Query gi|254780309|ref|YP_003064722.1| comF family protein [Candidatus Liberibacter asiaticus str. psy62] Match_columns 59 No_of_seqs 104 out of 2972 Neff 6.1 Searched_HMMs 23785 Date Mon May 30 08:14:25 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780309.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 2ji4_A Phosphoribosyl pyrophos 99.1 3.1E-10 1.3E-14 75.6 7.1 46 13-58 268-313 (379) 2 1wd5_A Hypothetical protein TT 99.0 2.1E-10 8.8E-15 76.5 5.9 43 12-54 115-157 (208) 3 1pzm_A HGPRT, hypoxanthine-gua 99.0 3.1E-10 1.3E-14 75.5 6.4 52 4-55 105-156 (211) 4 3hvu_A Hypoxanthine phosphorib 99.0 5E-10 2.1E-14 74.4 7.0 53 3-55 102-154 (204) 5 1tc1_A Protein (hypoxanthine p 99.0 5.4E-10 2.3E-14 74.2 6.1 48 8-55 94-141 (220) 6 3dah_A Ribose-phosphate pyroph 99.0 7.2E-10 3E-14 73.6 6.7 48 11-58 210-257 (319) 7 1fsg_A HGPRTASE, hypoxanthine- 99.0 9.5E-10 4E-14 72.9 7.3 49 7-55 132-180 (233) 8 2h06_A Ribose-phosphate pyroph 99.0 5.4E-10 2.3E-14 74.2 6.0 48 11-58 207-254 (326) 9 1cjb_A Protein (hypoxanthine-g 99.0 6.1E-10 2.6E-14 73.9 6.2 49 7-55 127-175 (231) 10 1yfz_A Hypoxanthine-guanine ph 99.0 9E-10 3.8E-14 73.1 6.9 53 3-55 104-156 (205) 11 1dku_A Protein (phosphoribosyl 99.0 5.1E-10 2.1E-14 74.4 5.4 47 12-58 212-258 (317) 12 1vdm_A Purine phosphoribosyltr 99.0 6.9E-10 2.9E-14 73.7 5.9 47 10-56 76-122 (153) 13 2jbh_A HHGP; glycosyltransfera 99.0 1.1E-09 4.7E-14 72.6 6.8 46 10-55 127-172 (225) 14 3o7m_A Hypoxanthine phosphorib 99.0 1.3E-09 5.5E-14 72.2 6.8 50 6-55 83-132 (186) 15 1u9y_A RPPK;, ribose-phosphate 98.9 1.1E-09 4.5E-14 72.7 6.2 47 12-58 200-246 (284) 16 1z7g_A HGPRT, HGPRTASE, hypoxa 98.9 1.3E-09 5.4E-14 72.2 6.5 46 10-55 119-164 (217) 17 2geb_A Hypoxanthine-guanine ph 98.9 1.6E-09 6.9E-14 71.6 6.7 50 6-55 87-136 (185) 18 3ohp_A Hypoxanthine phosphorib 98.9 1.3E-09 5.3E-14 72.2 5.8 49 7-55 81-129 (177) 19 2ywu_A Hypoxanthine-guanine ph 98.9 1.7E-09 7.1E-14 71.6 5.9 49 7-55 85-133 (181) 20 1hgx_A HGXPRTASE, hypoxanthine 98.9 2.1E-09 8.8E-14 71.1 6.1 50 6-55 84-133 (183) 21 1a3c_A PYRR, pyrimidine operon 98.9 2.6E-09 1.1E-13 70.5 6.4 46 10-55 91-137 (181) 22 1vch_A Phosphoribosyltransfera 98.9 4.3E-09 1.8E-13 69.4 7.1 45 12-56 115-159 (175) 23 1ufr_A TT1027, PYR mRNA-bindin 98.8 4.7E-09 2E-13 69.2 6.5 50 7-56 86-136 (181) 24 1dqn_A Guanine phosphoribosylt 98.7 1.2E-09 5.2E-14 72.3 -0.1 51 3-53 104-154 (230) 25 1w30_A PYRR bifunctional prote 98.7 2.4E-08 1E-12 65.3 6.2 45 11-55 106-151 (201) 26 2jky_A Hypoxanthine-guanine ph 98.6 1.4E-09 6E-14 72.0 -2.4 39 11-49 96-134 (213) 27 1g2q_A Adenine phosphoribosylt 98.6 9.6E-08 4E-12 62.1 5.9 40 15-54 120-159 (187) 28 1ecf_A Glutamine phosphoribosy 98.5 7.2E-08 3E-12 62.8 4.8 48 11-58 353-400 (504) 29 1qb7_A APRT, adenine phosphori 98.5 2.1E-07 8.8E-12 60.3 5.9 40 15-54 136-175 (236) 30 1ao0_A Glutamine phosphoribosy 98.5 1.5E-07 6.4E-12 61.0 5.0 47 11-57 332-378 (459) 31 2p1z_A Phosphoribosyltransfera 98.5 2.1E-07 8.7E-12 60.3 5.5 40 15-54 112-151 (180) 32 1y0b_A Xanthine phosphoribosyl 98.4 4E-07 1.7E-11 58.7 7.0 41 15-55 118-158 (197) 33 2wns_A Orotate phosphoribosylt 98.4 2.2E-07 9.1E-12 60.2 5.0 40 15-54 109-148 (205) 34 1o57_A PUR operon repressor; p 98.4 3.6E-07 1.5E-11 59.0 6.0 42 14-55 193-234 (291) 35 2yzk_A OPRT, oprtase, orotate 98.4 4.1E-07 1.7E-11 58.7 6.1 42 13-54 102-143 (178) 36 2ps1_A Orotate phosphoribosylt 98.4 4.2E-07 1.8E-11 58.6 6.0 40 15-54 123-162 (226) 37 1zn8_A APRT, adenine phosphori 98.4 4.7E-07 2E-11 58.4 6.0 40 15-54 118-157 (180) 38 3m3h_A OPRT, oprtase, orotate 98.4 5.3E-07 2.2E-11 58.1 6.0 40 15-54 135-174 (234) 39 2dy0_A APRT, adenine phosphori 98.4 5.7E-07 2.4E-11 57.9 5.9 39 16-54 125-163 (190) 40 3mjd_A Orotate phosphoribosylt 98.4 5.2E-07 2.2E-11 58.1 5.6 40 15-54 134-173 (232) 41 1l1q_A Adenine phosphoribosylt 98.3 7.1E-07 3E-11 57.4 5.3 39 15-53 115-155 (186) 42 3dez_A OPRT, oprtase, orotate 98.3 9.5E-07 4E-11 56.7 6.0 40 15-54 147-186 (243) 43 2aee_A OPRT, oprtase, orotate 98.2 1.6E-06 6.8E-11 55.5 5.9 40 15-54 115-154 (211) 44 3n2l_A OPRT, oprtase, orotate 98.2 2.3E-06 9.7E-11 54.6 6.1 39 16-54 141-179 (238) 45 1lh0_A OMP synthase; loop clos 98.1 4.7E-06 2E-10 53.0 5.4 40 16-55 116-155 (213) 46 1nul_A XPRT, xanthine-guanine 98.0 1.4E-06 5.9E-11 55.8 2.0 37 13-54 77-113 (152) 47 2ehj_A Uracil phosphoribosyltr 97.9 2.2E-05 9.3E-10 49.3 6.9 49 8-56 114-162 (208) 48 1o5o_A Uracil phosphoribosyltr 97.9 1.3E-05 5.6E-10 50.5 5.2 49 8-56 127-175 (221) 49 1i5e_A Uracil phosphoribosyltr 97.8 2.6E-05 1.1E-09 48.9 5.2 49 8-56 115-163 (209) 50 1v9s_A Uracil phosphoribosyltr 97.8 1.8E-05 7.5E-10 49.8 4.3 48 9-56 115-162 (208) 51 1bd3_D Uprtase, uracil phospho 97.5 0.00011 4.5E-09 45.6 4.9 49 7-55 146-196 (243) 52 2e55_A Uracil phosphoribosyltr 97.5 0.00017 7.1E-09 44.6 5.5 44 13-56 117-160 (208) 53 3dmp_A Uracil phosphoribosyltr 97.3 0.00013 5.4E-09 45.2 3.5 44 12-55 124-169 (217) 54 1xtt_A Probable uracil phospho 97.0 0.00057 2.4E-08 41.7 4.5 41 16-56 132-172 (216) 55 1dcf_A ETR1 protein; beta-alph 78.1 2.9 0.00012 21.7 4.7 32 13-47 3-34 (136) 56 3eod_A Protein HNR; response r 59.3 11 0.00046 18.6 4.7 31 15-48 5-35 (130) 57 1gmx_A GLPE protein; transfera 50.9 14 0.00058 18.0 3.7 34 15-51 56-89 (108) 58 3ohg_A Uncharacterized protein 45.2 13 0.00056 18.1 2.9 34 16-49 197-237 (285) 59 2pkp_A Homoaconitase small sub 44.8 7.1 0.0003 19.6 1.4 48 8-55 42-89 (170) 60 3h5i_A Response regulator/sens 43.0 19 0.00078 17.3 3.3 29 15-46 3-31 (140) 61 1wif_A RSGI RUH-020, riken cDN 42.5 21 0.00087 17.1 3.6 41 15-55 68-109 (126) 62 3ilm_A ALR3790 protein; rhodan 42.2 21 0.00089 17.0 4.1 33 16-51 55-87 (141) 63 3gge_A PDZ domain-containing p 41.9 21 0.00089 17.0 4.9 43 16-58 49-91 (95) 64 2yt7_A Amyloid beta A4 precurs 41.4 22 0.00091 17.0 4.5 45 14-58 55-100 (101) 65 2fsx_A RV0390, COG0607: rhodan 40.1 23 0.00096 16.8 3.7 33 16-51 79-111 (148) 66 2kom_A Partitioning defective 38.9 24 0.001 16.7 4.6 41 16-56 79-119 (121) 67 2vsv_A Rhophilin-2; scaffold p 38.4 24 0.001 16.7 3.6 41 15-55 63-103 (109) 68 1vr0_A Probable 2-phosphosulfo 38.0 25 0.001 16.7 3.6 35 12-51 26-60 (247) 69 1qxn_A SUD, sulfide dehydrogen 37.6 24 0.001 16.7 3.2 34 15-51 80-113 (137) 70 2jba_A Phosphate regulon trans 36.3 26 0.0011 16.5 4.5 27 17-46 2-28 (127) 71 1tq1_A AT5G66040, senescence-a 36.1 24 0.001 16.7 3.0 33 16-51 81-113 (129) 72 1gpj_A Glutamyl-tRNA reductase 34.9 25 0.001 16.6 2.9 38 10-51 160-197 (404) 73 2vsp_A PDZ domain-containing p 33.5 29 0.0012 16.2 3.6 40 16-56 47-86 (91) 74 1u7z_A Coenzyme A biosynthesis 32.3 31 0.0013 16.1 4.4 39 13-51 4-55 (226) 75 3bpu_A Membrane-associated gua 31.3 32 0.0013 16.0 4.7 42 16-57 45-86 (88) 76 3lte_A Response regulator; str 31.2 32 0.0014 16.0 4.4 28 16-46 5-32 (132) 77 3hix_A ALR3790 protein; rhodan 30.9 33 0.0014 16.0 4.1 33 16-51 51-83 (106) 78 2hcu_A 3-isopropylmalate dehyd 30.8 17 0.00071 17.5 1.5 43 13-55 81-123 (213) 79 1qo0_D AMIR; binding protein, 30.3 33 0.0014 15.9 3.5 40 10-52 5-44 (196) 80 3kht_A Response regulator; PSI 30.0 18 0.00076 17.4 1.6 29 15-46 3-31 (144) 81 1yt8_A Thiosulfate sulfurtrans 28.0 37 0.0015 15.7 4.2 33 16-51 62-94 (539) 82 3h5j_A 3-isopropylmalate dehyd 26.3 18 0.00074 17.4 1.0 43 13-55 60-102 (171) 83 2d92_A INAD-like protein; PDZ 25.4 41 0.0017 15.5 4.7 41 15-56 63-104 (108) 84 1v7l_A 3-isopropylmalate dehyd 25.4 12 0.0005 18.4 -0.0 48 8-55 42-89 (163) 85 1u37_A Amyloid beta A4 precurs 24.7 42 0.0018 15.4 3.8 41 15-55 48-89 (89) 86 3h1g_A Chemotaxis protein CHEY 24.7 43 0.0018 15.4 3.7 33 15-50 3-35 (129) 87 2k0z_A Uncharacterized protein 24.4 43 0.0018 15.3 4.5 32 15-49 54-85 (110) 88 2vdc_G Glutamate synthase [NAD 24.1 44 0.0018 15.3 5.5 34 15-52 262-295 (456) 89 2yyv_A Probable 2-phosphosulfo 24.1 44 0.0018 15.3 3.4 34 13-51 10-43 (227) 90 1tks_A 3,4-dihydroxy-2-butanon 24.0 12 0.0005 18.4 -0.3 11 15-25 16-26 (204) 91 3d1p_A Putative thiosulfate su 23.9 44 0.0019 15.3 4.2 33 16-51 90-122 (139) 92 1uep_A Membrane associated gua 23.4 39 0.0017 15.6 2.3 41 16-56 55-95 (103) 93 2koj_A Partitioning defective 23.2 46 0.0019 15.2 4.9 42 16-57 60-101 (111) 94 1qys_A TOP7; alpha-beta, novel 22.2 33 0.0014 16.0 1.7 40 17-57 14-57 (106) 95 1ujv_A Membrane associated gua 21.6 49 0.0021 15.0 4.3 40 16-55 50-89 (96) 96 1wfg_A Regulating synaptic mem 21.2 50 0.0021 15.0 4.7 44 15-58 84-128 (131) 97 3c97_A Signal transduction his 20.9 51 0.0021 15.0 3.8 31 13-46 6-36 (140) 98 1vae_A Rhophilin 2, rhophilin, 20.9 51 0.0021 14.9 4.5 39 16-54 56-94 (111) 99 2q9v_A Membrane-associated gua 20.8 39 0.0016 15.6 1.9 40 16-55 48-87 (90) 100 2rdm_A Response regulator rece 20.6 52 0.0022 14.9 4.7 20 19-38 52-74 (132) 101 2jvf_A De novo protein M7; tet 20.5 37 0.0015 15.7 1.7 37 21-57 19-59 (96) 102 3i42_A Response regulator rece 20.2 34 0.0014 15.9 1.5 27 16-45 2-28 (127) No 1 >2ji4_A Phosphoribosyl pyrophosphate synthetase-associated protein 2; phosphorylation, nucleotide biosynthesis, transferase; 2.55A {Homo sapiens} PDB: 2c4k_A* Probab=99.06 E-value=3.1e-10 Score=75.59 Aligned_cols=46 Identities=24% Similarity=0.320 Sum_probs=42.4 Q ss_pred HCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEEEEECC Q ss_conf 0028975999920045738899999999978997899999983068 Q gi|254780309|r 13 KHVAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILTFSRSLK 58 (59) Q Consensus 13 ~~i~gk~vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~~lar~~~ 58 (59) .+++||+|+|||||++||.|+.++++.|++.||++|++++.+..++ T Consensus 268 GDVkGk~vIIVDDiIdTGgTl~~aa~~Lk~~GA~~V~~~~THgvfs 313 (379) T 2ji4_A 268 GDVGGRIAIIVDDIIDDVDSFLAAAETLKERGAYKIFVMATHGLLS 313 (379) T ss_dssp SCCTTSEEEEEEEEECSCHHHHHHHHHHHHTTCCEEEEEEEEECCC T ss_pred ECEEEEEEEEECCHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCC T ss_conf 0120038999543433126699999999976998379999797688 No 2 >1wd5_A Hypothetical protein TT1426; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; HET: MES; 2.00A {Thermus thermophilus} SCOP: c.61.1.1 Probab=99.05 E-value=2.1e-10 Score=76.47 Aligned_cols=43 Identities=23% Similarity=0.288 Sum_probs=39.5 Q ss_pred HHCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEEE Q ss_conf 1002897599992004573889999999997899789999998 Q gi|254780309|r 12 SKHVAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILTFS 54 (59) Q Consensus 12 ~~~i~gk~vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~~la 54 (59) ..+++||+|+||||+++||+||.++++.|+++||++|++++.. T Consensus 115 ~~~v~Gk~ViLVDD~i~TG~Tm~aa~~~L~~~ga~~v~~a~pv 157 (208) T 1wd5_A 115 KAARKGRDVVLVDDGVATGASMEAALSVVFQEGPRRVVVAVPV 157 (208) T ss_dssp CCCCTTSEEEEECSCBSSCHHHHHHHHHHHTTCCSEEEEEEEE T ss_pred CCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEEEEE T ss_conf 7455787899971513358999999999997699989999985 No 3 >1pzm_A HGPRT, hypoxanthine-guanine phosphoribosyltransferase; HET: 5GP; 2.10A {Leishmania tarentolae} SCOP: c.61.1.1 Probab=99.04 E-value=3.1e-10 Score=75.55 Aligned_cols=52 Identities=12% Similarity=0.153 Sum_probs=45.3 Q ss_pred EEEECCHHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEEEE Q ss_conf 0882510210028975999920045738899999999978997899999983 Q gi|254780309|r 4 AFNVPQYVSKHVAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILTFSR 55 (59) Q Consensus 4 af~i~~~~~~~i~gk~vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~~lar 55 (59) ...+..+...+++||+|||||||++||.|+.++.+.|++.||++|.+++|.. T Consensus 105 ~~~~~~~~~~~l~gk~VlIVDDIlDTG~TL~~~~~~l~~~g~~sv~~avLl~ 156 (211) T 1pzm_A 105 QVRMLLDVRDSVENRHIMLVEDIVDSAITLQYLMRFMLAKKPASLKTVVLLD 156 (211) T ss_dssp ---CCBCCSSCCTTCEEEEEEEEESSCHHHHHHHHHHHTTCCSEEEEEEEEE T ss_pred EEEECCCCCHHHHHCEEEEEECCCCCCCHHHHHHHHHHHCCCCEEEEEEEEE T ss_conf 1576157603332021589731133661699999999836999799999998 No 4 >3hvu_A Hypoxanthine phosphoribosyltransferase; hypoxantine-guanine phosphoribosyltransferase, 2-(N- morpholino)ethanesulfonic acid (MES); HET: MES; 1.95A {Bacillus anthracis str} PDB: 3h83_A* 3kb8_A* Probab=99.02 E-value=5e-10 Score=74.41 Aligned_cols=53 Identities=23% Similarity=0.328 Sum_probs=46.8 Q ss_pred CEEEECCHHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEEEE Q ss_conf 60882510210028975999920045738899999999978997899999983 Q gi|254780309|r 3 NAFNVPQYVSKHVAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILTFSR 55 (59) Q Consensus 3 gaf~i~~~~~~~i~gk~vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~~lar 55 (59) |...+..+...+++||+|||||||++||.|+.++.+.|.+.|++++..++|.- T Consensus 102 ~~v~~~~~~~~~i~gk~VLlVDDIlDTG~Tl~~~~~~l~~~~p~sv~~avLl~ 154 (204) T 3hvu_A 102 GEVKILKDLDTSVEGRDILIVEDIIDSGLTLSYLVDLFKYRKAKSVKIVTLLD 154 (204) T ss_dssp CCEEEEECCSSCCTTCEEEEEEEEESSCHHHHHHHHHHHHTTCSEEEEEEEEE T ss_pred CCEEEECCCCCCCCCCEEEEEEEEECHHHHHHHHHHHHHHCCCCCEEEEEEEE T ss_conf 84688147885769998999702430749999999999964998168999999 No 5 >1tc1_A Protein (hypoxanthine phosphoribosyltransferase); transferase,phosphoribosyltransferase, purine salvage, nucleotide metabolism; HET: FMB MES; 1.41A {Trypanosoma cruzi} SCOP: c.61.1.1 PDB: 1tc2_A* 1p19_A* 1p18_A* 1p17_A* 1i0l_A* 1i14_A* 1i0i_A* 1i13_A* Probab=98.99 E-value=5.4e-10 Score=74.23 Aligned_cols=48 Identities=10% Similarity=0.144 Sum_probs=42.9 Q ss_pred CCHHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEEEE Q ss_conf 510210028975999920045738899999999978997899999983 Q gi|254780309|r 8 PQYVSKHVAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILTFSR 55 (59) Q Consensus 8 ~~~~~~~i~gk~vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~~lar 55 (59) ..+...+++||+|||||||++||.|+.++.+.|++.|+++|.+++|.- T Consensus 94 ~~~~~~~l~gk~VLIVDDIlDTG~TL~~~~~~L~~~~p~sv~~avLl~ 141 (220) T 1tc1_A 94 LLDTRHSIEGHHVLIVEDIVDTALTLNYLYHMYFTRRPASLKTVVLLD 141 (220) T ss_dssp EECCSSCCTTSEEEEEEEEESSCHHHHHHHHHHHTTCCSEEEEEEEEE T ss_pred CCCCCCCCCCCEEEEEEEEECHHHHHHHHHHHHHHCCCCEEEEEEEEE T ss_conf 046873425876799830420749999999999830999689999997 No 6 >3dah_A Ribose-phosphate pyrophosphokinase; seattle structural genomics center for infectious disease, ssgcid, cytoplasm, magnesium; HET: AMP; 2.30A {Burkholderia pseudomallei 1710B} Probab=98.99 E-value=7.2e-10 Score=73.58 Aligned_cols=48 Identities=29% Similarity=0.295 Sum_probs=43.2 Q ss_pred HHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEEEEECC Q ss_conf 210028975999920045738899999999978997899999983068 Q gi|254780309|r 11 VSKHVAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILTFSRSLK 58 (59) Q Consensus 11 ~~~~i~gk~vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~~lar~~~ 58 (59) ...+++||+|+|||||++||.|+..+++.|++.||++|++++.+..+. T Consensus 210 ~~gdv~gr~vIIVDDii~TGgTi~~aa~~Lk~~GA~~V~~~~THglfs 257 (319) T 3dah_A 210 IIGEVEGRTCVIMDDMVDTAGTLCKAAQVLKERGAKQVFAYATHPVLS 257 (319) T ss_dssp -----CCSEEEEEEEEESSCHHHHHHHHHHHHTTCSCEEEEEEEECCC T ss_pred CCCCCCCCEEEEECCHHCCCHHHHHHHHHHHHCCCCEEEEEEECCCCC T ss_conf 443437987897373440620199999999977998648997466448 No 7 >1fsg_A HGPRTASE, hypoxanthine-guanine phosphoribosyltransferase; glycosyltransferase, purine salvage; HET: PRP 9DG; 1.05A {Toxoplasma gondii RH} SCOP: c.61.1.1 PDB: 1qk3_A* 1qk4_A* 1qk5_A* 1dbr_A Probab=98.99 E-value=9.5e-10 Score=72.93 Aligned_cols=49 Identities=22% Similarity=0.233 Sum_probs=43.6 Q ss_pred ECCHHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEEEE Q ss_conf 2510210028975999920045738899999999978997899999983 Q gi|254780309|r 7 VPQYVSKHVAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILTFSR 55 (59) Q Consensus 7 i~~~~~~~i~gk~vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~~lar 55 (59) +.......++||+|||||||++||.|+.++.+.|++.|+++|.+++|.- T Consensus 132 ~~~~~~~~i~gk~VLIVDDIlDTG~TL~~~~~~L~~~~p~sv~~avLld 180 (233) T 1fsg_A 132 VLSDDLSIFRDKHVLIVEDIVDTGFTLTEFGERLKAVGPKSMRIATLVE 180 (233) T ss_dssp EECSCGGGGTTCEEEEEEEEESSSHHHHHHHHHHHTTCCSEEEEEEEEE T ss_pred ECCCCHHHHCCCEEEEECCEECHHHHHHHHHHHHHCCCCCCEEEEEEEE T ss_conf 2368767755873799523332879999999999730888158999998 No 8 >2h06_A Ribose-phosphate pyrophosphokinase I; PRS1, PRPP synthetase 1, phosphoribosyl pyrophosphate synthetase 1, transferase; 2.20A {Homo sapiens} PDB: 2hcr_A* 3efh_A 2h07_A 2h08_A Probab=98.99 E-value=5.4e-10 Score=74.25 Aligned_cols=48 Identities=27% Similarity=0.197 Sum_probs=43.5 Q ss_pred HHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEEEEECC Q ss_conf 210028975999920045738899999999978997899999983068 Q gi|254780309|r 11 VSKHVAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILTFSRSLK 58 (59) Q Consensus 11 ~~~~i~gk~vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~~lar~~~ 58 (59) ...+++||+++|||||++||.|+..+++.|++.||++|++++.+..++ T Consensus 207 ~~gdV~gk~vIIVDDii~TGgTl~~aa~~Lk~~GA~~V~~~aTHglfs 254 (326) T 2h06_A 207 LVGDVKDRVAILVDDMADTCGTICHAADKLLSAGATRVYAILTHGIFS 254 (326) T ss_dssp EESCCTTEEEEEEEEEESSCHHHHHHHHHHHHTTEEEEEEEEEEECCC T ss_pred EECCCCCCEEEEECCHHHCHHHHHHHHHHHHHCCCCCCEEEEECCCCC T ss_conf 621332440588641553326799999999857998656886434458 No 9 >1cjb_A Protein (hypoxanthine-guanine phosphoribosyltransferase); malaria, purine salvage, transition state inhibitor; HET: IRP; 2.00A {Plasmodium falciparum} SCOP: c.61.1.1 Probab=98.99 E-value=6.1e-10 Score=73.95 Aligned_cols=49 Identities=24% Similarity=0.219 Sum_probs=43.3 Q ss_pred ECCHHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEEEE Q ss_conf 2510210028975999920045738899999999978997899999983 Q gi|254780309|r 7 VPQYVSKHVAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILTFSR 55 (59) Q Consensus 7 i~~~~~~~i~gk~vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~~lar 55 (59) +......+++||+|||||||++||.|+.++.+.|++.||++|.+++|.- T Consensus 127 ~~~~~~~~i~gk~VLLVDDIlDTG~TL~~l~~~L~~~gpksv~vavLld 175 (231) T 1cjb_A 127 IVSEDLSCLKGKHVLIVEDIIDTGKTLVKFCEYLKKFEIKTVAIACLFI 175 (231) T ss_dssp EEESCGGGGBTCEEEEEEEEESSSHHHHHHHHHHGGGCBSEEEEEEEEE T ss_pred EECCCHHHHHHCCEEEEECCCCHHHHHHHHHHHHHCCCCCEEEEEEEEE T ss_conf 7247715454070799832100326999999999716999558884441 No 10 >1yfz_A Hypoxanthine-guanine phosphoribosyltransferase; protein-nucleotide complex; HET: IMP; 2.20A {Thermoanaerobacter tengcongensis MB4} SCOP: c.61.1.1 PDB: 1r3u_A* Probab=98.98 E-value=9e-10 Score=73.06 Aligned_cols=53 Identities=15% Similarity=0.225 Sum_probs=45.9 Q ss_pred CEEEECCHHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEEEE Q ss_conf 60882510210028975999920045738899999999978997899999983 Q gi|254780309|r 3 NAFNVPQYVSKHVAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILTFSR 55 (59) Q Consensus 3 gaf~i~~~~~~~i~gk~vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~~lar 55 (59) |...+..+...+++||+|||||||++||.|+.++.+.|++.|++++.+++|.. T Consensus 104 g~~~~~~~~~~~l~gk~VLlVDDIlDTG~TL~~~~~~l~~~~p~~i~~avL~d 156 (205) T 1yfz_A 104 GIVKIIKDHDIDIEGKDVLIVEDIIDSGLTLAYLRETLLGRKPRSLKICTILD 156 (205) T ss_dssp CCEEEEECCCSCCTTSEEEEEEEEESSCHHHHHHHHHHHTTCCSEEEEEEEEE T ss_pred CCEEEECCCCCCCCCCEEEEEECEECHHHHHHHHHHHHHHCCCCEEEEEEEEE T ss_conf 85578157664778997999933223569999999999863998077999998 No 11 >1dku_A Protein (phosphoribosyl pyrophosphate synthetase); open alpha-beta structure, domain duplication, phosphoribosyltransferase type I fold; HET: AP2 ABM; 2.20A {Bacillus subtilis} SCOP: c.61.1.2 c.61.1.2 PDB: 1dkr_A* 1ibs_A* Probab=98.97 E-value=5.1e-10 Score=74.39 Aligned_cols=47 Identities=32% Similarity=0.328 Sum_probs=42.0 Q ss_pred HHCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEEEEECC Q ss_conf 10028975999920045738899999999978997899999983068 Q gi|254780309|r 12 SKHVAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILTFSRSLK 58 (59) Q Consensus 12 ~~~i~gk~vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~~lar~~~ 58 (59) ..+++||+|+|||||++||.|+.++++.|+++||++|++++.+.... T Consensus 212 ~gdV~gk~vIIVDDii~TGgTl~~aa~~Lk~~GA~~V~~~~THglfs 258 (317) T 1dku_A 212 VGNIEGKTAILIDDIIDTAGTITLAANALVENGAKEVYACCTHPVLS 258 (317) T ss_dssp ESCCTTCEEEEECSEESSCHHHHHHHHHHHHTTCSEEEEECSEECCC T ss_pred CCCCCCCEEEEECCCCCCCCHHHHHHHHHHHCCCCEEEEEEECCCCC T ss_conf 23547978998675001460199999999976997789996534348 No 12 >1vdm_A Purine phosphoribosyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Pyrococcus horikoshii} SCOP: c.61.1.1 Probab=98.97 E-value=6.9e-10 Score=73.67 Aligned_cols=47 Identities=23% Similarity=0.371 Sum_probs=42.1 Q ss_pred HHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEEEEE Q ss_conf 02100289759999200457388999999999789978999999830 Q gi|254780309|r 10 YVSKHVAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILTFSRS 56 (59) Q Consensus 10 ~~~~~i~gk~vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~~lar~ 56 (59) +....++||+||||||+++||.|+.++.+.|++.||++|.+++|... T Consensus 76 ~~~~~~~gk~VLiVDDv~~TG~Tl~~~~~~l~~~ga~~v~~avL~~k 122 (153) T 1vdm_A 76 PIHGDLKDKRVVIVDDVSDTGKTLEVVIEEVKKLGAKEIKIACLAMK 122 (153) T ss_dssp CCCSCCBTCEEEEEEEEESSCHHHHHHHHHHHTTTBSEEEEEEEEEC T ss_pred CCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHCCCCEEEEEEEEEC T ss_conf 24323589989997253156847999999998659978999999998 No 13 >2jbh_A HHGP; glycosyltransferase, PRTFDC1, transferase, purine salvage; HET: 5GP; 1.7A {Homo sapiens} Probab=98.96 E-value=1.1e-09 Score=72.56 Aligned_cols=46 Identities=22% Similarity=0.281 Sum_probs=41.8 Q ss_pred HHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEEEE Q ss_conf 0210028975999920045738899999999978997899999983 Q gi|254780309|r 10 YVSKHVAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILTFSR 55 (59) Q Consensus 10 ~~~~~i~gk~vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~~lar 55 (59) +...+++||+|||||||++||.|+.++.+.|++.||++|.+++|.. T Consensus 127 ~~~~~l~gk~VLlVDDIlDTG~TL~~~~~~L~~~~pksV~~avLl~ 172 (225) T 2jbh_A 127 DDLSTLAGKNVLIVEDVVGTGRTMKALLSNIEKYKPNMIKVASLLV 172 (225) T ss_dssp SCGGGGTTSEEEEEEEEESSSHHHHHHHHHHHTTCCSEEEEEEEEE T ss_pred CCHHHHHCCCEEEEECEECHHHHHHHHHHHHHCCCCCEEEEEEEEE T ss_conf 8745541050599712112316999999999646999899999998 No 14 >3o7m_A Hypoxanthine phosphoribosyltransferase; hypoxanthine-guanine phosphoribosyltransferase, salvage of nucleosides and nucleotides; HET: GOL; 1.98A {Bacillus anthracis} Probab=98.95 E-value=1.3e-09 Score=72.18 Aligned_cols=50 Identities=10% Similarity=0.214 Sum_probs=43.7 Q ss_pred EECCHHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEEEE Q ss_conf 82510210028975999920045738899999999978997899999983 Q gi|254780309|r 6 NVPQYVSKHVAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILTFSR 55 (59) Q Consensus 6 ~i~~~~~~~i~gk~vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~~lar 55 (59) .+..+...+++||+|||||||++||.|+.++.+.|++.|++++.+++|.- T Consensus 83 ~~~~~~~~~i~gk~VLlVDDVlDTG~TL~~~~~~l~~~~~~~v~~avL~~ 132 (186) T 3o7m_A 83 KLLKDIDVNITGKNVIVVEDIIDSGLTLHFLKDHFFMHKPKALKFCTLLD 132 (186) T ss_dssp EEEECCCSCCTTSEEEEEEEEESSCHHHHHHHHHHHTTCCSEEEEEEEEE T ss_pred EECCCCCCCCCCCEEEEEEEEECCCHHHHHHHHHHHHCCCCEEEEEEEEE T ss_conf 16258875758988999942551147899999998744999189999999 No 15 >1u9y_A RPPK;, ribose-phosphate pyrophosphokinase; PRPP synthase, transferase; 2.65A {Methanocaldococcus jannaschii} SCOP: c.61.1.2 c.61.1.2 PDB: 1u9z_A* Probab=98.95 E-value=1.1e-09 Score=72.65 Aligned_cols=47 Identities=23% Similarity=0.331 Sum_probs=42.6 Q ss_pred HHCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEEEEECC Q ss_conf 10028975999920045738899999999978997899999983068 Q gi|254780309|r 12 SKHVAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILTFSRSLK 58 (59) Q Consensus 12 ~~~i~gk~vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~~lar~~~ 58 (59) ..+++||+|+||||+++||.|+.++++.|++.||++|+.++.+...+ T Consensus 200 ~gdv~g~~viIvDDii~tGgTl~~aa~~Lk~~GA~~V~~~~THgifs 246 (284) T 1u9y_A 200 TLDAKDRDVFIVDDIISTGGTMATAVKLLKEQGAKKIIAACVHPVLI 246 (284) T ss_dssp SCCCTTCCEEEEEEECSSSHHHHHHHHHHHHTTCCSEEEEEEECCCC T ss_pred CCCCCCCEEEEECCHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCC T ss_conf 34556653799745454267799999999866998699999797388 No 16 >1z7g_A HGPRT, HGPRTASE, hypoxanthine-guanine phosphoribosyltransferase; flexibility, trans CIS peptide bond isomerization, nucleotide binding; 1.90A {Homo sapiens} SCOP: c.61.1.1 PDB: 1hmp_A* 1bzy_A 3gep_A* 3ggc_A* 3ggj_A* 1d6n_A* 2vfa_A* Probab=98.94 E-value=1.3e-09 Score=72.21 Aligned_cols=46 Identities=15% Similarity=0.262 Sum_probs=41.7 Q ss_pred HHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEEEE Q ss_conf 0210028975999920045738899999999978997899999983 Q gi|254780309|r 10 YVSKHVAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILTFSR 55 (59) Q Consensus 10 ~~~~~i~gk~vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~~lar 55 (59) ....+++||+|||||||++||.|+.++.+.|++.|++++..++|.. T Consensus 119 ~~~~~l~gk~VLiVDDIlDTG~TL~~~~~~l~~~~p~sv~~~~Ll~ 164 (217) T 1z7g_A 119 DDLSTLTGKNVLIVEDIIDTGKTMQTLLSLVRQYNPKMVKVASLLV 164 (217) T ss_dssp SCGGGGTTSEEEEEEEECCCHHHHHHHHHHHHTTCCSEEEEEEEEE T ss_pred CCHHHHHHCEEEEEECCCCHHHHHHHHHHHHHCCCCCEEEEEEEEE T ss_conf 8704165366899604200628999999998476989699999998 No 17 >2geb_A Hypoxanthine-guanine phosphoribosyltransferase; HGPRT, mutant, inhibitor design, selectivity; 1.70A {Thermoanaerobacter tengcongensis} Probab=98.93 E-value=1.6e-09 Score=71.65 Aligned_cols=50 Identities=16% Similarity=0.240 Sum_probs=44.1 Q ss_pred EECCHHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEEEE Q ss_conf 82510210028975999920045738899999999978997899999983 Q gi|254780309|r 6 NVPQYVSKHVAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILTFSR 55 (59) Q Consensus 6 ~i~~~~~~~i~gk~vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~~lar 55 (59) .+..+...+++||+|||||||++||.|+.++.+.|.+.|++++.+++|.. T Consensus 87 ~~~~~~~~~i~gk~VLlVDDVldTG~TL~~~~~~l~~~~~~si~~~vL~~ 136 (185) T 2geb_A 87 KIIKDHDIDIEGKDVLIVEDIIDSGLTLAYLRETLLGRKPRSLKICTILD 136 (185) T ss_dssp EEEECCCSCCTTSEEEEEEEEESSCHHHHHHHHHHHTTCCSEEEEEEEEE T ss_pred EEECCCCCCCCCCEEEEEEEEECHHHHHHHHHHHHHHCCCCEEEEEEEEE T ss_conf 88156752789998999950544379999999999863998589978998 No 18 >3ohp_A Hypoxanthine phosphoribosyltransferase; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; 2.04A {Vibrio cholerae} PDB: 1g9s_A* 1g9t_A* 1grv_A 1j7j_A Probab=98.92 E-value=1.3e-09 Score=72.25 Aligned_cols=49 Identities=20% Similarity=0.319 Sum_probs=43.3 Q ss_pred ECCHHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEEEE Q ss_conf 2510210028975999920045738899999999978997899999983 Q gi|254780309|r 7 VPQYVSKHVAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILTFSR 55 (59) Q Consensus 7 i~~~~~~~i~gk~vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~~lar 55 (59) +..+...+++||+|||||||++||.|+.++.+.|++.||++|.+++|.- T Consensus 81 ~~~~~~~~~~gk~VLiVDDI~dTG~Tl~~~~~~l~~~~p~~v~~avL~d 129 (177) T 3ohp_A 81 ILKDLDDDIKGKDVLLVEDIIDTGNTLNKVKEILALREPKSIRICTLLD 129 (177) T ss_dssp EEECCSSCCTTSEEEEEEEEESSCHHHHHHHHHHHTTCCSEEEEEEEEE T ss_pred EECCCCCCCCCCEEEEEEEEECHHHHHHHHHHHHHHCCCCEEEEEEEEE T ss_conf 8448875668997999940774579999999999858998899999998 No 19 >2ywu_A Hypoxanthine-guanine phosphoribosyltransferase; rossmann fold, structural genomics, NPPSFA; HET: IMP; 1.89A {Thermus thermophilus} PDB: 2ywt_A* 2yws_A* 3acb_A 3acc_A* 3acd_A* Probab=98.90 E-value=1.7e-09 Score=71.57 Aligned_cols=49 Identities=14% Similarity=0.233 Sum_probs=43.7 Q ss_pred ECCHHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEEEE Q ss_conf 2510210028975999920045738899999999978997899999983 Q gi|254780309|r 7 VPQYVSKHVAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILTFSR 55 (59) Q Consensus 7 i~~~~~~~i~gk~vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~~lar 55 (59) +..+...+++||+|||||||++||.|+.++.+.|++.+|++|.+++|.- T Consensus 85 ~~~~~~~~~~gk~VliVDDVlDTG~TL~~~~~~l~~~~p~~i~~avL~d 133 (181) T 2ywu_A 85 LLKDLRLPIHGRDVIVVEDIVDTGLTLSYLLDYLEARKPASVRVAALLS 133 (181) T ss_dssp EEECCCSCCTTCEEEEEEEEESSSHHHHHHHHHHHTTCCSEEEEEEEEE T ss_pred ECCCCCCCCCCCEEEEEEEEECCCCHHHHHHHHHHHCCCCEEEEEEEEE T ss_conf 6157986878980799988872755299999999836998899999997 No 20 >1hgx_A HGXPRTASE, hypoxanthine-guanine-xanthine phosphoribosyltransferase; glycosyltransferase, purine salvage, transferase (glycosyltransferase); HET: 5GP; 1.90A {Tritrichomonas foetus} SCOP: c.61.1.1 Probab=98.89 E-value=2.1e-09 Score=71.08 Aligned_cols=50 Identities=16% Similarity=0.313 Sum_probs=44.2 Q ss_pred EECCHHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEEEE Q ss_conf 82510210028975999920045738899999999978997899999983 Q gi|254780309|r 6 NVPQYVSKHVAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILTFSR 55 (59) Q Consensus 6 ~i~~~~~~~i~gk~vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~~lar 55 (59) .+..+....++||+|||||||++||.|+.++.+.|++.||++|.++||.- T Consensus 84 ~~~~~~~~~~~gk~VLlVDDI~dtG~Tl~~~~~~l~~~~p~si~~avL~d 133 (183) T 1hgx_A 84 TISKDLKTNIEGRHVLVVEDIIDTGLTMYQLLNNLQMRKPASLKVCTLCD 133 (183) T ss_dssp EEEECCSSCCTTSEEEEEEEEESSSHHHHHHHHHHHTTCCSEEEEEEEEE T ss_pred EEECCCCCHHCCCCCEEEEEEECCCHHHHHHHHHHHCCCCCEEEEEEEEE T ss_conf 03126640003533213542365655699999999738997899999997 No 21 >1a3c_A PYRR, pyrimidine operon regulatory protein PYRR; transcription regulation, attenuation protein, RNA-binding protein, pyrimidine biosynthesis; 1.60A {Bacillus subtilis} SCOP: c.61.1.1 PDB: 1a4x_A 2igb_A* 1xz8_A* 1non_A 1xzn_A* Probab=98.88 E-value=2.6e-09 Score=70.53 Aligned_cols=46 Identities=22% Similarity=0.359 Sum_probs=40.4 Q ss_pred HHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHC-CCCEEEEEEEEE Q ss_conf 0210028975999920045738899999999978-997899999983 Q gi|254780309|r 10 YVSKHVAGLKILLIDDVYTTGATAKCAAIALKKA-GAMTVSILTFSR 55 (59) Q Consensus 10 ~~~~~i~gk~vliVDDiitTG~T~~~~~~~L~~~-ga~~V~~~~lar 55 (59) +...+++||+|||||||++||.||.++.+.|++. +|+++.+++|.. T Consensus 91 d~~~~l~gk~VliVDDIlDTG~TL~~~~~~l~~~~~~~~v~~avL~d 137 (181) T 1a3c_A 91 DIPVDITDQKVILVDDVLYTGRTVRAGMDALVDVGRPSSIQLAVLVD 137 (181) T ss_dssp ECSSCCTTSEEEEEEEEESSSHHHHHHHHHHHHHCCCSEEEEEEEEE T ss_pred CCCCCCCCCEEEEEECHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEC T ss_conf 57621259789999400112189999999997438986899999982 No 22 >1vch_A Phosphoribosyltransferase-related protein; structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.94A {Thermus thermophilus} SCOP: c.61.1.1 Probab=98.87 E-value=4.3e-09 Score=69.41 Aligned_cols=45 Identities=22% Similarity=0.403 Sum_probs=39.9 Q ss_pred HHCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEEEEE Q ss_conf 100289759999200457388999999999789978999999830 Q gi|254780309|r 12 SKHVAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILTFSRS 56 (59) Q Consensus 12 ~~~i~gk~vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~~lar~ 56 (59) ...++|++|+||||++|||+|+.++++.|+++|++.+.++++... T Consensus 115 ~~~~~G~rVllVDDvitTG~Tl~a~~~~l~~aGa~vv~v~~i~~~ 159 (175) T 1vch_A 115 AEKLLNQRVVLVSDVVASGETMRAMEKMVLRAGGHVVARLAVFRQ 159 (175) T ss_dssp HHHHTTCEEEEEEEEESSSHHHHHHHHHHHHTTCEEEEEEEEEEC T ss_pred HHHCCCCEEEEEEEEECCCHHHHHHHHHHHHCCCEEEEEEEEEEE T ss_conf 011289889999844166888999999999869979999999960 No 23 >1ufr_A TT1027, PYR mRNA-binding attenuation protein; pyrimidine nucleotide biosynthesis, transcriptional attenuation, RNA-binding protein; 2.60A {Thermus thermophilus} SCOP: c.61.1.1 Probab=98.84 E-value=4.7e-09 Score=69.20 Aligned_cols=50 Identities=28% Similarity=0.351 Sum_probs=41.7 Q ss_pred ECCHHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHCC-CCEEEEEEEEEE Q ss_conf 25102100289759999200457388999999999789-978999999830 Q gi|254780309|r 7 VPQYVSKHVAGLKILLIDDVYTTGATAKCAAIALKKAG-AMTVSILTFSRS 56 (59) Q Consensus 7 i~~~~~~~i~gk~vliVDDiitTG~T~~~~~~~L~~~g-a~~V~~~~lar~ 56 (59) +......+++||+|||||||++||.||.++.+.|.+.| ++.+.+++|... T Consensus 86 ~~~~~~~~l~gk~VLIVDDIlDTG~TL~~~~~~l~~~g~~~~v~~avL~kk 136 (181) T 1ufr_A 86 RETRIPFDLTGKAIVLVDDVLYTGRTARAALDALIDLGRPRRIYLAVLVDR 136 (181) T ss_dssp EEEEECSCCTTCEEEEEEEEESSSHHHHHHHHHHHHHCCCSEEEEEEEEEC T ss_pred ECCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEEEEECC T ss_conf 135677665685699984202656069999999987399956999999738 No 24 >1dqn_A Guanine phosphoribosyltransferase; protein-inhibitor complex, Mg IONS, pyrophosphate, transition state analogue; HET: IMU; 1.75A {Giardia intestinalis} SCOP: c.61.1.1 PDB: 1dqp_A* Probab=98.70 E-value=1.2e-09 Score=72.32 Aligned_cols=51 Identities=14% Similarity=0.115 Sum_probs=42.6 Q ss_pred CEEEECCHHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEE Q ss_conf 608825102100289759999200457388999999999789978999999 Q gi|254780309|r 3 NAFNVPQYVSKHVAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILTF 53 (59) Q Consensus 3 gaf~i~~~~~~~i~gk~vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~~l 53 (59) |...+..+...+++||+|||||||++||.|+.++.+.|++.|++++.++++ T Consensus 104 g~v~i~~~l~~~i~gk~VLIVDDIiDTG~TL~~l~~~L~~~~~~Sv~v~~l 154 (230) T 1dqn_A 104 SVVFDEEDLKQLKEKREVVLIDEYVDSGHTIFSIQEQIKHAKICSCFVKDV 154 (230) T ss_dssp EEECCHHHHHHHHHCSSEEEEEEEESSSHHHHHHHHHSTTCEEEEEEESCH T ss_pred CEEEEECCCCCCCCCCEEEEEEEEECCCHHHHHHHHHHHCCCCCEEEEEEE T ss_conf 422562276412389748997436717446999998775089868999540 No 25 >1w30_A PYRR bifunctional protein; transferase, glycosyltransferase, PSI, protein structure initiative, TB structural genomics consortium, TB; 1.9A {Mycobacterium tuberculosis} SCOP: c.61.1.1 Probab=98.69 E-value=2.4e-08 Score=65.33 Aligned_cols=45 Identities=20% Similarity=0.326 Sum_probs=39.0 Q ss_pred HHHCCCCCEEEEEEECCCCCHHHHHHHHHHHH-CCCCEEEEEEEEE Q ss_conf 21002897599992004573889999999997-8997899999983 Q gi|254780309|r 11 VSKHVAGLKILLIDDVYTTGATAKCAAIALKK-AGAMTVSILTFSR 55 (59) Q Consensus 11 ~~~~i~gk~vliVDDiitTG~T~~~~~~~L~~-~ga~~V~~~~lar 55 (59) ...+++||+|||||||++||.|+.++.+.+.+ .+|++|.+++|.. T Consensus 106 ~~~~l~gk~VLlVDDIlDTG~TL~~~~~~ll~~~~p~~V~~avLvd 151 (201) T 1w30_A 106 PAGGIDDALVILVDDVLYSGRSVRSALDALRDVGRPRAVQLAVLVD 151 (201) T ss_dssp CTTCSTTCEEEEEEEEESSSHHHHHHHHHHHHHCCCSEEEEEEEEE T ss_pred CCCCCCCCEEEEEEEEECCCHHHHHHHHHHHHCCCCCEEEEEEEEE T ss_conf 6746579789999402256768999999998528986899999992 No 26 >2jky_A Hypoxanthine-guanine phosphoribosyltransferase; nucleus, cytoplasm, magnesium, GMP complex, FLIP peptide-plane, glycosyltransferase; HET: 5GP; 2.3A {Saccharomyces cerevisiae} PDB: 2jkz_A* Probab=98.59 E-value=1.4e-09 Score=71.98 Aligned_cols=39 Identities=26% Similarity=0.332 Sum_probs=34.0 Q ss_pred HHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEE Q ss_conf 210028975999920045738899999999978997899 Q gi|254780309|r 11 VSKHVAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVS 49 (59) Q Consensus 11 ~~~~i~gk~vliVDDiitTG~T~~~~~~~L~~~ga~~V~ 49 (59) ...+++||+||||||+++||.||.++.+.|++.|+++|. T Consensus 96 ~~~~l~gk~VLIVDDi~dTG~Tl~~~~~~L~~~g~~~v~ 134 (213) T 2jky_A 96 CKLDLVGKNVLIVDEVDDTRTTLHYALSELEKDAAEQAK 134 (213) T ss_dssp CCCCCTTCEEEEEEEEESSSHHHHHHHHHHHHHHHHHHH T ss_pred CCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCHHEE T ss_conf 654668987999954203028999999999853945415 No 27 >1g2q_A Adenine phosphoribosyltransferase 1; dimer, single domain, catalytic loop; 1.50A {Saccharomyces cerevisiae} SCOP: c.61.1.1 PDB: 1g2p_A Probab=98.55 E-value=9.6e-08 Score=62.10 Aligned_cols=40 Identities=23% Similarity=0.326 Sum_probs=37.7 Q ss_pred CCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEEE Q ss_conf 2897599992004573889999999997899789999998 Q gi|254780309|r 15 VAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILTFS 54 (59) Q Consensus 15 i~gk~vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~~la 54 (59) .+|++|+||||+++||.|+.++.+.++++|++.+.++++. T Consensus 120 ~~G~rVlIVDDvi~TGgT~~a~~~ll~~~Ga~Vv~~~vli 159 (187) T 1g2q_A 120 PAGSNVIIVDDIIATGGSAAAAGELVEQLEANLLEYNFVM 159 (187) T ss_dssp CTTCEEEEEEEEESSCHHHHHHHHHHHHTTCEEEEEEEEE T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEEEEE T ss_conf 6786799983004037699999999998799899999999 No 28 >1ecf_A Glutamine phosphoribosylpyrophosphate amidotransferase; purine biosynthesis, glycosyltransferase, glutamine amidotransferase; HET: PIN; 2.00A {Escherichia coli} SCOP: c.61.1.1 d.153.1.1 PDB: 1ecb_A* 1ecc_A* 1ecg_A* 1ecj_A* Probab=98.53 E-value=7.2e-08 Score=62.77 Aligned_cols=48 Identities=21% Similarity=0.302 Sum_probs=42.6 Q ss_pred HHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEEEEECC Q ss_conf 210028975999920045738899999999978997899999983068 Q gi|254780309|r 11 VSKHVAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILTFSRSLK 58 (59) Q Consensus 11 ~~~~i~gk~vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~~lar~~~ 58 (59) .+..++||+|+||||.|.+|+|+..+++.|+++||++|++..-+..++ T Consensus 353 ~~~~i~gk~ivlvDDSIVRGtT~k~ii~~Lr~aGakeIhvri~sPpi~ 400 (504) T 1ecf_A 353 NRAEFRDKNVLLVDDSIVRGTTSEQIIEMAREAGAKKVYLASAAPEIR 400 (504) T ss_dssp CGGGTTTCCEEEEESCCSSSHHHHHHHHHHHHTTCSSEEEEESSCCCC T ss_pred CHHHEECCCEEEEECCHHCCCHHHHHHHHHHHCCCCEEEEEECCCCCC T ss_conf 342131362799753010264199999999976998899997789857 No 29 >1qb7_A APRT, adenine phosphoribosyltransferase; dinucleotide binding fold; HET: ADE CIT; 1.50A {Leishmania donovani} SCOP: c.61.1.1 PDB: 1qb8_A* 1qcc_A* 1qcd_A 1mzv_A* Probab=98.47 E-value=2.1e-07 Score=60.28 Aligned_cols=40 Identities=30% Similarity=0.456 Sum_probs=37.4 Q ss_pred CCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEEE Q ss_conf 2897599992004573889999999997899789999998 Q gi|254780309|r 15 VAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILTFS 54 (59) Q Consensus 15 i~gk~vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~~la 54 (59) .+|++|+||||+++||.|+.++.+.+++.|+..+.++++. T Consensus 136 ~~g~rVlIVDDviaTGgT~~a~~~ll~~~Ga~vvg~~~ii 175 (236) T 1qb7_A 136 GKGSRVVLIDDVLATGGTALSGLQLVEASDAVVVEMVSIL 175 (236) T ss_dssp CTTCEEEEEEEEESSCHHHHHHHHHHHHTTCEEEEEEEEE T ss_pred CCCCEEEEEEEEECCCHHHHHHHHHHHHCCCEEEEEEEEE T ss_conf 5696799996016356699999999998799899999999 No 30 >1ao0_A Glutamine phosphoribosylpyrophosphate amidotransferase; glutamine amidotransferase, prtase, purine biosynthesis, phosphoribosyltransferase; HET: 5GP ADP; 2.80A {Bacillus subtilis} SCOP: c.61.1.1 d.153.1.1 PDB: 1gph_1* Probab=98.46 E-value=1.5e-07 Score=61.01 Aligned_cols=47 Identities=28% Similarity=0.442 Sum_probs=42.1 Q ss_pred HHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEEEEEC Q ss_conf 21002897599992004573889999999997899789999998306 Q gi|254780309|r 11 VSKHVAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILTFSRSL 57 (59) Q Consensus 11 ~~~~i~gk~vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~~lar~~ 57 (59) .+..++||.|+||||.+-+|+|+..+++.|+++||++|++..-+..+ T Consensus 332 ~~~~i~gk~vvlvDDSIVRGtT~k~iv~~lr~~Gakevh~~~~sPpi 378 (459) T 1ao0_A 332 VRGVVEGKRVVMVDDSIVRGTTSRRIVTMLREAGATEVHVKISSPPI 378 (459) T ss_dssp CHHHHTTCEEEEEESCCSSSHHHHHHHHHHHHTTCSEEEEEESSCCC T ss_pred HHHHHCCCCEEEEECCEECCCHHHHHHHHHHHCCCCEEEEEECCCCC T ss_conf 48774467069995321013028999999974799889999788973 No 31 >2p1z_A Phosphoribosyltransferase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; 2.44A {Corynebacterium diphtheriae NCTC13129} Probab=98.45 E-value=2.1e-07 Score=60.28 Aligned_cols=40 Identities=40% Similarity=0.556 Sum_probs=37.8 Q ss_pred CCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEEE Q ss_conf 2897599992004573889999999997899789999998 Q gi|254780309|r 15 VAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILTFS 54 (59) Q Consensus 15 i~gk~vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~~la 54 (59) .+|++|+||||++|||.|+.++++.+++.|+..+.++++. T Consensus 112 ~~g~rVlIVDDviTTG~S~~~~i~~l~~~G~~V~~v~viv 151 (180) T 2p1z_A 112 VVGKKVLVVEDTTTTGNSPLTAVKALREAGAEVVGVATVV 151 (180) T ss_dssp CTTCEEEEEEEECSSSHHHHHHHHHHHHHTCEEEEEEEEE T ss_pred CCCCEEEEEEEEECCCHHHHHHHHHHHHCCCEEEEEEEEE T ss_conf 5897689997523037519999999998899799999999 No 32 >1y0b_A Xanthine phosphoribosyltransferase; purine metabolism, structural genomics, PSI, protein structure initative; HET: G4P; 1.80A {Bacillus subtilis} SCOP: c.61.1.1 PDB: 2fxv_A* Probab=98.45 E-value=4e-07 Score=58.73 Aligned_cols=41 Identities=27% Similarity=0.304 Sum_probs=38.0 Q ss_pred CCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEEEE Q ss_conf 28975999920045738899999999978997899999983 Q gi|254780309|r 15 VAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILTFSR 55 (59) Q Consensus 15 i~gk~vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~~lar 55 (59) -+|++|+||||+++||.|+.++.+.++++|++-+.++++.- T Consensus 118 ~~g~rVlIVDDvitTG~T~~~~i~ll~~~Ga~vvgv~vlvd 158 (197) T 1y0b_A 118 SDQDHVLIIDDFLANGQAAHGLVSIVKQAGASIAGIGIVIE 158 (197) T ss_dssp CTTCEEEEEEEEESSCHHHHHHHHHHHHTTCEEEEEEEEEE T ss_pred CCCCEEEEEEHHHHCCHHHHHHHHHHHHCCCEEEEEEEEEE T ss_conf 69979999720213283699999999987998999999998 No 33 >2wns_A Orotate phosphoribosyltransferase; alternative splicing, multifunctional enzyme, lyase, polymorphism, decarboxylase, phosphoprotein; HET: OMP; 1.90A {Homo sapiens} Probab=98.42 E-value=2.2e-07 Score=60.20 Aligned_cols=40 Identities=25% Similarity=0.358 Sum_probs=37.1 Q ss_pred CCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEEE Q ss_conf 2897599992004573889999999997899789999998 Q gi|254780309|r 15 VAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILTFS 54 (59) Q Consensus 15 i~gk~vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~~la 54 (59) .+|++|+||||++|||.|+.++++.+++.|+..+.++++- T Consensus 109 ~~g~~VlIVDDvitTG~T~~~ai~~l~~~G~~v~~v~viv 148 (205) T 2wns_A 109 NPGETCLIIEDVVTSGSSVLETVEVLQKEGLKVTDAIVLL 148 (205) T ss_dssp CTTCBEEEEEEEESSSHHHHHHHHHHHHTTCBCCEEEEEE T ss_pred CCCCEEEEEEEEHHCCCCHHHHHHHHHHCCCEEEEEEEEE T ss_conf 6664599996102127067989999986898899999999 No 34 >1o57_A PUR operon repressor; purine operon repressor, helix-turn-helix domain, phosphoribosyltranseferases, domain recombination, DNA binding; HET: EPE P6G 2PE PG4 1PE; 2.20A {Bacillus subtilis} SCOP: a.4.5.40 c.61.1.1 PDB: 1p4a_A* Probab=98.42 E-value=3.6e-07 Score=58.99 Aligned_cols=42 Identities=24% Similarity=0.275 Sum_probs=38.1 Q ss_pred CCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEEEE Q ss_conf 028975999920045738899999999978997899999983 Q gi|254780309|r 14 HVAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILTFSR 55 (59) Q Consensus 14 ~i~gk~vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~~lar 55 (59) -.+|++||||||+++||.|+.++++.++++||+.+.+.++.- T Consensus 193 l~~g~rVLIVDDvi~tG~T~~~~i~llre~GA~vvgi~VlVd 234 (291) T 1o57_A 193 MKTGSNVLIIDDFMKAGGTINGMINLLDEFNANVAGIGVLVE 234 (291) T ss_dssp SCTTCEEEEEEEEESSSHHHHHHHHHTGGGTCEEEEEEEEEE T ss_pred CCCCCEEEEEHHHHHCCHHHHHHHHHHHHCCCEEEEEEEEEE T ss_conf 578856998424233277899999999987997999999998 No 35 >2yzk_A OPRT, oprtase, orotate phosphoribosyltransferase; rossmann fold, glycosyltransferase, magnesium, pyrimidine biosynthesis, structural genomics; 1.80A {Aeropyrum pernix} Probab=98.40 E-value=4.1e-07 Score=58.67 Aligned_cols=42 Identities=21% Similarity=0.283 Sum_probs=38.1 Q ss_pred HCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEEE Q ss_conf 002897599992004573889999999997899789999998 Q gi|254780309|r 13 KHVAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILTFS 54 (59) Q Consensus 13 ~~i~gk~vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~~la 54 (59) ....|++|+||||++|||.|+.++++.+++.|+..+.++++. T Consensus 102 g~~~g~~VlIVDDvitTG~S~~~~i~~l~~~G~~v~~v~vlv 143 (178) T 2yzk_A 102 GDPPKGRVVVVDDVATTGTSIAKSIEVLRSNGYTVGTALVLV 143 (178) T ss_dssp TCCCSSEEEEEEEEESSSHHHHHHHHHHHHTTCEEEEEEEEE T ss_pred EECCCCEEEEEEEEECCCCCHHHHHHHHHHCCCEEEEEEEEE T ss_conf 524895799997447357468999999998899799999999 No 36 >2ps1_A Orotate phosphoribosyltransferase 1; alpha beta, oprtase-OA-PRPP complex; HET: ORO PRP; 1.75A {Saccharomyces cerevisiae} PDB: 2pry_A* 2prz_A* Probab=98.40 E-value=4.2e-07 Score=58.61 Aligned_cols=40 Identities=28% Similarity=0.326 Sum_probs=37.6 Q ss_pred CCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEEE Q ss_conf 2897599992004573889999999997899789999998 Q gi|254780309|r 15 VAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILTFS 54 (59) Q Consensus 15 i~gk~vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~~la 54 (59) .+|++|+||||++|||.|+.++++.|++.|+..+.++++. T Consensus 123 ~~G~~VlIVDDViTTG~S~~eai~~l~~~G~~V~~~~viv 162 (226) T 2ps1_A 123 LENKRILIIDDVMTAGTAINEAFEIISNAKGQVVGSIIAL 162 (226) T ss_dssp CTTCEEEEEEEEESSSHHHHHHHHHHHHTTCEEEEEEEEE T ss_pred CCCCEEEEEEEEECCCCCHHHHHHHHHHCCCEEEEEEEEE T ss_conf 7797079986103568458999999998799899999999 No 37 >1zn8_A APRT, adenine phosphoribosyltransferase; glycosyltransferase, polymorphism, purine salvage; HET: AMP; 1.76A {Homo sapiens} SCOP: c.61.1.1 PDB: 1ore_A* 1zn7_A* 1zn9_A* Probab=98.38 E-value=4.7e-07 Score=58.38 Aligned_cols=40 Identities=23% Similarity=0.405 Sum_probs=37.5 Q ss_pred CCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEEE Q ss_conf 2897599992004573889999999997899789999998 Q gi|254780309|r 15 VAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILTFS 54 (59) Q Consensus 15 i~gk~vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~~la 54 (59) -+|.+|+||||+++||.|+.++.+.+++.|+..+.++++. T Consensus 118 ~~g~rVlIVDDvlaTGgT~~a~~~ll~~~Ga~vvg~~~ii 157 (180) T 1zn8_A 118 EPGQRVVVVDDLLATGGTMNAACELLGRLQAEVLECVSLV 157 (180) T ss_dssp CTTCEEEEEEEEESSSHHHHHHHHHHHHTTCEEEEEEEEE T ss_pred CCCCEEEEEEHHHHHCCHHHHHHHHHHHCCCEEEEEEEEE T ss_conf 5898899995463408189999999998799899999999 No 38 >3m3h_A OPRT, oprtase, orotate phosphoribosyltransferase; pyrimidine ribonucleotide biosynthesis, structural genomics, infectious diseases; 1.75A {Bacillus anthracis} PDB: 3osc_A* Probab=98.37 E-value=5.3e-07 Score=58.08 Aligned_cols=40 Identities=28% Similarity=0.501 Sum_probs=37.0 Q ss_pred CCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEEE Q ss_conf 2897599992004573889999999997899789999998 Q gi|254780309|r 15 VAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILTFS 54 (59) Q Consensus 15 i~gk~vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~~la 54 (59) -+|++|+||||++|||.|+.++++.++++|+..+.++++. T Consensus 135 ~~G~~VlIVDDViTTG~Si~~ai~~lr~~G~~V~~v~viv 174 (234) T 3m3h_A 135 EKGQKVVVVEDLISTGGSAITCVEALREAGCEVLGIVSIF 174 (234) T ss_dssp CTTCEEEEEEEEESSSHHHHHHHHHHHHTTCEEEEEEEEE T ss_pred CCCCEEEEEEEEECCCCCHHHHHHHHHHCCCEEEEEEEEE T ss_conf 5795599985300347227999999997899799999999 No 39 >2dy0_A APRT, adenine phosphoribosyltransferase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.25A {Escherichia coli K12} Probab=98.36 E-value=5.7e-07 Score=57.92 Aligned_cols=39 Identities=23% Similarity=0.411 Sum_probs=36.9 Q ss_pred CCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEEE Q ss_conf 897599992004573889999999997899789999998 Q gi|254780309|r 16 AGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILTFS 54 (59) Q Consensus 16 ~gk~vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~~la 54 (59) +|.+||||||+++||.|+.++.+.++++|++.+.++++. T Consensus 125 ~G~rVlIVDDvlaTGgT~~a~~~ll~~~Ga~Vvg~~vii 163 (190) T 2dy0_A 125 PGDKVLVVDDLLATGGTIEATVKLIRRLGGEVADAAFII 163 (190) T ss_dssp TTCEEEEEEEEESSCHHHHHHHHHHHHTTCEEEEEEEEE T ss_pred CCCEEEEEHHHHHCCHHHHHHHHHHHHCCCEEEEEEEEE T ss_conf 998799982441317489999999998699899999999 No 40 >3mjd_A Orotate phosphoribosyltransferase; IDP02311, csgid, structural genomics, center for structural genomics of infectious diseases; 1.90A {Francisella tularensis} Probab=98.36 E-value=5.2e-07 Score=58.13 Aligned_cols=40 Identities=30% Similarity=0.295 Sum_probs=37.6 Q ss_pred CCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEEE Q ss_conf 2897599992004573889999999997899789999998 Q gi|254780309|r 15 VAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILTFS 54 (59) Q Consensus 15 i~gk~vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~~la 54 (59) .+|++|+||||++|||.|+.++++.|++.|+..+.++++. T Consensus 134 ~~g~~VlIVDDViTTG~S~~~ai~~l~~~G~~V~~v~viv 173 (232) T 3mjd_A 134 MTNKKVLLIDDVMTAGTAFYESYNKLKIINAKIAGVVLSI 173 (232) T ss_dssp CTTCEEEEECSCCSSSHHHHHHHHHHHTTTCEEEEEEEEE T ss_pred CCCCCEEEEEEEECCCCCHHHHHHHHHHCCCEEEEEEEEE T ss_conf 6655158983103568578999999998699799999999 No 41 >1l1q_A Adenine phosphoribosyltransferase; aprtase, giardia lamblia, purine metabolism, catalytic loop; HET: 9DA; 1.85A {Giardia intestinalis} SCOP: c.61.1.1 PDB: 1l1r_A* Probab=98.30 E-value=7.1e-07 Score=57.42 Aligned_cols=39 Identities=31% Similarity=0.267 Sum_probs=34.0 Q ss_pred CCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCE--EEEEEE Q ss_conf 289759999200457388999999999789978--999999 Q gi|254780309|r 15 VAGLKILLIDDVYTTGATAKCAAIALKKAGAMT--VSILTF 53 (59) Q Consensus 15 i~gk~vliVDDiitTG~T~~~~~~~L~~~ga~~--V~~~~l 53 (59) -+|++||||||+++||.|+.++.+.+++.|++. |.++++ T Consensus 115 ~~G~rVLIVDDvl~TGgT~~a~~~ll~~~Ga~v~~v~v~vv 155 (186) T 1l1q_A 115 GPHDVVLLHDDVLATGGTLLAAIELCETAGVKPENIYINVL 155 (186) T ss_dssp CTTCCEEEEEEEESSSHHHHHHHHHHHHTTCCGGGEEEEEE T ss_pred CCCCEEEEEEEHHHHCHHHHHHHHHHHHCCCCEEEEEEEEE T ss_conf 78998999953433164899999999987994789999999 No 42 >3dez_A OPRT, oprtase, orotate phosphoribosyltransferase; glycosyltransferase, MAGN pyrimidine biosynthesis; 2.40A {Streptococcus mutans} Probab=98.30 E-value=9.5e-07 Score=56.72 Aligned_cols=40 Identities=25% Similarity=0.449 Sum_probs=36.8 Q ss_pred CCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEEE Q ss_conf 2897599992004573889999999997899789999998 Q gi|254780309|r 15 VAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILTFS 54 (59) Q Consensus 15 i~gk~vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~~la 54 (59) -+|++|+||||++|||.++.++++.|++.|+..+.++++- T Consensus 147 ~~g~rVlIVEDViTTGgSileai~~l~~~G~~V~~v~viv 186 (243) T 3dez_A 147 TKGQKMVIIEDLISTGGSVLDAVAAAQREGADVLGVVAIF 186 (243) T ss_dssp CTTCEEEEEEEEESSSHHHHHHHHHHHHTTCEEEEEEEEE T ss_pred CCCCEEEEEEEEECCCCCHHHHHHHHHHCCCEEEEEEEEE T ss_conf 9999899985114567445899999998799799999999 No 43 >2aee_A OPRT, oprtase, orotate phosphoribosyltransferase; structural genomics, PSI, protein structure initiative; 1.95A {Streptococcus pyogenes} SCOP: c.61.1.1 Probab=98.24 E-value=1.6e-06 Score=55.48 Aligned_cols=40 Identities=28% Similarity=0.472 Sum_probs=37.2 Q ss_pred CCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEEE Q ss_conf 2897599992004573889999999997899789999998 Q gi|254780309|r 15 VAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILTFS 54 (59) Q Consensus 15 i~gk~vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~~la 54 (59) .+|++|+||||++|||.|+.++++.+++.|+..+.++++. T Consensus 115 ~~g~~VliVEDViTTG~S~~~ai~~l~~~g~~V~~~~viv 154 (211) T 2aee_A 115 LKGQKMVIIEDLISTGGSVLDAAAAASREGADVLGVVAIF 154 (211) T ss_dssp CTTCEEEEEEEEESSCHHHHHHHHHHHHTTCEEEEEEEEE T ss_pred CCCCEEEEEEEEECCCCCHHHHHHHHHHCCCEEEEEEEEE T ss_conf 7999899985304567215765446887498066999999 No 44 >3n2l_A OPRT, oprtase, orotate phosphoribosyltransferase; pyrimidine ribonucleotide biosynthesis, infectious diseases; 2.10A {Vibrio cholerae} Probab=98.20 E-value=2.3e-06 Score=54.63 Aligned_cols=39 Identities=21% Similarity=0.273 Sum_probs=35.8 Q ss_pred CCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEEE Q ss_conf 897599992004573889999999997899789999998 Q gi|254780309|r 16 AGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILTFS 54 (59) Q Consensus 16 ~gk~vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~~la 54 (59) .+.+|+||||++|||.|+.++++.|++.|+..+.++|+. T Consensus 141 ~~grVlIVDDViTTG~Si~~ai~~l~~~G~~V~~v~viv 179 (238) T 3n2l_A 141 LEGRVMLVDDVITAGTAIRESMELIQANKADLAGVLVAI 179 (238) T ss_dssp CCSEEEEECSCCSSSHHHHHHHHHHHHTTCEEEEEEEEE T ss_pred CCCCEEEEEEEECCCCCHHHHHHHHHHCCCEEEEEEEEE T ss_conf 777679997651668458999999998799489999986 No 45 >1lh0_A OMP synthase; loop closure, monomer closure, orotate phosphoribosyltransferase; HET: ORO PRP; 2.00A {Salmonella typhimurium} SCOP: c.61.1.1 PDB: 1opr_A* 1sto_A* 1oro_A Probab=98.06 E-value=4.7e-06 Score=52.97 Aligned_cols=40 Identities=23% Similarity=0.334 Sum_probs=36.0 Q ss_pred CCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEEEE Q ss_conf 8975999920045738899999999978997899999983 Q gi|254780309|r 16 AGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILTFSR 55 (59) Q Consensus 16 ~gk~vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~~lar 55 (59) .+.+|+||||++|||.|..++++.|++.|+..+.++|+.- T Consensus 116 ~~~rVliVeDViTTG~S~~e~i~~l~~~G~~V~~v~vivD 155 (213) T 1lh0_A 116 LQGRVMLVDDVITAGTAIRESMEIIQAHGATLAGVLISLD 155 (213) T ss_dssp CCSEEEEECSCCSSSCHHHHHHHHHHHTTCEEEEEEEEEE T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHCCCEEEEEEEEEE T ss_conf 7784899972314256589999999987997999999987 No 46 >1nul_A XPRT, xanthine-guanine phosphoribosyltransferase; purine salvage enzyme; 1.80A {Escherichia coli} SCOP: c.61.1.1 PDB: 1a96_A* 1a95_A 1a98_A 1a97_A* Probab=98.02 E-value=1.4e-06 Score=55.80 Aligned_cols=37 Identities=27% Similarity=0.302 Sum_probs=30.0 Q ss_pred HCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEEE Q ss_conf 002897599992004573889999999997899789999998 Q gi|254780309|r 13 KHVAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILTFS 54 (59) Q Consensus 13 ~~i~gk~vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~~la 54 (59) ..+.||+|||||||++||.|+.++.+.|++ ++.++|. T Consensus 77 ~~~~gk~VLiVDDI~DtG~Tl~~i~~~l~~-----~~~a~l~ 113 (152) T 1nul_A 77 AEGDGEGFIVIDDLVDTGGTAVAIREMYPK-----AHFVTIF 113 (152) T ss_dssp CSSCCTTEEEEEEEECTTSSHHHHHHHCTT-----SEEEEEE T ss_pred CCCCCCCEEEEEECCCCHHHHHHHHHHCCC-----CEEEEEE T ss_conf 046897269995031541899999986677-----6699999 No 47 >2ehj_A Uracil phosphoribosyltransferase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.80A {Escherichia coli} Probab=97.94 E-value=2.2e-05 Score=49.33 Aligned_cols=49 Identities=22% Similarity=0.333 Sum_probs=43.1 Q ss_pred CCHHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEEEEE Q ss_conf 5102100289759999200457388999999999789978999999830 Q gi|254780309|r 8 PQYVSKHVAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILTFSRS 56 (59) Q Consensus 8 ~~~~~~~i~gk~vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~~lar~ 56 (59) ...+++++.+++|+|+|.++.||.|+..+.+.|+++|+++|.++++-.+ T Consensus 114 ~~klP~~~~~~~villDPmlATG~s~~~ai~~L~~~G~~~I~iv~~ias 162 (208) T 2ehj_A 114 FQKLVSNIDERMALIVDPMLATGGSVIATIDLLKKAGCSSIKVLVLVAA 162 (208) T ss_dssp EEECCSCGGGCEEEEEEEEESSCHHHHHHHHHHHHTTCCEEEEEEEEEC T ss_pred EEECCCCCCCCEEEEECHHHHCCHHHHHHHHHHHHCCCCCEEEEEEEEC T ss_conf 9861445666769996836745677999999998579982899999855 No 48 >1o5o_A Uracil phosphoribosyltransferase; TM0721, structural genomics, JCSG, PSI, protein structure initiative; HET: U5P; 2.30A {Thermotoga maritima} SCOP: c.61.1.1 Probab=97.89 E-value=1.3e-05 Score=50.50 Aligned_cols=49 Identities=18% Similarity=0.276 Sum_probs=42.6 Q ss_pred CCHHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEEEEE Q ss_conf 5102100289759999200457388999999999789978999999830 Q gi|254780309|r 8 PQYVSKHVAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILTFSRS 56 (59) Q Consensus 8 ~~~~~~~i~gk~vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~~lar~ 56 (59) ...+++++.+++|+|+|.++.||.|+..+.+.|++.|+++|.++++--+ T Consensus 127 y~klP~~~~~~~VillDPmlATG~s~~~ai~~L~~~G~~~I~~v~~ias 175 (221) T 1o5o_A 127 YAKLPPLNDDKEVFLLDPMLATGVSSIKAIEILKENGAKKITLVALIAA 175 (221) T ss_dssp EEECCCCCTTCEEEEECSEESSSHHHHHHHHHHHHTTCCEEEEECSEEC T ss_pred EEECCCCCCCCEEEEEHHHHHCCHHHHHHHHHHHHCCCCEEEEEEEEEC T ss_conf 0107866346728987788647712999999998659970899998855 No 49 >1i5e_A Uracil phosphoribosyltransferase; salvage pathway; HET: U5P; 3.00A {Bacillus caldolyticus} SCOP: c.61.1.1 Probab=97.78 E-value=2.6e-05 Score=48.92 Aligned_cols=49 Identities=24% Similarity=0.351 Sum_probs=42.7 Q ss_pred CCHHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEEEEE Q ss_conf 5102100289759999200457388999999999789978999999830 Q gi|254780309|r 8 PQYVSKHVAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILTFSRS 56 (59) Q Consensus 8 ~~~~~~~i~gk~vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~~lar~ 56 (59) ...++.++++++|+|.|.++.||.|+..+.+.|++.|+++|.++++--+ T Consensus 115 y~kLP~~i~~~~villDPmlATG~s~~~ai~~L~~~G~~~I~~vs~ias 163 (209) T 1i5e_A 115 YVKLPSDVEERDFIIVDPMLATGGSAVAAIDALKKRGAKSIKFMCLIAA 163 (209) T ss_dssp EEECCTTTTTSEEEEECSEESSSHHHHHHHHHHHHTTCCCEEEECSEEC T ss_pred EEECCCCCCCCEEEEECHHHHCCHHHHHHHHHHHHCCCCCEEEEEEECC T ss_conf 2435865103868975868864777999999999669985799998507 No 50 >1v9s_A Uracil phosphoribosyltransferase; pyrimidine salvage, oligomerization, structural genomics; 2.10A {Thermus thermophilus HB8} SCOP: c.61.1.1 Probab=97.78 E-value=1.8e-05 Score=49.82 Aligned_cols=48 Identities=25% Similarity=0.362 Sum_probs=42.5 Q ss_pred CHHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEEEEE Q ss_conf 102100289759999200457388999999999789978999999830 Q gi|254780309|r 9 QYVSKHVAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILTFSRS 56 (59) Q Consensus 9 ~~~~~~i~gk~vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~~lar~ 56 (59) ..+++++.+++|+|+|.++.||.|+..+.+.|++.|++++.++++-.+ T Consensus 115 ~klP~~i~~~~vil~DPmlATG~s~~~ai~~Lk~~g~~~I~~v~~ias 162 (208) T 1v9s_A 115 IKLPPDIAERRAFLLDPMLATGGSASLALSLLKERGATGVKLMAILAA 162 (208) T ss_dssp EECCSCGGGSCEEEECSEESSSHHHHHHHHHHHHTTCCSCEEEEEEEC T ss_pred EECCCCCCCCEEEEECHHHHCCHHHHHHHHHHHHCCCCCEEEEEEECC T ss_conf 973765135779996836634377999999998659984699999527 No 51 >1bd3_D Uprtase, uracil phosphoribosyltransferase; glycosyltransferase; 1.93A {Toxoplasma gondii} SCOP: c.61.1.1 PDB: 1bd4_D 1jlr_A* 1jls_B* 1upf_D 1upu_D* Probab=97.50 E-value=0.00011 Score=45.64 Aligned_cols=49 Identities=12% Similarity=0.180 Sum_probs=40.4 Q ss_pred ECCHHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCC--EEEEEEEEE Q ss_conf 2510210028975999920045738899999999978997--899999983 Q gi|254780309|r 7 VPQYVSKHVAGLKILLIDDVYTTGATAKCAAIALKKAGAM--TVSILTFSR 55 (59) Q Consensus 7 i~~~~~~~i~gk~vliVDDiitTG~T~~~~~~~L~~~ga~--~V~~~~lar 55 (59) ....+++++.++.|+|+|.++.||.|+..+.+.|++.|++ ++.++++-. T Consensus 146 yy~klP~~i~~~~Vll~DPMLATG~S~~~ai~~L~~~Gv~~~~I~~vsvia 196 (243) T 1bd3_D 146 IYEKLPADIRERWVMLLDPMCATAGSVCKAIEVLLRLGVKEERIIFVNILA 196 (243) T ss_dssp EEEECCTTGGGSEEEEECSEESSCHHHHHHHHHHHHHTCCGGGEEEEEEEE T ss_pred EHHHCCCCCCCCEEEEECCHHHCCHHHHHHHHHHHHCCCCCCEEEEEEEEE T ss_conf 142284211014589868055057229999999997199854079999986 No 52 >2e55_A Uracil phosphoribosyltransferase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.15A {Aquifex aeolicus} Probab=97.46 E-value=0.00017 Score=44.57 Aligned_cols=44 Identities=18% Similarity=0.286 Sum_probs=40.0 Q ss_pred HCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEEEEE Q ss_conf 00289759999200457388999999999789978999999830 Q gi|254780309|r 13 KHVAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILTFSRS 56 (59) Q Consensus 13 ~~i~gk~vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~~lar~ 56 (59) +++.++.|+|+|.++.||.|+..+.+.|++.|+++|.++++--+ T Consensus 117 P~~~~~~vlllDPmlATG~s~~~ai~~L~~~g~~~I~~v~~iaa 160 (208) T 2e55_A 117 PELKGKIVVILDPMLATGGTLEVALREILKHSPLKVKSVHAIAA 160 (208) T ss_dssp CCCBTSEEEEECSEESSSHHHHHHHHHHHTTCBSEEEEEEEEEC T ss_pred HHHCCCCEEEECHHHCCCCHHHHHHHHHHHCCCCEEEEEEEEEC T ss_conf 53035706983467615715999999998448861799999825 No 53 >3dmp_A Uracil phosphoribosyltransferase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.60A {Burkholderia pseudomallei} Probab=97.32 E-value=0.00013 Score=45.21 Aligned_cols=44 Identities=23% Similarity=0.262 Sum_probs=37.8 Q ss_pred HHCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCC--CEEEEEEEEE Q ss_conf 1002897599992004573889999999997899--7899999983 Q gi|254780309|r 12 SKHVAGLKILLIDDVYTTGATAKCAAIALKKAGA--MTVSILTFSR 55 (59) Q Consensus 12 ~~~i~gk~vliVDDiitTG~T~~~~~~~L~~~ga--~~V~~~~lar 55 (59) .+++++++|+|+|.++.||.|+..+.+.|+++|+ ++|.++++-- T Consensus 124 ~p~~~~~~villDPmlATG~s~~~ai~~L~~~Gv~~~~I~~v~~ia 169 (217) T 3dmp_A 124 LPDLEDRIFILCDPMVATGYSAAHAIDVLKRRGVPGERLMFLALVA 169 (217) T ss_dssp CCCCTTCEEEEECSEESSSHHHHHHHHHHHTTTCCGGGEEEECSEE T ss_pred CCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEEEEEE T ss_conf 8773446099994402577579999999998499845289999875 No 54 >1xtt_A Probable uracil phosphoribosyltransferase; tetramer, type 1 phosphoribosyltransferase, UMP complex; HET: U5P; 1.80A {Sulfolobus solfataricus} SCOP: c.61.1.1 PDB: 1vst_A* 1xtu_A* 1xtv_A* 3g6w_A* Probab=97.03 E-value=0.00057 Score=41.70 Aligned_cols=41 Identities=17% Similarity=0.150 Sum_probs=36.5 Q ss_pred CCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEEEEE Q ss_conf 89759999200457388999999999789978999999830 Q gi|254780309|r 16 AGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILTFSRS 56 (59) Q Consensus 16 ~gk~vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~~lar~ 56 (59) +.++|++.|.++.||.|+..+.+.|++.|+++|.++++--+ T Consensus 132 ~~~~villDPmlATG~s~~~ai~~L~~~g~~~I~~v~~ias 172 (216) T 1xtt_A 132 KVDNVIIADPMIATASTMLKVLEEVVKANPKRIYIVSIISS 172 (216) T ss_dssp TTCEEEEECSEESSSHHHHHHHHHHGGGCCSEEEEECSEEE T ss_pred CCCEEEEECHHHHCHHHHHHHHHHHHHCCCCEEEEEEEEEC T ss_conf 45338972747754188999999987459953899999946 No 55 >1dcf_A ETR1 protein; beta-alpha five sandwich, transferase; 2.50A {Arabidopsis thaliana} SCOP: c.23.1.2 Probab=78.13 E-value=2.9 Score=21.69 Aligned_cols=32 Identities=25% Similarity=0.417 Sum_probs=24.0 Q ss_pred HCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCE Q ss_conf 00289759999200457388999999999789978 Q gi|254780309|r 13 KHVAGLKILLIDDVYTTGATAKCAAIALKKAGAMT 47 (59) Q Consensus 13 ~~i~gk~vliVDDiitTG~T~~~~~~~L~~~ga~~ 47 (59) ++++|++||+|||- -.......+.|+..|... T Consensus 3 ~~~~g~rILvVDD~---~~~~~~l~~~L~~~g~~v 34 (136) T 1dcf_A 3 SNFTGLKVLVMDEN---GVSRMVTKGLLVHLGCEV 34 (136) T ss_dssp CCCTTCEEEEECSC---HHHHHHHHHHHHHTTCEE T ss_pred CCCCCCEEEEEECC---HHHHHHHHHHHHHCCCEE T ss_conf 98999999999398---999999999999879999 No 56 >3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12} Probab=59.25 E-value=11 Score=18.57 Aligned_cols=31 Identities=26% Similarity=0.322 Sum_probs=21.4 Q ss_pred CCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEE Q ss_conf 2897599992004573889999999997899789 Q gi|254780309|r 15 VAGLKILLIDDVYTTGATAKCAAIALKKAGAMTV 48 (59) Q Consensus 15 i~gk~vliVDDiitTG~T~~~~~~~L~~~ga~~V 48 (59) +.||+||||||--+. .......|.+.|.... T Consensus 5 l~g~kILiVDD~~~~---r~~l~~~L~~~g~~v~ 35 (130) T 3eod_A 5 LVGKQILIVEDEQVF---RSLLDSWFSSLGATTV 35 (130) T ss_dssp TTTCEEEEECSCHHH---HHHHHHHHHHTTCEEE T ss_pred CCCCEEEEEECCHHH---HHHHHHHHHHCCCEEE T ss_conf 899989999698999---9999999998899999 No 57 >1gmx_A GLPE protein; transferase, rhodanese, sulfurtransferase, glycerol metabolism; 1.1A {Escherichia coli} SCOP: c.46.1.3 PDB: 1gn0_A Probab=50.92 E-value=14 Score=18.03 Aligned_cols=34 Identities=21% Similarity=0.156 Sum_probs=28.5 Q ss_pred CCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEE Q ss_conf 2897599992004573889999999997899789999 Q gi|254780309|r 15 VAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSIL 51 (59) Q Consensus 15 i~gk~vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~ 51 (59) -++++|++++ .+|.....+++.|++.|-+.|+.+ T Consensus 56 ~~~~~ii~~c---~~g~~s~~~a~~l~~~G~~~v~~l 89 (108) T 1gmx_A 56 DFDTPVMVMC---YHGNSSKGAAQYLLQQGYDVVYSI 89 (108) T ss_dssp CTTSCEEEEC---SSSSHHHHHHHHHHHHTCSSEEEE T ss_pred HCCCCEEEEC---CCCHHHHHHHHHHHHCCCCCEEEE T ss_conf 2468704788---998589999999998499577985 No 58 >3ohg_A Uncharacterized protein from DUF2233 family; structural genomics, unknown function, joint center for STRU genomics, JCSG; HET: MSE; 1.80A {Bacteroides ovatus} Probab=45.19 E-value=13 Score=18.11 Aligned_cols=34 Identities=18% Similarity=0.295 Sum_probs=25.9 Q ss_pred CCCEEEE--EE-----ECCCCCHHHHHHHHHHHHCCCCEEE Q ss_conf 8975999--92-----0045738899999999978997899 Q gi|254780309|r 16 AGLKILL--ID-----DVYTTGATAKCAAIALKKAGAMTVS 49 (59) Q Consensus 16 ~gk~vli--VD-----DiitTG~T~~~~~~~L~~~ga~~V~ 49 (59) .||.+++ || +-...|.|+.+.++.|++.|+..-. T Consensus 197 dGk~l~lvvvDGR~~~~~~s~GlTl~Ela~~l~~lG~~~Al 237 (285) T 3ohg_A 197 DRKTMYVFVVDGRRKDSFFALGLTLPHLATMMKAVGCYNAI 237 (285) T ss_dssp TSSEEEEEEECCSCCSTTCCCCBCHHHHHHHHHHHTCSEEE T ss_pred CCCEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHCCCCEEE T ss_conf 99999999984865787767887999999999975975489 No 59 >2pkp_A Homoaconitase small subunit; beta barrel, amino-acid biosynthesis, leucine biosynthesis, structural genomics, NPPSFA; 2.10A {Methanocaldococcus jannaschii} Probab=44.84 E-value=7.1 Score=19.58 Aligned_cols=48 Identities=23% Similarity=0.362 Sum_probs=40.1 Q ss_pred CCHHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEEEE Q ss_conf 510210028975999920045738899999999978997899999983 Q gi|254780309|r 8 PQYVSKHVAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILTFSR 55 (59) Q Consensus 8 ~~~~~~~i~gk~vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~~lar 55 (59) .++....++.-+||+.++-+=+|++=.+++..|+..|.+.|..-.++| T Consensus 42 ~~~f~~~~~~g~IlVaG~NFG~GSSRE~A~~al~~~Gi~aVIA~SFa~ 89 (170) T 2pkp_A 42 DENFPKKVKEGDVIVAGENFGCGSSREQAVIAIKYCGIKAVIAKSFAR 89 (170) T ss_dssp CTTHHHHCCTTCEEEECTTBTBSSCCHHHHHHHHTTTCCEEEESCBCH T ss_pred CCHHHHCCCCCCEEEECCCCCCCCCCHHHHHHHHHHCCCEEEEEHHHH T ss_conf 731343257888899668613898865888999993997999805899 No 60 >3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901} Probab=43.02 E-value=19 Score=17.32 Aligned_cols=29 Identities=34% Similarity=0.361 Sum_probs=14.3 Q ss_pred CCCCEEEEEEECCCCCHHHHHHHHHHHHCCCC Q ss_conf 28975999920045738899999999978997 Q gi|254780309|r 15 VAGLKILLIDDVYTTGATAKCAAIALKKAGAM 46 (59) Q Consensus 15 i~gk~vliVDDiitTG~T~~~~~~~L~~~ga~ 46 (59) ++||.||||||--+. ...+...|...|.. T Consensus 3 lk~~rILiVDD~~~~---~~~l~~~L~~~g~~ 31 (140) T 3h5i_A 3 LKDKKILIVEDSKFQ---AKTIANILNKYGYT 31 (140) T ss_dssp ---CEEEEECSCHHH---HHHHHHHHHHTTCE T ss_pred CCCCEEEEEECCHHH---HHHHHHHHHHCCCE T ss_conf 899999999598999---99999999987999 No 61 >1wif_A RSGI RUH-020, riken cDNA 4930408O21; PDZ domain, structural genomics, mouse cDNA, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.36.1.1 Probab=42.53 E-value=21 Score=17.06 Aligned_cols=41 Identities=17% Similarity=0.096 Sum_probs=32.7 Q ss_pred C-CCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEEEE Q ss_conf 2-8975999920045738899999999978997899999983 Q gi|254780309|r 15 V-AGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILTFSR 55 (59) Q Consensus 15 i-~gk~vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~~lar 55 (59) | .|-.|+-|++.-..|.|..++.+.|+.......--+.+.| T Consensus 68 l~~GD~Il~INg~~v~~~~~~ev~~~lk~~~~g~~v~L~v~R 109 (126) T 1wif_A 68 LQPGDVLISVGHANVLGYTLREFLKLLQNITIGTVLQIKAYR 109 (126) T ss_dssp SCTTCBEEEESSSCCTTCCHHHHHHHHTSCCSSCEEEEEEES T ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHHCCCCCCEEEEEEEE T ss_conf 998999999999997899899999999679999989999994 No 62 >3ilm_A ALR3790 protein; rhodanese-like, NSR437H, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.26A {Nostoc SP} PDB: 2kl3_A Probab=42.19 E-value=21 Score=17.03 Aligned_cols=33 Identities=24% Similarity=0.184 Sum_probs=27.6 Q ss_pred CCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEE Q ss_conf 897599992004573889999999997899789999 Q gi|254780309|r 16 AGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSIL 51 (59) Q Consensus 16 ~gk~vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~ 51 (59) ++++|++++ .+|.....++..|++.|-+.|+.+ T Consensus 55 ~~~~ivvyC---~~g~rs~~aa~~L~~~G~~~V~~l 87 (141) T 3ilm_A 55 KSRDIYVYG---AGDEQTSQAVNLLRSAGFEHVSEL 87 (141) T ss_dssp TTSEEEEEC---SSHHHHHHHHHHHHHTTCCSEEEC T ss_pred CCCCEEEEC---CCCHHHHHHHHHHHHCCCCCEEEE T ss_conf 888679989---997589999999997497477995 No 63 >3gge_A PDZ domain-containing protein GIPC2; structural genomics, structural genomics consortium, SGC, cytoplasm, polymorphism, protein binding; 2.60A {Homo sapiens} Probab=41.90 E-value=21 Score=17.00 Aligned_cols=43 Identities=19% Similarity=0.068 Sum_probs=35.7 Q ss_pred CCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEEEEECC Q ss_conf 8975999920045738899999999978997899999983068 Q gi|254780309|r 16 AGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILTFSRSLK 58 (59) Q Consensus 16 ~gk~vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~~lar~~~ 58 (59) .|-.|+=|++.-.+|.|..++.+.|++........+.+.+..+ T Consensus 49 ~GD~Il~VNg~~v~~~t~~ev~~~Lk~~~~~~~~~l~l~~p~k 91 (95) T 3gge_A 49 VGDHIESINGENIVGWRHYDVAKKLKELKKEELFTMKLIEPKK 91 (95) T ss_dssp TTCEEEEETTEECTTCCHHHHHHHHHHSCTTCEEEEEEEEECS T ss_pred CCCEEEEECCEECCCCCHHHHHHHHHCCCCCCEEEEEEECCCC T ss_conf 9999999999998899799999999769999789999937886 No 64 >2yt7_A Amyloid beta A4 precursor protein-binding family A member 3; neuron-specific X11L2 protein, neuronal MUNC18-1-interacting protein 3, MINT-3; NMR {Homo sapiens} Probab=41.43 E-value=22 Score=16.96 Aligned_cols=45 Identities=13% Similarity=0.192 Sum_probs=34.7 Q ss_pred CCC-CCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEEEEECC Q ss_conf 028-975999920045738899999999978997899999983068 Q gi|254780309|r 14 HVA-GLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILTFSRSLK 58 (59) Q Consensus 14 ~i~-gk~vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~~lar~~~ 58 (59) .++ |-.|+=|++.-.+|.|..++.+.|++........+.+.|..| T Consensus 55 ~L~~GD~Il~VNg~~v~~~~~~~~~~~l~~~~~~~~v~l~v~~~pP 100 (101) T 2yt7_A 55 ALSIGDRLTAINGTSLVGLPLAACQAAVRETKSQTSVTLSIVHCPP 100 (101) T ss_dssp SCCTTCEEEEESSCBCTTSCHHHHHHHHHHTTTSSEEEEEECCCCC T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHHHHCCCCCCEEEEEEECCCC T ss_conf 9987999999999998899899999999749999989999983899 No 65 >2fsx_A RV0390, COG0607: rhodanese-related sulfurtransferase; RV0390 BR SAD DATA with FBAR, structural genomics, PSI; 1.80A {Mycobacterium tuberculosis F11} Probab=40.12 E-value=23 Score=16.85 Aligned_cols=33 Identities=15% Similarity=0.150 Sum_probs=28.1 Q ss_pred CCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEE Q ss_conf 897599992004573889999999997899789999 Q gi|254780309|r 16 AGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSIL 51 (59) Q Consensus 16 ~gk~vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~ 51 (59) ++++|++++ .+|.....++..|.+.|-++|+.+ T Consensus 79 ~~~~Iiv~C---~~G~rS~~aa~~L~~~Gf~~v~~l 111 (148) T 2fsx_A 79 HERPVIFLC---RSGNRSIGAAEVATEAGITPAYNV 111 (148) T ss_dssp --CCEEEEC---SSSSTHHHHHHHHHHTTCCSEEEE T ss_pred CCCEEEEEC---CCCHHHHHHHHHHHHCCCCCEEEE T ss_conf 998699988---998799999999998497457994 No 66 >2kom_A Partitioning defective 3 homolog; PAR-3B, PDZ domain, PSI, structural genomics, alternative splicing, cell cycle, cell division, cell junction; NMR {Homo sapiens} Probab=38.89 E-value=24 Score=16.74 Aligned_cols=41 Identities=17% Similarity=0.187 Sum_probs=33.8 Q ss_pred CCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEEEEE Q ss_conf 89759999200457388999999999789978999999830 Q gi|254780309|r 16 AGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILTFSRS 56 (59) Q Consensus 16 ~gk~vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~~lar~ 56 (59) .|-.|+=|+..-..|.|..++.+.|++.+......+.++|- T Consensus 79 ~GD~Il~VNG~~v~~~t~~ea~~lL~~~~~~~~v~L~V~R~ 119 (121) T 2kom_A 79 AGDRLIEVNGVDLVGKSQEEVVSLLRSTKMEGTVSLLVFRQ 119 (121) T ss_dssp SSSEEEEETTEECTTSCHHHHHHHHHHCCSSCEEEEEEEEC T ss_pred CCCEEEEECCEECCCCCHHHHHHHHHCCCCCCEEEEEEECC T ss_conf 89999999999978998999999997189989899999779 No 67 >2vsv_A Rhophilin-2; scaffold protein, RHO GTPase binding, protein-binding, RHOB, nitration, cytoplasm, PDZ domain, CAsp8; 1.82A {Homo sapiens} Probab=38.41 E-value=24 Score=16.70 Aligned_cols=41 Identities=22% Similarity=0.042 Sum_probs=34.4 Q ss_pred CCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEEEE Q ss_conf 28975999920045738899999999978997899999983 Q gi|254780309|r 15 VAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILTFSR 55 (59) Q Consensus 15 i~gk~vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~~lar 55 (59) -.|-.|+=|++.-..|.|..++.+.|+..+...|.+-++.+ T Consensus 63 ~~GD~Il~INg~~v~~~t~~evv~~lr~~~~~~v~L~Vv~~ 103 (109) T 2vsv_A 63 REGDYIVSIQLVDCKWLTLSEVMKLLKSFGEDEIEMKVVSL 103 (109) T ss_dssp CTTCEEEEETTEECTTCCHHHHHHHHHTTTTSCEEEEEESC T ss_pred CCCCEEEEECCEECCCCCHHHHHHHHHCCCCCEEEEEEECC T ss_conf 99999999999998999899999998778997489999787 No 68 >1vr0_A Probable 2-phosphosulfolactate phosphatase; 15026306, putative 2-phosphosulfolactate phosphatase, structural genomics; HET: 3SL; 2.49A {Clostridium acetobutylicum} SCOP: c.148.1.1 Probab=38.03 E-value=25 Score=16.66 Aligned_cols=35 Identities=14% Similarity=0.192 Sum_probs=25.6 Q ss_pred HHCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEE Q ss_conf 1002897599992004573889999999997899789999 Q gi|254780309|r 12 SKHVAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSIL 51 (59) Q Consensus 12 ~~~i~gk~vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~ 51 (59) ..+++|+.+++| ||+-..+|+.. ...+|+++|+.+ T Consensus 26 ~~~~~~~~vVVI-DVLRAtTTi~~----Al~~Ga~~V~Pv 60 (247) T 1vr0_A 26 EEKVKNKTAVVI-DMLRATSVITT----ALNNGCKRVVPV 60 (247) T ss_dssp GGGTTTSEEEEE-CTTTHHHHHHH----HHHTTCCEEEEC T ss_pred HHHCCCCEEEEE-ECCCHHHHHHH----HHHCCCCEEEEE T ss_conf 644389979999-78876999999----998799889996 No 69 >1qxn_A SUD, sulfide dehydrogenase; polysulfide-sulfur transferase, homodimer; NMR {Wolinella succinogenes} SCOP: c.46.1.3 Probab=37.65 E-value=24 Score=16.71 Aligned_cols=34 Identities=21% Similarity=0.133 Sum_probs=28.2 Q ss_pred CCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEE Q ss_conf 2897599992004573889999999997899789999 Q gi|254780309|r 15 VAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSIL 51 (59) Q Consensus 15 i~gk~vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~ 51 (59) -++++|++++. +|.....++..|.+.|-..|+.+ T Consensus 80 ~~~~~ivv~C~---~G~rS~~aa~~L~~~G~~nV~~l 113 (137) T 1qxn_A 80 DPEKPVVVFCK---TAARAALAGKTLREYGFKTIYNS 113 (137) T ss_dssp CTTSCEEEECC---SSSCHHHHHHHHHHHTCSCEEEE T ss_pred CCCCCEEEECC---CCCCHHHHHHHHHHCCCCCEEEE T ss_conf 97763798738---99839999999998499667980 No 70 >2jba_A Phosphate regulon transcriptional regulatory protein PHOB; transcription factor, sensory transduction, phosphate regulation; 1.45A {Escherichia coli} PDB: 2jba_B 1b00_A 2iyn_A 2jb9_A 1zes_A Probab=36.28 E-value=26 Score=16.51 Aligned_cols=27 Identities=19% Similarity=0.347 Sum_probs=17.6 Q ss_pred CCEEEEEEECCCCCHHHHHHHHHHHHCCCC Q ss_conf 975999920045738899999999978997 Q gi|254780309|r 17 GLKILLIDDVYTTGATAKCAAIALKKAGAM 46 (59) Q Consensus 17 gk~vliVDDiitTG~T~~~~~~~L~~~ga~ 46 (59) +|.||+|||-- .........|...|.. T Consensus 2 ~~rILiVDDd~---~~~~~l~~~L~~~G~~ 28 (127) T 2jba_A 2 ARRILVVEDEA---PIREMVCFVLEQNGFQ 28 (127) T ss_dssp CCEEEEECSCH---HHHHHHHHHHHHTTCE T ss_pred CCCEEEEECCH---HHHHHHHHHHHHCCCE T ss_conf 98899997999---9999999999987999 No 71 >1tq1_A AT5G66040, senescence-associated family protein; CESG, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} SCOP: c.46.1.3 Probab=36.05 E-value=24 Score=16.69 Aligned_cols=33 Identities=21% Similarity=0.150 Sum_probs=28.3 Q ss_pred CCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEE Q ss_conf 897599992004573889999999997899789999 Q gi|254780309|r 16 AGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSIL 51 (59) Q Consensus 16 ~gk~vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~ 51 (59) ++++|++++ .+|.....++..|+..|-.+|+.+ T Consensus 81 ~~~~vi~~C---~~G~rs~~aa~~L~~~G~~~v~~l 113 (129) T 1tq1_A 81 QSDNIIVGC---QSGGRSIKATTDLLHAGFTGVKDI 113 (129) T ss_dssp TTSSEEEEE---SSCSHHHHHHHHHHHHHCCSEEEE T ss_pred CCCEEEEEC---CCCHHHHHHHHHHHHCCCCCEEEE T ss_conf 998499988---998499999999998189687993 No 72 >1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1 Probab=34.86 E-value=25 Score=16.65 Aligned_cols=38 Identities=18% Similarity=0.233 Sum_probs=32.1 Q ss_pred HHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEE Q ss_conf 021002897599992004573889999999997899789999 Q gi|254780309|r 10 YVSKHVAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSIL 51 (59) Q Consensus 10 ~~~~~i~gk~vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~ 51 (59) ....++.++++++|- +|.+...+++.|.+.|...+.++ T Consensus 160 ~~~~~l~~~~vLviG----aGem~~~~~~~L~~~g~~~i~v~ 197 (404) T 1gpj_A 160 RELGSLHDKTVLVVG----AGEMGKTVAKSLVDRGVRAVLVA 197 (404) T ss_dssp HHHSCCTTCEEEEES----CCHHHHHHHHHHHHHCCSEEEEE T ss_pred HHCCCCCCCEEEEEC----CCHHHHHHHHHHHHCCCCCEEEE T ss_conf 861573348189983----84889999999995688860786 No 73 >2vsp_A PDZ domain-containing protein 1; membrane, cytoplasm, phosphoprotein, transport protein, CAsp; 2.60A {Homo sapiens} PDB: 2eej_A Probab=33.47 E-value=29 Score=16.25 Aligned_cols=40 Identities=13% Similarity=0.184 Sum_probs=33.0 Q ss_pred CCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEEEEE Q ss_conf 89759999200457388999999999789978999999830 Q gi|254780309|r 16 AGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILTFSRS 56 (59) Q Consensus 16 ~gk~vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~~lar~ 56 (59) .|-.++=|++.-.++.|..++.+.|+..+. .+...++.+. T Consensus 47 ~GD~Il~VnG~~v~~~~~~ev~~~l~~~~~-~v~L~V~~~~ 86 (91) T 2vsp_A 47 DEDVIIEVNGVNVLDEPYEKVVDRIQSSGK-NVTLLVCGKK 86 (91) T ss_dssp TTCEEEEETTEECTTSCHHHHHHHHTTSCS-EEEEEEEC-- T ss_pred CCCEEEEECCEECCCCCHHHHHHHHHCCCC-EEEEEEECCC T ss_conf 999999999999999989999999975999-6999998988 No 74 >1u7z_A Coenzyme A biosynthesis bifunctional protein coabc; ligase; HET: PMT; 2.30A {Escherichia coli} SCOP: c.72.3.1 PDB: 1u7w_A* 1u7u_A* 1u80_A* Probab=32.25 E-value=31 Score=16.13 Aligned_cols=39 Identities=23% Similarity=0.337 Sum_probs=32.1 Q ss_pred HCCCCCEEEE--------EEEC-----CCCCHHHHHHHHHHHHCCCCEEEEE Q ss_conf 0028975999--------9200-----4573889999999997899789999 Q gi|254780309|r 13 KHVAGLKILL--------IDDV-----YTTGATAKCAAIALKKAGAMTVSIL 51 (59) Q Consensus 13 ~~i~gk~vli--------VDDi-----itTG~T~~~~~~~L~~~ga~~V~~~ 51 (59) .+++|++||| +|+| -.||.+=.++++.+..+|+....+. T Consensus 4 ~~l~g~~vlIT~G~T~E~ID~VR~ItN~SSGk~G~~iA~~~~~~Ga~V~li~ 55 (226) T 1u7z_A 4 NDLKHLNIMITAGPTREPLDPVRYISDHSSGKMGFAIAAAAARRGANVTLVS 55 (226) T ss_dssp CTTTTCEEEEEESBCEEESSSSEEEEECCCSHHHHHHHHHHHHTTCEEEEEE T ss_pred HHCCCCEEEEECCCCCCCCCCCCEECCCCCHHHHHHHHHHHHHCCCEEEEEE T ss_conf 0028998999668975666871363637821999999868987898899997 No 75 >3bpu_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; zinc, structural genomics consortium, SGC, alternative splicing; 1.60A {Homo sapiens} Probab=31.33 E-value=32 Score=16.05 Aligned_cols=42 Identities=14% Similarity=0.042 Sum_probs=32.7 Q ss_pred CCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEEEEEC Q ss_conf 897599992004573889999999997899789999998306 Q gi|254780309|r 16 AGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILTFSRSL 57 (59) Q Consensus 16 ~gk~vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~~lar~~ 57 (59) .|-.++=|++.-.+|.|..++.+.|++.....-..+.+.|-. T Consensus 45 ~GD~Il~INg~~v~~~~~~e~v~~ir~~~~~~~v~l~V~R~~ 86 (88) T 3bpu_A 45 EGDLIVEVNKKNVQALTHNQVVDMLVESPKGSEVTLLVQRQT 86 (88) T ss_dssp TTCEEEEETTEECTTSCHHHHHHHHHTSCTTCEEEEEEEEEC T ss_pred CCCEEEEECCEECCCCCHHHHHHHHHCCCCCCEEEEEEEECC T ss_conf 899999999999789989999999973999899999999789 No 76 >3lte_A Response regulator; structural genomics, PSI, protein structure initiative, nysgrc, NEW YORK structural genomix research consortium; 2.00A {Bermanella marisrubri} Probab=31.15 E-value=32 Score=16.03 Aligned_cols=28 Identities=21% Similarity=0.235 Sum_probs=17.4 Q ss_pred CCCEEEEEEECCCCCHHHHHHHHHHHHCCCC Q ss_conf 8975999920045738899999999978997 Q gi|254780309|r 16 AGLKILLIDDVYTTGATAKCAAIALKKAGAM 46 (59) Q Consensus 16 ~gk~vliVDDiitTG~T~~~~~~~L~~~ga~ 46 (59) +.|.||||||--... ....+.|...|.. T Consensus 5 ~~krILiVDDd~~~~---~~l~~~L~~~g~~ 32 (132) T 3lte_A 5 QSKRILVVDDDQAMA---AAIERVLKRDHWQ 32 (132) T ss_dssp --CEEEEECSCHHHH---HHHHHHHHHTTCE T ss_pred CCCEEEEEECCHHHH---HHHHHHHHHCCCE T ss_conf 898699997999999---9999999988999 No 77 >3hix_A ALR3790 protein; rhodanese, rhodanese_3, Q8YQN0, Q8YQN0_anAsp, NSR437I, NESG, structural genomics, PSI-2, protein structure initiative; 1.92A {Anabaena SP} PDB: 3k9r_A Probab=30.90 E-value=33 Score=16.01 Aligned_cols=33 Identities=24% Similarity=0.184 Sum_probs=27.6 Q ss_pred CCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEE Q ss_conf 897599992004573889999999997899789999 Q gi|254780309|r 16 AGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSIL 51 (59) Q Consensus 16 ~gk~vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~ 51 (59) ++++|+++. .+|.....++..|++.|-.+|+.+ T Consensus 51 ~~~~Iv~~C---~~g~rs~~aa~~L~~~G~~nv~~l 83 (106) T 3hix_A 51 KSRDIYVYG---AGDEQTSQAVNLLRSAGFEHVSEL 83 (106) T ss_dssp TTSCEEEEC---SSHHHHHHHHHHHHHTTCSCEEEC T ss_pred CCCEEEEEC---CCCHHHHHHHHHHHHCCCCCEEEE T ss_conf 998499999---998299999999998298578994 No 78 >2hcu_A 3-isopropylmalate dehydratase small subunit; beta barrel, lyase; 2.10A {Streptococcus mutans} Probab=30.82 E-value=17 Score=17.54 Aligned_cols=43 Identities=23% Similarity=0.295 Sum_probs=38.0 Q ss_pred HCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEEEE Q ss_conf 0028975999920045738899999999978997899999983 Q gi|254780309|r 13 KHVAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILTFSR 55 (59) Q Consensus 13 ~~i~gk~vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~~lar 55 (59) +..++..||+-.+-.=.|++=.++...|+..|.+.|..-.+|+ T Consensus 81 ~~~~~a~IlVaG~NFGcGSSREhA~~aL~~~Gi~aVIA~SFa~ 123 (213) T 2hcu_A 81 PEYREASILITGDNFGAGSSREHAAWALADYGFKVIVAGSFGD 123 (213) T ss_dssp GGGTTCCEEEECSSBTCSSCCHHHHHHHHHHTCCEEEESCBCH T ss_pred CCCCCCCEEEECCCCCCCCCHHHHHHHHHHCCCCEEEHHHHHH T ss_conf 4457870899446323576347898999985976884244999 No 79 >1qo0_D AMIR; binding protein, gene regulator, receptor; 2.25A {Pseudomonas aeruginosa} SCOP: c.23.1.3 Probab=30.27 E-value=33 Score=15.95 Aligned_cols=40 Identities=10% Similarity=0.163 Sum_probs=25.6 Q ss_pred HHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEE Q ss_conf 0210028975999920045738899999999978997899999 Q gi|254780309|r 10 YVSKHVAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILT 52 (59) Q Consensus 10 ~~~~~i~gk~vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~~ 52 (59) .+...+++-+||+|||--+ .-......|...|.....++. T Consensus 5 ~l~~~l~~l~vLvvdd~~~---~~~~l~~~L~~~G~~v~~~~~ 44 (196) T 1qo0_D 5 SLLGSLRELQVLVLNPPGE---VSDALVLQLIRIGCSVRQCWP 44 (196) T ss_dssp HHHHTGGGCEEEEESCTTH---HHHHHHHHHHHHTCEEEEECS T ss_pred HHHHHCCCCEEEEEECCHH---HHHHHHHHHHHCCCEEECCCC T ss_conf 7876466986999957999---999999999986998871699 No 80 >3kht_A Response regulator; PSI-II, structural genomics, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.10A {Hahella chejuensis kctc 2396} Probab=30.03 E-value=18 Score=17.39 Aligned_cols=29 Identities=10% Similarity=0.171 Sum_probs=18.9 Q ss_pred CCCCEEEEEEECCCCCHHHHHHHHHHHHCCCC Q ss_conf 28975999920045738899999999978997 Q gi|254780309|r 15 VAGLKILLIDDVYTTGATAKCAAIALKKAGAM 46 (59) Q Consensus 15 i~gk~vliVDDiitTG~T~~~~~~~L~~~ga~ 46 (59) ++||+||||||--+. .....+.|.+.|.. T Consensus 3 l~~krILlVdD~~~~---~~~l~~~L~~~g~~ 31 (144) T 3kht_A 3 LRSKRVLVVEDNPDD---IALIRRVLDRKDIH 31 (144) T ss_dssp --CEEEEEECCCHHH---HHHHHHHHHHTTCC T ss_pred CCCCEEEEEECCHHH---HHHHHHHHHHCCCC T ss_conf 889989999589999---99999999968998 No 81 >1yt8_A Thiosulfate sulfurtransferase; rhodanase domains, cyanide detoxification, structural genomics, PSI, protein structure initiative; 1.90A {Pseudomonas aeruginosa} SCOP: c.46.1.2 c.46.1.2 c.46.1.2 c.46.1.2 Probab=28.05 E-value=37 Score=15.73 Aligned_cols=33 Identities=30% Similarity=0.309 Sum_probs=20.1 Q ss_pred CCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEE Q ss_conf 897599992004573889999999997899789999 Q gi|254780309|r 16 AGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSIL 51 (59) Q Consensus 16 ~gk~vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~ 51 (59) ++++|+++|| +|.....++..|+..|-.+|+++ T Consensus 62 ~~~~iVlyd~---~~~~a~raa~~L~~~G~~~V~vL 94 (539) T 1yt8_A 62 RDTPITVYDD---GEGLAPVAAQRLHDLGYSDVALL 94 (539) T ss_dssp TTSCEEEECS---SSSHHHHHHHHHHHTTCSSEEEE T ss_pred CCCEEEEEEC---CCCHHHHHHHHHHHCCCCCEEEE T ss_conf 9986999979---89879999999997599877884 No 82 >3h5j_A 3-isopropylmalate dehydratase small subunit; leucine biosynthesis, isopropylmalate isomerase, LEUD, amino-acid biosynthesis; 1.20A {Mycobacterium tuberculosis} PDB: 3h5h_A 3h5e_A Probab=26.27 E-value=18 Score=17.44 Aligned_cols=43 Identities=21% Similarity=0.190 Sum_probs=36.9 Q ss_pred HCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEEEE Q ss_conf 0028975999920045738899999999978997899999983 Q gi|254780309|r 13 KHVAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILTFSR 55 (59) Q Consensus 13 ~~i~gk~vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~~lar 55 (59) ...++..||+-.+-+=.|++=+++...|+..|.+.|..-++|| T Consensus 60 ~~~~~~~IlVaG~NFGcGSSREhA~~al~~~Gi~aVIA~SFa~ 102 (171) T 3h5j_A 60 SPFDRGSVLVAGPDFGTGSSREHAVWALMDYGFRVVISSRFGD 102 (171) T ss_dssp TTGGGCCEEEECSSBTCSSCCHHHHHHHHHHTCCEEEESSBCH T ss_pred CCCCCCCEEEECCCCCCCCCHHHHHHHHHHCCCCEEEEHHHHH T ss_conf 4668971999778426773088999999986978998357999 No 83 >2d92_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens} Probab=25.45 E-value=41 Score=15.46 Aligned_cols=41 Identities=12% Similarity=0.117 Sum_probs=33.8 Q ss_pred CC-CCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEEEEE Q ss_conf 28-9759999200457388999999999789978999999830 Q gi|254780309|r 15 VA-GLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILTFSRS 56 (59) Q Consensus 15 i~-gk~vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~~lar~ 56 (59) |+ |-.|+=|++.-.+|.|..++.+.|++.....|... ++|. T Consensus 63 L~~GD~Il~VNg~~v~~~~~~e~~~llk~~~~~~V~L~-v~r~ 104 (108) T 2d92_A 63 LLPGDRLVSVNEYCLDNTSLAEAVEILKAVPPGLVHLG-ICSG 104 (108) T ss_dssp CCTTCEEEEESSCBCTTCCHHHHHHHHHHSCSEEEEEE-EECC T ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHHCCCCCEEEEE-EEEC T ss_conf 99699999999999889989999999962899869999-9948 No 84 >1v7l_A 3-isopropylmalate dehydratase small subunit; beta barrel, lyase; 1.98A {Pyrococcus horikoshii OT3} SCOP: c.8.2.1 Probab=25.44 E-value=12 Score=18.37 Aligned_cols=48 Identities=23% Similarity=0.330 Sum_probs=39.8 Q ss_pred CCHHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEEEE Q ss_conf 510210028975999920045738899999999978997899999983 Q gi|254780309|r 8 PQYVSKHVAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILTFSR 55 (59) Q Consensus 8 ~~~~~~~i~gk~vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~~lar 55 (59) .++.....++-+|++-.+-+=+|++=.+++..++..|.+.|..-+++| T Consensus 42 ~p~f~~~~~~g~IlVaG~nFG~GSSRE~A~~al~~~Gi~aVIA~SFar 89 (163) T 1v7l_A 42 RPDFARNVRPGDVVVAGKNFGIGSSRESAALALKALGIAGVIAESFGR 89 (163) T ss_dssp CTTHHHHCCTTCEEECCSSBTBSCCCTHHHHHHHHHTCCEEEESCBCH T ss_pred CCCHHHCCCCCCEEEECCCEECCCCHHHHHHHHHHHCCCEEEEEHHHH T ss_conf 952786178886899728553587768999999982998999825999 No 85 >1u37_A Amyloid beta A4 precursor protein-binding, family A, member 1; X11S/mints, PDZ domain, scaffold protein, protein trafficking, protein transport; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 1u38_A Probab=24.73 E-value=42 Score=15.38 Aligned_cols=41 Identities=17% Similarity=0.176 Sum_probs=32.2 Q ss_pred C-CCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEEEE Q ss_conf 2-8975999920045738899999999978997899999983 Q gi|254780309|r 15 V-AGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILTFSR 55 (59) Q Consensus 15 i-~gk~vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~~lar 55 (59) + .|-.++=|+..-..|.|..++.+.|++++....-.+.+.| T Consensus 48 l~~GD~Il~VNg~~v~~~~~~~~~~~l~~~~~~~~v~L~v~R 89 (89) T 1u37_A 48 LNIGDQIMSINGTSLVGLPLSTCQSIIKGLKNQSRVKLNIVR 89 (89) T ss_dssp CCSSCEEEEETTEECTTSCHHHHHHHHHTCSSSSEEEEEEEC T ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHHCCCCCCEEEEEEEC T ss_conf 999999999999998899899999999739999899999989 No 86 >3h1g_A Chemotaxis protein CHEY homolog; sulfate-bound CHEY, cytoplasm, flagellar rotatio magnesium, metal-binding, phosphoprotein; 1.70A {Helicobacter pylori} PDB: 3gwg_A 3h1e_A 3h1f_A Probab=24.69 E-value=43 Score=15.38 Aligned_cols=33 Identities=24% Similarity=0.335 Sum_probs=20.4 Q ss_pred CCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEE Q ss_conf 289759999200457388999999999789978999 Q gi|254780309|r 15 VAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSI 50 (59) Q Consensus 15 i~gk~vliVDDiitTG~T~~~~~~~L~~~ga~~V~~ 50 (59) +++..||||||--+. .....+.|.+.|...|.. T Consensus 3 l~~lrILiVDD~~~~---~~~l~~~L~~~g~~~v~~ 35 (129) T 3h1g_A 3 LGSMKLLVVDDSSTM---RRIIKNTLSRLGYEDVLE 35 (129) T ss_dssp ---CCEEEECSCHHH---HHHHHHHHHHTTCCCEEE T ss_pred CCCCEEEEEECCHHH---HHHHHHHHHHCCCEEEEE T ss_conf 878899999288999---999999999869969999 No 87 >2k0z_A Uncharacterized protein HP1203; A/B domain, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Helicobacter pylori 26695} Probab=24.35 E-value=43 Score=15.34 Aligned_cols=32 Identities=25% Similarity=0.166 Sum_probs=27.4 Q ss_pred CCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEE Q ss_conf 28975999920045738899999999978997899 Q gi|254780309|r 15 VAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVS 49 (59) Q Consensus 15 i~gk~vliVDDiitTG~T~~~~~~~L~~~ga~~V~ 49 (59) -++++|+++.. +|.....++..|.+.|-..++ T Consensus 54 ~k~~~iiv~C~---sG~rS~~a~~~L~~~G~~~v~ 85 (110) T 2k0z_A 54 HKDKKVLLHCR---AGRRALDAAKSMHELGYTPYY 85 (110) T ss_dssp CSSSCEEEECS---SSHHHHHHHHHHHHTTCCCEE T ss_pred CCCCCEEEECC---CCHHHHHHHHHHHHCCCCEEE T ss_conf 79986899889---984899999999985998799 No 88 >2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense} Probab=24.10 E-value=44 Score=15.32 Aligned_cols=34 Identities=26% Similarity=0.345 Sum_probs=29.9 Q ss_pred CCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEE Q ss_conf 28975999920045738899999999978997899999 Q gi|254780309|r 15 VAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILT 52 (59) Q Consensus 15 i~gk~vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~~ 52 (59) ..||+|+||- .|.|...++..+...|+++|.++. T Consensus 262 ~~gk~VvVIG----gG~vA~D~A~~a~r~ga~~V~vv~ 295 (456) T 2vdc_G 262 AAGKHVVVLG----GGDTAMDCVRTAIRQGATSVKCLY 295 (456) T ss_dssp CCCSEEEEEC----SSHHHHHHHHHHHHTTCSEEEEEC T ss_pred CCCCEEEEEC----CCHHHHHHHHHHHHCCCCEEEEEE T ss_conf 7898799989----778999999999974798599987 No 89 >2yyv_A Probable 2-phosphosulfolactate phosphatase; uncharacterized conserved protein, structural genomics, NPPSFA; 1.65A {Thermotoga maritima MSB8} PDB: 2yzo_A Probab=24.10 E-value=44 Score=15.32 Aligned_cols=34 Identities=24% Similarity=0.168 Sum_probs=23.4 Q ss_pred HCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEE Q ss_conf 002897599992004573889999999997899789999 Q gi|254780309|r 13 KHVAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSIL 51 (59) Q Consensus 13 ~~i~gk~vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~ 51 (59) ..++++.+++| ||+--.+|+.. +..+|+++|+.+ T Consensus 10 ~~~~~~~~VVI-DVLRAsTti~~----al~~Ga~~V~Pv 43 (227) T 2yyv_A 10 SPVECRTAVVI-DVLRATSTIVT----ALSNGASGVIPV 43 (227) T ss_dssp SCEECSEEEEE-CTTTHHHHHHH----HHHTTCSEEEEC T ss_pred CCCCCCEEEEE-ECCCHHHHHHH----HHHCCCCEEEEC T ss_conf 76789979999-78876999999----998899889976 No 90 >1tks_A 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavin biosynthesis, synthetic gene, isomerase; 1.60A {Candida albicans SC5314} SCOP: d.115.1.2 PDB: 1tku_A* 2ris_A 2riu_A* Probab=23.98 E-value=12 Score=18.37 Aligned_cols=11 Identities=27% Similarity=0.540 Sum_probs=8.8 Q ss_pred CCCCEEEEEEE Q ss_conf 28975999920 Q gi|254780309|r 15 VAGLKILLIDD 25 (59) Q Consensus 15 i~gk~vliVDD 25 (59) -+|+.|+|+|| T Consensus 16 k~G~~Viv~Dd 26 (204) T 1tks_A 16 KNGEFLIVMDD 26 (204) T ss_dssp HTTCCEEEESS T ss_pred HCCCEEEEEEC T ss_conf 88996999868 No 91 >3d1p_A Putative thiosulfate sulfurtransferase YOR285W; atomic structure, atomic resolution structure, PSI, MCSG; HET: MSE; 0.98A {Saccharomyces cerevisiae} Probab=23.92 E-value=44 Score=15.30 Aligned_cols=33 Identities=12% Similarity=0.162 Sum_probs=28.1 Q ss_pred CCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEE Q ss_conf 897599992004573889999999997899789999 Q gi|254780309|r 16 AGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSIL 51 (59) Q Consensus 16 ~gk~vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~ 51 (59) ++++|++.. -+|.+...++..|++.|-+.|+.+ T Consensus 90 ~~~~iv~~C---~~G~rs~~a~~~L~~~G~~~v~~l 122 (139) T 3d1p_A 90 SAKELIFYC---ASGKRGGEAQKVASSHGYSNTSLY 122 (139) T ss_dssp TTSEEEEEC---SSSHHHHHHHHHHHTTTCCSEEEC T ss_pred CCCEEEEEC---CCCCHHHHHHHHHHHCCCCCEEEE T ss_conf 998499988---998389999999998599787993 No 92 >1uep_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1 Probab=23.42 E-value=39 Score=15.56 Aligned_cols=41 Identities=20% Similarity=0.250 Sum_probs=31.5 Q ss_pred CCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEEEEE Q ss_conf 89759999200457388999999999789978999999830 Q gi|254780309|r 16 AGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILTFSRS 56 (59) Q Consensus 16 ~gk~vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~~lar~ 56 (59) .|-.|+=|+..-..|.|..++.+.|+..+......+++.|- T Consensus 55 ~GD~Il~VNg~~v~~~~~~e~~~llr~~~~~~~v~l~v~r~ 95 (103) T 1uep_A 55 PGDELVYVDGIPVAGKTHRYVIDLMHHAARNGQVNLTVRRK 95 (103) T ss_dssp TTCEEEEETTEECTTSCHHHHHHHHHHHHHHTEEEEEEEEE T ss_pred CCCEEEEECCEECCCCCHHHHHHHHHCCCCCCEEEEEEEEC T ss_conf 89999999999968997999999997399999899999758 No 93 >2koj_A Partitioning defective 3 homolog; PDZ domain, structural genomics, alternative splicing, cell cycle, cell division, cell junction, coiled coil; NMR {Mus musculus} PDB: 2ogp_A Probab=23.20 E-value=46 Score=15.22 Aligned_cols=42 Identities=17% Similarity=0.165 Sum_probs=34.3 Q ss_pred CCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEEEEEC Q ss_conf 897599992004573889999999997899789999998306 Q gi|254780309|r 16 AGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILTFSRSL 57 (59) Q Consensus 16 ~gk~vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~~lar~~ 57 (59) .|-.|+=|++.-..|.|..++.+.|++.+......+.+.|.. T Consensus 60 ~GD~Il~INg~~v~~~t~~e~~~ll~~~~~~~~v~l~v~r~~ 101 (111) T 2koj_A 60 AGDRLIEVNGVDLAGKSQEEVVSLLRSTKMEGTVSLLVFRQE 101 (111) T ss_dssp TTCEEEEETTEECTTSCHHHHHHHHHHCCCSSEEEEEEEECC T ss_pred CCCEEEEECCEECCCCCHHHHHHHHHHCCCCCEEEEEEECCC T ss_conf 999999999999889999999999981899998999998289 No 94 >1qys_A TOP7; alpha-beta, novel fold, de novo protein; 2.50A {Computationally designed sequence} SCOP: k.41.1.1 Probab=22.23 E-value=33 Score=16.01 Aligned_cols=40 Identities=25% Similarity=0.137 Sum_probs=28.3 Q ss_pred CCEEEEEEECCCCCHHHH----HHHHHHHHCCCCEEEEEEEEEEC Q ss_conf 975999920045738899----99999997899789999998306 Q gi|254780309|r 17 GLKILLIDDVYTTGATAK----CAAIALKKAGAMTVSILTFSRSL 57 (59) Q Consensus 17 gk~vliVDDiitTG~T~~----~~~~~L~~~ga~~V~~~~lar~~ 57 (59) |+.+ =+|=-++||.-+. +.-++++.+||+.|.+---|++- T Consensus 14 Gq~~-d~~~~VsT~~ELqr~L~EL~~~i~r~GAr~V~IsIsA~~~ 57 (106) T 1qys_A 14 GKNF-DYTYTVTTESELQKVLNELMDYIKKQGAKRVRISITARTK 57 (106) T ss_dssp SCEE-EEEEEESSSSHHHHHHHHHHHHHHHHCCSEEEEEEECSSH T ss_pred CCEE-EEEEEEECHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCH T ss_conf 8188-8999980548999999999999987176458999996667 No 95 >1ujv_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics, KIAA0705 protein; NMR {Homo sapiens} SCOP: b.36.1.1 Probab=21.60 E-value=49 Score=15.04 Aligned_cols=40 Identities=18% Similarity=0.092 Sum_probs=31.7 Q ss_pred CCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEEEE Q ss_conf 8975999920045738899999999978997899999983 Q gi|254780309|r 16 AGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILTFSR 55 (59) Q Consensus 16 ~gk~vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~~lar 55 (59) .|-.|+=|++.-..|.|..++.+.|++.....-..+.+.| T Consensus 50 ~GD~Il~VNg~~v~~~t~~evv~~lr~~~~g~~v~L~v~R 89 (96) T 1ujv_A 50 EGDLIVEINQQNVQNLSHTEVVDILKDCPIGSETSLIIHR 89 (96) T ss_dssp SSCEEEEETTEECSSCCHHHHHHHHHHSCTTSEEEEEEEC T ss_pred CCCEEEEECCEECCCCCHHHHHHHHHCCCCCCEEEEEEEE T ss_conf 9999999999996899899999999729999989999987 No 96 >1wfg_A Regulating synaptic membrane exocytosis protein 2; PDZ domain, RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2css_A 1zub_A Probab=21.19 E-value=50 Score=14.99 Aligned_cols=44 Identities=20% Similarity=0.096 Sum_probs=35.2 Q ss_pred C-CCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEEEEECC Q ss_conf 2-8975999920045738899999999978997899999983068 Q gi|254780309|r 15 V-AGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILTFSRSLK 58 (59) Q Consensus 15 i-~gk~vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~~lar~~~ 58 (59) | .|-.|+=|++.-..|.|..++.+.|++.......-+++.|..+ T Consensus 84 L~~GD~Il~VNg~~v~~~~~~~~~~~l~~~~~~~~v~L~v~R~~p 128 (131) T 1wfg_A 84 LRPGDEVLEWNGRLLQGATFEEVYNIILESKPEPQVELVVSRSGP 128 (131) T ss_dssp CCTTCEEEEETTEECTTCCHHHHHHHHHHTSSSSEEEEEEEEECS T ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHHHCCCCCEEEEEEEECCC T ss_conf 777999999999997899899999999828999989999982798 No 97 >3c97_A Signal transduction histidine kinase; structural genomics, signaling, PSI-2, protein structure initiative; 1.70A {Aspergillus oryzae RIB40} Probab=20.90 E-value=51 Score=14.95 Aligned_cols=31 Identities=26% Similarity=0.254 Sum_probs=20.5 Q ss_pred HCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCC Q ss_conf 0028975999920045738899999999978997 Q gi|254780309|r 13 KHVAGLKILLIDDVYTTGATAKCAAIALKKAGAM 46 (59) Q Consensus 13 ~~i~gk~vliVDDiitTG~T~~~~~~~L~~~ga~ 46 (59) +.+...+||||||--. ....+.+.|.+.|.. T Consensus 6 ~~~~pl~VLiVDD~~~---~r~~l~~~L~~~g~~ 36 (140) T 3c97_A 6 SQIMPLSVLIAEDNDI---CRLVAAKALEKCTND 36 (140) T ss_dssp ----CCEEEEECCCHH---HHHHHHHHHTTTCSE T ss_pred CCCCCCEEEEEECCHH---HHHHHHHHHHHCCCE T ss_conf 9999998999939899---999999999987999 No 98 >1vae_A Rhophilin 2, rhophilin, RHO GTPase binding protein 2; PDZ domain, intracellular signaling cascade, signal transduction; NMR {Mus musculus} SCOP: b.36.1.1 Probab=20.85 E-value=51 Score=14.95 Aligned_cols=39 Identities=26% Similarity=0.141 Sum_probs=33.7 Q ss_pred CCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEEE Q ss_conf 897599992004573889999999997899789999998 Q gi|254780309|r 16 AGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILTFS 54 (59) Q Consensus 16 ~gk~vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~~la 54 (59) .|-.|+=|++.-..|.|..++.+.|+..+...|.+.++. T Consensus 56 ~GD~Il~INg~~v~~~~~~ev~~~l~~~~~~~v~l~v~~ 94 (111) T 1vae_A 56 EGDYIVSIQGVDCKWLTVSEVMKLLKSFGGEEVEMKVVS 94 (111) T ss_dssp TTCEEEEETTEECSSCCHHHHHHHHHHTTTSEECEEEEC T ss_pred CCCEEEEECCEECCCCCHHHHHHHHHCCCCCEEEEEEEC T ss_conf 899999999999899989999999876899868999978 No 99 >2q9v_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; Cys Ser mutant, structural genomics consortium, SGC, transferase; 2.00A {Homo sapiens} Probab=20.79 E-value=39 Score=15.59 Aligned_cols=40 Identities=15% Similarity=0.209 Sum_probs=31.3 Q ss_pred CCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEEEE Q ss_conf 8975999920045738899999999978997899999983 Q gi|254780309|r 16 AGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILTFSR 55 (59) Q Consensus 16 ~gk~vliVDDiitTG~T~~~~~~~L~~~ga~~V~~~~lar 55 (59) .|-.++=|++.-.+|.|..++.+.|++.+....-.+++.| T Consensus 48 ~GD~Il~VNg~~v~~~t~~ev~~~l~~~~~~~~v~L~V~r 87 (90) T 2q9v_A 48 SGDELISVDGTPVIGKSHQLVVQLMQQAAKQGHVNLTVRQ 87 (90) T ss_dssp TTCEEEEETTEECTTSCHHHHHHHHHHHHHHTEEEEEEEE T ss_pred CCCEEEEECCEECCCCCHHHHHHHHHHCCCCCEEEEEEEE T ss_conf 9999999999998999899999999858999889999995 No 100 >2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein structure initiative; HET: MSE; 1.76A {Sinorhizobium medicae WSM419} Probab=20.60 E-value=52 Score=14.92 Aligned_cols=20 Identities=15% Similarity=0.054 Sum_probs=10.4 Q ss_pred EEEEEEECCC---CCHHHHHHHH Q ss_conf 5999920045---7388999999 Q gi|254780309|r 19 KILLIDDVYT---TGATAKCAAI 38 (59) Q Consensus 19 ~vliVDDiit---TG~T~~~~~~ 38 (59) .++|+|..+- +|..+....+ T Consensus 52 dlvi~D~~~p~~~~G~el~~~ir 74 (132) T 2rdm_A 52 DGVVTDIRFCQPPDGWQVARVAR 74 (132) T ss_dssp CEEEEESCCSSSSCHHHHHHHHH T ss_pred CEEEEEECCCCCCCHHHHHHHHH T ss_conf 79987300589999999999999 No 101 >2jvf_A De novo protein M7; tetrapeptide fragment-based protein design, artificial fold; NMR {Unidentified} SCOP: k.41.1.1 Probab=20.53 E-value=37 Score=15.73 Aligned_cols=37 Identities=30% Similarity=0.234 Sum_probs=27.0 Q ss_pred EEEEECCCCCHHHH----HHHHHHHHCCCCEEEEEEEEEEC Q ss_conf 99920045738899----99999997899789999998306 Q gi|254780309|r 21 LLIDDVYTTGATAK----CAAIALKKAGAMTVSILTFSRSL 57 (59) Q Consensus 21 liVDDiitTG~T~~----~~~~~L~~~ga~~V~~~~lar~~ 57 (59) +=+|=-++||.-+. +.-++++.+||+.|.+---|++- T Consensus 19 ~e~~~~VsT~~EL~r~L~EL~~~i~r~GAr~V~IsIsA~~~ 59 (96) T 2jvf_A 19 IEIDIRVSTGKELERALQELEKALARAGARNVQITISAEND 59 (96) T ss_dssp EEEEEECCSSSHHHHHHHHHHHHHHHHTCSEEEEEEECSSH T ss_pred EEEEEEEECHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCH T ss_conf 88999981438999999999999986176448999996566 No 102 >3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} Probab=20.24 E-value=34 Score=15.89 Aligned_cols=27 Identities=15% Similarity=0.148 Sum_probs=13.4 Q ss_pred CCCEEEEEEECCCCCHHHHHHHHHHHHCCC Q ss_conf 897599992004573889999999997899 Q gi|254780309|r 16 AGLKILLIDDVYTTGATAKCAAIALKKAGA 45 (59) Q Consensus 16 ~gk~vliVDDiitTG~T~~~~~~~L~~~ga 45 (59) ..|+||||||--.... .....|...|. T Consensus 2 s~~~vLiVDD~~~~~~---~l~~~L~~~G~ 28 (127) T 3i42_A 2 SLQQALIVEDYQAAAE---TFKELLEMLGF 28 (127) T ss_dssp CCEEEEEECSCHHHHH---HHHHHHHHTTE T ss_pred CCCEEEEEECCHHHHH---HHHHHHHHCCC T ss_conf 9888999957899999---99999998799 Done!