Query gi|254780309|ref|YP_003064722.1| comF family protein [Candidatus Liberibacter asiaticus str. psy62] Match_columns 59 No_of_seqs 104 out of 2972 Neff 6.1 Searched_HMMs 39220 Date Sun May 29 15:59:43 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780309.hhm -d /home/congqian_1/database/cdd/Cdd.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 PRK11595 gluconate periplasmic 99.7 6.6E-17 1.7E-21 112.8 6.6 53 1-57 175-227 (227) 2 COG1040 ComFC Predicted amidop 99.5 4E-14 1E-18 97.7 6.4 55 1-58 171-225 (225) 3 TIGR00201 comF comF family pro 99.4 1.7E-13 4.2E-18 94.4 1.7 54 1-55 153-207 (207) 4 TIGR01203 HGPRTase hypoxanthin 99.2 1.5E-11 3.9E-16 83.8 5.3 56 2-57 85-141 (183) 5 COG0634 Hpt Hypoxanthine-guani 99.1 1.2E-10 3.1E-15 78.9 6.7 56 2-57 78-133 (178) 6 PTZ00271 hypoxanthine-guanine 99.1 1.1E-10 2.9E-15 79.1 6.4 54 2-55 103-156 (211) 7 PRK09162 hypoxanthine-guanine 99.1 1.9E-10 4.9E-15 77.8 6.3 53 3-55 83-135 (181) 8 COG0462 PrsA Phosphoribosylpyr 99.1 3.5E-10 9E-15 76.4 6.3 49 10-58 207-255 (314) 9 PTZ00149 hypoxanthine phosphor 99.0 4.6E-10 1.2E-14 75.8 6.2 53 3-55 123-175 (231) 10 PRK03675 consensus 99.0 4.1E-10 1E-14 76.1 5.6 47 12-58 196-242 (279) 11 PRK06827 phosphoribosylpyropho 99.0 5.3E-10 1.4E-14 75.4 6.2 46 13-58 261-306 (381) 12 PTZ00145 phosphoribosylpyropho 99.0 4.2E-10 1.1E-14 76.0 5.6 48 11-58 333-380 (443) 13 PRK02812 ribose-phosphate pyro 99.0 4E-10 1E-14 76.1 5.0 48 11-58 224-271 (331) 14 PRK01506 consensus 99.0 6E-10 1.5E-14 75.2 5.3 47 12-58 212-258 (317) 15 PRK05259 consensus 99.0 5.9E-10 1.5E-14 75.2 5.1 47 12-58 204-250 (310) 16 PRK02269 ribose-phosphate pyro 99.0 6.3E-10 1.6E-14 75.1 5.2 47 12-58 212-258 (321) 17 PRK00553 ribose-phosphate pyro 99.0 5.8E-10 1.5E-14 75.3 5.0 47 12-58 221-267 (340) 18 PRK02270 consensus 99.0 6E-10 1.5E-14 75.2 5.0 47 12-58 209-255 (327) 19 PRK01132 consensus 99.0 6.2E-10 1.6E-14 75.1 5.1 46 13-58 199-244 (286) 20 PRK01999 consensus 99.0 7.2E-10 1.8E-14 74.7 5.3 48 11-58 206-253 (311) 21 PRK02458 ribose-phosphate pyro 99.0 7.7E-10 2E-14 74.6 5.4 47 12-58 213-259 (323) 22 PRK03092 ribose-phosphate pyro 99.0 7.8E-10 2E-14 74.5 5.1 48 11-58 195-242 (304) 23 PRK07199 phosphoribosylpyropho 99.0 9.7E-10 2.5E-14 74.1 5.6 47 12-58 206-252 (301) 24 PRK04923 ribose-phosphate pyro 99.0 8.1E-10 2.1E-14 74.5 5.2 48 11-58 211-258 (319) 25 PRK00934 ribose-phosphate pyro 99.0 9.6E-10 2.4E-14 74.1 5.5 46 13-58 200-245 (286) 26 PRK04117 consensus 99.0 9E-10 2.3E-14 74.2 5.2 48 11-58 205-252 (309) 27 PRK02039 consensus 99.0 9E-10 2.3E-14 74.2 5.1 48 11-58 208-255 (316) 28 PRK01259 ribose-phosphate pyro 99.0 9E-10 2.3E-14 74.2 5.1 47 12-58 203-249 (309) 29 PRK05038 consensus 99.0 9.1E-10 2.3E-14 74.2 4.9 48 11-58 207-254 (315) 30 PRK04554 consensus 99.0 9.5E-10 2.4E-14 74.1 5.0 48 11-58 209-256 (327) 31 pfam00156 Pribosyltran Phospho 98.9 4.9E-09 1.2E-13 70.3 6.4 45 10-54 79-123 (123) 32 PRK02277 orotate phosphoribosy 98.7 2E-08 5.2E-13 66.9 5.5 42 13-54 137-178 (201) 33 COG0034 PurF Glutamine phospho 98.6 4.5E-08 1.2E-12 65.0 4.6 49 10-58 341-389 (470) 34 COG0856 Orotate phosphoribosyl 98.6 1.3E-07 3.4E-12 62.5 6.2 50 3-55 130-179 (203) 35 PRK09246 amidophosphoribosyltr 98.6 6.9E-08 1.8E-12 64.0 4.7 48 11-58 352-399 (503) 36 PRK08525 amidophosphoribosyltr 98.5 8.8E-08 2.2E-12 63.5 4.5 49 10-58 333-381 (445) 37 PRK07631 amidophosphoribosyltr 98.5 8.9E-08 2.3E-12 63.5 4.5 48 10-57 341-388 (475) 38 PRK06781 amidophosphoribosyltr 98.5 9.2E-08 2.4E-12 63.4 4.6 48 11-58 342-389 (471) 39 PRK07349 amidophosphoribosyltr 98.5 9.7E-08 2.5E-12 63.2 4.4 48 10-57 365-412 (495) 40 TIGR01090 apt adenine phosphor 98.5 1.7E-07 4.5E-12 61.9 5.7 51 2-53 100-150 (175) 41 PRK08341 amidophosphoribosyltr 98.5 8.7E-08 2.2E-12 63.5 4.2 49 10-58 327-375 (442) 42 PRK07272 amidophosphoribosyltr 98.5 1.1E-07 2.7E-12 63.0 4.5 47 11-57 344-390 (484) 43 PRK05793 amidophosphoribosyltr 98.5 9.9E-08 2.5E-12 63.2 4.4 49 10-58 349-397 (472) 44 PRK09123 amidophosphoribosyltr 98.5 1.1E-07 2.7E-12 63.0 4.5 48 10-57 344-391 (480) 45 KOG1448 consensus 98.5 1.3E-07 3.3E-12 62.6 4.9 48 11-58 208-255 (316) 46 PRK06388 amidophosphoribosyltr 98.5 1.1E-07 2.8E-12 63.0 4.3 48 10-57 349-396 (474) 47 PRK07847 amidophosphoribosyltr 98.5 1.3E-07 3.3E-12 62.5 4.5 49 10-58 335-383 (489) 48 PRK05205 bifunctional pyrimidi 98.5 2.5E-07 6.4E-12 61.0 5.7 44 11-54 89-133 (176) 49 KOG0572 consensus 98.5 2E-07 5.2E-12 61.5 4.4 49 10-58 349-397 (474) 50 TIGR01134 purF amidophosphorib 98.4 2.2E-07 5.6E-12 61.3 4.4 46 10-55 353-398 (467) 51 KOG3367 consensus 98.4 4.6E-07 1.2E-11 59.6 4.8 48 7-54 115-162 (216) 52 PRK07322 adenine phosphoribosy 98.3 9.4E-07 2.4E-11 57.9 5.7 44 11-54 114-157 (178) 53 COG2236 Predicted phosphoribos 98.3 5.3E-07 1.3E-11 59.3 2.9 47 7-53 76-123 (192) 54 PRK02304 adenine phosphoribosy 98.2 2.6E-06 6.5E-11 55.6 5.4 40 15-54 111-150 (174) 55 PRK13811 orotate phosphoribosy 98.2 2.8E-06 7.1E-11 55.4 5.4 41 14-54 101-141 (170) 56 PRK00455 pyrE orotate phosphor 98.2 2.6E-06 6.6E-11 55.5 4.8 41 15-55 109-149 (200) 57 COG0461 PyrE Orotate phosphori 98.2 4.5E-06 1.1E-10 54.2 5.8 40 15-54 110-149 (201) 58 TIGR01367 pyrE_Therm orotate p 98.2 3.6E-06 9.1E-11 54.8 5.2 51 3-54 98-148 (205) 59 PRK13812 orotate phosphoribosy 98.2 3.8E-06 9.7E-11 54.6 5.3 39 16-54 106-144 (174) 60 TIGR01091 upp uracil phosphori 98.1 5.3E-06 1.3E-10 53.9 5.6 50 8-57 119-168 (213) 61 PRK13809 orotate phosphoribosy 98.1 5.5E-06 1.4E-10 53.8 5.5 40 15-54 116-155 (206) 62 PRK13810 orotate phosphoribosy 98.1 5.1E-06 1.3E-10 54.0 5.3 40 15-54 120-159 (187) 63 PRK12560 adenine phosphoribosy 98.1 7.1E-06 1.8E-10 53.2 5.6 39 16-54 110-148 (184) 64 PRK05500 bifunctional orotidin 98.1 8E-06 2E-10 52.9 5.7 40 15-54 391-430 (478) 65 TIGR00336 pyrE orotate phospho 98.1 7.5E-06 1.9E-10 53.0 5.3 41 14-54 114-154 (187) 66 COG0503 Apt Adenine/guanine ph 98.0 1.3E-05 3.3E-10 51.8 6.2 41 16-56 115-155 (179) 67 PRK06031 phosphoribosyltransfe 98.0 1.5E-05 3.7E-10 51.5 5.6 49 5-53 142-190 (233) 68 COG1926 Predicted phosphoribos 98.0 1.2E-05 3.2E-10 51.9 5.0 42 12-53 119-160 (220) 69 PRK00129 upp uracil phosphorib 97.9 2.4E-05 6.1E-10 50.3 5.3 48 9-56 115-162 (208) 70 TIGR01251 ribP_PPkin ribose-ph 97.8 4.4E-05 1.1E-09 48.9 4.9 49 10-58 205-253 (316) 71 COG0035 Upp Uracil phosphoribo 97.7 6.1E-05 1.6E-09 48.1 5.4 48 10-57 117-165 (210) 72 KOG1712 consensus 97.6 9.5E-05 2.4E-09 47.1 5.2 39 16-54 121-159 (183) 73 PRK08558 adenine phosphoribosy 97.5 0.00018 4.7E-09 45.6 5.0 40 16-55 175-214 (238) 74 PRK09177 xanthine-guanine phos 97.5 8.9E-05 2.3E-09 47.2 3.3 35 14-53 81-115 (156) 75 COG2065 PyrR Pyrimidine operon 97.5 0.00024 6.1E-09 44.9 5.3 44 11-54 90-134 (179) 76 PRK09219 xanthine phosphoribos 97.4 0.00032 8.1E-09 44.2 5.0 39 16-54 116-154 (189) 77 KOG1503 consensus 96.6 0.0033 8.4E-08 38.8 4.4 46 13-58 243-288 (354) 78 PRK09213 purine operon repress 95.0 0.059 1.5E-06 32.0 5.3 43 15-57 194-236 (274) 79 KOG1017 consensus 94.4 0.11 2.8E-06 30.5 5.4 47 7-53 179-227 (267) 80 TIGR01743 purR_Bsub pur operon 93.8 0.095 2.4E-06 30.9 4.2 42 16-57 194-235 (269) 81 TIGR01744 XPRTase xanthine pho 90.5 0.48 1.2E-05 27.1 4.4 45 6-52 108-152 (191) 82 pfam01488 Shikimate_DH Shikima 80.5 3.7 9.4E-05 22.3 4.7 41 8-52 3-43 (134) 83 cd01065 NAD_bind_Shikimate_DH 72.8 8.6 0.00022 20.3 4.8 36 13-52 15-50 (155) 84 PRK13940 glutamyl-tRNA reducta 64.1 7.6 0.00019 20.6 3.1 40 8-51 172-211 (414) 85 PRK00045 hemA glutamyl-tRNA re 62.9 8.3 0.00021 20.4 3.1 40 9-52 174-213 (429) 86 cd05213 NAD_bind_Glutamyl_tRNA 60.8 9.8 0.00025 20.0 3.2 40 9-52 170-209 (311) 87 cd01525 RHOD_Kc Member of the 57.5 19 0.00049 18.4 4.3 35 14-51 62-96 (105) 88 COG2072 TrkA Predicted flavopr 56.3 20 0.00052 18.3 4.4 36 12-52 170-205 (443) 89 cd01444 GlpE_ST GlpE sulfurtra 53.9 22 0.00057 18.1 4.2 33 16-51 55-87 (96) 90 cd01528 RHOD_2 Member of the R 51.3 25 0.00063 17.8 4.3 33 16-51 57-89 (101) 91 COG4825 Uncharacterized membra 50.1 26 0.00066 17.7 4.0 45 9-53 172-216 (395) 92 cd00158 RHOD Rhodanese Homolog 45.2 27 0.00068 17.7 3.3 34 15-51 48-81 (89) 93 cd01674 Homoaconitase_Swivel H 44.0 21 0.00055 18.2 2.7 48 8-55 36-83 (129) 94 PRK00439 leuD 3-isopropylmalat 43.2 25 0.00063 17.8 2.9 49 8-56 39-87 (163) 95 pfam00694 Aconitase_C Aconitas 43.0 25 0.00065 17.8 2.9 39 17-55 73-112 (131) 96 PRK00886 2-phosphosulfolactate 42.6 34 0.00087 17.1 4.8 43 5-52 6-48 (240) 97 KOG4203 consensus 41.8 26 0.00065 17.7 2.8 35 11-46 381-415 (473) 98 PRK10693 response regulator of 40.7 34 0.00087 17.1 3.3 31 14-47 4-34 (337) 99 smart00450 RHOD Rhodanese Homo 38.1 40 0.001 16.7 4.0 34 15-51 54-87 (100) 100 cd00227 CPT Chloramphenicol (C 37.2 36 0.00092 16.9 3.0 34 18-51 85-118 (175) 101 cd01534 4RHOD_Repeat_3 Member 37.0 42 0.0011 16.6 4.8 33 15-51 54-86 (95) 102 PRK09620 hypothetical protein; 35.4 45 0.0011 16.4 4.5 37 15-51 1-50 (229) 103 TIGR01035 hemA glutamyl-tRNA r 34.5 47 0.0012 16.3 3.6 40 8-51 174-215 (436) 104 cd01529 4RHOD_Repeats Member o 34.3 47 0.0012 16.3 4.2 33 16-51 55-87 (96) 105 cd01518 RHOD_YceA Member of th 34.2 47 0.0012 16.3 5.1 34 15-51 59-92 (101) 106 PRK01641 leuD isopropylmalate 33.2 49 0.0012 16.2 3.1 42 13-54 63-104 (201) 107 cd01447 Polysulfide_ST Polysul 33.0 49 0.0013 16.2 4.1 33 16-51 60-92 (103) 108 TIGR01139 cysK cysteine syntha 33.0 49 0.0012 16.2 3.1 28 26-53 174-203 (312) 109 PRK06921 hypothetical protein; 32.8 16 0.00041 18.9 0.6 33 10-42 169-209 (265) 110 TIGR01136 cysKM cysteine synth 31.6 48 0.0012 16.3 2.9 28 27-54 176-205 (315) 111 PRK11749 putative oxidoreducta 30.4 55 0.0014 16.0 4.4 35 14-52 273-307 (460) 112 pfam07931 CPT Chloramphenicol 30.0 56 0.0014 15.9 3.0 33 18-50 83-116 (174) 113 cd00404 Aconitase_swivel Aconi 29.8 48 0.0012 16.3 2.6 41 15-55 13-53 (88) 114 pfam03192 DUF257 Pyrococcus pr 29.0 50 0.0013 16.2 2.6 24 19-45 40-63 (210) 115 TIGR02668 moaA_archaeal probab 28.7 56 0.0014 15.9 2.8 25 26-50 96-120 (324) 116 cd01532 4RHOD_Repeat_1 Member 28.3 60 0.0015 15.7 3.8 35 16-51 49-83 (92) 117 cd01644 RT_pepA17 RT_pepA17: R 27.9 32 0.00081 17.2 1.4 24 19-42 137-160 (213) 118 TIGR01809 Shik-DH-AROM shikima 27.5 62 0.0016 15.7 3.2 27 26-52 135-161 (291) 119 PRK00162 glpE thiosulfate sulf 27.4 62 0.0016 15.7 4.4 33 16-51 57-89 (104) 120 cd01527 RHOD_YgaP Member of th 26.4 65 0.0017 15.6 4.5 34 15-51 52-85 (99) 121 PRK06975 bifunctional uroporph 25.1 69 0.0018 15.4 5.4 44 12-59 134-177 (653) 122 PRK12422 chromosomal replicati 24.8 27 0.00069 17.6 0.6 38 10-47 195-238 (455) 123 COG0066 LeuD 3-isopropylmalate 24.8 60 0.0015 15.8 2.3 42 14-55 59-100 (191) 124 cd01579 AcnA_Bact_Swivel Bacte 24.6 51 0.0013 16.1 2.0 40 16-55 47-86 (121) 125 COG0373 HemA Glutamyl-tRNA red 24.6 70 0.0018 15.4 3.3 39 9-51 170-208 (414) 126 COG1204 Superfamily II helicas 23.9 73 0.0019 15.3 3.9 43 16-59 145-192 (766) 127 PRK00258 aroE shikimate 5-dehy 23.0 76 0.0019 15.2 4.8 35 14-52 119-153 (275) 128 cd01524 RHOD_Pyr_redox Member 22.7 77 0.002 15.2 4.2 32 16-51 50-81 (90) 129 TIGR02281 DTGA conserved hypot 22.5 46 0.0012 16.4 1.4 32 2-40 9-40 (121) 130 cd01577 IPMI_Swivel Aconatase- 22.0 62 0.0016 15.7 2.0 38 18-55 18-55 (91) 131 TIGR01137 cysta_beta cystathio 21.8 69 0.0018 15.4 2.2 25 26-50 186-210 (527) 132 TIGR01342 acon_putative aconit 21.8 31 0.0008 17.3 0.4 49 7-55 463-512 (658) 133 PRK00149 dnaA chromosomal repl 21.6 30 0.00077 17.3 0.3 39 10-48 201-245 (447) 134 COG0169 AroE Shikimate 5-dehyd 20.5 86 0.0022 14.9 5.1 35 14-52 123-157 (283) No 1 >PRK11595 gluconate periplasmic binding protein; Provisional Probab=99.68 E-value=6.6e-17 Score=112.78 Aligned_cols=53 Identities=38% Similarity=0.564 Sum_probs=49.7 Q ss_pred CCCEEEECCHHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEEEEEC Q ss_conf 976088251021002897599992004573889999999997899789999998306 Q gi|254780309|r 1 MRNAFNVPQYVSKHVAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILTFSRSL 57 (59) Q Consensus 1 l~gaf~i~~~~~~~i~gk~vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~~lar~~ 57 (59) ++|+|.+.++ ++|++|+|||||+|||+|+.++++.|+++||++|+++++|||+ T Consensus 175 v~~aF~~~~~----~~g~~vlLVDDV~TTGaTl~~~a~~L~~aGa~~V~v~~laRt~ 227 (227) T PRK11595 175 LKNAFRLELP----VQGQHMVIVDDVVTTGSTVAEIAQLLLRNGAATVQVWCLCRTL 227 (227) T ss_pred HHCCEECCCC----CCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEEEEEC T ss_conf 4288784578----8969799962014639999999999998099879999999679 No 2 >COG1040 ComFC Predicted amidophosphoribosyltransferases [General function prediction only] Probab=99.50 E-value=4e-14 Score=97.74 Aligned_cols=55 Identities=44% Similarity=0.630 Sum_probs=49.8 Q ss_pred CCCEEEECCHHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEEEEECC Q ss_conf 9760882510210028975999920045738899999999978997899999983068 Q gi|254780309|r 1 MRNAFNVPQYVSKHVAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILTFSRSLK 58 (59) Q Consensus 1 l~gaf~i~~~~~~~i~gk~vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~~lar~~~ 58 (59) ++|+|.+.++.... |+|+|||||||||+|+.++++.|++.|+++|.++++||+.. T Consensus 171 l~~aF~~~~~~~~~---~~vlLvDDV~TTGaTl~~~~~~L~~~Ga~~v~~~~lar~~~ 225 (225) T COG1040 171 LKGAFRLKKGIEEP---KNVLLVDDVYTTGATLKEAAKLLREAGAKRVFVLTLARAPE 225 (225) T ss_pred CCCCEECCCCCCCC---CCEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEEEEECCC T ss_conf 60563147876767---72899940066679999999999975991699999984589 No 3 >TIGR00201 comF comF family protein; InterPro: IPR005222 Proteins in this family are found in bacterial species which posses systems for natural transformation with exogenous DNA (eg Bacillus subtilis, Haemophilus influenzae), and also species without these systems (eg Escherichia coli). Competence protein F has been shown to be important for the uptake of exogenous DNA in naturally competent bacteria, though the precise role of this protein is not yet known , . GntX is a periplasmic gluconate binding protein thought to be part of a high-affinity gluconate transport system .. Probab=99.36 E-value=1.7e-13 Score=94.40 Aligned_cols=54 Identities=43% Similarity=0.546 Sum_probs=48.6 Q ss_pred CCCEEEECCHHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHH-CCCCEEEEEEEEE Q ss_conf 976088251021002897599992004573889999999997-8997899999983 Q gi|254780309|r 1 MRNAFNVPQYVSKHVAGLKILLIDDVYTTGATAKCAAIALKK-AGAMTVSILTFSR 55 (59) Q Consensus 1 l~gaf~i~~~~~~~i~gk~vliVDDiitTG~T~~~~~~~L~~-~ga~~V~~~~lar 55 (59) ++|+|.+.... ..++||+|+|||||+|||+||.++++.|.+ .||.+|..++|+| T Consensus 153 l~n~f~l~~~~-~~~~~~~ivL~DD~~TTGatl~~~~~lLl~k~ga~~V~~~~L~r 207 (207) T TIGR00201 153 LENAFKLKSKK-KEFQGRKIVLVDDVVTTGATLAEIAKLLLKKLGAAKVQVWSLAR 207 (207) T ss_pred HHHHHHHHCCC-CCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCHHHHHHCCC T ss_conf 55666542032-46887558997045101236899999998645700114412069 No 4 >TIGR01203 HGPRTase hypoxanthine phosphoribosyltransferase; InterPro: IPR005904 Phosphoribosyltransferases (PRT) are enzymes that catalyze the synthesis of beta-n-5'-monophosphates from phosphoribosylpyrophosphate (PRPP) and an enzyme specific amine. A number of PRT's are involved in the biosynthesis of purine, pyrimidine, and pyridine nucleotides, or in the salvage of purines and pyrimidines. Purine nucleotides are synthesized both via the de novo pathway and via the salvage pathway and are vital for cell functions and cell proliferation through DNA and RNA syntheses and ATP energy supply. This entry presents hypoxanthine phosphoribosyltransferase (2.4.2.8 from EC), which belongs to phosphoribosyltransferase family and is involved in purine salvage.; GO: 0004422 hypoxanthine phosphoribosyltransferase activity, 0006166 purine ribonucleoside salvage, 0005737 cytoplasm. Probab=99.22 E-value=1.5e-11 Score=83.76 Aligned_cols=56 Identities=18% Similarity=0.299 Sum_probs=51.6 Q ss_pred CCEEEECCHHHHCCC-CCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEEEEEC Q ss_conf 760882510210028-97599992004573889999999997899789999998306 Q gi|254780309|r 2 RNAFNVPQYVSKHVA-GLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILTFSRSL 57 (59) Q Consensus 2 ~gaf~i~~~~~~~i~-gk~vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~~lar~~ 57 (59) .|..++-.+...+++ ||+|||||||++||.||++..+.|+.++|+++.+++|-.-+ T Consensus 85 ~g~vki~kDld~di~~gk~VLiVEDIvDtG~Tl~~~~~~L~~r~Pksl~i~~LL~Kp 141 (183) T TIGR01203 85 SGDVKILKDLDEDIKRGKDVLIVEDIVDTGLTLSYLLELLKARKPKSLKIVTLLDKP 141 (183) T ss_pred ECCEEEEECCCCCCCCCCCEEEEEEHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECC T ss_conf 111379852789840378189996153424679999998713899368999986558 No 5 >COG0634 Hpt Hypoxanthine-guanine phosphoribosyltransferase [Nucleotide transport and metabolism] Probab=99.14 E-value=1.2e-10 Score=78.92 Aligned_cols=56 Identities=21% Similarity=0.345 Sum_probs=51.1 Q ss_pred CCEEEECCHHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEEEEEC Q ss_conf 76088251021002897599992004573889999999997899789999998306 Q gi|254780309|r 2 RNAFNVPQYVSKHVAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILTFSRSL 57 (59) Q Consensus 2 ~gaf~i~~~~~~~i~gk~vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~~lar~~ 57 (59) .|.+++..++..+++||+|||||||++||.|++++.+.|+.+||+++.+++|..-. T Consensus 78 sg~v~i~kDld~di~grdVLiVeDIiDsG~TLs~i~~~l~~r~a~sv~i~tLldK~ 133 (178) T COG0634 78 SGEVKILKDLDEDIKGRDVLIVEDIIDSGLTLSKVRDLLKERGAKSVRIATLLDKP 133 (178) T ss_pred CCCEEEECCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEEEEECC T ss_conf 77168853566677898499985210367559999999975699768999986076 No 6 >PTZ00271 hypoxanthine-guanine phosphoribosyltransferase; Provisional Probab=99.13 E-value=1.1e-10 Score=79.10 Aligned_cols=54 Identities=11% Similarity=0.149 Sum_probs=50.0 Q ss_pred CCEEEECCHHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEEEE Q ss_conf 760882510210028975999920045738899999999978997899999983 Q gi|254780309|r 2 RNAFNVPQYVSKHVAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILTFSR 55 (59) Q Consensus 2 ~gaf~i~~~~~~~i~gk~vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~~lar 55 (59) .|..++..+...+++||+|||||||++||.||.++.+.|+..||++|.+++|.- T Consensus 103 sG~v~i~~dl~~~i~gk~VLIVEDIvDTG~TL~~l~~~l~~~~p~Svki~tLl~ 156 (211) T PTZ00271 103 SGQVRMLLDVRDSVENRHILIVEDIVDSAITLQYLMRFMLAKKPASLKTVVLLD 156 (211) T ss_pred CCEEEEEECCCCCCCCCEEEEEECHHCCCHHHHHHHHHHHHCCCCEEEEEEEEE T ss_conf 752899445887768987999941321255899999999854998389999784 No 7 >PRK09162 hypoxanthine-guanine phosphoribosyltransferase; Provisional Probab=99.10 E-value=1.9e-10 Score=77.85 Aligned_cols=53 Identities=17% Similarity=0.162 Sum_probs=46.3 Q ss_pred CEEEECCHHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEEEE Q ss_conf 60882510210028975999920045738899999999978997899999983 Q gi|254780309|r 3 NAFNVPQYVSKHVAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILTFSR 55 (59) Q Consensus 3 gaf~i~~~~~~~i~gk~vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~~lar 55 (59) |...+..+...+++||||||||||++||.|+.++.+.|+..||++|.+++|.- T Consensus 83 g~v~~~~~~~~~i~gk~VLiVeDIvDTG~Tl~~l~~~l~~~gp~Svki~~Lld 135 (181) T PRK09162 83 GELVWKVKPRESLKGRTVLVVDDILDEGHTLAAIRDWCLEMGAAEVYSAVLVD 135 (181) T ss_pred CCEEEEECCCCCCCCCEEEEEEEEECCHHHHHHHHHHHHHCCCCEEEEEEEEE T ss_conf 84799735775668986999931876279999999999704998899999996 No 8 >COG0462 PrsA Phosphoribosylpyrophosphate synthetase [Nucleotide transport and metabolism / Amino acid transport and metabolism] Probab=99.06 E-value=3.5e-10 Score=76.43 Aligned_cols=49 Identities=31% Similarity=0.378 Sum_probs=43.9 Q ss_pred HHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEEEEECC Q ss_conf 0210028975999920045738899999999978997899999983068 Q gi|254780309|r 10 YVSKHVAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILTFSRSLK 58 (59) Q Consensus 10 ~~~~~i~gk~vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~~lar~~~ 58 (59) ....+++||+++|||||++||.|+..+++.|++.||++|++++.+..+. T Consensus 207 ~~~gdV~gk~~iiVDDiIdTgGTi~~Aa~~Lk~~GAk~V~a~~tH~vfs 255 (314) T COG0462 207 NLIGDVEGKDVVIVDDIIDTGGTIAKAAKALKERGAKKVYAAATHGVFS 255 (314) T ss_pred CCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEEECHHHC T ss_conf 3433677987999936513656899999999977997599999836607 No 9 >PTZ00149 hypoxanthine phosphoribosyltransferase; Provisional Probab=99.04 E-value=4.6e-10 Score=75.80 Aligned_cols=53 Identities=19% Similarity=0.179 Sum_probs=47.8 Q ss_pred CEEEECCHHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEEEE Q ss_conf 60882510210028975999920045738899999999978997899999983 Q gi|254780309|r 3 NAFNVPQYVSKHVAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILTFSR 55 (59) Q Consensus 3 gaf~i~~~~~~~i~gk~vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~~lar 55 (59) |..++..+...+++||+||||+||++||.||.+..+.|++.+|++|.+++|-. T Consensus 123 G~v~i~~d~~~~l~gk~VLIVEDIvDTG~Tl~~l~~~l~~~~p~svkv~~LL~ 175 (231) T PTZ00149 123 DRIEIVSEDLSCLKDKHVLIVEDIIDTGKTLLKFCEYLKKFEIKTIAIACLFI 175 (231) T ss_pred CCEEEECCCCCCCCCCEEEEEECEECHHHHHHHHHHHHHHCCCCEEEEEEEEE T ss_conf 73699226633268984999955277178999999999737999689999785 No 10 >PRK03675 consensus Probab=99.03 E-value=4.1e-10 Score=76.06 Aligned_cols=47 Identities=30% Similarity=0.438 Sum_probs=43.0 Q ss_pred HHCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEEEEECC Q ss_conf 10028975999920045738899999999978997899999983068 Q gi|254780309|r 12 SKHVAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILTFSRSLK 58 (59) Q Consensus 12 ~~~i~gk~vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~~lar~~~ 58 (59) ..+++||+|+|||||++||.|+..+++.|+++||++|++++.+..++ T Consensus 196 ~~dV~Gk~vIIVDDiIdTGgTl~~aa~~Lk~~GA~~V~~~aTHglfs 242 (279) T PRK03675 196 DVDVKGKNVLIVDDIISTGGTMIRAAEILRKLGAKKIFVVATHGVFA 242 (279) T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCC T ss_conf 55547967999745102527899999999976998699999781068 No 11 >PRK06827 phosphoribosylpyrophosphate synthetase; Provisional Probab=99.03 E-value=5.3e-10 Score=75.45 Aligned_cols=46 Identities=24% Similarity=0.343 Sum_probs=42.3 Q ss_pred HCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEEEEECC Q ss_conf 0028975999920045738899999999978997899999983068 Q gi|254780309|r 13 KHVAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILTFSRSLK 58 (59) Q Consensus 13 ~~i~gk~vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~~lar~~~ 58 (59) .+++||+++||||+++||.|+..+++.|++.||++|++++-+..++ T Consensus 261 gdV~GK~~IIvDDmIdTggTl~~aA~~Lk~~GA~~V~a~aTHgvfS 306 (381) T PRK06827 261 RDVEGKDVFIVDDMIASGGSVLDAAKELKSRGAKKIICAVSFPFFT 306 (381) T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEEEEECHHCC T ss_conf 5567988999724314526899999999987998899999736604 No 12 >PTZ00145 phosphoribosylpyrophosphate synthetase; Provisional Probab=99.03 E-value=4.2e-10 Score=76.03 Aligned_cols=48 Identities=27% Similarity=0.278 Sum_probs=43.8 Q ss_pred HHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEEEEECC Q ss_conf 210028975999920045738899999999978997899999983068 Q gi|254780309|r 11 VSKHVAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILTFSRSLK 58 (59) Q Consensus 11 ~~~~i~gk~vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~~lar~~~ 58 (59) ...+++||+++|||||++||.|+..+++.|++.||++|++++.+..++ T Consensus 333 iIGDVkGK~~IIVDDmIDTgGTL~~AA~~Lke~GAk~VyA~aTHGVfS 380 (443) T PTZ00145 333 LVGNVYDSDVIIVDDMIDTSGTLCEAAKQLKKHGARRVFAFATHGLFS 380 (443) T ss_pred EEECCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEEEEECCCCC T ss_conf 575027987899677434556799999999967998799999773078 No 13 >PRK02812 ribose-phosphate pyrophosphokinase; Provisional Probab=99.01 E-value=4e-10 Score=76.13 Aligned_cols=48 Identities=31% Similarity=0.334 Sum_probs=43.2 Q ss_pred HHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEEEEECC Q ss_conf 210028975999920045738899999999978997899999983068 Q gi|254780309|r 11 VSKHVAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILTFSRSLK 58 (59) Q Consensus 11 ~~~~i~gk~vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~~lar~~~ 58 (59) ...+++||+++|||||++||.|+..+++.|+++||++|++++.+..++ T Consensus 224 ~vGdV~Gr~~IIVDDiIdTGgTl~~aa~~Lk~~GA~~V~a~aTHgvfs 271 (331) T PRK02812 224 VIGDVKGKTAILVDDMIDTGGTICEGARLLRKEGAKRVYACATHAVFS 271 (331) T ss_pred CCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCC T ss_conf 445545651899621442279999999999857998789999896558 No 14 >PRK01506 consensus Probab=98.99 E-value=6e-10 Score=75.16 Aligned_cols=47 Identities=32% Similarity=0.322 Sum_probs=42.7 Q ss_pred HHCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEEEEECC Q ss_conf 10028975999920045738899999999978997899999983068 Q gi|254780309|r 12 SKHVAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILTFSRSLK 58 (59) Q Consensus 12 ~~~i~gk~vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~~lar~~~ 58 (59) ..+++||+|+|||||++||.|+..+++.|+++||++|++++.+..+. T Consensus 212 ~gdV~Gr~vIIVDDiI~TGgTl~~aa~~Lk~~GA~~V~~~~THglfs 258 (317) T PRK01506 212 IGNIEGKTAILIDDIIDTAGTITLAANALVENGASEVYACCTHPVLS 258 (317) T ss_pred CCCCCCCEEEEECCHHHCCCHHHHHHHHHHHCCCCEEEEEEECCCCC T ss_conf 56557962787513221350599999999865997589999770068 No 15 >PRK05259 consensus Probab=98.99 E-value=5.9e-10 Score=75.22 Aligned_cols=47 Identities=34% Similarity=0.360 Sum_probs=42.9 Q ss_pred HHCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEEEEECC Q ss_conf 10028975999920045738899999999978997899999983068 Q gi|254780309|r 12 SKHVAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILTFSRSLK 58 (59) Q Consensus 12 ~~~i~gk~vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~~lar~~~ 58 (59) ..+++||+|+|||||++||.|+..+++.|+++||++|++++.+..++ T Consensus 204 ~gdV~Gk~~IIvDDiIdTGgTl~~aa~~Lk~~GA~~V~~~~THgvfs 250 (310) T PRK05259 204 IGDVSGRDCILIDDIVDSGGTLCNAAEALLANGANSVTAYITHGVLS 250 (310) T ss_pred CCCCCCCEEEEECCHHHCHHHHHHHHHHHHHCCCCEEEEEEECCCCC T ss_conf 56623124895173441688999999999877998699999785368 No 16 >PRK02269 ribose-phosphate pyrophosphokinase; Provisional Probab=98.99 E-value=6.3e-10 Score=75.07 Aligned_cols=47 Identities=38% Similarity=0.350 Sum_probs=42.7 Q ss_pred HHCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEEEEECC Q ss_conf 10028975999920045738899999999978997899999983068 Q gi|254780309|r 12 SKHVAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILTFSRSLK 58 (59) Q Consensus 12 ~~~i~gk~vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~~lar~~~ 58 (59) ..+++||+|+|||||++||.|+..+++.|++.||++|++++.+..++ T Consensus 212 ~gdV~Gk~vIIVDDiIdTGgTl~~aa~~Lk~~GA~~V~~~~THgvfs 258 (321) T PRK02269 212 IGNVSGKKCILIDDMIDTAGTICHAADALAEAGATAVYASCTHPVLS 258 (321) T ss_pred CCCCCCCEEEEECCHHHCHHHHHHHHHHHHHCCCCEEEEEEECCCCC T ss_conf 77406976999662431426699999999848998279999780278 No 17 >PRK00553 ribose-phosphate pyrophosphokinase; Provisional Probab=98.99 E-value=5.8e-10 Score=75.26 Aligned_cols=47 Identities=30% Similarity=0.342 Sum_probs=42.9 Q ss_pred HHCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEEEEECC Q ss_conf 10028975999920045738899999999978997899999983068 Q gi|254780309|r 12 SKHVAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILTFSRSLK 58 (59) Q Consensus 12 ~~~i~gk~vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~~lar~~~ 58 (59) ..+++||+++|||||++||.|+..+++.|+++||++|++++.+..++ T Consensus 221 iGdV~Gk~vIIVDDiIdTGgTl~~aa~~Lk~~GA~~V~a~aTHgvfs 267 (340) T PRK00553 221 LGEVKNKNCLIVDDMIDTGGTVIAAAKLLKKQKAKKVCVMATHGLFN 267 (340) T ss_pred CCCCCCCEEEEECCHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCC T ss_conf 55546854895252443125699999999987998799999795148 No 18 >PRK02270 consensus Probab=98.98 E-value=6e-10 Score=75.19 Aligned_cols=47 Identities=30% Similarity=0.368 Sum_probs=42.7 Q ss_pred HHCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEEEEECC Q ss_conf 10028975999920045738899999999978997899999983068 Q gi|254780309|r 12 SKHVAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILTFSRSLK 58 (59) Q Consensus 12 ~~~i~gk~vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~~lar~~~ 58 (59) ..+++||+++|||||++||.|+..+++.|+++||++|++++.+..++ T Consensus 209 iGdV~Gk~~IIVDDiIdTGgTl~~aa~~Lk~~GA~~V~~~aTHgvfs 255 (327) T PRK02270 209 IGDVDGKNAVIIDDIIDTGGTIINAAEVLKEKGAKKIVLAATHGLFS 255 (327) T ss_pred CCCEEEEEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEEEECHHCC T ss_conf 56312014899767000547799999999987998799999774438 No 19 >PRK01132 consensus Probab=98.98 E-value=6.2e-10 Score=75.10 Aligned_cols=46 Identities=26% Similarity=0.388 Sum_probs=42.2 Q ss_pred HCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEEEEECC Q ss_conf 0028975999920045738899999999978997899999983068 Q gi|254780309|r 13 KHVAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILTFSRSLK 58 (59) Q Consensus 13 ~~i~gk~vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~~lar~~~ 58 (59) .+++||+|+|||||++||.|+..+++.|++.||++|++++.+..++ T Consensus 199 ~dV~gk~~IIVDDiidTGgTl~~aa~~Lk~~GA~~V~a~~THglfs 244 (286) T PRK01132 199 IDSNGKKILIVDDIISTGGTIAKSSRILRDKGASKIYVSAVHGLFV 244 (286) T ss_pred CCEEEEEEEEEECHHHCHHHHHHHHHHHHHCCCCEEEEEEECCCCC T ss_conf 2146415999815021238999999999987998499999682067 No 20 >PRK01999 consensus Probab=98.98 E-value=7.2e-10 Score=74.74 Aligned_cols=48 Identities=25% Similarity=0.345 Sum_probs=43.0 Q ss_pred HHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEEEEECC Q ss_conf 210028975999920045738899999999978997899999983068 Q gi|254780309|r 11 VSKHVAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILTFSRSLK 58 (59) Q Consensus 11 ~~~~i~gk~vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~~lar~~~ 58 (59) ...+++||+++|||||++||.|+..+++.|+++||++|++++.+..++ T Consensus 206 ~~gdV~Gk~~IIVDDiIdTGgTl~~aa~~L~~~GA~~V~~~~THglfs 253 (311) T PRK01999 206 IIGDVKGKNVILVDDMVDTAGTITKAADLMMEKGAKSVRAIASHAVMS 253 (311) T ss_pred CCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCC T ss_conf 343547966999754444347899999999855997389999455458 No 21 >PRK02458 ribose-phosphate pyrophosphokinase; Provisional Probab=98.98 E-value=7.7e-10 Score=74.59 Aligned_cols=47 Identities=32% Similarity=0.396 Sum_probs=42.6 Q ss_pred HHCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEEEEECC Q ss_conf 10028975999920045738899999999978997899999983068 Q gi|254780309|r 12 SKHVAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILTFSRSLK 58 (59) Q Consensus 12 ~~~i~gk~vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~~lar~~~ 58 (59) ..+++||+++|||||++||.|+..+++.|++.||++|++++.+..++ T Consensus 213 vgdV~Gr~vIIVDDiIdTGgTl~~aa~~Lk~~GA~~V~~~~THglfs 259 (323) T PRK02458 213 IGDVSGKKAILIDDILNTGKTFAEAAKILERSGATEIYAVASHGLFA 259 (323) T ss_pred CCCCCCCEEEEECCHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCC T ss_conf 36668966787620232248899999999964997689999764257 No 22 >PRK03092 ribose-phosphate pyrophosphokinase; Provisional Probab=98.97 E-value=7.8e-10 Score=74.55 Aligned_cols=48 Identities=40% Similarity=0.431 Sum_probs=42.9 Q ss_pred HHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEEEEECC Q ss_conf 210028975999920045738899999999978997899999983068 Q gi|254780309|r 11 VSKHVAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILTFSRSLK 58 (59) Q Consensus 11 ~~~~i~gk~vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~~lar~~~ 58 (59) ...+++||+|+|||||++||.|+..+++.|+++||++|++++.+..++ T Consensus 195 ~~gdV~Gr~viIVDDiI~TGgTl~~aa~~Lk~~GA~~V~~~~THglfs 242 (304) T PRK03092 195 VVGDVEGRTCVLVDDMIDTGGTIAGAVEALKEAGAKDVIIAATHGVLS 242 (304) T ss_pred CCCCCCCCEEEEECCHHHCCHHHHHHHHHHHHCCCCEEEEEEECCCCC T ss_conf 456767875999776454373599999999866998399999793459 No 23 >PRK07199 phosphoribosylpyrophosphate synthetase; Provisional Probab=98.97 E-value=9.7e-10 Score=74.05 Aligned_cols=47 Identities=30% Similarity=0.263 Sum_probs=42.4 Q ss_pred HHCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEEEEECC Q ss_conf 10028975999920045738899999999978997899999983068 Q gi|254780309|r 12 SKHVAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILTFSRSLK 58 (59) Q Consensus 12 ~~~i~gk~vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~~lar~~~ 58 (59) ..+++||+++|||||++||.|+..+++.|++.||++|++++.+..++ T Consensus 206 ~~~v~gk~~IIVDDiIdTGgTl~~aa~~Lk~~GA~~V~~~aTHgvfs 252 (301) T PRK07199 206 LSAWAGRTPVLVDDIVSTGRTLIEAARQLLAAGAASPVCVGVHALFA 252 (301) T ss_pred CCCCCCCCEEEECCHHHCHHHHHHHHHHHHHCCCCEEEEEEECCCCC T ss_conf 54558995478664221437799999999986998589999786478 No 24 >PRK04923 ribose-phosphate pyrophosphokinase; Provisional Probab=98.97 E-value=8.1e-10 Score=74.47 Aligned_cols=48 Identities=33% Similarity=0.390 Sum_probs=42.9 Q ss_pred HHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEEEEECC Q ss_conf 210028975999920045738899999999978997899999983068 Q gi|254780309|r 11 VSKHVAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILTFSRSLK 58 (59) Q Consensus 11 ~~~~i~gk~vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~~lar~~~ 58 (59) ...+++||+++|||||++||.|+..+++.|+++||++|++++.+..++ T Consensus 211 ~~gdV~Gk~~IIVDDiIdTGgTl~~aa~~Lk~~GA~~V~~~~THglfs 258 (319) T PRK04923 211 IIGDVQGKTCVLVDDLVDTAGTLCAAAAALKQRGALKVVAYITHPVLS 258 (319) T ss_pred CCCCCCCCEEEEECCHHCCCHHHHHHHHHHHHCCCCEEEEEEECCCCC T ss_conf 444437966999664320651299999999875998689999797688 No 25 >PRK00934 ribose-phosphate pyrophosphokinase; Provisional Probab=98.97 E-value=9.6e-10 Score=74.08 Aligned_cols=46 Identities=30% Similarity=0.419 Sum_probs=42.3 Q ss_pred HCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEEEEECC Q ss_conf 0028975999920045738899999999978997899999983068 Q gi|254780309|r 13 KHVAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILTFSRSLK 58 (59) Q Consensus 13 ~~i~gk~vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~~lar~~~ 58 (59) .+++||+|+|||||++||.|+..+++.|++.||++|++++.+..++ T Consensus 200 ~dV~Gr~~IIvDDiidTGgTl~~aa~~Lk~~GA~~V~~~~THglfs 245 (286) T PRK00934 200 LDVKGKDVLIVDDIISTGGTMAKAISILKEQGAKKIYVSCVHPVLV 245 (286) T ss_pred CCCCCCEEEEECCHHHCHHHHHHHHHHHHHCCCCEEEEEEECCCCC T ss_conf 2225878999656221538899999999986998699999790078 No 26 >PRK04117 consensus Probab=98.96 E-value=9e-10 Score=74.22 Aligned_cols=48 Identities=33% Similarity=0.378 Sum_probs=43.0 Q ss_pred HHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEEEEECC Q ss_conf 210028975999920045738899999999978997899999983068 Q gi|254780309|r 11 VSKHVAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILTFSRSLK 58 (59) Q Consensus 11 ~~~~i~gk~vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~~lar~~~ 58 (59) ...+++||+|+|||||++||.|+..+++.|++.||++|++++.+..++ T Consensus 205 ~~gdV~Gk~vIIVDDiI~TGgTi~~aa~~L~~~GA~~V~~~~THglfs 252 (309) T PRK04117 205 IIGDVKGKDVILVDDMIDTAGTIVKAAEALKEKGATSVMACCTHAVLS 252 (309) T ss_pred CCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCC T ss_conf 456648986897572565279999999999866997489999455458 No 27 >PRK02039 consensus Probab=98.96 E-value=9e-10 Score=74.22 Aligned_cols=48 Identities=29% Similarity=0.295 Sum_probs=43.0 Q ss_pred HHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEEEEECC Q ss_conf 210028975999920045738899999999978997899999983068 Q gi|254780309|r 11 VSKHVAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILTFSRSLK 58 (59) Q Consensus 11 ~~~~i~gk~vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~~lar~~~ 58 (59) ...+++||+++|||||++||.|+..+++.|+++||++|++++.+..++ T Consensus 208 ~igdV~Gk~~IIVDDiIdTGgTl~~aa~~Lk~~GA~~V~~~~THgvfs 255 (316) T PRK02039 208 IIGEVEGRTCVIMDDMVDTAGTLCKAAQVLKERGAKQVFAYATHPVLS 255 (316) T ss_pred CCCCCCCCEEEEECCHHHCHHHHHHHHHHHHHCCCCEEEEEEECCCCC T ss_conf 466538972671172554568899999999976998579999784257 No 28 >PRK01259 ribose-phosphate pyrophosphokinase; Provisional Probab=98.96 E-value=9e-10 Score=74.23 Aligned_cols=47 Identities=36% Similarity=0.369 Sum_probs=42.4 Q ss_pred HHCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEEEEECC Q ss_conf 10028975999920045738899999999978997899999983068 Q gi|254780309|r 12 SKHVAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILTFSRSLK 58 (59) Q Consensus 12 ~~~i~gk~vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~~lar~~~ 58 (59) ..+++||+++|||||++||.|+..+++.|+++||++|++++.+..++ T Consensus 203 iGdV~Gk~vIIvDDiI~TGgTl~~aa~~Lk~~GA~~V~~~~THglfs 249 (309) T PRK01259 203 IGDVEGRDCILVDDMIDTGGTLCKAAEALKERGAKSVFAYATHPVLS 249 (309) T ss_pred CCCCCCCEEEEECCHHHCCHHHHHHHHHHHHCCCCEEEEEEECHHCC T ss_conf 67756643999765343456599999999756996699998763139 No 29 >PRK05038 consensus Probab=98.95 E-value=9.1e-10 Score=74.21 Aligned_cols=48 Identities=35% Similarity=0.374 Sum_probs=43.0 Q ss_pred HHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEEEEECC Q ss_conf 210028975999920045738899999999978997899999983068 Q gi|254780309|r 11 VSKHVAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILTFSRSLK 58 (59) Q Consensus 11 ~~~~i~gk~vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~~lar~~~ 58 (59) ...+++||+++|||||++||.|+..+++.|++.||++|++++.+..++ T Consensus 207 ~~gdV~Gk~~iIVDDiIdTGgTl~~aa~~Lk~~GA~~V~~~~THglfs 254 (315) T PRK05038 207 IIGDVAGRDCILVDDMIDTGGTLCKAAEALKERGAKRVFAYATHPVFS 254 (315) T ss_pred CCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCC T ss_conf 456434413799757222515899999999965998635998653558 No 30 >PRK04554 consensus Probab=98.95 E-value=9.5e-10 Score=74.09 Aligned_cols=48 Identities=29% Similarity=0.342 Sum_probs=43.1 Q ss_pred HHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEEEEECC Q ss_conf 210028975999920045738899999999978997899999983068 Q gi|254780309|r 11 VSKHVAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILTFSRSLK 58 (59) Q Consensus 11 ~~~~i~gk~vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~~lar~~~ 58 (59) ...+++||+++|||||++||.|+..+++.|+++||++|++++.+..++ T Consensus 209 ~vgdV~Gk~~IIVDDiIdTGgTl~~aa~~Lk~~GA~~V~~~aTHglfs 256 (327) T PRK04554 209 IIGDIQGRTCLIVDDMIDTANTLCKAAVALKERGAERVLAYASHAVFS 256 (327) T ss_pred CCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCC T ss_conf 556412223672043213506799999999976998789998791606 No 31 >pfam00156 Pribosyltran Phosphoribosyl transferase domain. This family includes a range of diverse phosphoribosyl transferase enzymes. This family includes: Adenine phosphoribosyltransferase EC:2.4.2.7. Hypoxanthine-guanine-xanthine phosphoribosyltransferase. Hypoxanthine phosphoribosyltransferase EC:2.4.2.8. Ribose-phosphate pyrophosphokinase i EC:2.7.6.1. Amidophosphoribosyltransferase EC:2.4.2.14. Orotate phosphoribosyltransferase EC:2.4.2.10. Uracil phosphoribosyltransferase EC:2.4.2.9. Xanthine-guanine phosphoribosyltransferase EC:2.4.2.22. In Arabidopsis, At the very N-terminus of this domain is the ATP-GTP-binding domain. Probab=98.87 E-value=4.9e-09 Score=70.25 Aligned_cols=45 Identities=36% Similarity=0.548 Sum_probs=40.6 Q ss_pred HHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEEE Q ss_conf 021002897599992004573889999999997899789999998 Q gi|254780309|r 10 YVSKHVAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILTFS 54 (59) Q Consensus 10 ~~~~~i~gk~vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~~la 54 (59) .....++||+||||||+++||.|+.++.+.|+++|++.|.++++. T Consensus 79 ~~~~~~~g~~VliVDDv~~tG~Tl~~~~~~l~~~g~~~v~~~vli 123 (123) T pfam00156 79 RLPELLKGKRVLIVDDVLDTGGTLRAAVELLKKAGAKVVGVAVLV 123 (123) T ss_pred CCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCEEEEEEEEC T ss_conf 243236999999984876843899999999994799099999989 No 32 >PRK02277 orotate phosphoribosyltransferase-like protein; Provisional Probab=98.73 E-value=2e-08 Score=66.90 Aligned_cols=42 Identities=36% Similarity=0.509 Sum_probs=39.8 Q ss_pred HCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEEE Q ss_conf 002897599992004573889999999997899789999998 Q gi|254780309|r 13 KHVAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILTFS 54 (59) Q Consensus 13 ~~i~gk~vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~~la 54 (59) ..++||+|+||||++|||.|+.++++.++++|+..+.++++. T Consensus 137 a~V~Gk~VlIVDDViTTG~T~~e~ie~l~~~Ga~vv~~~Vlv 178 (201) T PRK02277 137 ASVAGKRCVIVDDVITSGNTMKETIEYLKEHGAKPVAVVVLV 178 (201) T ss_pred CCCCCCEEEEEEECCCCCCCHHHHHHHHHHCCCEEEEEEEEE T ss_conf 343787899997023778249999999998699799999999 No 33 >COG0034 PurF Glutamine phosphoribosylpyrophosphate amidotransferase [Nucleotide transport and metabolism] Probab=98.62 E-value=4.5e-08 Score=65.03 Aligned_cols=49 Identities=29% Similarity=0.431 Sum_probs=43.5 Q ss_pred HHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEEEEECC Q ss_conf 0210028975999920045738899999999978997899999983068 Q gi|254780309|r 10 YVSKHVAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILTFSRSLK 58 (59) Q Consensus 10 ~~~~~i~gk~vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~~lar~~~ 58 (59) +.+..++||.|++|||.|.+|+|+..+++.|+++||++|++..-+..++ T Consensus 341 pvr~~v~GKrVvlVDDSIVRGTTsr~IV~mlReAGAkEVHvriasP~i~ 389 (470) T COG0034 341 PVREVVKGKRVVLVDDSIVRGTTSRRIVQMLREAGAKEVHVRIASPPIR 389 (470) T ss_pred CHHHHHCCCEEEEECCCCCCCCCHHHHHHHHHHHCCCEEEEEECCCCCC T ss_conf 0178858976999726514576699999999971887889984289756 No 34 >COG0856 Orotate phosphoribosyltransferase homologs [Nucleotide transport and metabolism] Probab=98.58 E-value=1.3e-07 Score=62.52 Aligned_cols=50 Identities=28% Similarity=0.415 Sum_probs=42.6 Q ss_pred CEEEECCHHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEEEE Q ss_conf 60882510210028975999920045738899999999978997899999983 Q gi|254780309|r 3 NAFNVPQYVSKHVAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILTFSR 55 (59) Q Consensus 3 gaf~i~~~~~~~i~gk~vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~~lar 55 (59) |.|.-+ -..+.||+|+||||++|||.|+.++++.|++.|++.+-+.+|+- T Consensus 130 G~iS~N---FasV~gK~cvIVDDvittG~Ti~E~Ie~l~e~g~kPv~v~VL~d 179 (203) T COG0856 130 GSISSN---FASVEGKRCVIVDDVITTGSTIKETIEQLKEEGGKPVLVVVLAD 179 (203) T ss_pred CEEECC---CCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEEEEC T ss_conf 623123---21115754899832225672199999999975997479999972 No 35 >PRK09246 amidophosphoribosyltransferase; Provisional Probab=98.58 E-value=6.9e-08 Score=64.03 Aligned_cols=48 Identities=23% Similarity=0.373 Sum_probs=43.0 Q ss_pred HHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEEEEECC Q ss_conf 210028975999920045738899999999978997899999983068 Q gi|254780309|r 11 VSKHVAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILTFSRSLK 58 (59) Q Consensus 11 ~~~~i~gk~vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~~lar~~~ 58 (59) .+..++||+|+||||.|.+|+|+..+++.|+++||++|++..-+..+. T Consensus 352 i~~~i~gK~vvlVDDSIVRGtT~k~Iv~~Lr~aGAkeVh~riasPpi~ 399 (503) T PRK09246 352 IRAEFKGKNVLLVDDSIVRGTTSEQIVQMARDAGAKKVYFASAAPPVR 399 (503) T ss_pred CHHHCCCCEEEEEECCEECCCCHHHHHHHHHHCCCCEEEEEECCCCCC T ss_conf 643156976999845531164199999999975998899996799857 No 36 >PRK08525 amidophosphoribosyltransferase; Provisional Probab=98.55 E-value=8.8e-08 Score=63.47 Aligned_cols=49 Identities=29% Similarity=0.396 Sum_probs=43.2 Q ss_pred HHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEEEEECC Q ss_conf 0210028975999920045738899999999978997899999983068 Q gi|254780309|r 10 YVSKHVAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILTFSRSLK 58 (59) Q Consensus 10 ~~~~~i~gk~vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~~lar~~~ 58 (59) +.+..++||.|+||||.+.+|+|+..+++.|+++||++|++..-+..+. T Consensus 333 p~~~~i~gK~vvlvDDSIVRGtT~k~ii~~Lr~aGakeVh~~i~sPpi~ 381 (445) T PRK08525 333 PMRKVLEGKRIVVIDDSIVRGTTSKKIVSLLRAAGASEIHMAIACPEIK 381 (445) T ss_pred EHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCC T ss_conf 2345217986999817615577899999999977998899996899968 No 37 >PRK07631 amidophosphoribosyltransferase; Provisional Probab=98.54 E-value=8.9e-08 Score=63.45 Aligned_cols=48 Identities=27% Similarity=0.417 Sum_probs=42.8 Q ss_pred HHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEEEEEC Q ss_conf 021002897599992004573889999999997899789999998306 Q gi|254780309|r 10 YVSKHVAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILTFSRSL 57 (59) Q Consensus 10 ~~~~~i~gk~vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~~lar~~ 57 (59) +.+..++||+|++|||.|.+|+|+..+++.|+++||++|++..-+..+ T Consensus 341 ~~~~~v~gK~vvlVDDSIVRGtT~k~iv~~Lr~aGAkeVh~ri~sPpi 388 (475) T PRK07631 341 AVRGVVEGKRVVMVDDSIVRGTTSRRIVTMLREAGATEVHVRISSPPI 388 (475) T ss_pred ECCCCCCCCEEEEEECCEECCCCHHHHHHHHHHCCCCEEEEEECCCCC T ss_conf 442003897379974435106419999999997699889999689985 No 38 >PRK06781 amidophosphoribosyltransferase; Provisional Probab=98.54 E-value=9.2e-08 Score=63.35 Aligned_cols=48 Identities=35% Similarity=0.463 Sum_probs=42.9 Q ss_pred HHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEEEEECC Q ss_conf 210028975999920045738899999999978997899999983068 Q gi|254780309|r 11 VSKHVAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILTFSRSLK 58 (59) Q Consensus 11 ~~~~i~gk~vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~~lar~~~ 58 (59) .+..++||+|+||||.|.+|+|+..+++.|+++||++|++..-+..++ T Consensus 342 ~~~~i~gK~vvlVDDSIVRGtT~k~iv~~Lr~aGAkeVh~ri~sPpi~ 389 (471) T PRK06781 342 VRGVVEGKRVVMIDDSIVRGTTSKRIVRMLREAGATEVHVRIASPPLK 389 (471) T ss_pred CCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCC T ss_conf 100048988999816605575699999999977998899996899857 No 39 >PRK07349 amidophosphoribosyltransferase; Provisional Probab=98.53 E-value=9.7e-08 Score=63.24 Aligned_cols=48 Identities=29% Similarity=0.423 Sum_probs=42.8 Q ss_pred HHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEEEEEC Q ss_conf 021002897599992004573889999999997899789999998306 Q gi|254780309|r 10 YVSKHVAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILTFSRSL 57 (59) Q Consensus 10 ~~~~~i~gk~vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~~lar~~ 57 (59) +.+..++||+|+||||.|.+|+|+..+++.|+++||++|++..-+..+ T Consensus 365 ~~~~~i~gK~vvlvDDSIVRGtT~k~iv~~Lr~aGAkeVh~riasPpi 412 (495) T PRK07349 365 PLKDVLAGKRIIIVDDSIVRGTTSRKIVKALRDAGATEVHMRISSPPV 412 (495) T ss_pred ECHHHHCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCC T ss_conf 367885898599982660557469999999997699889999689985 No 40 >TIGR01090 apt adenine phosphoribosyltransferase; InterPro: IPR005764 Adenine phosphoribosyltransferase (APRTase, 2.4.2.7 from EC) is a widely distributed enzyme, and its deficiency in humans causes the accumulation of 2,8-dihydroxyadenine. It is the sole catalyst for adenine recycling in most eukaryotes.AMP + diphosphate = adenine + 5-phospho-alpha-D-ribose 1-diphosphate ; GO: 0003999 adenine phosphoribosyltransferase activity, 0006168 adenine salvage. Probab=98.53 E-value=1.7e-07 Score=61.86 Aligned_cols=51 Identities=25% Similarity=0.479 Sum_probs=44.8 Q ss_pred CCEEEECCHHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEE Q ss_conf 7608825102100289759999200457388999999999789978999999 Q gi|254780309|r 2 RNAFNVPQYVSKHVAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILTF 53 (59) Q Consensus 2 ~gaf~i~~~~~~~i~gk~vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~~l 53 (59) +..+.++.+--. ..|++||||||++-||.|+.++.+.+++.|++-+..+++ T Consensus 100 ~d~lEIh~DA~~-~~g~RVliVDDLlATGGT~~A~~eLi~~Lggev~~~aFl 150 (175) T TIGR01090 100 KDSLEIHKDAIK-IPGQRVLIVDDLLATGGTAEATLELIKKLGGEVVEAAFL 150 (175) T ss_pred CCEEEEEHHHHH-CCCCEEEEEECCCCCHHHHHHHHHHHHHHCCEEEEEEEE T ss_conf 303534111364-078908998322012678999999999859616874555 No 41 >PRK08341 amidophosphoribosyltransferase; Provisional Probab=98.53 E-value=8.7e-08 Score=63.50 Aligned_cols=49 Identities=29% Similarity=0.413 Sum_probs=43.3 Q ss_pred HHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEEEEECC Q ss_conf 0210028975999920045738899999999978997899999983068 Q gi|254780309|r 10 YVSKHVAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILTFSRSLK 58 (59) Q Consensus 10 ~~~~~i~gk~vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~~lar~~~ 58 (59) +.+..++||+|+||||.|.+|+|+..+++.|+++||++|++..-+..+. T Consensus 327 ~~~~~i~gK~vvlvDDSIVRGtT~k~iv~~Lr~aGAkeVh~ri~sPpi~ 375 (442) T PRK08341 327 PVREVINGKRVVLVDDSIVRGTTMKRIVKMLRDAGAREVHVRIASPPIR 375 (442) T ss_pred EEEEEECCCCEEEEECCEEECCCHHHHHHHHHHCCCCEEEEEECCCCCC T ss_conf 1000127981499614341054299999999976998899996899857 No 42 >PRK07272 amidophosphoribosyltransferase; Provisional Probab=98.53 E-value=1.1e-07 Score=63.04 Aligned_cols=47 Identities=34% Similarity=0.450 Sum_probs=42.6 Q ss_pred HHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEEEEEC Q ss_conf 21002897599992004573889999999997899789999998306 Q gi|254780309|r 11 VSKHVAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILTFSRSL 57 (59) Q Consensus 11 ~~~~i~gk~vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~~lar~~ 57 (59) .+..++||+|+||||.|.+|+|+..+++.|+++||++|++..-+..+ T Consensus 344 ~~~~i~gK~vvlVDDSIVRGtT~k~iv~~Lr~aGAkeVh~rissPpi 390 (484) T PRK07272 344 VSGVVKGKRVVMVDDSIVRGTTSRRIVKLLKEAGAKEVHVRIASPEL 390 (484) T ss_pred CHHHHCCCEEEEEECCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCC T ss_conf 54553797599982541126759999999997799889999689985 No 43 >PRK05793 amidophosphoribosyltransferase; Provisional Probab=98.53 E-value=9.9e-08 Score=63.19 Aligned_cols=49 Identities=33% Similarity=0.434 Sum_probs=43.4 Q ss_pred HHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEEEEECC Q ss_conf 0210028975999920045738899999999978997899999983068 Q gi|254780309|r 10 YVSKHVAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILTFSRSLK 58 (59) Q Consensus 10 ~~~~~i~gk~vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~~lar~~~ 58 (59) +.+..++||+|++|||.|.+|+|+..+++.|+++||++|++..-+..++ T Consensus 349 ~~~~~v~gK~vvlvDDSIVRGtT~k~iv~~Lr~aGakeVh~ri~sPpi~ 397 (472) T PRK05793 349 PLKVNVEGKRVVLIDDSIVRGTTSKRLVESLRRAGAKEVHFRVSSPPVK 397 (472) T ss_pred EEEECCCCCEEEEEECCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCC T ss_conf 2021006986999807705576799999999977999899996899968 No 44 >PRK09123 amidophosphoribosyltransferase; Provisional Probab=98.53 E-value=1.1e-07 Score=63.02 Aligned_cols=48 Identities=25% Similarity=0.339 Sum_probs=42.8 Q ss_pred HHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEEEEEC Q ss_conf 021002897599992004573889999999997899789999998306 Q gi|254780309|r 10 YVSKHVAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILTFSRSL 57 (59) Q Consensus 10 ~~~~~i~gk~vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~~lar~~ 57 (59) +.+..++||.|+||||.|.+|+|+..+++.|+++||++|++..-+..+ T Consensus 344 ~~~~~i~gK~vvlVDDSIVRGtT~k~iv~~Lr~aGAkeVh~ri~sPpi 391 (480) T PRK09123 344 ANRAVIEGKRVVLVDDSIVRGTTSRKIVQMLRDAGAKEVHLRIASPPT 391 (480) T ss_pred ECCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCC T ss_conf 033345898299980661536769999999997799889999689985 No 45 >KOG1448 consensus Probab=98.53 E-value=1.3e-07 Score=62.59 Aligned_cols=48 Identities=27% Similarity=0.231 Sum_probs=42.9 Q ss_pred HHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEEEEECC Q ss_conf 210028975999920045738899999999978997899999983068 Q gi|254780309|r 11 VSKHVAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILTFSRSLK 58 (59) Q Consensus 11 ~~~~i~gk~vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~~lar~~~ 58 (59) +..+++||+++||||+++|+.|+..+++.|.++||++|+.++-+-..+ T Consensus 208 LVGDv~gkvaIlVDDm~dt~GTl~~aa~~L~~~GA~kV~a~~THgVfs 255 (316) T KOG1448 208 LVGDVKGKVAILVDDMADTCGTLIKAADKLLEHGAKKVYAIVTHGVFS 255 (316) T ss_pred EEECCCCCEEEEECCCCCCCCHHHHHHHHHHHCCCCEEEEEECCEECC T ss_conf 985367868999436411364199999999865874599997132226 No 46 >PRK06388 amidophosphoribosyltransferase; Provisional Probab=98.51 E-value=1.1e-07 Score=62.96 Aligned_cols=48 Identities=25% Similarity=0.372 Sum_probs=42.8 Q ss_pred HHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEEEEEC Q ss_conf 021002897599992004573889999999997899789999998306 Q gi|254780309|r 10 YVSKHVAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILTFSRSL 57 (59) Q Consensus 10 ~~~~~i~gk~vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~~lar~~ 57 (59) +.+..++||.|+||||.|.+|+|+..+++.|+++||++|++..-+..+ T Consensus 349 ~i~~~i~gK~vvlVDDSIVRGtT~k~iv~~Lr~aGAkeVh~ri~sPpi 396 (474) T PRK06388 349 PIREVISGKRIVLVDDSIVRGNTMRFIVKIMRKYGAKEVHVRIGSPHI 396 (474) T ss_pred EEEEEECCCEEEEECCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCC T ss_conf 502441798899981661656679999999997799889999789996 No 47 >PRK07847 amidophosphoribosyltransferase; Provisional Probab=98.51 E-value=1.3e-07 Score=62.54 Aligned_cols=49 Identities=24% Similarity=0.398 Sum_probs=43.4 Q ss_pred HHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEEEEECC Q ss_conf 0210028975999920045738899999999978997899999983068 Q gi|254780309|r 10 YVSKHVAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILTFSRSLK 58 (59) Q Consensus 10 ~~~~~i~gk~vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~~lar~~~ 58 (59) +.+..++||+|+||||.|.+|+|+..+++.|+++||++|++..-+..++ T Consensus 335 ~i~~~i~gK~vvlVDDSIVRGtT~k~iv~~Lr~aGAkeVh~riasPpi~ 383 (489) T PRK07847 335 PLREVIRGKRLVVVDDSIVRGNTQRALVRMLREAGAAEVHVRIASPPVK 383 (489) T ss_pred CCHHEECCCEEEEECCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCC T ss_conf 0264177987999847835667799999999976998899996899857 No 48 >PRK05205 bifunctional pyrimidine regulatory protein PyrR uracil phosphoribosyltransferase; Provisional Probab=98.49 E-value=2.5e-07 Score=61.02 Aligned_cols=44 Identities=30% Similarity=0.430 Sum_probs=40.0 Q ss_pred HHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHCC-CCEEEEEEEE Q ss_conf 2100289759999200457388999999999789-9789999998 Q gi|254780309|r 11 VSKHVAGLKILLIDDVYTTGATAKCAAIALKKAG-AMTVSILTFS 54 (59) Q Consensus 11 ~~~~i~gk~vliVDDiitTG~T~~~~~~~L~~~g-a~~V~~~~la 54 (59) .+.+++||+|+|||||+.||.|+.++.+.|...| |++|..++|. T Consensus 89 i~~~~~gk~ViLVDDVL~TGrTlraal~~l~~~grP~~I~lavLV 133 (176) T PRK05205 89 IPFDIEGKTVILVDDVLYTGRTIRAALDALFDYGRPARVQLAVLV 133 (176) T ss_pred CCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEEEEE T ss_conf 764447888999831022368999999988636988679999999 No 49 >KOG0572 consensus Probab=98.45 E-value=2e-07 Score=61.50 Aligned_cols=49 Identities=29% Similarity=0.409 Sum_probs=43.4 Q ss_pred HHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEEEEECC Q ss_conf 0210028975999920045738899999999978997899999983068 Q gi|254780309|r 10 YVSKHVAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILTFSRSLK 58 (59) Q Consensus 10 ~~~~~i~gk~vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~~lar~~~ 58 (59) +++..++||.|+||||.|..|+|+..+++.|+++||++|++...+..++ T Consensus 349 ~l~~~~~GKrvvlVDDSIVRGtTs~~IVkmlreaGAkeVh~riAsPpi~ 397 (474) T KOG0572 349 PLRQNFEGKRVVLVDDSIVRGTTSSPIVKMLREAGAKEVHIRIASPPIK 397 (474) T ss_pred CCHHHCCCCEEEEEECCEECCCCHHHHHHHHHHCCCCEEEEEECCCCCC T ss_conf 3234407856999736542267538999999875885789882188644 No 50 >TIGR01134 purF amidophosphoribosyltransferase; InterPro: IPR005854 Purine nucleotides are synthesised both via the de novo pathway and via the salvage pathway and are vital for cell functions and cell proliferation through DNA and RNA syntheses and ATP energy supply. Amidophosphoribosyltransferase (2.4.2.14 from EC) is the rate-limiting enzyme in the de novo pathway of purine ribonucleotide synthesis and is regulated by feedback inhibition by AMP and GMP .5-phospho-beta-D-ribosylamine + diphosphate + L-glutamate = L-glutamine + 5-phospho-alpha-D-ribose 1-diphosphate + H2O This family contains sequences which are members of the MEROPS peptidase family C44 (glutamine phosphoribosylpyrophosphate amidotransferase precursor, clan PB(C)) and sequences which are classed as non-peptidase homologs. These are sequences either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity. ; GO: 0004044 amidophosphoribosyltransferase activity, 0009113 purine base biosynthetic process. Probab=98.44 E-value=2.2e-07 Score=61.34 Aligned_cols=46 Identities=30% Similarity=0.403 Sum_probs=40.7 Q ss_pred HHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEEEE Q ss_conf 0210028975999920045738899999999978997899999983 Q gi|254780309|r 10 YVSKHVAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILTFSR 55 (59) Q Consensus 10 ~~~~~i~gk~vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~~lar 55 (59) +.+..++||.|+||||.|-.|+|.+.+++.|+++||++|++-.-|. T Consensus 353 P~r~~~~GkrVvlVDDSiVRGTTSr~vV~mlR~AGA~EVH~riasP 398 (467) T TIGR01134 353 PVRSVVEGKRVVLVDDSIVRGTTSRQVVEMLRDAGAREVHVRIASP 398 (467) T ss_pred CCHHHHCCCEEEEEECCEECCCHHHHHHHHHHHCCCEEEEEEECCC T ss_conf 4303336975899942412071378999999872983898762588 No 51 >KOG3367 consensus Probab=98.39 E-value=4.6e-07 Score=59.61 Aligned_cols=48 Identities=17% Similarity=0.241 Sum_probs=43.6 Q ss_pred ECCHHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEEE Q ss_conf 251021002897599992004573889999999997899789999998 Q gi|254780309|r 7 VPQYVSKHVAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILTFS 54 (59) Q Consensus 7 i~~~~~~~i~gk~vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~~la 54 (59) +..+....+.||+|+|||||++||.||......+++.+++.+.+++|. T Consensus 115 ig~d~l~~ltgK~VliVeDIvdTGrTl~~Lls~~~~~k~~~v~vasLL 162 (216) T KOG3367 115 IGGDDLSTLTGKNVLIVEDIVDTGRTLSTLLSHMKAYKPSMVKVASLL 162 (216) T ss_pred ECCCCHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEEEC T ss_conf 647877773577289997401356107899998886086311432200 No 52 >PRK07322 adenine phosphoribosyltransferase; Provisional Probab=98.35 E-value=9.4e-07 Score=57.92 Aligned_cols=44 Identities=20% Similarity=0.378 Sum_probs=39.0 Q ss_pred HHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEEE Q ss_conf 21002897599992004573889999999997899789999998 Q gi|254780309|r 11 VSKHVAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILTFS 54 (59) Q Consensus 11 ~~~~i~gk~vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~~la 54 (59) ....++|++|+||||++.||.|+.++.+.+++.|+..+.++++- T Consensus 114 ~~~~l~G~rVlivDDvi~tGgt~~a~~~l~~~~Ga~vvg~~ai~ 157 (178) T PRK07322 114 DAEKLKGKRVAIVDDVVSTGGSLTAMERLVERAGGEVVAKAAIL 157 (178) T ss_pred HHHHCCCCEEEEEEEHHHCCHHHHHHHHHHHHCCCEEEEEEEEE T ss_conf 22113798599996344238379999999998699899999999 No 53 >COG2236 Predicted phosphoribosyltransferases [General function prediction only] Probab=98.26 E-value=5.3e-07 Score=59.26 Aligned_cols=47 Identities=30% Similarity=0.406 Sum_probs=37.4 Q ss_pred ECCHHHHC-CCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEE Q ss_conf 25102100-289759999200457388999999999789978999999 Q gi|254780309|r 7 VPQYVSKH-VAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILTF 53 (59) Q Consensus 7 i~~~~~~~-i~gk~vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~~l 53 (59) +..+...+ +.||+|||||||.|||.||..+.+.|++..+..+..+++ T Consensus 76 v~~~~~~d~l~GkkVLIVDDI~DTG~Tl~~a~~~l~~~~p~e~rta~l 123 (192) T COG2236 76 VKYPITIDPLSGKKVLIVDDIVDTGETLELALEELKKLAPAEVRTAVL 123 (192) T ss_pred EECCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCHHHHHHHH T ss_conf 612765465589858998233376176999999998537066644333 No 54 >PRK02304 adenine phosphoribosyltransferase; Provisional Probab=98.21 E-value=2.6e-06 Score=55.57 Aligned_cols=40 Identities=30% Similarity=0.428 Sum_probs=37.5 Q ss_pred CCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEEE Q ss_conf 2897599992004573889999999997899789999998 Q gi|254780309|r 15 VAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILTFS 54 (59) Q Consensus 15 i~gk~vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~~la 54 (59) -+|.+|+||||++.||.|+.++.+.+++.|++.+.++++. T Consensus 111 ~~g~~VlivDDvlaTGGT~~a~~~Lv~~~ga~v~~~~~li 150 (174) T PRK02304 111 KPGDRVLIVDDLLATGGTLEAAIKLLERLGAEVVGAAFVI 150 (174) T ss_pred CCCCEEEEEEEHHHHCHHHHHHHHHHHHCCCEEEEEEEEE T ss_conf 8999999997154307179999999998799899999999 No 55 >PRK13811 orotate phosphoribosyltransferase; Provisional Probab=98.20 E-value=2.8e-06 Score=55.37 Aligned_cols=41 Identities=37% Similarity=0.566 Sum_probs=37.6 Q ss_pred CCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEEE Q ss_conf 02897599992004573889999999997899789999998 Q gi|254780309|r 14 HVAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILTFS 54 (59) Q Consensus 14 ~i~gk~vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~~la 54 (59) .++|++|++|||++|||.+..++++.++++|+..+.++++. T Consensus 101 ~~~G~~VlvVEDViTTG~S~~e~i~~l~~~G~~V~~v~~iv 141 (170) T PRK13811 101 DVAGKRVLLVEDVTTSGGSALYGIEQLRSAGAVVDDVVTVV 141 (170) T ss_pred CCCCCEEEEEEEEECCCCCHHHHHHHHHHCCCEEEEEEEEE T ss_conf 34899899999644578118999999998899799999999 No 56 >PRK00455 pyrE orotate phosphoribosyltransferase; Validated Probab=98.18 E-value=2.6e-06 Score=55.55 Aligned_cols=41 Identities=32% Similarity=0.500 Sum_probs=38.0 Q ss_pred CCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEEEE Q ss_conf 28975999920045738899999999978997899999983 Q gi|254780309|r 15 VAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILTFSR 55 (59) Q Consensus 15 i~gk~vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~~lar 55 (59) .+|++|+||||++|||.+..++++.++++|+..+.++++.- T Consensus 109 ~~g~~VliVeDViTtG~S~~~ai~~l~~~G~~V~~v~vivD 149 (200) T PRK00455 109 LKGKRVLVVEDVITTGGSVLEAVEAIRAAGAEVVGVAVIVD 149 (200) T ss_pred CCCCCEEEEEEHHHCCCCHHHHHHHHHHCCCEEEEEEEEEE T ss_conf 55453488763010470199999999987997999999995 No 57 >COG0461 PyrE Orotate phosphoribosyltransferase [Nucleotide transport and metabolism] Probab=98.16 E-value=4.5e-06 Score=54.24 Aligned_cols=40 Identities=38% Similarity=0.524 Sum_probs=37.6 Q ss_pred CCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEEE Q ss_conf 2897599992004573889999999997899789999998 Q gi|254780309|r 15 VAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILTFS 54 (59) Q Consensus 15 i~gk~vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~~la 54 (59) .+|+.|++|||++|||.++.++++.++++|+..+.++++. T Consensus 110 ~~G~kVvvVEDViTTG~Si~eai~~l~~~G~~V~gv~~iv 149 (201) T COG0461 110 VKGEKVVVVEDVITTGGSILEAVEALREAGAEVVGVAVIV 149 (201) T ss_pred CCCCEEEEEEECCCCCHHHHHHHHHHHHCCCEEEEEEEEE T ss_conf 8998999997201678769999999998698598999999 No 58 >TIGR01367 pyrE_Therm orotate phosphoribosyltransferase; InterPro: IPR006273 This group of sequences are a distinct clade of orotate phosphoribosyltransferases. Members include the experimentally determined example from Thermus aquaticus and additional examples from Caulobacter crescentus, Helicobacter pylori (Campylobacter pylori), Mesorhizobium loti, and related species. ; GO: 0004588 orotate phosphoribosyltransferase activity, 0019856 pyrimidine base biosynthetic process. Probab=98.16 E-value=3.6e-06 Score=54.78 Aligned_cols=51 Identities=22% Similarity=0.335 Sum_probs=41.2 Q ss_pred CEEEECCHHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEEE Q ss_conf 6088251021002897599992004573889999999997899789999998 Q gi|254780309|r 3 NAFNVPQYVSKHVAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILTFS 54 (59) Q Consensus 3 gaf~i~~~~~~~i~gk~vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~~la 54 (59) |.|++.+.+.-+ .|..+++|+||+|||.++.++++.+++.|+..|-++|+. T Consensus 98 g~mkLRrgF~v~-pGek~v~vEDvvTTGGS~~e~~~~i~~~GG~vvg~a~ii 148 (205) T TIGR01367 98 GGMKLRRGFEVK-PGEKVVVVEDVVTTGGSLLEAIKAIEELGGQVVGLACII 148 (205) T ss_pred CCCEECCCEEEC-CCCEEEEEEEEECCCHHHHHHHHHHHHCCCCEEEEEEHH T ss_conf 752011120336-997799996211047448999999985798279842112 No 59 >PRK13812 orotate phosphoribosyltransferase; Provisional Probab=98.15 E-value=3.8e-06 Score=54.64 Aligned_cols=39 Identities=33% Similarity=0.487 Sum_probs=36.7 Q ss_pred CCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEEE Q ss_conf 897599992004573889999999997899789999998 Q gi|254780309|r 16 AGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILTFS 54 (59) Q Consensus 16 ~gk~vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~~la 54 (59) +|++|+||||++|||.+..++++.+++.|+..+.++|+. T Consensus 106 ~g~rVlivEDViTTG~S~~eai~~l~~~G~~V~~v~viv 144 (174) T PRK13812 106 DGEEVVVLEDIATTGQSAVDAVEALRDAGATVNRVLVVV 144 (174) T ss_pred CCCEEEEEEEEECCCCCHHHHHHHHHHCCCEEEEEEEEE T ss_conf 786699998644578019999999998799799999999 No 60 >TIGR01091 upp uracil phosphoribosyltransferase; InterPro: IPR005765 The enzyme uracil phosphoribosyltransferase (UPRT, 2.4.2.9 from EC) catalyzes conversion of uracil to uridine 5'-monophosphate utilizing 5'-phosphoribosyl--1-pyrophosphate (PRPP).UMP + diphosphate = uracil + 5-phospho-alpha-D-ribose 1-diphosphate ; GO: 0004845 uracil phosphoribosyltransferase activity, 0006223 uracil salvage. Probab=98.12 E-value=5.3e-06 Score=53.86 Aligned_cols=50 Identities=22% Similarity=0.327 Sum_probs=44.1 Q ss_pred CCHHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEEEEEC Q ss_conf 51021002897599992004573889999999997899789999998306 Q gi|254780309|r 8 PQYVSKHVAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILTFSRSL 57 (59) Q Consensus 8 ~~~~~~~i~gk~vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~~lar~~ 57 (59) ...++.++.+++++|+|.|+-||.|+.++.+.|+++|+++|.++++-.+. T Consensus 119 y~KLP~~~~~~~v~v~DPMLATGgt~~~a~~~lk~~g~~~I~~~~~vAAP 168 (213) T TIGR01091 119 YSKLPEDIDERTVIVLDPMLATGGTMIAALDLLKKRGAKKIKVLSIVAAP 168 (213) T ss_pred CCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCCEEEEEEEECH T ss_conf 20054346888699972873430589999999985399944999998255 No 61 >PRK13809 orotate phosphoribosyltransferase; Provisional Probab=98.12 E-value=5.5e-06 Score=53.77 Aligned_cols=40 Identities=28% Similarity=0.453 Sum_probs=36.7 Q ss_pred CCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEEE Q ss_conf 2897599992004573889999999997899789999998 Q gi|254780309|r 15 VAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILTFS 54 (59) Q Consensus 15 i~gk~vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~~la 54 (59) .+|+.|++|||++|||.++.++++.|++.|+....++++- T Consensus 116 ~~G~kVvvIEDViTTGgSil~ai~~lr~~G~~V~~v~viv 155 (206) T PRK13809 116 TPGQTCLVINDMVSSGKSIIETAVALEENGLVVREALVFL 155 (206) T ss_pred CCCCEEEEEEEEECCCHHHHHHHHHHHHCCCEEEEEEEEE T ss_conf 8998899997334468009999999998799699999999 No 62 >PRK13810 orotate phosphoribosyltransferase; Provisional Probab=98.11 E-value=5.1e-06 Score=53.96 Aligned_cols=40 Identities=25% Similarity=0.430 Sum_probs=36.8 Q ss_pred CCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEEE Q ss_conf 2897599992004573889999999997899789999998 Q gi|254780309|r 15 VAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILTFS 54 (59) Q Consensus 15 i~gk~vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~~la 54 (59) -+|.+|++|||++|||.++.++++.+++.|+..+.++++. T Consensus 120 ~~g~rVlvVEDViTTGgS~~eai~~l~~~G~~V~~v~~iv 159 (187) T PRK13810 120 KPEDRIVMLEDVTTSGGSVRDAIEVVREAGAIVKYVITVV 159 (187) T ss_pred CCCCEEEEEEEEECCCCCHHHHHHHHHHCCCEEEEEEEEE T ss_conf 7998899998543568239999999998899799999999 No 63 >PRK12560 adenine phosphoribosyltransferase; Provisional Probab=98.09 E-value=7.1e-06 Score=53.17 Aligned_cols=39 Identities=26% Similarity=0.451 Sum_probs=36.7 Q ss_pred CCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEEE Q ss_conf 897599992004573889999999997899789999998 Q gi|254780309|r 16 AGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILTFS 54 (59) Q Consensus 16 ~gk~vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~~la 54 (59) +|.+|+||||+++||.|+.++.+.+++.|+.-+.++++- T Consensus 110 ~GdrVlIVDDvlaTGGTl~a~~~ll~~~Ga~V~~i~~vI 148 (184) T PRK12560 110 AGDRVAIIDDTLSTGGTVIALIKAIQNSGGIVKDLICAV 148 (184) T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEEEEE T ss_conf 999899995120567589999999998699899999999 No 64 >PRK05500 bifunctional orotidine 5'-phosphate decarboxylase/orotate phosphoribosyltransferase protein; Validated Probab=98.08 E-value=8e-06 Score=52.90 Aligned_cols=40 Identities=30% Similarity=0.434 Sum_probs=36.8 Q ss_pred CCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEEE Q ss_conf 2897599992004573889999999997899789999998 Q gi|254780309|r 15 VAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILTFS 54 (59) Q Consensus 15 i~gk~vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~~la 54 (59) .+|+.|+|||||+|||.++.++++.|++.|++...++++- T Consensus 391 ~~G~~vlIIdDViTsG~Si~e~i~~L~~~G~~V~~~vV~l 430 (478) T PRK05500 391 HPGETVVVVDDILITGKSVMEGAEKLKSAGLNVRDIVVFI 430 (478) T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEEEEE T ss_conf 8998899996012677879999999998799387799999 No 65 >TIGR00336 pyrE orotate phosphoribosyltransferase; InterPro: IPR004467 Orotate phosphoribosyl transferase (OPRTase) is involved in the biosynthesis of pyrimidine nucleotides. Alpha-D-ribosyldiphosphate 5-phosphate (PRPP) and orotate are utilised to form pyrophosphate and orotidine 5 -monophosphate (OMP) in the presence of divalent cations, preferably Mg2+. In a number of eukaryotes, this protein is fused to a domain that catalyses the reaction (4.1.1.23 from EC). The combined activity of 2.4.2.10 from EC and 4.1.1.23 from EC is termed uridine 5 -monophosphate synthase. The conserved Lys (K) residue at position 101 of the seed alignment has been proposed as the active site for the enzyme.; GO: 0004588 orotate phosphoribosyltransferase activity, 0006221 pyrimidine nucleotide biosynthetic process. Probab=98.06 E-value=7.5e-06 Score=53.03 Aligned_cols=41 Identities=27% Similarity=0.447 Sum_probs=36.9 Q ss_pred CCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEEE Q ss_conf 02897599992004573889999999997899789999998 Q gi|254780309|r 14 HVAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILTFS 54 (59) Q Consensus 14 ~i~gk~vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~~la 54 (59) -.+|+.|+||||++|||..+.++.+.+.++|+.-..++++- T Consensus 114 ~~eG~kvvvveDV~TtG~s~~~A~~~i~~ag~~V~~v~~~v 154 (187) T TIGR00336 114 LLEGDKVVVVEDVITTGGSILEAVEAIQEAGGEVAGVIVIV 154 (187) T ss_pred CCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCEEEEEEEEE T ss_conf 57896389995143424799999999986188899999998 No 66 >COG0503 Apt Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins [Nucleotide transport and metabolism] Probab=98.04 E-value=1.3e-05 Score=51.76 Aligned_cols=41 Identities=32% Similarity=0.405 Sum_probs=38.0 Q ss_pred CCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEEEEE Q ss_conf 89759999200457388999999999789978999999830 Q gi|254780309|r 16 AGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILTFSRS 56 (59) Q Consensus 16 ~gk~vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~~lar~ 56 (59) .|.+|+||||++.||.|+.+..+.+.++|+.-+.+.++-.- T Consensus 115 ~G~rVlIVDDllaTGgT~~a~~~Ll~~~ga~vvg~~~~ie~ 155 (179) T COG0503 115 PGDRVLIVDDLLATGGTALALIELLEQAGAEVVGAAFVIEL 155 (179) T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEEEEEEE T ss_conf 99989999654015678999999999889989999999972 No 67 >PRK06031 phosphoribosyltransferase; Provisional Probab=97.99 E-value=1.5e-05 Score=51.47 Aligned_cols=49 Identities=24% Similarity=0.300 Sum_probs=42.6 Q ss_pred EEECCHHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEE Q ss_conf 8825102100289759999200457388999999999789978999999 Q gi|254780309|r 5 FNVPQYVSKHVAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILTF 53 (59) Q Consensus 5 f~i~~~~~~~i~gk~vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~~l 53 (59) .-+.+...+-++||.|+||||++.||+|+.+..+.|...|+.-+.+.+. T Consensus 142 lylDp~~lpLl~GrRV~lVDDVISSG~Si~a~l~LL~~~G~e~v~igva 190 (233) T PRK06031 142 LYIDPRMLPLLRGRRVALIDDVISSGASIVAALRLLATCGIEPAGIGAA 190 (233) T ss_pred EEECHHHHHHHCCCEEEEEECHHCCCHHHHHHHHHHHHCCCCEEEEEEE T ss_conf 5677444124328779998212215565999999999759973788763 No 68 >COG1926 Predicted phosphoribosyltransferases [General function prediction only] Probab=97.97 E-value=1.2e-05 Score=51.86 Aligned_cols=42 Identities=33% Similarity=0.438 Sum_probs=38.5 Q ss_pred HHCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEE Q ss_conf 100289759999200457388999999999789978999999 Q gi|254780309|r 12 SKHVAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILTF 53 (59) Q Consensus 12 ~~~i~gk~vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~~l 53 (59) ..+++||.|+||||=+-||+||..+++.++.+++++|.+++= T Consensus 119 ~~~~~g~~VIlVDDGiATGatm~aAi~~~r~~~~~~IviAVP 160 (220) T COG1926 119 VPSLKGRTVILVDDGIATGATMKAAVRALRAKGPKEIVIAVP 160 (220) T ss_pred CCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEECC T ss_conf 878888989997077212077999999998628860899844 No 69 >PRK00129 upp uracil phosphoribosyltransferase; Reviewed Probab=97.89 E-value=2.4e-05 Score=50.32 Aligned_cols=48 Identities=21% Similarity=0.370 Sum_probs=42.8 Q ss_pred CHHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEEEEE Q ss_conf 102100289759999200457388999999999789978999999830 Q gi|254780309|r 9 QYVSKHVAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILTFSRS 56 (59) Q Consensus 9 ~~~~~~i~gk~vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~~lar~ 56 (59) ..++.++.+++|+|+|.++.||.|+..+.+.|+++|++++.++++-.+ T Consensus 115 ~kLP~~i~~~~VlllDPmlATG~s~~~ai~~L~~~G~~~I~~v~~ias 162 (208) T PRK00129 115 EKLPSDIDERTVIVVDPMLATGGSMIAAIDLLKKRGAKRIKVLCLVAA 162 (208) T ss_pred HHCCCCCCCCEEEEECCHHHCCHHHHHHHHHHHHCCCCEEEEEEEEEC T ss_conf 328644466879987855643766999999999669973899999964 No 70 >TIGR01251 ribP_PPkin ribose-phosphate pyrophosphokinase; InterPro: IPR005946 Synonyms: phosphoribosylpyrophosphate synthetase Phosphoribosyldiphosphate synthetase (PRPPsase, 2.7.6.1 from EC) catalyzes the transfer of an intact diphosphate (PP) group from ATP to ribose-5-phosphate (R-5-P), which results in the formation of AMP and 5-phospho-D-ribosyl--1-diphosphate (PRPP).ATP + D-ribose 5-phosphate = AMP + 5-phospho-alpha-D-ribose 1-diphosphate PRPP is an essential precursor for purine and pyrimidine nucleotides, both in the de novo synthesis and in the salvage pathway as well as in the synthesis of pyridine nucleotide coenzymes. The activity of PRPPsase is highly regulated. Besides competitive inhibition at the substrate binding sites, most PRPPsases are regulated in an allosteric manner, in which ADP generally acts as the most potent inhibitor. In some systems, close homologs lacking enzymatic activity exist and perform regulatory functions.; GO: 0000287 magnesium ion binding, 0004749 ribose phosphate diphosphokinase activity, 0009165 nucleotide biosynthetic process. Probab=97.76 E-value=4.4e-05 Score=48.89 Aligned_cols=49 Identities=31% Similarity=0.334 Sum_probs=43.7 Q ss_pred HHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEEEEECC Q ss_conf 0210028975999920045738899999999978997899999983068 Q gi|254780309|r 10 YVSKHVAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILTFSRSLK 58 (59) Q Consensus 10 ~~~~~i~gk~vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~~lar~~~ 58 (59) ....+++||.++++||+++||.|+..+.+.|++.|+++++..+...... T Consensus 205 ~~~~~~~g~~~~~~dd~~~~gg~~~~~~~~l~~~g~~~~~~~~~h~~~~ 253 (316) T TIGR01251 205 PLLGDVEGKDVVLVDDIIDTGGTLVKAAELLKEKGAKKVYAAATHGVFS 253 (316) T ss_pred EEECCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEEECCHHC T ss_conf 1000236752788602100213589999998634844278765122002 No 71 >COG0035 Upp Uracil phosphoribosyltransferase [Nucleotide transport and metabolism] Probab=97.74 E-value=6.1e-05 Score=48.12 Aligned_cols=48 Identities=19% Similarity=0.358 Sum_probs=42.8 Q ss_pred HHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHC-CCCEEEEEEEEEEC Q ss_conf 0210028975999920045738899999999978-99789999998306 Q gi|254780309|r 10 YVSKHVAGLKILLIDDVYTTGATAKCAAIALKKA-GAMTVSILTFSRSL 57 (59) Q Consensus 10 ~~~~~i~gk~vliVDDiitTG~T~~~~~~~L~~~-ga~~V~~~~lar~~ 57 (59) .++.++++++++++|.++.||+|+..+.+.|+++ |++++.++++-.+. T Consensus 117 KLP~~~~~~~viv~DPMLATG~s~i~ai~~L~~~G~~~~I~~v~~vAap 165 (210) T COG0035 117 KLPEDIDERTVIVLDPMLATGGSAIAAIDLLKKRGGPKNIKVVSLVAAP 165 (210) T ss_pred HCCCCCCCCEEEEECCHHHCCHHHHHHHHHHHHHCCCCEEEEEEEEECH T ss_conf 5898646885999786141267699999999971897528999999648 No 72 >KOG1712 consensus Probab=97.64 E-value=9.5e-05 Score=47.09 Aligned_cols=39 Identities=28% Similarity=0.461 Sum_probs=35.9 Q ss_pred CCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEEE Q ss_conf 897599992004573889999999997899789999998 Q gi|254780309|r 16 AGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILTFS 54 (59) Q Consensus 16 ~gk~vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~~la 54 (59) .|.++++|||++.||.|+.++.+.+.+.|++-+-.+|+- T Consensus 121 ~g~rvvvVDDllATGGTl~AA~~Ll~r~ga~vvE~~~vi 159 (183) T KOG1712 121 PGQRVVVVDDLLATGGTLAAATELLERVGAEVVECACVI 159 (183) T ss_pred CCCEEEEEECHHHCCCCHHHHHHHHHHHCCEEEEEEEEE T ss_conf 987589983001137418999999997254788789999 No 73 >PRK08558 adenine phosphoribosyltransferase; Provisional Probab=97.50 E-value=0.00018 Score=45.55 Aligned_cols=40 Identities=25% Similarity=0.461 Sum_probs=37.0 Q ss_pred CCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEEEE Q ss_conf 8975999920045738899999999978997899999983 Q gi|254780309|r 16 AGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILTFSR 55 (59) Q Consensus 16 ~gk~vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~~lar 55 (59) +|-+||||||.+.||.|+..+.+.++++||.-+.+.++-- T Consensus 175 ~g~~VLIVDD~~~tG~T~~~~~~l~~~~ga~v~G~~~li~ 214 (238) T PRK08558 175 RGERVLIVDDIIRSGETQRALLELCRQAGADVVGVFFLIA 214 (238) T ss_pred CCCEEEEEHHHHHCCHHHHHHHHHHHHCCCEEEEEEEEEE T ss_conf 9986999835634373899999999986997999999998 No 74 >PRK09177 xanthine-guanine phosphoribosyltransferase; Validated Probab=97.49 E-value=8.9e-05 Score=47.22 Aligned_cols=35 Identities=29% Similarity=0.365 Sum_probs=27.7 Q ss_pred CCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEE Q ss_conf 0289759999200457388999999999789978999999 Q gi|254780309|r 14 HVAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILTF 53 (59) Q Consensus 14 ~i~gk~vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~~l 53 (59) ...||+|||||||.+||.|+..+.+.+.+ +.+++| T Consensus 81 ~~~gkkVLIVDDI~DTG~Tl~~vk~~~~~-----~~~Atl 115 (156) T PRK09177 81 EGDGEGFLVVDDLVDTGGTARAVREMYPK-----AHFATV 115 (156) T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHCCC-----CEEEEE T ss_conf 77786289995343663789999986788-----559999 No 75 >COG2065 PyrR Pyrimidine operon attenuation protein/uracil phosphoribosyltransferase [Nucleotide transport and metabolism] Probab=97.48 E-value=0.00024 Score=44.92 Aligned_cols=44 Identities=27% Similarity=0.456 Sum_probs=38.3 Q ss_pred HHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHCC-CCEEEEEEEE Q ss_conf 2100289759999200457388999999999789-9789999998 Q gi|254780309|r 11 VSKHVAGLKILLIDDVYTTGATAKCAAIALKKAG-AMTVSILTFS 54 (59) Q Consensus 11 ~~~~i~gk~vliVDDiitTG~T~~~~~~~L~~~g-a~~V~~~~la 54 (59) ...++.||.|+||||++-||.|+.++.+.|...| |.+|..++|. T Consensus 90 ~~~di~~k~VILVDDVLytGRTIRAAldal~d~GRPa~I~LavLV 134 (179) T COG2065 90 LPFDITGKRVILVDDVLYTGRTIRAALDALVDYGRPAKIQLAVLV 134 (179) T ss_pred CCCCCCCCEEEEEEEECCCCCCHHHHHHHHHHCCCCCEEEEEEEE T ss_conf 752446878999820111472499999999864985358999998 No 76 >PRK09219 xanthine phosphoribosyltransferase; Validated Probab=97.38 E-value=0.00032 Score=44.24 Aligned_cols=39 Identities=26% Similarity=0.287 Sum_probs=35.8 Q ss_pred CCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEEE Q ss_conf 897599992004573889999999997899789999998 Q gi|254780309|r 16 AGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILTFS 54 (59) Q Consensus 16 ~gk~vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~~la 54 (59) +|-+||||||.+.||.|+....+.++++||.-+.+.++- T Consensus 116 ~gdrVliIDDflatGgt~~~~~~l~~~~ga~v~g~~~vi 154 (189) T PRK09219 116 EEDKVLIIDDFLANGQAALGLIDIIEQAGAEVAGVGIVI 154 (189) T ss_pred CCCEEEEEHHHHHCCHHHHHHHHHHHHCCCEEEEEEEEE T ss_conf 987599874545446789999999998799899999999 No 77 >KOG1503 consensus Probab=96.58 E-value=0.0033 Score=38.77 Aligned_cols=46 Identities=24% Similarity=0.327 Sum_probs=41.1 Q ss_pred HCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEEEEECC Q ss_conf 0028975999920045738899999999978997899999983068 Q gi|254780309|r 13 KHVAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILTFSRSLK 58 (59) Q Consensus 13 ~~i~gk~vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~~lar~~~ 58 (59) .++-||--++|||+++---.+.++++.|++.||-++++.+....++ T Consensus 243 gdvggriaimvddiiddvqsfvaaae~lkergaykiyv~athglls 288 (354) T KOG1503 243 GDVGGRIAIMVDDIIDDVQSFVAAAEVLKERGAYKIYVMATHGLLS 288 (354) T ss_pred ECCCCEEEEEEHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCC T ss_conf 2268658998533577699999999999855855899986045345 No 78 >PRK09213 purine operon repressor; Provisional Probab=95.00 E-value=0.059 Score=31.99 Aligned_cols=43 Identities=26% Similarity=0.311 Sum_probs=39.0 Q ss_pred CCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEEEEEC Q ss_conf 2897599992004573889999999997899789999998306 Q gi|254780309|r 15 VAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILTFSRSL 57 (59) Q Consensus 15 i~gk~vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~~lar~~ 57 (59) =+|.+||||||-+--|.|+.-..+.+++.+|.-+.+-++.-+. T Consensus 194 ~~gsrVLiIDDFmk~Ggt~~Gm~~L~~Ef~a~vvGigV~ie~~ 236 (274) T PRK09213 194 KEGSNVLIVDDFMKAGGTINGMISLLKEFDAEVVGIGVLVENK 236 (274) T ss_pred CCCCEEEEECHHHHCCCHHHHHHHHHHHCCCEEEEEEEEEECC T ss_conf 9998399983454476088999999997198797899999548 No 79 >KOG1017 consensus Probab=94.39 E-value=0.11 Score=30.54 Aligned_cols=47 Identities=19% Similarity=0.307 Sum_probs=39.0 Q ss_pred ECCHHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCC--EEEEEEE Q ss_conf 2510210028975999920045738899999999978997--8999999 Q gi|254780309|r 7 VPQYVSKHVAGLKILLIDDVYTTGATAKCAAIALKKAGAM--TVSILTF 53 (59) Q Consensus 7 i~~~~~~~i~gk~vliVDDiitTG~T~~~~~~~L~~~ga~--~V~~~~l 53 (59) +...++++|.-|.||+.=.++.||.|+..+.+.|+++|.. .++.+.| T Consensus 179 ~YArfppDI~sR~VLLmYPi~stGnTV~~Av~VL~EhgVp~s~IiL~sL 227 (267) T KOG1017 179 LYARFPPDITSRRVLLMYPIISTGNTVCKAVEVLKEHGVPDSNIILVSL 227 (267) T ss_pred EEEECCCCCCCEEEEEEEEEECCCCCHHHHHHHHHHCCCCCCEEEEEEE T ss_conf 8774698523216899841304781389999999981999600898774 No 80 >TIGR01743 purR_Bsub pur operon repressor; InterPro: IPR010078 This entry represents the pur operon repressor PurR of low-GC Gram-positive bacteria. This homodimeric repressor contains a large region homologous to phosphoribosyltransferases and is inhibited by 5-phosphoribosyl 1-pyrophosphate.; GO: 0003677 DNA binding, 0016564 transcription repressor activity, 0016481 negative regulation of transcription, 0045982 negative regulation of purine base metabolic process. Probab=93.81 E-value=0.095 Score=30.88 Aligned_cols=42 Identities=29% Similarity=0.313 Sum_probs=38.8 Q ss_pred CCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEEEEEC Q ss_conf 897599992004573889999999997899789999998306 Q gi|254780309|r 16 AGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILTFSRSL 57 (59) Q Consensus 16 ~gk~vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~~lar~~ 57 (59) +|-+||||||=+--|.|++-.++.|+|-.+.-+.+.+|.-+- T Consensus 194 ~GS~vL~vDDFmkaGGT~~Gm~~LL~EFda~l~GiGVli~~~ 235 (269) T TIGR01743 194 KGSKVLIVDDFMKAGGTVKGMIELLKEFDAELAGIGVLIDNE 235 (269) T ss_pred HCCEEEEEECCCCCCCCHHHHHHHHHHHCCCCEEEEEEEECC T ss_conf 089089995355548702678888876271102322133235 No 81 >TIGR01744 XPRTase xanthine phosphoribosyltransferase; InterPro: IPR010079 This entry represent a xanthine-specific phosphoribosyltransferase of Bacillus subtilis and closely related proteins from other species, mostly from other Gram-positive bacteria. The adjacent gene is a xanthine transporter; Bacillus subtilis can import xanthine for the purine salvage pathway or for catabolism to obtain nitrogen.; GO: 0016763 transferase activity transferring pentosyl groups, 0043101 purine salvage, 0046110 xanthine metabolic process. Probab=90.54 E-value=0.48 Score=27.08 Aligned_cols=45 Identities=24% Similarity=0.257 Sum_probs=35.5 Q ss_pred EECCHHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEE Q ss_conf 82510210028975999920045738899999999978997899999 Q gi|254780309|r 6 NVPQYVSKHVAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILT 52 (59) Q Consensus 6 ~i~~~~~~~i~gk~vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~~ 52 (59) .+..++.. ..-+||+|||=+-.|.+..-+.+..+++||+-+.+=+ T Consensus 108 ~vS~~fL~--~~D~vl~IDDFLA~G~a~~gL~~i~~qA~A~~~G~G~ 152 (191) T TIGR01744 108 IVSKEFLS--DQDRVLIIDDFLANGDAARGLVDIAEQAGAKIAGIGI 152 (191) T ss_pred EEECCCCC--CCCEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEE T ss_conf 98614378--9988999951346661678899999861995885447 No 82 >pfam01488 Shikimate_DH Shikimate / quinate 5-dehydrogenase. This family contains both shikimate and quinate dehydrogenases. Shikimate 5-dehydrogenase catalyses the conversion of shikimate to 5-dehydroshikimate. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites 3-dehydroquinate and dehydroshikimate. Probab=80.53 E-value=3.7 Score=22.30 Aligned_cols=41 Identities=32% Similarity=0.431 Sum_probs=34.0 Q ss_pred CCHHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEE Q ss_conf 510210028975999920045738899999999978997899999 Q gi|254780309|r 8 PQYVSKHVAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILT 52 (59) Q Consensus 8 ~~~~~~~i~gk~vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~~ 52 (59) .+..-.+++||++++|- +|..-..+++.|.+.|+++|+++. T Consensus 3 a~~~~~~l~~~~vlVIG----aG~~~~~~~~~L~~~g~~~i~v~n 43 (134) T pfam01488 3 AKKIFGDLKGKKVLLIG----AGEMARLAAKHLLSKGAKKITIAN 43 (134) T ss_pred HHHHHCCCCCCEEEEEC----CCHHHHHHHHHHHHCCCCEEEEEC T ss_conf 77763881489899999----609999999999975998899954 No 83 >cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann Probab=72.84 E-value=8.6 Score=20.30 Aligned_cols=36 Identities=31% Similarity=0.544 Sum_probs=31.1 Q ss_pred HCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEE Q ss_conf 0028975999920045738899999999978997899999 Q gi|254780309|r 13 KHVAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILT 52 (59) Q Consensus 13 ~~i~gk~vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~~ 52 (59) .++++|+|+|+- +|.+...++..|.+.|+++|+++. T Consensus 15 ~~~~~k~vlIlG----aGGaarai~~aL~~~g~~~I~i~n 50 (155) T cd01065 15 IELKGKKVLILG----AGGAARAVAYALAELGAAKIVIVN 50 (155) T ss_pred CCCCCCEEEEEC----CCHHHHHHHHHHHHCCCCEEEEEE T ss_conf 985799999986----758999999999971998228860 No 84 >PRK13940 glutamyl-tRNA reductase; Provisional Probab=64.06 E-value=7.6 Score=20.61 Aligned_cols=40 Identities=10% Similarity=0.180 Sum_probs=33.0 Q ss_pred CCHHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEE Q ss_conf 51021002897599992004573889999999997899789999 Q gi|254780309|r 8 PQYVSKHVAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSIL 51 (59) Q Consensus 8 ~~~~~~~i~gk~vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~ 51 (59) ......++.+|++++|. +|.+-..+++.|.+.|++.+.+. T Consensus 172 a~~~~~~l~~~~vlvvG----aGem~~l~~k~L~~~g~~~i~v~ 211 (414) T PRK13940 172 AKRQLDNISSKNVLIIG----AGQTGELLFRHVTALAPKQIMLA 211 (414) T ss_pred HHHHCCCCCCCEEEEEC----CCHHHHHHHHHHHHCCCCEEEEE T ss_conf 99862871228389966----86478999999997699879994 No 85 >PRK00045 hemA glutamyl-tRNA reductase; Reviewed Probab=62.94 E-value=8.3 Score=20.40 Aligned_cols=40 Identities=20% Similarity=0.380 Sum_probs=33.0 Q ss_pred CHHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEE Q ss_conf 10210028975999920045738899999999978997899999 Q gi|254780309|r 9 QYVSKHVAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILT 52 (59) Q Consensus 9 ~~~~~~i~gk~vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~~ 52 (59) +....++.+|+|++|- +|..-..++++|.+.|++.|++.- T Consensus 174 ~~~~~~l~~~~vlviG----aGem~~l~~k~L~~~g~~~i~v~n 213 (429) T PRK00045 174 KKIFGDLSGKKVLVIG----AGEMGELVAKHLAEKGVRKITVAN 213 (429) T ss_pred HHHCCCCCCCEEEEEC----CCHHHHHHHHHHHHCCCCEEEEEC T ss_conf 9864781206599976----748999999999855998499975 No 86 >cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, Probab=60.85 E-value=9.8 Score=20.00 Aligned_cols=40 Identities=25% Similarity=0.396 Sum_probs=32.8 Q ss_pred CHHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEE Q ss_conf 10210028975999920045738899999999978997899999 Q gi|254780309|r 9 QYVSKHVAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILT 52 (59) Q Consensus 9 ~~~~~~i~gk~vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~~ 52 (59) +....++.+|++|+|- +|.+-..+++.|.+.|+.++.+.. T Consensus 170 ~~~~~~l~~~~vLviG----aGem~~l~~~~L~~~g~~~i~v~n 209 (311) T cd05213 170 EKIFGNLKGKKVLVIG----AGEMGELAAKHLAAKGVAEITIAN 209 (311) T ss_pred HHHHCCCCCCEEEEEC----CCHHHHHHHHHHHHCCCCEEEEEC T ss_conf 9871872116799986----879999999999965998259976 No 87 >cd01525 RHOD_Kc Member of the Rhodanese Homology Domain superfamily. Included in this CD are the rhodanese-like domains found C-terminal of the serine/threonine protein kinases catalytic (S_TKc) domain and the Tre-2, BUB2p, Cdc16p (TBC) domain. The putative active site Cys residue is not present in this CD. Probab=57.49 E-value=19 Score=18.40 Aligned_cols=35 Identities=29% Similarity=0.317 Sum_probs=30.5 Q ss_pred CCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEE Q ss_conf 02897599992004573889999999997899789999 Q gi|254780309|r 14 HVAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSIL 51 (59) Q Consensus 14 ~i~gk~vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~ 51 (59) .-+||.|++|+- .|.+....++.|.+.|-.+|.++ T Consensus 62 k~Kgk~VViV~~---~g~~a~~fa~~Lvk~Gf~rVcvL 96 (105) T cd01525 62 NYKGKIIVIVSH---SHKHAALFAAFLVKCGVPRVCIL 96 (105) T ss_pred HCCCCEEEEECC---CCCCHHHHHHHHHHCCCCEEEEE T ss_conf 758982999889---98679999999998499869993 No 88 >COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism] Probab=56.33 E-value=20 Score=18.29 Aligned_cols=36 Identities=28% Similarity=0.443 Sum_probs=30.8 Q ss_pred HHCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEE Q ss_conf 10028975999920045738899999999978997899999 Q gi|254780309|r 12 SKHVAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILT 52 (59) Q Consensus 12 ~~~i~gk~vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~~ 52 (59) ..+++||+|++| =+|+|...++..|.+.| ++|.++. T Consensus 170 ~~~~~GKrV~VI----G~GaSA~di~~~l~~~g-a~vt~~q 205 (443) T COG2072 170 PEDLRGKRVLVI----GAGASAVDIAPELAEVG-ASVTLSQ 205 (443) T ss_pred HHHCCCCEEEEE----CCCCCHHHHHHHHHHCC-CEEEEEE T ss_conf 134278879998----98703999999997306-7178985 No 89 >cd01444 GlpE_ST GlpE sulfurtransferase (ST) and homologs are members of the Rhodanese Homology Domain superfamily. Unlike other rhodanese sulfurtransferases, GlpE is a single domain protein but indications are that it functions as a dimer. The active site contains a catalytically active cysteine. Probab=53.91 E-value=22 Score=18.07 Aligned_cols=33 Identities=24% Similarity=0.276 Sum_probs=28.5 Q ss_pred CCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEE Q ss_conf 897599992004573889999999997899789999 Q gi|254780309|r 16 AGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSIL 51 (59) Q Consensus 16 ~gk~vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~ 51 (59) ++++|+++ ..+|.....+++.|.+.|-.+|+.+ T Consensus 55 ~~~~ivv~---C~~G~rs~~aa~~L~~~G~~~v~~L 87 (96) T cd01444 55 RDRPVVVY---CYHGNSSAQLAQALREAGFTDVRSL 87 (96) T ss_pred CCCCEEEE---ECCCHHHHHHHHHHHHHCCCCEEEC T ss_conf 89818998---0896689999999998289833998 No 90 >cd01528 RHOD_2 Member of the Rhodanese Homology Domain superfamily, subgroup 2. Subgroup 2 includes uncharacterized putative rhodanese-related domains. Probab=51.25 E-value=25 Score=17.83 Aligned_cols=33 Identities=21% Similarity=0.196 Sum_probs=28.7 Q ss_pred CCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEE Q ss_conf 897599992004573889999999997899789999 Q gi|254780309|r 16 AGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSIL 51 (59) Q Consensus 16 ~gk~vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~ 51 (59) ++++|+++ ..+|.....+++.|++.|-.+|+.+ T Consensus 57 ~d~~iv~~---C~~G~rS~~aa~~L~~~G~~~V~~L 89 (101) T cd01528 57 PDKDIVVL---CHHGGRSMQVAQWLLRQGFENVYNL 89 (101) T ss_pred CCCCEEEE---CCCCHHHHHHHHHHHHCCCCCEEEE T ss_conf 89808998---3898159999999998599777984 No 91 >COG4825 Uncharacterized membrane-anchored protein conserved in bacteria [Function unknown] Probab=50.07 E-value=26 Score=17.72 Aligned_cols=45 Identities=11% Similarity=0.126 Sum_probs=36.1 Q ss_pred CHHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEE Q ss_conf 102100289759999200457388999999999789978999999 Q gi|254780309|r 9 QYVSKHVAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILTF 53 (59) Q Consensus 9 ~~~~~~i~gk~vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~~l 53 (59) |+....++||+|+|+-|--.--.-+......+++..+-.|.+=.- T Consensus 172 PD~~n~~~gR~VlIva~~~~~~~dLk~lk~fi~ey~pvlIgVdga 216 (395) T COG4825 172 PDLDNDLRGRHVLIVADEPSFEDDLKSLKPFIKEYQPVLIGVDGA 216 (395) T ss_pred CCCCCHHCCCEEEEECCCCCHHHHHHHHHHHHHHHCCEEEEECCH T ss_conf 863012047579997389866888999888887508779970550 No 92 >cd00158 RHOD Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins. Probab=45.23 E-value=27 Score=17.66 Aligned_cols=34 Identities=29% Similarity=0.267 Sum_probs=28.6 Q ss_pred CCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEE Q ss_conf 2897599992004573889999999997899789999 Q gi|254780309|r 15 VAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSIL 51 (59) Q Consensus 15 i~gk~vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~ 51 (59) -++++|+++.. +|.....++..|++.|-..|+.+ T Consensus 48 ~~~~~iv~~C~---~g~rs~~aa~~L~~~G~~~v~~l 81 (89) T cd00158 48 DKDKPIVVYCR---SGNRSARAAKLLRKAGGTNVYNL 81 (89) T ss_pred CCCCCEEEECC---CCCCCHHHHHHHHHCCCCCEEEE T ss_conf 68987787759---89812789999998089887990 No 93 >cd01674 Homoaconitase_Swivel Homoaconitase swivel domain. This family includes homoaconitase and other uncharacterized proteins of the Aconitase family. Homoaconitase is part of an unusual lysine biosynthesis pathway found only in filamentous fungi, in which lysine is synthesized via the alpha-aminoadipate pathway. In this pathway, homoaconitase catalyzes the conversion of cis-homoaconitic acid into homoisocitric acid. The reaction mechanism is believed to be similar to that of other aconitases. This is the swivel domain, which is believed to undergo swivelling conformational change in the enzyme mechanism. Probab=43.98 E-value=21 Score=18.16 Aligned_cols=48 Identities=25% Similarity=0.176 Sum_probs=38.6 Q ss_pred CCHHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEEEE Q ss_conf 510210028975999920045738899999999978997899999983 Q gi|254780309|r 8 PQYVSKHVAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILTFSR 55 (59) Q Consensus 8 ~~~~~~~i~gk~vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~~lar 55 (59) .++.....+.-+||+-.+-.=+|++-+++.-.|+..|.+.|..-.+|+ T Consensus 36 dp~f~~~~k~g~ILVaG~NFGcGSSREhA~~aL~~~Gi~aVIA~SFa~ 83 (129) T cd01674 36 DSEFSTKTKQGDILVSGFNFGTGSSREQAATALLAKGIPLVVSGSFGN 83 (129) T ss_pred CCCCCCCCCCCCEEEECCCCCCCCCHHHHHHHHHHCCCCEEEECHHHH T ss_conf 975333367888899668657673488999999984997999852999 No 94 >PRK00439 leuD 3-isopropylmalate dehydratase small subunit; Reviewed Probab=43.20 E-value=25 Score=17.83 Aligned_cols=49 Identities=27% Similarity=0.350 Sum_probs=41.1 Q ss_pred CCHHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEEEEE Q ss_conf 5102100289759999200457388999999999789978999999830 Q gi|254780309|r 8 PQYVSKHVAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILTFSRS 56 (59) Q Consensus 8 ~~~~~~~i~gk~vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~~lar~ 56 (59) .+++...++.-+|++-..-.=.|++-.++...|+..|.+.|..-+++|- T Consensus 39 ~p~f~~~~~~gdIiVaG~NFG~GSSRE~A~~al~~~Gi~~VIA~SFa~I 87 (163) T PRK00439 39 DPEFAKKVKPGDIIVAGKNFGCGSSREHAPLALKAAGVSAVIAKSFARI 87 (163) T ss_pred CCCCCCCCCCCCEEEECCCCCCCCCHHHHHHHHHHCCCCEEEEHHHHHH T ss_conf 8640014668758996885168886799999999859879985237899 No 95 >pfam00694 Aconitase_C Aconitase C-terminal domain. Members of this family usually also match to pfam00330. This domain undergoes conformational change in the enzyme mechanism. Probab=43.03 E-value=25 Score=17.76 Aligned_cols=39 Identities=26% Similarity=0.376 Sum_probs=32.5 Q ss_pred CCE-EEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEEEE Q ss_conf 975-999920045738899999999978997899999983 Q gi|254780309|r 17 GLK-ILLIDDVYTTGATAKCAAIALKKAGAMTVSILTFSR 55 (59) Q Consensus 17 gk~-vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~~lar 55 (59) +.+ |++-++-+-+|++-.+++..|+..|.+.|..-++++ T Consensus 73 ~~~~ilvag~nfG~GSSREhA~~al~~~Gi~~via~Sf~~ 112 (131) T pfam00694 73 GAPILVIGGKNYGCGSSREHAAWAPRDLGIKAVIAKSFAR 112 (131) T ss_pred CCCEEEEECCCCCCCCHHHHHHHHHHHCCCCEEEECCHHH T ss_conf 9987998247667775489999999983995999813999 No 96 >PRK00886 2-phosphosulfolactate phosphatase; Provisional Probab=42.63 E-value=34 Score=17.07 Aligned_cols=43 Identities=16% Similarity=0.214 Sum_probs=27.8 Q ss_pred EEECCHHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEE Q ss_conf 882510210028975999920045738899999999978997899999 Q gi|254780309|r 5 FNVPQYVSKHVAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILT 52 (59) Q Consensus 5 f~i~~~~~~~i~gk~vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~~ 52 (59) |......+.++.++.+++| ||+-..+|+.. ...+|++.|..+. T Consensus 6 ~~~~~~i~~~~~~~~vVVi-DVLRAtTti~~----al~~Ga~~ViP~~ 48 (240) T PRK00886 6 IHTADDIPEDILPKTAVVI-DVLRATSTIAT----ALNNGAEAVIPFS 48 (240) T ss_pred EECHHHCCCCCCCCEEEEE-ECCCHHHHHHH----HHHCCCCEEEEEC T ss_conf 9586658866789959999-64774999999----9987997799838 No 97 >KOG4203 consensus Probab=41.75 E-value=26 Score=17.74 Aligned_cols=35 Identities=34% Similarity=0.482 Sum_probs=29.4 Q ss_pred HHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCC Q ss_conf 210028975999920045738899999999978997 Q gi|254780309|r 11 VSKHVAGLKILLIDDVYTTGATAKCAAIALKKAGAM 46 (59) Q Consensus 11 ~~~~i~gk~vliVDDiitTG~T~~~~~~~L~~~ga~ 46 (59) ++.++... |++.|-++.||++...+...|...|.. T Consensus 381 lP~~is~~-V~ll~p~~~tg~~~~~a~~~ll~~gv~ 415 (473) T KOG4203 381 LPKDISDR-VLLLDPVLATGNSAMMAIILLLDHGVP 415 (473) T ss_pred CCCCCCCC-EEEECCHHHCCHHHHHHHHHHHHCCCC T ss_conf 86333400-165052131454589999998747993 No 98 >PRK10693 response regulator of RpoS; Provisional Probab=40.66 E-value=34 Score=17.08 Aligned_cols=31 Identities=23% Similarity=0.265 Sum_probs=21.5 Q ss_pred CCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCE Q ss_conf 0289759999200457388999999999789978 Q gi|254780309|r 14 HVAGLKILLIDDVYTTGATAKCAAIALKKAGAMT 47 (59) Q Consensus 14 ~i~gk~vliVDDiitTG~T~~~~~~~L~~~ga~~ 47 (59) .+.||.||||||--.... .....|...|... T Consensus 4 pl~gkkILIVDDd~~~r~---~l~~~L~~~G~~V 34 (337) T PRK10693 4 PLVGKQILIVEDEPVFRS---LLDSWFSSLGATT 34 (337) T ss_pred CCCCCEEEEECCCHHHHH---HHHHHHHHCCCEE T ss_conf 888998999949999999---9999999789999 No 99 >smart00450 RHOD Rhodanese Homology Domain. An alpha beta fold found duplicated in the Rhodanese protein. The the Cysteine containing enzymatically active version of the domain is also found in the CDC25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and stress proteins such as Senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions with a loss of the cysteine are also seen in Dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases. These are likely to play a role in protein interactions. Probab=38.12 E-value=40 Score=16.67 Aligned_cols=34 Identities=21% Similarity=0.221 Sum_probs=28.6 Q ss_pred CCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEE Q ss_conf 2897599992004573889999999997899789999 Q gi|254780309|r 15 VAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSIL 51 (59) Q Consensus 15 i~gk~vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~ 51 (59) -++++|++.+ .+|.....++..|...|-.+|+.+ T Consensus 54 ~~~~~vi~yc---~~g~~s~~~~~~l~~~G~~~v~~l 87 (100) T smart00450 54 DKDKPVVVYC---RSGNRSAKAAWLLRELGFKNVYLL 87 (100) T ss_pred CCCCEEEEEC---CCCCCHHHHHHHHHHCCCCCEEEE T ss_conf 7998499987---999806999999998089887980 No 100 >cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II. Probab=37.16 E-value=36 Score=16.94 Aligned_cols=34 Identities=15% Similarity=0.087 Sum_probs=24.1 Q ss_pred CEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEE Q ss_conf 7599992004573889999999997899789999 Q gi|254780309|r 18 LKILLIDDVYTTGATAKCAAIALKKAGAMTVSIL 51 (59) Q Consensus 18 k~vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~ 51 (59) -.=+||||++-.+.-+..+.+.|.....--|.+- T Consensus 85 G~nvIvD~v~~~~~~l~d~~~~L~g~~v~~VGV~ 118 (175) T cd00227 85 GANVIADDVFLGRAALQDCWRSFVGLDVLWVGVR 118 (175) T ss_pred CCCEEEEEEECCCHHHHHHHHHHCCCCEEEEEEE T ss_conf 9988986312380889999998579927999987 No 101 >cd01534 4RHOD_Repeat_3 Member of the Rhodanese Homology Domain superfamily, repeat 3. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 3rd repeat which does not contain the putative catalytic Cys residue. Probab=36.98 E-value=42 Score=16.57 Aligned_cols=33 Identities=39% Similarity=0.519 Sum_probs=28.1 Q ss_pred CCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEE Q ss_conf 2897599992004573889999999997899789999 Q gi|254780309|r 15 VAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSIL 51 (59) Q Consensus 15 i~gk~vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~ 51 (59) .++++|++++. +|.-...++..|++.|- +|+.+ T Consensus 54 ~k~~~ivl~C~---~G~RS~~AA~~L~~~G~-~v~~L 86 (95) T cd01534 54 VRGARIVLADD---DGVRADMTASWLAQMGW-EVYVL 86 (95) T ss_pred CCCCEEEEECC---CCCCHHHHHHHHHHCCC-CEEEE T ss_conf 68983999859---99879999999998699-76995 No 102 >PRK09620 hypothetical protein; Provisional Probab=35.43 E-value=45 Score=16.43 Aligned_cols=37 Identities=27% Similarity=0.411 Sum_probs=27.6 Q ss_pred CCCCEEEE--------EEEC-----CCCCHHHHHHHHHHHHCCCCEEEEE Q ss_conf 28975999--------9200-----4573889999999997899789999 Q gi|254780309|r 15 VAGLKILL--------IDDV-----YTTGATAKCAAIALKKAGAMTVSIL 51 (59) Q Consensus 15 i~gk~vli--------VDDi-----itTG~T~~~~~~~L~~~ga~~V~~~ 51 (59) ++||+||| +|+| ..||.+=.++++.+..+||....+. T Consensus 1 L~GkkVLITaG~T~E~IDpVR~ItN~SSGkmG~aiA~~a~~~GA~Vtli~ 50 (229) T PRK09620 1 MKGKKVLITSGGCLEKWDQVRGHTNMAKGTIGRIIAEELISKGAHVIYLH 50 (229) T ss_pred CCCCEEEEECCCCCCCCCCCCEECCCCCHHHHHHHHHHHHHCCCEEEEEE T ss_conf 99989999588875666884562776823999999999997799799994 No 103 >TIGR01035 hemA glutamyl-tRNA reductase; InterPro: IPR000343 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway . The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including vitamin B12, haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin . The first stage in tetrapyrrole synthesis is the synthesis of 5-aminoaevulinic acid ALA via two possible routes: (1) condensation of succinyl CoA and glycine (C4 pathway) using ALA synthase (2.3.1.37 from EC), or (2) decarboxylation of glutamate (C5 pathway) via three different enzymes, glutamyl-tRNA synthetase (6.1.1.17 from EC) to charge a tRNA with glutamate, glutamyl-tRNA reductase (1.2.1.70 from EC) to reduce glutamyl-tRNA to glutamate-1-semialdehyde (GSA), and GSA aminotransferase (5.4.3.8 from EC) to catalyse a transamination reaction to produce ALA. The second stage is to convert ALA to uroporphyrinogen III, the first macrocyclic tetrapyrrolic structure in the pathway. This is achieved by the action of three enzymes in one common pathway: porphobilinogen (PBG) synthase (or ALA dehydratase, 4.2.1.24 from EC) to condense two ALA molecules to generate porphobilinogen; hydroxymethylbilane synthase (or PBG deaminase, 2.5.1.61 from EC) to polymerise four PBG molecules into preuroporphyrinogen (tetrapyrrole structure); and uroporphyrinogen III synthase (4.2.1.75 from EC) to link two pyrrole units together (rings A and D) to yield uroporphyrinogen III. Uroporphyrinogen III is the first branch point of the pathway. To synthesise cobalamin (vitamin B12), sirohaem, and coenzyme F430, uroporphyrinogen III needs to be converted into precorrin-2 by the action of uroporphyrinogen III methyltransferase (2.1.1.107 from EC). To synthesise haem and chlorophyll, uroporphyrinogen III needs to be decarboxylated into coproporphyrinogen III by the action of uroporphyrinogen III decarboxylase (4.1.1.37 from EC) . This entry represents glutamyl-tRNA reductase (1.2.1.70 from EC), which reduces glutamyl-tRNA to glutamate-1-semialdehyde during the first stage of tetrapyrrole biosynthesis by the C5 pathway , . This enzyme required NADPH as a coenzyme.; GO: 0008883 glutamyl-tRNA reductase activity, 0050661 NADP binding, 0033014 tetrapyrrole biosynthetic process. Probab=34.45 E-value=47 Score=16.34 Aligned_cols=40 Identities=28% Similarity=0.372 Sum_probs=33.3 Q ss_pred CCHHHHC--CCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEE Q ss_conf 5102100--2897599992004573889999999997899789999 Q gi|254780309|r 8 PQYVSKH--VAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSIL 51 (59) Q Consensus 8 ~~~~~~~--i~gk~vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~ 51 (59) .+..-.+ ++++++|||- =|-+..-++++|.+.|..+|.++ T Consensus 174 A~~ifG~erL~~~~~LliG----AGeMg~Lva~~L~~~~v~~~~i~ 215 (436) T TIGR01035 174 AEKIFGSERLKGKKVLLIG----AGEMGELVAKHLREKGVGKVLIA 215 (436) T ss_pred HHHHHCCCCCCCCEEEEEE----CCHHHHHHHHHHHHCCCCEEEEE T ss_conf 9987256211664189982----74579999999964895289885 No 104 >cd01529 4RHOD_Repeats Member of the Rhodanese Homology Domain superfamily. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. Only the second and most of the fourth repeats contain the putative catalytic Cys residue. This CD aligns the 1st , 2nd, 3rd, and 4th repeats. Probab=34.32 E-value=47 Score=16.33 Aligned_cols=33 Identities=24% Similarity=0.244 Sum_probs=28.5 Q ss_pred CCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEE Q ss_conf 897599992004573889999999997899789999 Q gi|254780309|r 16 AGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSIL 51 (59) Q Consensus 16 ~gk~vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~ 51 (59) ++++|+++. .+|.....+++.|.+.|-+.|+.+ T Consensus 55 ~~~~ivv~C---~~G~Rs~~Aa~~L~~~G~~~V~~L 87 (96) T cd01529 55 RATRYVLTC---DGSLLARFAAQELLALGGKPVALL 87 (96) T ss_pred CCCEEEEEC---CCCCHHHHHHHHHHHCCCCCEEEE T ss_conf 999799986---998469999999998589880990 No 105 >cd01518 RHOD_YceA Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YceA, Bacillus subtilis YbfQ, and similar uncharacterized proteins. Probab=34.21 E-value=47 Score=16.32 Aligned_cols=34 Identities=32% Similarity=0.384 Sum_probs=29.8 Q ss_pred CCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEE Q ss_conf 2897599992004573889999999997899789999 Q gi|254780309|r 15 VAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSIL 51 (59) Q Consensus 15 i~gk~vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~ 51 (59) -++|+|++. ..+|.--..+++.|++.|-+.|+.+ T Consensus 59 ~k~k~ivvy---C~~G~RS~~Aa~~L~~~Gf~~V~~L 92 (101) T cd01518 59 LKGKKVLMY---CTGGIRCEKASAYLKERGFKNVYQL 92 (101) T ss_pred CCCCEEEEE---CCCCHHHHHHHHHHHHCCCCCEEEE T ss_conf 438769998---5998279999999998498706896 No 106 >PRK01641 leuD isopropylmalate isomerase small subunit; Provisional Probab=33.17 E-value=49 Score=16.22 Aligned_cols=42 Identities=26% Similarity=0.350 Sum_probs=36.7 Q ss_pred HCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEEE Q ss_conf 002897599992004573889999999997899789999998 Q gi|254780309|r 13 KHVAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILTFS 54 (59) Q Consensus 13 ~~i~gk~vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~~la 54 (59) +..++..|||..+-.-.|++=++|.-.|+..|-+.|..-++| T Consensus 63 ~~~~~a~ILvag~NFGCGSSREhAvwAL~d~Gir~VIA~SFa 104 (201) T PRK01641 63 PRYQGASILLAGENFGCGSSREHAPWALADYGFRVVIAPSFA 104 (201) T ss_pred CCCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCEEEECHHH T ss_conf 566898189967876777508899999998599899972599 No 107 >cd01447 Polysulfide_ST Polysulfide-sulfurtransferase - Rhodanese Homology Domain. This domain is believed to serve as a polysulfide binding and transferase domain in anaerobic gram-negative bacteria, functioning in oxidative phosphorylation with polysulfide-sulfur as a terminal electron acceptor. The active site contains the same conserved cysteine that is the catalytic residue in other Rhodanese Homology Domain proteins. Probab=32.97 E-value=49 Score=16.20 Aligned_cols=33 Identities=15% Similarity=0.174 Sum_probs=28.2 Q ss_pred CCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEE Q ss_conf 897599992004573889999999997899789999 Q gi|254780309|r 16 AGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSIL 51 (59) Q Consensus 16 ~gk~vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~ 51 (59) ++|+|++ +..+|.....+++.|++.|-.+|+.+ T Consensus 60 ~~~~iv~---~C~~G~RS~~aa~~L~~~Gy~~v~~l 92 (103) T cd01447 60 EDKPFVF---YCASGWRSALAGKTLQDMGLKPVYNI 92 (103) T ss_pred CCCEEEE---ECCCCCHHHHHHHHHHHCCCCCEEEC T ss_conf 8887999---86998059999999998598443884 No 108 >TIGR01139 cysK cysteine synthase A; InterPro: IPR005859 This model discriminates cysteine synthase A (CysK) and cysteine synthase B (CysM) from cystathionine beta-synthase, a protein found primarily in eukaryotes and carrying a C-terminal CBS domain lacking from this protein. Bacterial proteins lacking the CBS domain but otherwise showing resemblance to cystathionine beta-synthases and considerable phylogenetic distance from known cysteine synthases were excluded. Cysteine synthase (O-acetylserine (thiol)-lyase, 2.5.1.47 from EC) is the enzyme responsible for the formation of cysteine from O-acetyl-serine and hydrogen sulphide with the concomitant release of acetic acid. In bacteria such two forms of the enzyme are known (genes cysK and cysM). CysK differs from CysM in that it can also use sulphide instead of thiosulphate, to produce cysteine instead of cysteine thiosulphonate. ; GO: 0004124 cysteine synthase activity, 0006535 cysteine biosynthetic process from serine. Probab=32.96 E-value=49 Score=16.23 Aligned_cols=28 Identities=21% Similarity=0.209 Sum_probs=21.9 Q ss_pred CCCCCHHHHHHHHHHHHCCC--CEEEEEEE Q ss_conf 04573889999999997899--78999999 Q gi|254780309|r 26 VYTTGATAKCAAIALKKAGA--MTVSILTF 53 (59) Q Consensus 26 iitTG~T~~~~~~~L~~~ga--~~V~~~~l 53 (59) =+=||.|++=+.++||+..+ ++|.+.+. T Consensus 174 G~GTGGTITGvG~~LK~~~pkG~~~~~~AV 203 (312) T TIGR01139 174 GVGTGGTITGVGEVLKEKKPKGKDIKIVAV 203 (312) T ss_pred EECCCCHHHHHHHHHHCCCCCCCEEEEEEE T ss_conf 323685154789987400789955899987 No 109 >PRK06921 hypothetical protein; Provisional Probab=32.83 E-value=16 Score=18.86 Aligned_cols=33 Identities=15% Similarity=0.153 Sum_probs=21.1 Q ss_pred HHHHCCCCCEEEEEEEC--------CCCCHHHHHHHHHHHH Q ss_conf 02100289759999200--------4573889999999997 Q gi|254780309|r 10 YVSKHVAGLKILLIDDV--------YTTGATAKCAAIALKK 42 (59) Q Consensus 10 ~~~~~i~gk~vliVDDi--------itTG~T~~~~~~~L~~ 42 (59) .....++..++||+||. -.|-++....-..+.. T Consensus 169 ~~l~~~~~~dlLIIDDLfk~~~G~e~~te~~~~~lf~iIN~ 209 (265) T PRK06921 169 AKLNRMKKVEVLFIDDLFKPVNGKPRATEWQIEQTYSVVNY 209 (265) T ss_pred HHHHHHHCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHH T ss_conf 99998632999998221223479878988999999999999 No 110 >TIGR01136 cysKM cysteine synthases; InterPro: IPR005856 This model discriminates cysteine synthases (both CysK and CysM) from cystathionine beta-synthase, a protein found primarily in eukaryotes and carrying a C-terminal CBS domain lacking from this protein. Bacterial proteins lacking the CBS domain but otherwise showing resemblance to cystathionine beta-synthases and considerable phylogenetic distance from known cysteine synthases were excluded. Cysteine synthase (O-acetylserine (thiol)-lyase) is the enzyme responsible for the formation of cysteine from O-acetyl-serine and hydrogen sulphide with the concomitant release of acetic acid. In bacteria such two forms of the enzyme are known (genes cysK and cysM). CysM differs from CysK in that it can also use thiosulphate instead of sulphide, to produce cysteine thiosulphonate instead of cysteine. ; GO: 0004124 cysteine synthase activity, 0006535 cysteine biosynthetic process from serine. Probab=31.62 E-value=48 Score=16.25 Aligned_cols=28 Identities=21% Similarity=0.281 Sum_probs=21.0 Q ss_pred CCCCHHHHHHHHHHHHCCC--CEEEEEEEE Q ss_conf 4573889999999997899--789999998 Q gi|254780309|r 27 YTTGATAKCAAIALKKAGA--MTVSILTFS 54 (59) Q Consensus 27 itTG~T~~~~~~~L~~~ga--~~V~~~~la 54 (59) +=||.|+.=..++||+..+ +.|.+..+= T Consensus 176 ~GTGGTItGvgr~LK~~~pkG~~i~i~avE 205 (315) T TIGR01136 176 VGTGGTITGVGRVLKEQNPKGKNIQIVAVE 205 (315) T ss_pred CCCCCCHHHHHHHHHHHCCCCCEEEEEEEE T ss_conf 156751116898986326899617999975 No 111 >PRK11749 putative oxidoreductase; Provisional Probab=30.42 E-value=55 Score=15.96 Aligned_cols=35 Identities=34% Similarity=0.433 Sum_probs=29.8 Q ss_pred CCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEE Q ss_conf 028975999920045738899999999978997899999 Q gi|254780309|r 14 HVAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILT 52 (59) Q Consensus 14 ~i~gk~vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~~ 52 (59) ...||+|++|- .|.|...++..+...||++|+++. T Consensus 273 ~~~Gk~VvVIG----gGnvA~D~Arta~r~GA~~V~vv~ 307 (460) T PRK11749 273 IAVGKRVVVIG----GGNTAMDAARTAKRLGAESVTIVY 307 (460) T ss_pred CCCCCEEEEEC----CCHHHHHHHHHHHHCCCCEEEEEC T ss_conf 54487489989----846699989999982898463300 No 112 >pfam07931 CPT Chloramphenicol phosphotransferase-like protein. The members of this family are all similar to chloramphenicol 3-O phosphotransferase (CPT) expressed by Streptomyces venezuelae. Chloramphenicol (Cm) is a metabolite produced by this bacterium that can inhibit ribosomal peptidyl transferase activity and therefore protein production. By transferring a phosphate group to the C-3 hydroxyl group of Cm, CPT inactivates this potentially lethal metabolite. Probab=29.95 E-value=56 Score=15.92 Aligned_cols=33 Identities=18% Similarity=0.194 Sum_probs=21.0 Q ss_pred CEEEEEEECCCCCHHHHHHH-HHHHHCCCCEEEE Q ss_conf 75999920045738899999-9999789978999 Q gi|254780309|r 18 LKILLIDDVYTTGATAKCAA-IALKKAGAMTVSI 50 (59) Q Consensus 18 k~vliVDDiitTG~T~~~~~-~~L~~~ga~~V~~ 50 (59) -.=+||||++-.+..+..+. +.|.....--|.+ T Consensus 83 G~nvIvD~v~~~~~~l~d~~~~~L~g~~v~~VGV 116 (174) T pfam07931 83 GNNVIVDDVILSGEWLQDCLQRLLSGLDVLFVGV 116 (174) T ss_pred CCCEEEEECCCCCHHHHHHHHHHHCCCCEEEEEE T ss_conf 9998996546693789999999858981799998 No 113 >cd00404 Aconitase_swivel Aconitase swivel domain. Aconitase (aconitate hydratase) catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. This is the aconitase swivel domain, which undergoes swivelling conformational change in the enzyme mechanism. The aconitase family contains the following proteins: - Iron-responsive element binding protein (IRE-BP). IRE-BP is a cytosolic protein that binds to iron-responsive elements (IREs). IREs are stem-loop structures found in the 5'UTR of ferritin, and delta aminolevulinic acid synthase mRNAs, and in the 3'UTR of transferrin receptor mRNA. IRE-BP also express aconitase activity. - 3-isopropylmalate dehydratase (isopropylmalate isomerase), the enzyme that catalyzes the second step in the biosynthesis of leucine. - Homoaconitase (homoaconitate hydratase), an enzyme that participates in the alpha-aminoadipate pathway of lysine biosynthesis and that converts cis-homoaconitate into homoisocitric acid. Probab=29.85 E-value=48 Score=16.27 Aligned_cols=41 Identities=32% Similarity=0.488 Sum_probs=35.1 Q ss_pred CCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEEEE Q ss_conf 28975999920045738899999999978997899999983 Q gi|254780309|r 15 VAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILTFSR 55 (59) Q Consensus 15 i~gk~vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~~lar 55 (59) -.|..|++-+.-+-+|++-.++...++..|.+.|..-.+|| T Consensus 13 ~ag~~iiVag~nfG~GSSRE~A~~~l~~~Gi~~ViA~Sfar 53 (88) T cd00404 13 PAGPGVVIGDENYGTGSSREHAALELRLLGGRAVIAKSFAR 53 (88) T ss_pred CCCCEEEEECCCCCCCCCHHHHHHHHHHCCCEEEEEHHHHH T ss_conf 48987999667547785188999999984961999732999 No 114 >pfam03192 DUF257 Pyrococcus protein of unknown function, DUF257. Probab=29.02 E-value=50 Score=16.16 Aligned_cols=24 Identities=25% Similarity=0.272 Sum_probs=17.7 Q ss_pred EEEEEEECCCCCHHHHHHHHHHHHCCC Q ss_conf 599992004573889999999997899 Q gi|254780309|r 19 KILLIDDVYTTGATAKCAAIALKKAGA 45 (59) Q Consensus 19 ~vliVDDiitTG~T~~~~~~~L~~~ga 45 (59) --++|||+.||+..+. ..|+-.|. T Consensus 40 ~~ilI~DilDtl~i~~---~~lel~G~ 63 (210) T pfam03192 40 IPIVIDDILDTLPIYR---KHLELLGI 63 (210) T ss_pred CCEEEEECCCCHHHHH---HHHHHCCC T ss_conf 9389995456589999---87997187 No 115 >TIGR02668 moaA_archaeal probable molybdenum cofactor biosynthesis protein A; InterPro: IPR013485 This entry consists of archaeal proteins which are predicted to be functionally equivalent to MoaA (molybdenum cofactor biosynthesis protein A) from bacteria (see IPR013483 from INTERPRO).; GO: 0046872 metal ion binding, 0006777 Mo-molybdopterin cofactor biosynthetic process. Probab=28.70 E-value=56 Score=15.91 Aligned_cols=25 Identities=32% Similarity=0.315 Sum_probs=21.9 Q ss_pred CCCCCHHHHHHHHHHHHCCCCEEEE Q ss_conf 0457388999999999789978999 Q gi|254780309|r 26 VYTTGATAKCAAIALKKAGAMTVSI 50 (59) Q Consensus 26 iitTG~T~~~~~~~L~~~ga~~V~~ 50 (59) +.|-|..|...++.|+++|=..|.+ T Consensus 96 mTTNG~LL~~~A~~Lk~AGLdRVNV 120 (324) T TIGR02668 96 MTTNGILLEKLAKKLKEAGLDRVNV 120 (324) T ss_pred CCCCHHHHHHHHHHHHHHCCCEEEE T ss_conf 0303144898999999828561312 No 116 >cd01532 4RHOD_Repeat_1 Member of the Rhodanese Homology Domain superfamily, repeat 1. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 1st repeat which does not contain the putative catalytic Cys residue. Probab=28.25 E-value=60 Score=15.75 Aligned_cols=35 Identities=23% Similarity=0.175 Sum_probs=25.9 Q ss_pred CCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEE Q ss_conf 897599992004573889999999997899789999 Q gi|254780309|r 16 AGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSIL 51 (59) Q Consensus 16 ~gk~vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~ 51 (59) ++++|+++++-=..| -...+++.|.+.|=..|+.+ T Consensus 49 kd~~Ivvyc~~g~~~-~s~~Aa~~L~~~Gy~~V~~L 83 (92) T cd01532 49 RDTPIVVYGEGGGED-LAPRAARRLSELGYTDVALL 83 (92) T ss_pred CCCEEEEEECCCCCH-HHHHHHHHHHHCCCCCEEEC T ss_conf 998299996999962-99999999998699686885 No 117 >cd01644 RT_pepA17 RT_pepA17: Reverse transcriptase (RTs) in retrotransposons. This subfamily represents the RT domain of a multifunctional enzyme. C-terminal to the RT domain is a domain homologous to aspartic proteinases (corresponding to Merops family A17) encoded by retrotransposons and retroviruses. RT catalyzes DNA replication from an RNA template and is responsible for the replication of retroelements. Probab=27.92 E-value=32 Score=17.23 Aligned_cols=24 Identities=21% Similarity=0.296 Sum_probs=18.7 Q ss_pred EEEEEEECCCCCHHHHHHHHHHHH Q ss_conf 599992004573889999999997 Q gi|254780309|r 19 KILLIDDVYTTGATAKCAAIALKK 42 (59) Q Consensus 19 ~vliVDDiitTG~T~~~~~~~L~~ 42 (59) +-.-|||+++++.|..++.+...+ T Consensus 137 ~~~YVDD~l~s~~t~eea~~l~~~ 160 (213) T cd01644 137 RNFYVDDILVSTDTLNEAVNVAKR 160 (213) T ss_pred HCCCCCCCCCCCCCHHHHHHHHHH T ss_conf 653121411376999999999999 No 118 >TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase; InterPro: IPR010110 This entry represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.; GO: 0004764 shikimate 5-dehydrogenase activity, 0005737 cytoplasm. Probab=27.52 E-value=62 Score=15.67 Aligned_cols=27 Identities=26% Similarity=0.442 Sum_probs=24.0 Q ss_pred CCCCCHHHHHHHHHHHHCCCCEEEEEE Q ss_conf 045738899999999978997899999 Q gi|254780309|r 26 VYTTGATAKCAAIALKKAGAMTVSILT 52 (59) Q Consensus 26 iitTG~T~~~~~~~L~~~ga~~V~~~~ 52 (59) |+=+|.|..+|.-.|.+.|++.|+++. T Consensus 135 viGaGGtsrAA~yaL~sLG~~~I~~in 161 (291) T TIGR01809 135 VIGAGGTSRAAVYALASLGVKDIYVIN 161 (291) T ss_pred EECCCCHHHHHHHHHHHCCCCEEEEEE T ss_conf 883872148999999866997069973 No 119 >PRK00162 glpE thiosulfate sulfurtransferase; Validated Probab=27.36 E-value=62 Score=15.66 Aligned_cols=33 Identities=18% Similarity=0.199 Sum_probs=28.6 Q ss_pred CCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEE Q ss_conf 897599992004573889999999997899789999 Q gi|254780309|r 16 AGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSIL 51 (59) Q Consensus 16 ~gk~vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~ 51 (59) .+++++++ ..+|..-..+++.|.+.|-+.|+-+ T Consensus 57 ~d~~ivv~---C~~G~rS~~aa~~L~~~Gf~~V~~l 89 (104) T PRK00162 57 FDTPVMVM---CYHGNSSQGAAQYLLQQGFDVVYSI 89 (104) T ss_pred CCCCEEEE---ECCCHHHHHHHHHHHHCCCCCEEEE T ss_conf 88988999---5988189999999997376438981 No 120 >cd01527 RHOD_YgaP Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YgaP, and similar uncharacterized putative rhodanese-related sulfurtransferases. Probab=26.39 E-value=65 Score=15.56 Aligned_cols=34 Identities=21% Similarity=0.195 Sum_probs=28.5 Q ss_pred CCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEE Q ss_conf 2897599992004573889999999997899789999 Q gi|254780309|r 15 VAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSIL 51 (59) Q Consensus 15 i~gk~vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~ 51 (59) -++++|++ +..+|.....+++.|.+.|-..|+.+ T Consensus 52 ~~~~~vv~---~C~~G~RS~~aa~~L~~~g~~~v~~l 85 (99) T cd01527 52 VGANAIIF---HCRSGMRTQQNAERLAAISAGEAYVL 85 (99) T ss_pred CCCCEEEE---ECCCCHHHHHHHHHHHHCCCCCEEEE T ss_conf 78986999---87997369999999998599888995 No 121 >PRK06975 bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed Probab=25.07 E-value=69 Score=15.42 Aligned_cols=44 Identities=23% Similarity=0.387 Sum_probs=35.9 Q ss_pred HHCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEEEEECCC Q ss_conf 100289759999200457388999999999789978999999830689 Q gi|254780309|r 12 SKHVAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILTFSRSLKD 59 (59) Q Consensus 12 ~~~i~gk~vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~~lar~~~~ 59 (59) ..++.||.|+|+=-. .| =...++.|+++||..-++-|.-|+.|+ T Consensus 134 lq~v~gkrVLIvRG~--GG--RElLaetL~~RGA~V~y~e~YrR~~P~ 177 (653) T PRK06975 134 AAALAGKRVLIVRGD--GG--REWLAERLREAGAEVELVEAYRRVVPE 177 (653) T ss_pred HHHCCCCEEEEEECC--CC--HHHHHHHHHHCCCEEEEEEEEEECCCC T ss_conf 765349979998278--53--799999999879805699786303989 No 122 >PRK12422 chromosomal replication initiation protein; Provisional Probab=24.79 E-value=27 Score=17.63 Aligned_cols=38 Identities=21% Similarity=0.325 Sum_probs=22.2 Q ss_pred HHHHCCCCCEEEEEEECC--C-CCHHHHH---HHHHHHHCCCCE Q ss_conf 021002897599992004--5-7388999---999999789978 Q gi|254780309|r 10 YVSKHVAGLKILLIDDVY--T-TGATAKC---AAIALKKAGAMT 47 (59) Q Consensus 10 ~~~~~i~gk~vliVDDii--t-TG~T~~~---~~~~L~~~ga~~ 47 (59) .++...++-+|||||||= . -..|-.+ ..+.|.+.|-.- T Consensus 195 ~Fr~~yr~~DvLLIDDIQfl~gK~~tqeEff~tfN~L~~~~KQI 238 (455) T PRK12422 195 RFRSFYRNVDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLI 238 (455) T ss_pred HHHHHHHCCCEEEEEHHHHHHCCHHHHHHHHHHHHHHHHCCCEE T ss_conf 99999963887763147887284889999999999999859969 No 123 >COG0066 LeuD 3-isopropylmalate dehydratase small subunit [Amino acid transport and metabolism] Probab=24.78 E-value=60 Score=15.76 Aligned_cols=42 Identities=26% Similarity=0.344 Sum_probs=37.1 Q ss_pred CCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEEEE Q ss_conf 028975999920045738899999999978997899999983 Q gi|254780309|r 14 HVAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILTFSR 55 (59) Q Consensus 14 ~i~gk~vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~~lar 55 (59) ..++-+||+.-+-.-.|++=++|.-.|+..|.+.|..=++|+ T Consensus 59 ~yq~g~IlVag~NFGcGSSREHApwALk~~Gi~~VIA~SFAd 100 (191) T COG0066 59 PYQGGDILVAGENFGCGSSREHAPWALKDYGIRAVIAPSFAD 100 (191) T ss_pred CCCCCCEEEECCCCCCCCCHHHHHHHHHHCCEEEEEECCHHH T ss_conf 667864899668877885277899999975924999362999 No 124 >cd01579 AcnA_Bact_Swivel Bacterial Aconitase-like swivel domain. Aconitase (aconitate hydratase or citrate hydrolyase) catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. Cis-aconitate is formed as an intermediate product during the course of the reaction. This is the aconitase-like swivel domain, which is believed to undergo swivelling conformational change in the enzyme mechanism. This distinct subfamily is found only in bacteria and archea. Its exact characteristics are not known. Probab=24.64 E-value=51 Score=16.13 Aligned_cols=40 Identities=28% Similarity=0.366 Sum_probs=34.2 Q ss_pred CCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEEEE Q ss_conf 8975999920045738899999999978997899999983 Q gi|254780309|r 16 AGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILTFSR 55 (59) Q Consensus 16 ~gk~vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~~lar 55 (59) .+..|++-.+-+=+|++=.++...|+..|.+.|..-.++| T Consensus 47 ~~~~IiVaG~NFG~GSSRE~A~~al~~~Gi~aVIA~SFar 86 (121) T cd01579 47 AGPGFIVGGENYGQGSSREHAALAPMYLGVRAVLAKSFAR 86 (121) T ss_pred CCCEEEEECCCCCCCCCHHHHHHHHHHCCCEEEEEHHHHH T ss_conf 8981999667567897289999999983945999758999 No 125 >COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism] Probab=24.60 E-value=70 Score=15.37 Aligned_cols=39 Identities=21% Similarity=0.325 Sum_probs=32.1 Q ss_pred CHHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEE Q ss_conf 1021002897599992004573889999999997899789999 Q gi|254780309|r 9 QYVSKHVAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSIL 51 (59) Q Consensus 9 ~~~~~~i~gk~vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~ 51 (59) +....+++++++++|- -|-+..-+++.|.++|...|+++ T Consensus 170 ~~~~~~L~~~~vlvIG----AGem~~lva~~L~~~g~~~i~Ia 208 (414) T COG0373 170 KRIFGSLKDKKVLVIG----AGEMGELVAKHLAEKGVKKITIA 208 (414) T ss_pred HHHHCCCCCCEEEEEC----CCHHHHHHHHHHHHCCCCEEEEE T ss_conf 9983654467699986----51899999999985898779997 No 126 >COG1204 Superfamily II helicase [General function prediction only] Probab=23.91 E-value=73 Score=15.30 Aligned_cols=43 Identities=16% Similarity=0.434 Sum_probs=35.4 Q ss_pred CCCEEEEEEECC-----CCCHHHHHHHHHHHHCCCCEEEEEEEEEECCC Q ss_conf 897599992004-----57388999999999789978999999830689 Q gi|254780309|r 16 AGLKILLIDDVY-----TTGATAKCAAIALKKAGAMTVSILTFSRSLKD 59 (59) Q Consensus 16 ~gk~vliVDDii-----tTG~T~~~~~~~L~~~ga~~V~~~~lar~~~~ 59 (59) ..=.+++||+|- +.|.|+..+...++..+.. +.++.|..|++| T Consensus 145 ~~V~lvViDEiH~l~d~~RG~~lE~iv~r~~~~~~~-~rivgLSATlpN 192 (766) T COG1204 145 EEVDLVVIDEIHLLGDRTRGPVLESIVARMRRLNEL-IRIVGLSATLPN 192 (766) T ss_pred HCCCEEEEEEEEECCCCCCCCEEHHHHHHHHHHCCC-EEEEEEEEECCC T ss_conf 401689994210148756586402279888852755-179887311688 No 127 >PRK00258 aroE shikimate 5-dehydrogenase; Reviewed Probab=23.01 E-value=76 Score=15.20 Aligned_cols=35 Identities=26% Similarity=0.550 Sum_probs=29.9 Q ss_pred CCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEE Q ss_conf 028975999920045738899999999978997899999 Q gi|254780309|r 14 HVAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILT 52 (59) Q Consensus 14 ~i~gk~vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~~ 52 (59) ..++|+++|+ =.|.+..+++-.|.+.|+++|+++. T Consensus 119 ~~~~k~vlIl----GaGGaarai~~al~~~g~~~i~i~n 153 (275) T PRK00258 119 DLKGKRILLL----GAGGAARAVILPLLELGVAEITIVN 153 (275) T ss_pred CCCCCEEEEE----CCCCHHHHHHHHHHHCCCCEEEEEE T ss_conf 8568759998----8871079999999976999899995 No 128 >cd01524 RHOD_Pyr_redox Member of the Rhodanese Homology Domain superfamily. Included in this CD are the Lactococcus lactis NADH oxidase, Bacillus cereus NADH dehydrogenase, and Bacteroides thetaiotaomicron pyridine nucleotide-disulphide oxidoreductase, and similar rhodanese-like domains found C-terminal of the pyridine nucleotide-disulphide oxidoreductase (Pyr-redox) domain and the Pyr-redox dimerization domain. Probab=22.69 E-value=77 Score=15.16 Aligned_cols=32 Identities=25% Similarity=0.261 Sum_probs=26.0 Q ss_pred CCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEE Q ss_conf 897599992004573889999999997899789999 Q gi|254780309|r 16 AGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSIL 51 (59) Q Consensus 16 ~gk~vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~ 51 (59) +++++++ +..+|..-..+++.|++.|- +|+.+ T Consensus 50 k~~~ivv---~C~~G~rS~~aa~~L~~~G~-~v~~l 81 (90) T cd01524 50 KDKEIIV---YCAVGLRGYIAARILTQNGF-KVKNL 81 (90) T ss_pred CCCEEEE---ECCCCCHHHHHHHHHHHCCC-CEEEE T ss_conf 5870999---88998059999999998699-88996 No 129 >TIGR02281 DTGA conserved hypothetical protein TIGR02281; InterPro: IPR011969 This entry consists of proteins of unknown function, typically from 180 to 230 amino acids in length. This entry describes the well-conserved 121-residue C-terminal region. The poorly conserved, variable length N-terminal region usually contains a predicted transmembrane helix. . Probab=22.47 E-value=46 Score=16.35 Aligned_cols=32 Identities=25% Similarity=0.212 Sum_probs=22.4 Q ss_pred CCEEEECCHHHHCCCCCEEEEEEECCCCCHHHHHHHHHH Q ss_conf 760882510210028975999920045738899999999 Q gi|254780309|r 2 RNAFNVPQYVSKHVAGLKILLIDDVYTTGATAKCAAIAL 40 (59) Q Consensus 2 ~gaf~i~~~~~~~i~gk~vliVDDiitTG~T~~~~~~~L 40 (59) +|.|.+.-. |.||.| +=++|||+|.....+.= T Consensus 9 ~GHF~~~~~----vNG~~v---~flvDTGAt~VaL~~~~ 40 (121) T TIGR02281 9 DGHFAATGR----VNGRAV---DFLVDTGATSVALNEED 40 (121) T ss_pred CCEEEEEEE----ECCEEE---EEEEECCCCEEECCHHH T ss_conf 983899988----789498---89982587427818258 No 130 >cd01577 IPMI_Swivel Aconatase-like swivel domain of 3-isopropylmalate dehydratase and related uncharacterized proteins. 3-isopropylmalate dehydratase catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate 3-isopropylmalate. IPMI is involved in fungal and bacterial leucine biosynthesis and is also found in eukaryotes. This is the aconitase-like swivel domain, which is believed to undergo swivelling conformational change in the enzyme mechanism. Probab=22.00 E-value=62 Score=15.67 Aligned_cols=38 Identities=29% Similarity=0.393 Sum_probs=33.7 Q ss_pred CEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEEEE Q ss_conf 75999920045738899999999978997899999983 Q gi|254780309|r 18 LKILLIDDVYTTGATAKCAAIALKKAGAMTVSILTFSR 55 (59) Q Consensus 18 k~vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~~lar 55 (59) .+|++..+-.-+|++=.++...|+..|.+.|..-.+|+ T Consensus 18 ~~Ilvag~NFG~GSSREhA~~al~~~Gi~~VIa~SFa~ 55 (91) T cd01577 18 GDIIVAGKNFGCGSSREHAPWALKDAGIRAVIAESFAR 55 (91) T ss_pred CCEEEECCCCCCCCCHHHHHHHHHHCCCEEEEEHHHHH T ss_conf 46899568657785289999999984954999723999 No 131 >TIGR01137 cysta_beta cystathionine beta-synthase; InterPro: IPR005857 This model discriminates cystathionine beta-synthase, a protein found primarily in eukaryotes and carrying a C-terminal CBS domain from cysteine synthases. Cysteine synthase (O-acetylserine (thiol)-lyase) is the enzyme responsible for the formation of cysteine from O-acetyl-serine and hydrogen sulphide with the concomitant release of acetic acid - the function of many of these enzymes is unproven.; GO: 0004122 cystathionine beta-synthase activity, 0019343 cysteine biosynthetic process via cystathionine, 0005737 cytoplasm. Probab=21.80 E-value=69 Score=15.41 Aligned_cols=25 Identities=32% Similarity=0.183 Sum_probs=17.7 Q ss_pred CCCCCHHHHHHHHHHHHCCCCEEEE Q ss_conf 0457388999999999789978999 Q gi|254780309|r 26 VYTTGATAKCAAIALKKAGAMTVSI 50 (59) Q Consensus 26 iitTG~T~~~~~~~L~~~ga~~V~~ 50 (59) -+=||.|++-++++||+.....|.+ T Consensus 186 g~GTGGTItGi~ryLK~~~~~~~~i 210 (527) T TIGR01137 186 GVGTGGTITGIARYLKDESNPKVRI 210 (527) T ss_pred CCCCCCHHHHHHHHHHHCCCCCEEE T ss_conf 0578831554556543213893389 No 132 >TIGR01342 acon_putative aconitate hydratase, putative; InterPro: IPR006250 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop , . Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) . Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway . The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) , . As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated . IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis . Although IRP2 is homologous to IRP1, IPR2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes . In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica , . In S.enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. This entry represents a small family of proteins homologous and likely functionally equivalent to aconitase 1. Members are found, so far in the anaerobe Clostridium acetobutylicum, in the microaerophilic, early-branching bacterium Aquifex aeolicus, and in the halophilic archaeon Halobacterium sp. NRC-1. No member is experimentally characterised. More information about these proteins can be found at Protein of the Month: Aconitase .. Probab=21.76 E-value=31 Score=17.26 Aligned_cols=49 Identities=27% Similarity=0.245 Sum_probs=35.8 Q ss_pred ECCHHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHC-CCCEEEEEEEEE Q ss_conf 2510210028975999920045738899999999978-997899999983 Q gi|254780309|r 7 VPQYVSKHVAGLKILLIDDVYTTGATAKCAAIALKKA-GAMTVSILTFSR 55 (59) Q Consensus 7 i~~~~~~~i~gk~vliVDDiitTG~T~~~~~~~L~~~-ga~~V~~~~lar 55 (59) ..+++..+++|-..|++.|-|||-.-+=+.++.|+-+ +...+.=++++| T Consensus 463 ~~~PL~~~~~GE~~L~~~DNITTDHI~PA~~~IL~lRSNI~~~SEy~~~~ 512 (658) T TIGR01342 463 VKDPLGEDVRGEVLLKVEDNITTDHIIPATADILKLRSNIEALSEYVLSR 512 (658) T ss_pred CCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH T ss_conf 86868885210188997157652532566410110134578875575420 No 133 >PRK00149 dnaA chromosomal replication initiation protein; Reviewed Probab=21.62 E-value=30 Score=17.35 Aligned_cols=39 Identities=21% Similarity=0.170 Sum_probs=23.7 Q ss_pred HHHHCCCCCEEEEEEECCCC---CH---HHHHHHHHHHHCCCCEE Q ss_conf 02100289759999200457---38---89999999997899789 Q gi|254780309|r 10 YVSKHVAGLKILLIDDVYTT---GA---TAKCAAIALKKAGAMTV 48 (59) Q Consensus 10 ~~~~~i~gk~vliVDDiitT---G~---T~~~~~~~L~~~ga~~V 48 (59) .++...++-++||||||=-= .. -+-+..+.|.+.|-.-| T Consensus 201 ~Fr~~yr~~DvLliDDiqfl~gk~~tqeeff~~fn~l~~~~kqiv 245 (447) T PRK00149 201 EFKEKYRSVDVLLIDDIQFLAGKEKTQEEFFHTFNALHENNKQIV 245 (447) T ss_pred HHHHHHHCCCEEEECHHHHHHCCHHHHHHHHHHHHHHHHCCCEEE T ss_conf 999999728854321488860557799999999999998499689 No 134 >COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism] Probab=20.49 E-value=86 Score=14.90 Aligned_cols=35 Identities=31% Similarity=0.644 Sum_probs=30.0 Q ss_pred CCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEE Q ss_conf 028975999920045738899999999978997899999 Q gi|254780309|r 14 HVAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILT 52 (59) Q Consensus 14 ~i~gk~vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~~ 52 (59) +++|++++|+ =.|.+..+++-.|.+.|+++|.++- T Consensus 123 ~~~~~~vlil----GAGGAarAv~~aL~~~g~~~i~V~N 157 (283) T COG0169 123 DVTGKRVLIL----GAGGAARAVAFALAEAGAKRITVVN 157 (283) T ss_pred CCCCCEEEEE----CCCHHHHHHHHHHHHCCCCEEEEEE T ss_conf 6678889998----9768999999999986998799995 Done!