP binding, 0033014 tetrapyrrole biosynthetic process.
Probab=34.45  E-value=47  Score=16.34  Aligned_cols=40  Identities=28%  Similarity=0.372  Sum_probs=33.3

Q ss_pred             CCHHHHC--CCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf             5102100--2897599992004573889999999997899789999
Q gi|254780309|r    8 PQYVSKH--VAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSIL   51 (59)
Q Consensus         8 ~~~~~~~--i~gk~vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~   51 (59)
                      .+..-.+  ++++++|||-    =|-+..-++++|.+.|..+|.++
T Consensus       174 A~~ifG~erL~~~~~LliG----AGeMg~Lva~~L~~~~v~~~~i~  215 (436)
T TIGR01035       174 AEKIFGSERLKGKKVLLIG----AGEMGELVAKHLREKGVGKVLIA  215 (436)
T ss_pred             HHHHHCCCCCCCCEEEEEE----CCHHHHHHHHHHHHCCCCEEEEE
T ss_conf             9987256211664189982----74579999999964895289885


No 104
>cd01529 4RHOD_Repeats Member of the Rhodanese Homology Domain superfamily. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. Only the second and most of the fourth repeats contain the putative catalytic Cys residue. This CD aligns the 1st , 2nd, 3rd, and 4th repeats.
Probab=34.32  E-value=47  Score=16.33  Aligned_cols=33  Identities=24%  Similarity=0.244  Sum_probs=28.5

Q ss_pred             CCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf             897599992004573889999999997899789999
Q gi|254780309|r   16 AGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSIL   51 (59)
Q Consensus        16 ~gk~vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~   51 (59)
                      ++++|+++.   .+|.....+++.|.+.|-+.|+.+
T Consensus        55 ~~~~ivv~C---~~G~Rs~~Aa~~L~~~G~~~V~~L   87 (96)
T cd01529          55 RATRYVLTC---DGSLLARFAAQELLALGGKPVALL   87 (96)
T ss_pred             CCCEEEEEC---CCCCHHHHHHHHHHHCCCCCEEEE
T ss_conf             999799986---998469999999998589880990


No 105
>cd01518 RHOD_YceA Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YceA, Bacillus subtilis YbfQ, and similar uncharacterized proteins.
Probab=34.21  E-value=47  Score=16.32  Aligned_cols=34  Identities=32%  Similarity=0.384  Sum_probs=29.8

Q ss_pred             CCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf             2897599992004573889999999997899789999
Q gi|254780309|r   15 VAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSIL   51 (59)
Q Consensus        15 i~gk~vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~   51 (59)
                      -++|+|++.   ..+|.--..+++.|++.|-+.|+.+
T Consensus        59 ~k~k~ivvy---C~~G~RS~~Aa~~L~~~Gf~~V~~L   92 (101)
T cd01518          59 LKGKKVLMY---CTGGIRCEKASAYLKERGFKNVYQL   92 (101)
T ss_pred             CCCCEEEEE---CCCCHHHHHHHHHHHHCCCCCEEEE
T ss_conf             438769998---5998279999999998498706896


No 106
>PRK01641 leuD isopropylmalate isomerase small subunit; Provisional
Probab=33.17  E-value=49  Score=16.22  Aligned_cols=42  Identities=26%  Similarity=0.350  Sum_probs=36.7

Q ss_pred             HCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEEE
Q ss_conf             002897599992004573889999999997899789999998
Q gi|254780309|r   13 KHVAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILTFS   54 (59)
Q Consensus        13 ~~i~gk~vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~~la   54 (59)
                      +..++..|||..+-.-.|++=++|.-.|+..|-+.|..-++|
T Consensus        63 ~~~~~a~ILvag~NFGCGSSREhAvwAL~d~Gir~VIA~SFa  104 (201)
T PRK01641         63 PRYQGASILLAGENFGCGSSREHAPWALADYGFRVVIAPSFA  104 (201)
T ss_pred             CCCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCEEEECHHH
T ss_conf             566898189967876777508899999998599899972599


No 107
>cd01447 Polysulfide_ST Polysulfide-sulfurtransferase - Rhodanese Homology Domain. This domain is believed to serve as a polysulfide binding and transferase domain in anaerobic gram-negative bacteria, functioning in oxidative phosphorylation with polysulfide-sulfur as a terminal electron acceptor. The active site contains the same conserved cysteine that is the catalytic residue in other Rhodanese Homology Domain proteins.
Probab=32.97  E-value=49  Score=16.20  Aligned_cols=33  Identities=15%  Similarity=0.174  Sum_probs=28.2

Q ss_pred             CCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf             897599992004573889999999997899789999
Q gi|254780309|r   16 AGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSIL   51 (59)
Q Consensus        16 ~gk~vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~   51 (59)
                      ++|+|++   +..+|.....+++.|++.|-.+|+.+
T Consensus        60 ~~~~iv~---~C~~G~RS~~aa~~L~~~Gy~~v~~l   92 (103)
T cd01447          60 EDKPFVF---YCASGWRSALAGKTLQDMGLKPVYNI   92 (103)
T ss_pred             CCCEEEE---ECCCCCHHHHHHHHHHHCCCCCEEEC
T ss_conf             8887999---86998059999999998598443884


No 108
>TIGR01139 cysK cysteine synthase A; InterPro: IPR005859    This model discriminates cysteine synthase A (CysK) and cysteine synthase B (CysM) from cystathionine beta-synthase, a protein found primarily in eukaryotes and carrying a C-terminal CBS domain lacking from this protein. Bacterial proteins lacking the CBS domain but otherwise showing resemblance to cystathionine beta-synthases and considerable phylogenetic distance from known cysteine synthases were excluded.    Cysteine synthase (O-acetylserine (thiol)-lyase, 2.5.1.47 from EC) is the enzyme responsible for the formation of cysteine from O-acetyl-serine and hydrogen sulphide with the concomitant release of acetic acid. In bacteria such two forms of the enzyme are known (genes cysK and cysM). CysK differs from CysM in that it can also use sulphide instead of thiosulphate, to produce cysteine instead of cysteine thiosulphonate. ; GO: 0004124 cysteine synthase activity, 0006535 cysteine biosynthetic process from serine.
Probab=32.96  E-value=49  Score=16.23  Aligned_cols=28  Identities=21%  Similarity=0.209  Sum_probs=21.9

Q ss_pred             CCCCCHHHHHHHHHHHHCCC--CEEEEEEE
Q ss_conf             04573889999999997899--78999999
Q gi|254780309|r   26 VYTTGATAKCAAIALKKAGA--MTVSILTF   53 (59)
Q Consensus        26 iitTG~T~~~~~~~L~~~ga--~~V~~~~l   53 (59)
                      =+=||.|++=+.++||+..+  ++|.+.+.
T Consensus       174 G~GTGGTITGvG~~LK~~~pkG~~~~~~AV  203 (312)
T TIGR01139       174 GVGTGGTITGVGEVLKEKKPKGKDIKIVAV  203 (312)
T ss_pred             EECCCCHHHHHHHHHHCCCCCCCEEEEEEE
T ss_conf             323685154789987400789955899987


No 109
>PRK06921 hypothetical protein; Provisional
Probab=32.83  E-value=16  Score=18.86  Aligned_cols=33  Identities=15%  Similarity=0.153  Sum_probs=21.1

Q ss_pred             HHHHCCCCCEEEEEEEC--------CCCCHHHHHHHHHHHH
Q ss_conf             02100289759999200--------4573889999999997
Q gi|254780309|r   10 YVSKHVAGLKILLIDDV--------YTTGATAKCAAIALKK   42 (59)
Q Consensus        10 ~~~~~i~gk~vliVDDi--------itTG~T~~~~~~~L~~   42 (59)
                      .....++..++||+||.        -.|-++....-..+..
T Consensus       169 ~~l~~~~~~dlLIIDDLfk~~~G~e~~te~~~~~lf~iIN~  209 (265)
T PRK06921        169 AKLNRMKKVEVLFIDDLFKPVNGKPRATEWQIEQTYSVVNY  209 (265)
T ss_pred             HHHHHHHCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf             99998632999998221223479878988999999999999


No 110
>TIGR01136 cysKM cysteine synthases; InterPro: IPR005856    This model discriminates cysteine synthases (both CysK and CysM) from cystathionine beta-synthase, a protein found primarily in eukaryotes and carrying a C-terminal CBS domain lacking from this protein. Bacterial proteins lacking the CBS domain but otherwise showing resemblance to cystathionine beta-synthases and considerable phylogenetic distance from known cysteine synthases were excluded.    Cysteine synthase (O-acetylserine (thiol)-lyase) is the enzyme responsible for the formation of cysteine from O-acetyl-serine and hydrogen sulphide with the concomitant release of acetic acid. In bacteria such two forms of the enzyme are known (genes cysK and cysM). CysM differs from CysK in that it can also use thiosulphate instead of sulphide, to produce cysteine thiosulphonate instead of cysteine. ; GO: 0004124 cysteine synthase activity, 0006535 cysteine biosynthetic process from serine.
Probab=31.62  E-value=48  Score=16.25  Aligned_cols=28  Identities=21%  Similarity=0.281  Sum_probs=21.0

Q ss_pred             CCCCHHHHHHHHHHHHCCC--CEEEEEEEE
Q ss_conf             4573889999999997899--789999998
Q gi|254780309|r   27 YTTGATAKCAAIALKKAGA--MTVSILTFS   54 (59)
Q Consensus        27 itTG~T~~~~~~~L~~~ga--~~V~~~~la   54 (59)
                      +=||.|+.=..++||+..+  +.|.+..+=
T Consensus       176 ~GTGGTItGvgr~LK~~~pkG~~i~i~avE  205 (315)
T TIGR01136       176 VGTGGTITGVGRVLKEQNPKGKNIQIVAVE  205 (315)
T ss_pred             CCCCCCHHHHHHHHHHHCCCCCEEEEEEEE
T ss_conf             156751116898986326899617999975


No 111
>PRK11749 putative oxidoreductase; Provisional
Probab=30.42  E-value=55  Score=15.96  Aligned_cols=35  Identities=34%  Similarity=0.433  Sum_probs=29.8

Q ss_pred             CCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf             028975999920045738899999999978997899999
Q gi|254780309|r   14 HVAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILT   52 (59)
Q Consensus        14 ~i~gk~vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~~   52 (59)
                      ...||+|++|-    .|.|...++..+...||++|+++.
T Consensus       273 ~~~Gk~VvVIG----gGnvA~D~Arta~r~GA~~V~vv~  307 (460)
T PRK11749        273 IAVGKRVVVIG----GGNTAMDAARTAKRLGAESVTIVY  307 (460)
T ss_pred             CCCCCEEEEEC----CCHHHHHHHHHHHHCCCCEEEEEC
T ss_conf             54487489989----846699989999982898463300


No 112
>pfam07931 CPT Chloramphenicol phosphotransferase-like protein. The members of this family are all similar to chloramphenicol 3-O phosphotransferase (CPT) expressed by Streptomyces venezuelae. Chloramphenicol (Cm) is a metabolite produced by this bacterium that can inhibit ribosomal peptidyl transferase activity and therefore protein production. By transferring a phosphate group to the C-3 hydroxyl group of Cm, CPT inactivates this potentially lethal metabolite.
Probab=29.95  E-value=56  Score=15.92  Aligned_cols=33  Identities=18%  Similarity=0.194  Sum_probs=21.0

Q ss_pred             CEEEEEEECCCCCHHHHHHH-HHHHHCCCCEEEE
Q ss_conf             75999920045738899999-9999789978999
Q gi|254780309|r   18 LKILLIDDVYTTGATAKCAA-IALKKAGAMTVSI   50 (59)
Q Consensus        18 k~vliVDDiitTG~T~~~~~-~~L~~~ga~~V~~   50 (59)
                      -.=+||||++-.+..+..+. +.|.....--|.+
T Consensus        83 G~nvIvD~v~~~~~~l~d~~~~~L~g~~v~~VGV  116 (174)
T pfam07931        83 GNNVIVDDVILSGEWLQDCLQRLLSGLDVLFVGV  116 (174)
T ss_pred             CCCEEEEECCCCCHHHHHHHHHHHCCCCEEEEEE
T ss_conf             9998996546693789999999858981799998


No 113
>cd00404 Aconitase_swivel Aconitase swivel domain. Aconitase (aconitate hydratase) catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. This is the aconitase swivel domain, which undergoes swivelling conformational change in the enzyme mechanism. The aconitase family contains the following proteins: - Iron-responsive  element binding protein (IRE-BP). IRE-BP is a cytosolic protein that binds to iron-responsive elements (IREs). IREs are stem-loop structures found in the 5'UTR of ferritin, and delta aminolevulinic acid synthase mRNAs, and in the 3'UTR of transferrin receptor mRNA. IRE-BP also express aconitase activity. - 3-isopropylmalate dehydratase (isopropylmalate isomerase), the enzyme that catalyzes the second step in the biosynthesis of leucine. - Homoaconitase (homoaconitate hydratase), an enzyme that participates in the alpha-aminoadipate pathway of lysine biosynthesis and that converts cis-homoaconitate into homoisocitric acid.
Probab=29.85  E-value=48  Score=16.27  Aligned_cols=41  Identities=32%  Similarity=0.488  Sum_probs=35.1

Q ss_pred             CCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEEEE
Q ss_conf             28975999920045738899999999978997899999983
Q gi|254780309|r   15 VAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILTFSR   55 (59)
Q Consensus        15 i~gk~vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~~lar   55 (59)
                      -.|..|++-+.-+-+|++-.++...++..|.+.|..-.+||
T Consensus        13 ~ag~~iiVag~nfG~GSSRE~A~~~l~~~Gi~~ViA~Sfar   53 (88)
T cd00404          13 PAGPGVVIGDENYGTGSSREHAALELRLLGGRAVIAKSFAR   53 (88)
T ss_pred             CCCCEEEEECCCCCCCCCHHHHHHHHHHCCCEEEEEHHHHH
T ss_conf             48987999667547785188999999984961999732999


No 114
>pfam03192 DUF257 Pyrococcus protein of unknown function, DUF257.
Probab=29.02  E-value=50  Score=16.16  Aligned_cols=24  Identities=25%  Similarity=0.272  Sum_probs=17.7

Q ss_pred             EEEEEEECCCCCHHHHHHHHHHHHCCC
Q ss_conf             599992004573889999999997899
Q gi|254780309|r   19 KILLIDDVYTTGATAKCAAIALKKAGA   45 (59)
Q Consensus        19 ~vliVDDiitTG~T~~~~~~~L~~~ga   45 (59)
                      --++|||+.||+..+.   ..|+-.|.
T Consensus        40 ~~ilI~DilDtl~i~~---~~lel~G~   63 (210)
T pfam03192        40 IPIVIDDILDTLPIYR---KHLELLGI   63 (210)
T ss_pred             CCEEEEECCCCHHHHH---HHHHHCCC
T ss_conf             9389995456589999---87997187


No 115
>TIGR02668 moaA_archaeal probable molybdenum cofactor biosynthesis protein A; InterPro: IPR013485    This entry consists of archaeal proteins which are predicted to be functionally equivalent to MoaA (molybdenum cofactor biosynthesis protein A) from bacteria (see IPR013483 from INTERPRO).; GO: 0046872 metal ion binding, 0006777 Mo-molybdopterin cofactor biosynthetic process.
Probab=28.70  E-value=56  Score=15.91  Aligned_cols=25  Identities=32%  Similarity=0.315  Sum_probs=21.9

Q ss_pred             CCCCCHHHHHHHHHHHHCCCCEEEE
Q ss_conf             0457388999999999789978999
Q gi|254780309|r   26 VYTTGATAKCAAIALKKAGAMTVSI   50 (59)
Q Consensus        26 iitTG~T~~~~~~~L~~~ga~~V~~   50 (59)
                      +.|-|..|...++.|+++|=..|.+
T Consensus        96 mTTNG~LL~~~A~~Lk~AGLdRVNV  120 (324)
T TIGR02668        96 MTTNGILLEKLAKKLKEAGLDRVNV  120 (324)
T ss_pred             CCCCHHHHHHHHHHHHHHCCCEEEE
T ss_conf             0303144898999999828561312


No 116
>cd01532 4RHOD_Repeat_1 Member of the Rhodanese Homology Domain superfamily, repeat 1. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 1st repeat which does not contain the putative catalytic Cys residue.
Probab=28.25  E-value=60  Score=15.75  Aligned_cols=35  Identities=23%  Similarity=0.175  Sum_probs=25.9

Q ss_pred             CCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf             897599992004573889999999997899789999
Q gi|254780309|r   16 AGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSIL   51 (59)
Q Consensus        16 ~gk~vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~   51 (59)
                      ++++|+++++-=..| -...+++.|.+.|=..|+.+
T Consensus        49 kd~~Ivvyc~~g~~~-~s~~Aa~~L~~~Gy~~V~~L   83 (92)
T cd01532          49 RDTPIVVYGEGGGED-LAPRAARRLSELGYTDVALL   83 (92)
T ss_pred             CCCEEEEEECCCCCH-HHHHHHHHHHHCCCCCEEEC
T ss_conf             998299996999962-99999999998699686885


No 117
>cd01644 RT_pepA17 RT_pepA17: Reverse transcriptase (RTs) in retrotransposons. This subfamily represents the RT domain of a multifunctional enzyme. C-terminal to the RT domain is a domain homologous to aspartic proteinases (corresponding to Merops family A17) encoded by retrotransposons and retroviruses. RT catalyzes DNA replication from an RNA template and is responsible for the replication of retroelements.
Probab=27.92  E-value=32  Score=17.23  Aligned_cols=24  Identities=21%  Similarity=0.296  Sum_probs=18.7

Q ss_pred             EEEEEEECCCCCHHHHHHHHHHHH
Q ss_conf             599992004573889999999997
Q gi|254780309|r   19 KILLIDDVYTTGATAKCAAIALKK   42 (59)
Q Consensus        19 ~vliVDDiitTG~T~~~~~~~L~~   42 (59)
                      +-.-|||+++++.|..++.+...+
T Consensus       137 ~~~YVDD~l~s~~t~eea~~l~~~  160 (213)
T cd01644         137 RNFYVDDILVSTDTLNEAVNVAKR  160 (213)
T ss_pred             HCCCCCCCCCCCCCHHHHHHHHHH
T ss_conf             653121411376999999999999


No 118
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase; InterPro: IPR010110   This entry represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.; GO: 0004764 shikimate 5-dehydrogenase activity, 0005737 cytoplasm.
Probab=27.52  E-value=62  Score=15.67  Aligned_cols=27  Identities=26%  Similarity=0.442  Sum_probs=24.0

Q ss_pred             CCCCCHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf             045738899999999978997899999
Q gi|254780309|r   26 VYTTGATAKCAAIALKKAGAMTVSILT   52 (59)
Q Consensus        26 iitTG~T~~~~~~~L~~~ga~~V~~~~   52 (59)
                      |+=+|.|..+|.-.|.+.|++.|+++.
T Consensus       135 viGaGGtsrAA~yaL~sLG~~~I~~in  161 (291)
T TIGR01809       135 VIGAGGTSRAAVYALASLGVKDIYVIN  161 (291)
T ss_pred             EECCCCHHHHHHHHHHHCCCCEEEEEE
T ss_conf             883872148999999866997069973


No 119
>PRK00162 glpE thiosulfate sulfurtransferase; Validated
Probab=27.36  E-value=62  Score=15.66  Aligned_cols=33  Identities=18%  Similarity=0.199  Sum_probs=28.6

Q ss_pred             CCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf             897599992004573889999999997899789999
Q gi|254780309|r   16 AGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSIL   51 (59)
Q Consensus        16 ~gk~vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~   51 (59)
                      .+++++++   ..+|..-..+++.|.+.|-+.|+-+
T Consensus        57 ~d~~ivv~---C~~G~rS~~aa~~L~~~Gf~~V~~l   89 (104)
T PRK00162         57 FDTPVMVM---CYHGNSSQGAAQYLLQQGFDVVYSI   89 (104)
T ss_pred             CCCCEEEE---ECCCHHHHHHHHHHHHCCCCCEEEE
T ss_conf             88988999---5988189999999997376438981


No 120
>cd01527 RHOD_YgaP Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YgaP, and similar uncharacterized putative rhodanese-related sulfurtransferases.
Probab=26.39  E-value=65  Score=15.56  Aligned_cols=34  Identities=21%  Similarity=0.195  Sum_probs=28.5

Q ss_pred             CCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf             2897599992004573889999999997899789999
Q gi|254780309|r   15 VAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSIL   51 (59)
Q Consensus        15 i~gk~vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~   51 (59)
                      -++++|++   +..+|.....+++.|.+.|-..|+.+
T Consensus        52 ~~~~~vv~---~C~~G~RS~~aa~~L~~~g~~~v~~l   85 (99)
T cd01527          52 VGANAIIF---HCRSGMRTQQNAERLAAISAGEAYVL   85 (99)
T ss_pred             CCCCEEEE---ECCCCHHHHHHHHHHHHCCCCCEEEE
T ss_conf             78986999---87997369999999998599888995


No 121
>PRK06975 bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed
Probab=25.07  E-value=69  Score=15.42  Aligned_cols=44  Identities=23%  Similarity=0.387  Sum_probs=35.9

Q ss_pred             HHCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEEEEECCC
Q ss_conf             100289759999200457388999999999789978999999830689
Q gi|254780309|r   12 SKHVAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILTFSRSLKD   59 (59)
Q Consensus        12 ~~~i~gk~vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~~lar~~~~   59 (59)
                      ..++.||.|+|+=-.  .|  =...++.|+++||..-++-|.-|+.|+
T Consensus       134 lq~v~gkrVLIvRG~--GG--RElLaetL~~RGA~V~y~e~YrR~~P~  177 (653)
T PRK06975        134 AAALAGKRVLIVRGD--GG--REWLAERLREAGAEVELVEAYRRVVPE  177 (653)
T ss_pred             HHHCCCCEEEEEECC--CC--HHHHHHHHHHCCCEEEEEEEEEECCCC
T ss_conf             765349979998278--53--799999999879805699786303989


No 122
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=24.79  E-value=27  Score=17.63  Aligned_cols=38  Identities=21%  Similarity=0.325  Sum_probs=22.2

Q ss_pred             HHHHCCCCCEEEEEEECC--C-CCHHHHH---HHHHHHHCCCCE
Q ss_conf             021002897599992004--5-7388999---999999789978
Q gi|254780309|r   10 YVSKHVAGLKILLIDDVY--T-TGATAKC---AAIALKKAGAMT   47 (59)
Q Consensus        10 ~~~~~i~gk~vliVDDii--t-TG~T~~~---~~~~L~~~ga~~   47 (59)
                      .++...++-+|||||||=  . -..|-.+   ..+.|.+.|-.-
T Consensus       195 ~Fr~~yr~~DvLLIDDIQfl~gK~~tqeEff~tfN~L~~~~KQI  238 (455)
T PRK12422        195 RFRSFYRNVDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLI  238 (455)
T ss_pred             HHHHHHHCCCEEEEEHHHHHHCCHHHHHHHHHHHHHHHHCCCEE
T ss_conf             99999963887763147887284889999999999999859969


No 123
>COG0066 LeuD 3-isopropylmalate dehydratase small subunit [Amino acid transport and metabolism]
Probab=24.78  E-value=60  Score=15.76  Aligned_cols=42  Identities=26%  Similarity=0.344  Sum_probs=37.1

Q ss_pred             CCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEEEE
Q ss_conf             028975999920045738899999999978997899999983
Q gi|254780309|r   14 HVAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILTFSR   55 (59)
Q Consensus        14 ~i~gk~vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~~lar   55 (59)
                      ..++-+||+.-+-.-.|++=++|.-.|+..|.+.|..=++|+
T Consensus        59 ~yq~g~IlVag~NFGcGSSREHApwALk~~Gi~~VIA~SFAd  100 (191)
T COG0066          59 PYQGGDILVAGENFGCGSSREHAPWALKDYGIRAVIAPSFAD  100 (191)
T ss_pred             CCCCCCEEEECCCCCCCCCHHHHHHHHHHCCEEEEEECCHHH
T ss_conf             667864899668877885277899999975924999362999


No 124
>cd01579 AcnA_Bact_Swivel Bacterial Aconitase-like swivel domain. Aconitase (aconitate hydratase or citrate hydrolyase) catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle.  Cis-aconitate is formed as an intermediate product during the course of the reaction. This is the aconitase-like swivel domain, which is believed to undergo swivelling conformational change in the enzyme mechanism. This distinct subfamily is found only in bacteria and archea. Its exact characteristics are not known.
Probab=24.64  E-value=51  Score=16.13  Aligned_cols=40  Identities=28%  Similarity=0.366  Sum_probs=34.2

Q ss_pred             CCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEEEE
Q ss_conf             8975999920045738899999999978997899999983
Q gi|254780309|r   16 AGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILTFSR   55 (59)
Q Consensus        16 ~gk~vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~~lar   55 (59)
                      .+..|++-.+-+=+|++=.++...|+..|.+.|..-.++|
T Consensus        47 ~~~~IiVaG~NFG~GSSRE~A~~al~~~Gi~aVIA~SFar   86 (121)
T cd01579          47 AGPGFIVGGENYGQGSSREHAALAPMYLGVRAVLAKSFAR   86 (121)
T ss_pred             CCCEEEEECCCCCCCCCHHHHHHHHHHCCCEEEEEHHHHH
T ss_conf             8981999667567897289999999983945999758999


No 125
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=24.60  E-value=70  Score=15.37  Aligned_cols=39  Identities=21%  Similarity=0.325  Sum_probs=32.1

Q ss_pred             CHHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf             1021002897599992004573889999999997899789999
Q gi|254780309|r    9 QYVSKHVAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSIL   51 (59)
Q Consensus         9 ~~~~~~i~gk~vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~   51 (59)
                      +....+++++++++|-    -|-+..-+++.|.++|...|+++
T Consensus       170 ~~~~~~L~~~~vlvIG----AGem~~lva~~L~~~g~~~i~Ia  208 (414)
T COG0373         170 KRIFGSLKDKKVLVIG----AGEMGELVAKHLAEKGVKKITIA  208 (414)
T ss_pred             HHHHCCCCCCEEEEEC----CCHHHHHHHHHHHHCCCCEEEEE
T ss_conf             9983654467699986----51899999999985898779997


No 126
>COG1204 Superfamily II helicase [General function prediction only]
Probab=23.91  E-value=73  Score=15.30  Aligned_cols=43  Identities=16%  Similarity=0.434  Sum_probs=35.4

Q ss_pred             CCCEEEEEEECC-----CCCHHHHHHHHHHHHCCCCEEEEEEEEEECCC
Q ss_conf             897599992004-----57388999999999789978999999830689
Q gi|254780309|r   16 AGLKILLIDDVY-----TTGATAKCAAIALKKAGAMTVSILTFSRSLKD   59 (59)
Q Consensus        16 ~gk~vliVDDii-----tTG~T~~~~~~~L~~~ga~~V~~~~lar~~~~   59 (59)
                      ..=.+++||+|-     +.|.|+..+...++..+.. +.++.|..|++|
T Consensus       145 ~~V~lvViDEiH~l~d~~RG~~lE~iv~r~~~~~~~-~rivgLSATlpN  192 (766)
T COG1204         145 EEVDLVVIDEIHLLGDRTRGPVLESIVARMRRLNEL-IRIVGLSATLPN  192 (766)
T ss_pred             HCCCEEEEEEEEECCCCCCCCEEHHHHHHHHHHCCC-EEEEEEEEECCC
T ss_conf             401689994210148756586402279888852755-179887311688


No 127
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=23.01  E-value=76  Score=15.20  Aligned_cols=35  Identities=26%  Similarity=0.550  Sum_probs=29.9

Q ss_pred             CCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf             028975999920045738899999999978997899999
Q gi|254780309|r   14 HVAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILT   52 (59)
Q Consensus        14 ~i~gk~vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~~   52 (59)
                      ..++|+++|+    =.|.+..+++-.|.+.|+++|+++.
T Consensus       119 ~~~~k~vlIl----GaGGaarai~~al~~~g~~~i~i~n  153 (275)
T PRK00258        119 DLKGKRILLL----GAGGAARAVILPLLELGVAEITIVN  153 (275)
T ss_pred             CCCCCEEEEE----CCCCHHHHHHHHHHHCCCCEEEEEE
T ss_conf             8568759998----8871079999999976999899995


No 128
>cd01524 RHOD_Pyr_redox Member of the Rhodanese Homology Domain superfamily. Included in this CD are the Lactococcus lactis NADH oxidase, Bacillus cereus NADH dehydrogenase, and Bacteroides thetaiotaomicron pyridine nucleotide-disulphide oxidoreductase, and similar rhodanese-like domains found C-terminal of the pyridine nucleotide-disulphide oxidoreductase (Pyr-redox) domain and the Pyr-redox dimerization domain.
Probab=22.69  E-value=77  Score=15.16  Aligned_cols=32  Identities=25%  Similarity=0.261  Sum_probs=26.0

Q ss_pred             CCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf             897599992004573889999999997899789999
Q gi|254780309|r   16 AGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSIL   51 (59)
Q Consensus        16 ~gk~vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~   51 (59)
                      +++++++   +..+|..-..+++.|++.|- +|+.+
T Consensus        50 k~~~ivv---~C~~G~rS~~aa~~L~~~G~-~v~~l   81 (90)
T cd01524          50 KDKEIIV---YCAVGLRGYIAARILTQNGF-KVKNL   81 (90)
T ss_pred             CCCEEEE---ECCCCCHHHHHHHHHHHCCC-CEEEE
T ss_conf             5870999---88998059999999998699-88996


No 129
>TIGR02281 DTGA conserved hypothetical protein TIGR02281; InterPro: IPR011969    This entry consists of proteins of unknown function, typically from 180 to 230 amino acids in length. This entry describes the well-conserved 121-residue C-terminal region. The poorly conserved, variable length N-terminal region usually contains a predicted transmembrane helix. .
Probab=22.47  E-value=46  Score=16.35  Aligned_cols=32  Identities=25%  Similarity=0.212  Sum_probs=22.4

Q ss_pred             CCEEEECCHHHHCCCCCEEEEEEECCCCCHHHHHHHHHH
Q ss_conf             760882510210028975999920045738899999999
Q gi|254780309|r    2 RNAFNVPQYVSKHVAGLKILLIDDVYTTGATAKCAAIAL   40 (59)
Q Consensus         2 ~gaf~i~~~~~~~i~gk~vliVDDiitTG~T~~~~~~~L   40 (59)
                      +|.|.+.-.    |.||.|   +=++|||+|.....+.=
T Consensus         9 ~GHF~~~~~----vNG~~v---~flvDTGAt~VaL~~~~   40 (121)
T TIGR02281         9 DGHFAATGR----VNGRAV---DFLVDTGATSVALNEED   40 (121)
T ss_pred             CCEEEEEEE----ECCEEE---EEEEECCCCEEECCHHH
T ss_conf             983899988----789498---89982587427818258


No 130
>cd01577 IPMI_Swivel Aconatase-like swivel domain of 3-isopropylmalate dehydratase and related uncharacterized proteins. 3-isopropylmalate dehydratase catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate 3-isopropylmalate. IPMI is involved in fungal and bacterial leucine biosynthesis and is also found in eukaryotes. This is the aconitase-like swivel domain, which is believed to undergo swivelling conformational change in the enzyme mechanism.
Probab=22.00  E-value=62  Score=15.67  Aligned_cols=38  Identities=29%  Similarity=0.393  Sum_probs=33.7

Q ss_pred             CEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEEEE
Q ss_conf             75999920045738899999999978997899999983
Q gi|254780309|r   18 LKILLIDDVYTTGATAKCAAIALKKAGAMTVSILTFSR   55 (59)
Q Consensus        18 k~vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~~lar   55 (59)
                      .+|++..+-.-+|++=.++...|+..|.+.|..-.+|+
T Consensus        18 ~~Ilvag~NFG~GSSREhA~~al~~~Gi~~VIa~SFa~   55 (91)
T cd01577          18 GDIIVAGKNFGCGSSREHAPWALKDAGIRAVIAESFAR   55 (91)
T ss_pred             CCEEEECCCCCCCCCHHHHHHHHHHCCCEEEEEHHHHH
T ss_conf             46899568657785289999999984954999723999


No 131
>TIGR01137 cysta_beta cystathionine beta-synthase; InterPro: IPR005857    This model discriminates cystathionine beta-synthase, a protein found primarily in eukaryotes and carrying a C-terminal CBS domain from cysteine synthases. Cysteine synthase (O-acetylserine (thiol)-lyase) is the enzyme responsible for the formation of cysteine from O-acetyl-serine and hydrogen sulphide with the concomitant release of acetic acid - the function of many of these enzymes is unproven.; GO: 0004122 cystathionine beta-synthase activity, 0019343 cysteine biosynthetic process via cystathionine, 0005737 cytoplasm.
Probab=21.80  E-value=69  Score=15.41  Aligned_cols=25  Identities=32%  Similarity=0.183  Sum_probs=17.7

Q ss_pred             CCCCCHHHHHHHHHHHHCCCCEEEE
Q ss_conf             0457388999999999789978999
Q gi|254780309|r   26 VYTTGATAKCAAIALKKAGAMTVSI   50 (59)
Q Consensus        26 iitTG~T~~~~~~~L~~~ga~~V~~   50 (59)
                      -+=||.|++-++++||+.....|.+
T Consensus       186 g~GTGGTItGi~ryLK~~~~~~~~i  210 (527)
T TIGR01137       186 GVGTGGTITGIARYLKDESNPKVRI  210 (527)
T ss_pred             CCCCCCHHHHHHHHHHHCCCCCEEE
T ss_conf             0578831554556543213893389


No 132
>TIGR01342 acon_putative aconitate hydratase, putative; InterPro: IPR006250   Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop , . Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) . Below is a description of some of the multi-functional activities associated with different aconitases.   Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway . The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA.    Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) , . As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated .   IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis . Although IRP2 is homologous to IRP1, IPR2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes . In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system.   Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica , . In S.enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress.   This entry represents a small family of proteins homologous and likely functionally equivalent to aconitase 1. Members are found, so far in the anaerobe Clostridium acetobutylicum, in the microaerophilic, early-branching bacterium Aquifex aeolicus, and in the halophilic archaeon Halobacterium sp. NRC-1. No member is experimentally characterised.   More information about these proteins can be found at Protein of the Month: Aconitase ..
Probab=21.76  E-value=31  Score=17.26  Aligned_cols=49  Identities=27%  Similarity=0.245  Sum_probs=35.8

Q ss_pred             ECCHHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHC-CCCEEEEEEEEE
Q ss_conf             2510210028975999920045738899999999978-997899999983
Q gi|254780309|r    7 VPQYVSKHVAGLKILLIDDVYTTGATAKCAAIALKKA-GAMTVSILTFSR   55 (59)
Q Consensus         7 i~~~~~~~i~gk~vliVDDiitTG~T~~~~~~~L~~~-ga~~V~~~~lar   55 (59)
                      ..+++..+++|-..|++.|-|||-.-+=+.++.|+-+ +...+.=++++|
T Consensus       463 ~~~PL~~~~~GE~~L~~~DNITTDHI~PA~~~IL~lRSNI~~~SEy~~~~  512 (658)
T TIGR01342       463 VKDPLGEDVRGEVLLKVEDNITTDHIIPATADILKLRSNIEALSEYVLSR  512 (658)
T ss_pred             CCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf             86868885210188997157652532566410110134578875575420


No 133
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=21.62  E-value=30  Score=17.35  Aligned_cols=39  Identities=21%  Similarity=0.170  Sum_probs=23.7

Q ss_pred             HHHHCCCCCEEEEEEECCCC---CH---HHHHHHHHHHHCCCCEE
Q ss_conf             02100289759999200457---38---89999999997899789
Q gi|254780309|r   10 YVSKHVAGLKILLIDDVYTT---GA---TAKCAAIALKKAGAMTV   48 (59)
Q Consensus        10 ~~~~~i~gk~vliVDDiitT---G~---T~~~~~~~L~~~ga~~V   48 (59)
                      .++...++-++||||||=-=   ..   -+-+..+.|.+.|-.-|
T Consensus       201 ~Fr~~yr~~DvLliDDiqfl~gk~~tqeeff~~fn~l~~~~kqiv  245 (447)
T PRK00149        201 EFKEKYRSVDVLLIDDIQFLAGKEKTQEEFFHTFNALHENNKQIV  245 (447)
T ss_pred             HHHHHHHCCCEEEECHHHHHHCCHHHHHHHHHHHHHHHHCCCEEE
T ss_conf             999999728854321488860557799999999999998499689


No 134
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=20.49  E-value=86  Score=14.90  Aligned_cols=35  Identities=31%  Similarity=0.644  Sum_probs=30.0

Q ss_pred             CCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf             028975999920045738899999999978997899999
Q gi|254780309|r   14 HVAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILT   52 (59)
Q Consensus        14 ~i~gk~vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~~   52 (59)
                      +++|++++|+    =.|.+..+++-.|.+.|+++|.++-
T Consensus       123 ~~~~~~vlil----GAGGAarAv~~aL~~~g~~~i~V~N  157 (283)
T COG0169         123 DVTGKRVLIL----GAGGAARAVAFALAEAGAKRITVVN  157 (283)
T ss_pred             CCCCCEEEEE----CCCHHHHHHHHHHHHCCCCEEEEEE
T ss_conf             6678889998----9768999999999986998799995


Done!