HHsearch results for GI: 254780309 and protein with PDBid: 1ufr_A

>1ufr_A TT1027, PYR mRNA-binding attenuation protein; pyrimidine nucleotide biosynthesis, transcriptional attenuation, RNA-binding protein; 2.60A {Thermus thermophilus} SCOP: c.61.1.1

Probab=98.84  E-value=4.7e-09  Score=69.20  Aligned_cols=50  Identities=28%  Similarity=0.351  Sum_probs=41.7

Q ss_pred             ECCHHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHCC-CCEEEEEEEEEE
Q ss_conf             25102100289759999200457388999999999789-978999999830
Q gi|254780309|r    7 VPQYVSKHVAGLKILLIDDVYTTGATAKCAAIALKKAG-AMTVSILTFSRS   56 (59)
Q Consensus         7 i~~~~~~~i~gk~vliVDDiitTG~T~~~~~~~L~~~g-a~~V~~~~lar~   56 (59)
                      +......+++||+|||||||++||.||.++.+.|.+.| ++.+.+++|...
T Consensus        86 ~~~~~~~~l~gk~VLIVDDIlDTG~TL~~~~~~l~~~g~~~~v~~avL~kk  136 (181)
T 1ufr_A           86 RETRIPFDLTGKAIVLVDDVLYTGRTARAALDALIDLGRPRRIYLAVLVDR  136 (181)
T ss_dssp             EEEEECSCCTTCEEEEEEEEESSSHHHHHHHHHHHHHCCCSEEEEEEEEEC
T ss_pred             ECCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEEEEECC
T ss_conf             135677665685699984202656069999999987399956999999738