RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddA
21,609 sequences; 6,263,737 total letters
Searching..................................................done
Query= gi|254780309|ref|YP_003064722.1| comF family protein
[Candidatus Liberibacter asiaticus str. psy62]
(59 letters)
>gnl|CDD|31242 COG1040, ComFC, Predicted amidophosphoribosyltransferases [General
function prediction only].
Length = 225
Score = 54.6 bits (131), Expect = 5e-09
Identities = 24/57 (42%), Positives = 34/57 (59%), Gaps = 3/57 (5%)
Query: 2 RNAFNVPQYVSKHVAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILTFSRSLK 58
+ AF + +LL+DDVYTTGAT K AA L++AGA V +LT +R+ +
Sbjct: 172 KGAFRLK---KGIEEPKNVLLVDDVYTTGATLKEAAKLLREAGAKRVFVLTLARAPE 225
>gnl|CDD|143924 pfam00156, Pribosyltran, Phosphoribosyl transferase domain. This
family includes a range of diverse phosphoribosyl
transferase enzymes. This family includes: Adenine
phosphoribosyltransferase EC:2.4.2.7.
Hypoxanthine-guanine-xanthine phosphoribosyltransferase.
Hypoxanthine phosphoribosyltransferase EC:2.4.2.8.
Ribose-phosphate pyrophosphokinase i EC:2.7.6.1.
Amidophosphoribosyltransferase EC:2.4.2.14. Orotate
phosphoribosyltransferase EC:2.4.2.10. Uracil
phosphoribosyltransferase EC:2.4.2.9. Xanthine-guanine
phosphoribosyltransferase EC:2.4.2.22. In Arabidopsis,
At the very N-terminus of this domain is the
ATP-GTP-binding domain.
Length = 123
Score = 34.6 bits (80), Expect = 0.006
Identities = 16/38 (42%), Positives = 23/38 (60%)
Query: 15 VAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILT 52
+ G ++L++DDV TG T + A LKKAGA V +
Sbjct: 84 LKGKRVLIVDDVLDTGGTLRAAVELLKKAGAKVVGVAV 121
>gnl|CDD|30809 COG0461, PyrE, Orotate phosphoribosyltransferase [Nucleotide
transport and metabolism].
Length = 201
Score = 32.5 bits (74), Expect = 0.027
Identities = 15/39 (38%), Positives = 24/39 (61%)
Query: 15 VAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILTF 53
V G K+++++DV TTG + A AL++AGA V +
Sbjct: 110 VKGEKVVVVEDVITTGGSILEAVEALREAGAEVVGVAVI 148
>gnl|CDD|32109 COG1926, COG1926, Predicted phosphoribosyltransferases [General
function prediction only].
Length = 220
Score = 32.1 bits (73), Expect = 0.029
Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Query: 1 MRNAFNVPQYVSKHVAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILT 52
R A+ + V + G ++L+DD TGAT K A AL+ G + I
Sbjct: 109 RREAYRGGRPV-PSLKGRTVILVDDGIATGATMKAAVRALRAKGPKEIVIAV 159
>gnl|CDD|30849 COG0503, Apt, Adenine/guanine phosphoribosyltransferases and
related PRPP-binding proteins [Nucleotide transport and
metabolism].
Length = 179
Score = 32.2 bits (73), Expect = 0.033
Identities = 13/35 (37%), Positives = 20/35 (57%)
Query: 16 AGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSI 50
G ++L++DD+ TG TA L++AGA V
Sbjct: 115 PGDRVLIVDDLLATGGTALALIELLEQAGAEVVGA 149
>gnl|CDD|30810 COG0462, PrsA, Phosphoribosylpyrophosphate synthetase [Nucleotide
transport and metabolism / Amino acid transport and
metabolism].
Length = 314
Score = 30.9 bits (70), Expect = 0.070
Identities = 15/38 (39%), Positives = 21/38 (55%)
Query: 15 VAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILT 52
V G ++++DD+ TG T AA ALK+ GA V
Sbjct: 212 VEGKDVVIVDDIIDTGGTIAKAAKALKERGAKKVYAAA 249
>gnl|CDD|31197 COG0856, COG0856, Orotate phosphoribosyltransferase homologs
[Nucleotide transport and metabolism].
Length = 203
Score = 29.5 bits (66), Expect = 0.22
Identities = 14/34 (41%), Positives = 20/34 (58%)
Query: 15 VAGLKILLIDDVYTTGATAKCAAIALKKAGAMTV 48
V G + +++DDV TTG+T K LK+ G V
Sbjct: 139 VEGKRCVIVDDVITTGSTIKETIEQLKEEGGKPV 172
>gnl|CDD|30979 COG0634, Hpt, Hypoxanthine-guanine phosphoribosyltransferase
[Nucleotide transport and metabolism].
Length = 178
Score = 28.9 bits (65), Expect = 0.31
Identities = 12/39 (30%), Positives = 21/39 (53%)
Query: 15 VAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILTF 53
+ G +L+++D+ +G T LK+ GA +V I T
Sbjct: 91 IKGRDVLIVEDIIDSGLTLSKVRDLLKERGAKSVRIATL 129
>gnl|CDD|30383 COG0034, PurF, Glutamine phosphoribosylpyrophosphate
amidotransferase [Nucleotide transport and metabolism].
Length = 470
Score = 28.6 bits (64), Expect = 0.43
Identities = 12/34 (35%), Positives = 20/34 (58%)
Query: 15 VAGLKILLIDDVYTTGATAKCAAIALKKAGAMTV 48
V G +++L+DD G T++ L++AGA V
Sbjct: 346 VKGKRVVLVDDSIVRGTTSRRIVQMLREAGAKEV 379
>gnl|CDD|36924 KOG1712, KOG1712, KOG1712, Adenine phosphoribosyl transferases
[Nucleotide transport and metabolism].
Length = 183
Score = 28.3 bits (63), Expect = 0.50
Identities = 11/33 (33%), Positives = 19/33 (57%)
Query: 16 AGLKILLIDDVYTTGATAKCAAIALKKAGAMTV 48
G +++++DD+ TG T A L++ GA V
Sbjct: 121 PGQRVVVVDDLLATGGTLAAATELLERVGAEVV 153
>gnl|CDD|35792 KOG0572, KOG0572, KOG0572, Glutamine phosphoribosylpyrophosphate
amidotransferase [Nucleotide transport and metabolism].
Length = 474
Score = 27.2 bits (60), Expect = 1.0
Identities = 12/40 (30%), Positives = 22/40 (55%)
Query: 11 VSKHVAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSI 50
+ ++ G +++L+DD G T+ L++AGA V I
Sbjct: 350 LRQNFEGKRVVLVDDSIVRGTTSSPIVKMLREAGAKEVHI 389
>gnl|CDD|32417 COG2236, COG2236, Predicted phosphoribosyltransferases [General
function prediction only].
Length = 192
Score = 26.1 bits (57), Expect = 2.1
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 15 VAGLKILLIDDVYTTGATAKCAAIALKK 42
++G K+L++DD+ TG T + A LKK
Sbjct: 85 LSGKKVLIVDDIVDTGETLELALEELKK 112
>gnl|CDD|32248 COG2065, PyrR, Pyrimidine operon attenuation protein/uracil
phosphoribosyltransferase [Nucleotide transport and
metabolism].
Length = 179
Score = 25.6 bits (56), Expect = 2.8
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 15 VAGLKILLIDDVYTTGATAKCAAIALKKAG 44
+ G +++L+DDV TG T + A AL G
Sbjct: 94 ITGKRVILVDDVLYTGRTIRAALDALVDYG 123
>gnl|CDD|100021 cd02201, FtsZ_type1, FtsZ is a GTPase that is similar to the
eukaryotic tubulins and is essential for cell division
in prokaryotes. FtsZ is capable of polymerizing in a
GTP-driven process into structures similar to those
formed by tubulin. FtsZ forms a ring-shaped septum at
the site of bacterial cell division, which is required
for constriction of cell membrane and cell envelope to
yield two daughter cells..
Length = 304
Score = 25.5 bits (57), Expect = 3.4
Identities = 12/24 (50%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
Query: 29 TGATAKCAAIALKKAGAMTVSILT 52
TGA A IA K+ GA+TV+++T
Sbjct: 100 TGAAPVIAKIA-KEMGALTVAVVT 122
>gnl|CDD|132998 cd00897, UGPase_euk, Eukaryotic UGPase catalyses the synthesis of
UDP-Glucose. UGPase (UDP-Glucose Pyrophosphorylase)
catalyzes the reversible production of UDP-Glucose and
pyrophosphate (PPi) from Glucose-1-phosphate and UTP.
UDP-glucose plays pivotal roles in galactose
utilization, in glycogen synthesis, and in the
synthesis of the carbohydrate moieties of glycolipids,
glycoproteins, and proteoglycans. UGPase is found in
both prokaryotes and eukaryotes. Interestingly, while
the prokaryotic and eukaryotic forms of UGPase catalyze
the same reaction, they share low sequence similarity.
This family consists of mainly eukaryotic
UTP-glucose-1-phosphate uridylyltransferases.
Length = 300
Score = 24.5 bits (54), Expect = 7.3
Identities = 12/45 (26%), Positives = 21/45 (46%), Gaps = 4/45 (8%)
Query: 12 SKHVAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILTFSRS 56
+ + ++L++ T T K LKK + V I TF++S
Sbjct: 47 KTYGVDVPLVLMNSFNTDEDTKK----ILKKYAGVNVDIHTFNQS 87
>gnl|CDD|100095 cd05802, GlmM, GlmM is a bacterial phosphoglucosamine mutase (PNGM)
that belongs to the alpha-D-phosphohexomutase
superfamily. It is required for the interconversion of
glucosamine-6-phosphate and glucosamine-1-phosphate in
the biosynthetic pathway of UDP-N-acetylglucosamine, an
essential precursor to components of the cell envelope.
In order to be active, GlmM must be phosphorylated,
which can occur via autophosphorylation or by the
Ser/Thr kinase StkP. GlmM functions in a classical
ping-pong bi-bi mechanism with
glucosamine-1,6-diphosphate as an intermediate. Other
members of the alpha-D-phosphohexomutase superfamily
include phosphoglucosamine mutase (PNGM),
phosphoacetylglucosamine mutase (PAGM), the bacterial
phosphomannomutase ManB, and the bifunctional
phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of
these enzymes has four domains with a centrally located
active site formed by four loops, one from each domain.
All four domains are included in this alignment model..
Length = 434
Score = 24.4 bits (54), Expect = 7.3
Identities = 13/34 (38%), Positives = 17/34 (50%), Gaps = 3/34 (8%)
Query: 17 GLKILLIDDVYTTGATAKCAAIALKKAGAMTVSI 50
GLKI+L D GA K A ++ GA + I
Sbjct: 169 GLKIVL--DC-ANGAAYKVAPEVFRELGAEVIVI 199
Database: CddA
Posted date: Feb 4, 2011 9:38 PM
Number of letters in database: 6,263,737
Number of sequences in database: 21,609
Lambda K H
0.322 0.131 0.361
Gapped
Lambda K H
0.267 0.0849 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 598,832
Number of extensions: 21249
Number of successful extensions: 84
Number of sequences better than 10.0: 1
Number of HSP's gapped: 84
Number of HSP's successfully gapped: 23
Length of query: 59
Length of database: 6,263,737
Length adjustment: 31
Effective length of query: 28
Effective length of database: 5,593,858
Effective search space: 156628024
Effective search space used: 156628024
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 51 (23.2 bits)