RPS-BLAST 2.2.22 [Sep-27-2009]
Database: pdb70
24,244 sequences; 5,693,230 total letters
Searching..................................................done
Query= gi|254780309|ref|YP_003064722.1| comF family protein
[Candidatus Liberibacter asiaticus str. psy62]
(59 letters)
>1vch_A Phosphoribosyltransferase-related protein; structural genomics,
riken structural genomics/proteomics initiative, RSGI;
1.94A {Thermus thermophilus} SCOP: c.61.1.1
Length = 175
Score = 38.9 bits (90), Expect = 3e-04
Identities = 9/39 (23%), Positives = 19/39 (48%)
Query: 15 VAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILTF 53
+ +++L+ DV +G T + + +AG V+ L
Sbjct: 118 LLNQRVVLVSDVVASGETMRAMEKMVLRAGGHVVARLAV 156
>1o57_A PUR operon repressor; purine operon repressor, helix-turn-helix
domain, phosphoribosyltranseferases, domain
recombination, DNA binding; HET: EPE P6G 2PE PG4 1PE;
2.20A {Bacillus subtilis} SCOP: a.4.5.40 c.61.1.1 PDB:
1p4a_A*
Length = 291
Score = 36.0 bits (83), Expect = 0.002
Identities = 10/35 (28%), Positives = 13/35 (37%)
Query: 17 GLKILLIDDVYTTGATAKCAAIALKKAGAMTVSIL 51
G +L+IDD G T L + A I
Sbjct: 196 GSNVLIIDDFMKAGGTINGMINLLDEFNANVAGIG 230
>2wns_A Orotate phosphoribosyltransferase; alternative splicing,
multifunctional enzyme, lyase, polymorphism,
decarboxylase, phosphoprotein; HET: OMP; 1.90A {Homo
sapiens}
Length = 205
Score = 36.0 bits (83), Expect = 0.002
Identities = 11/45 (24%), Positives = 18/45 (40%), Gaps = 1/45 (2%)
Query: 15 VAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILT-FSRSLK 58
G L+I+DV T+G++ L+K G + R
Sbjct: 109 NPGETCLIIEDVVTSGSSVLETVEVLQKEGLKVTDAIVLLDREQG 153
>1qb7_A APRT, adenine phosphoribosyltransferase; dinucleotide binding fold;
HET: ADE CIT; 1.50A {Leishmania donovani} SCOP: c.61.1.1
PDB: 1qb8_A* 1qcc_A* 1qcd_A 1mzv_A*
Length = 236
Score = 35.8 bits (82), Expect = 0.003
Identities = 12/37 (32%), Positives = 22/37 (59%)
Query: 17 GLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILTF 53
G +++LIDDV TG TA ++ + A+ V +++
Sbjct: 138 GSRVVLIDDVLATGGTALSGLQLVEASDAVVVEMVSI 174
>1l1q_A Adenine phosphoribosyltransferase; aprtase, giardia lamblia, purine
metabolism, catalytic loop; HET: 9DA; 1.85A {Giardia
intestinalis} SCOP: c.61.1.1 PDB: 1l1r_A*
Length = 186
Score = 34.9 bits (80), Expect = 0.004
Identities = 11/29 (37%), Positives = 13/29 (44%)
Query: 17 GLKILLIDDVYTTGATAKCAAIALKKAGA 45
+LL DDV TG T A + AG
Sbjct: 117 HDVVLLHDDVLATGGTLLAAIELCETAGV 145
>1g2q_A Adenine phosphoribosyltransferase 1; dimer, single domain,
catalytic loop; 1.50A {Saccharomyces cerevisiae} SCOP:
c.61.1.1 PDB: 1g2p_A
Length = 187
Score = 34.6 bits (79), Expect = 0.005
Identities = 9/38 (23%), Positives = 19/38 (50%)
Query: 14 HVAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSIL 51
AG ++++DD+ TG +A A +++ A +
Sbjct: 119 IPAGSNVIIVDDIIATGGSAAAAGELVEQLEANLLEYN 156
>1zn8_A APRT, adenine phosphoribosyltransferase; glycosyltransferase,
polymorphism, purine salvage; HET: AMP; 1.76A {Homo
sapiens} SCOP: c.61.1.1 PDB: 1ore_A* 1zn7_A* 1zn9_A*
Length = 180
Score = 34.7 bits (79), Expect = 0.005
Identities = 9/40 (22%), Positives = 19/40 (47%)
Query: 14 HVAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILTF 53
G +++++DD+ TG T A L + A + ++
Sbjct: 117 LEPGQRVVVVDDLLATGGTMNAACELLGRLQAEVLECVSL 156
>2jky_A Hypoxanthine-guanine phosphoribosyltransferase; nucleus, cytoplasm,
magnesium, GMP complex, FLIP peptide-plane,
glycosyltransferase; HET: 5GP; 2.3A {Saccharomyces
cerevisiae} PDB: 2jkz_A*
Length = 213
Score = 34.1 bits (77), Expect = 0.007
Identities = 10/34 (29%), Positives = 16/34 (47%)
Query: 15 VAGLKILLIDDVYTTGATAKCAAIALKKAGAMTV 48
+ G +L++D+V T T A L+K A
Sbjct: 100 LVGKNVLIVDEVDDTRTTLHYALSELEKDAAEQA 133
>1wd5_A Hypothetical protein TT1426; structural genomics, riken structural
genomics/proteomics initiative, RSGI, unknown function;
HET: MES; 2.00A {Thermus thermophilus} SCOP: c.61.1.1
Length = 208
Score = 32.8 bits (74), Expect = 0.019
Identities = 10/44 (22%), Positives = 17/44 (38%)
Query: 2 RNAFNVPQYVSKHVAGLKILLIDDVYTTGATAKCAAIALKKAGA 45
R G ++L+DD TGA+ + A + + G
Sbjct: 105 RAERYRRVRPKAARKGRDVVLVDDGVATGASMEAALSVVFQEGP 148
>2dy0_A APRT, adenine phosphoribosyltransferase; structural genomics,
NPPSFA, national project on protein structural and
functional analyses; 1.25A {Escherichia coli K12}
Length = 190
Score = 32.3 bits (73), Expect = 0.025
Identities = 9/35 (25%), Positives = 17/35 (48%)
Query: 17 GLKILLIDDVYTTGATAKCAAIALKKAGAMTVSIL 51
G K+L++DD+ TG T + +++ G
Sbjct: 126 GDKVLVVDDLLATGGTIEATVKLIRRLGGEVADAA 160
>3dez_A OPRT, oprtase, orotate phosphoribosyltransferase;
glycosyltransferase, magnesium, pyrimidine biosynthesis;
2.40A {Streptococcus mutans}
Length = 243
Score = 31.9 bits (72), Expect = 0.032
Identities = 12/44 (27%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 17 GLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILT-FSRSLKD 59
G K+++I+D+ +TG + A A ++ GA + ++ F+ L
Sbjct: 149 GQKMVIIEDLISTGGSVLDAVAAAQREGADVLGVVAIFTYELPK 192
>3m3h_A OPRT, oprtase, orotate phosphoribosyltransferase; pyrimidine
ribonucleotide biosynthesis, structural genomics,
infectious diseases; 1.75A {Bacillus anthracis} PDB:
3osc_A*
Length = 234
Score = 31.5 bits (71), Expect = 0.049
Identities = 13/44 (29%), Positives = 26/44 (59%)
Query: 9 QYVSKHVAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILT 52
Q K G K+++++D+ +TG +A AL++AG + I++
Sbjct: 129 QIEGKAEKGQKVVVVEDLISTGGSAITCVEALREAGCEVLGIVS 172
>3dah_A Ribose-phosphate pyrophosphokinase; seattle structural genomics
center for infectious disease, ssgcid, cytoplasm,
magnesium; HET: AMP; 2.30A {Burkholderia pseudomallei
1710B}
Length = 319
Score = 31.0 bits (70), Expect = 0.064
Identities = 13/37 (35%), Positives = 18/37 (48%)
Query: 14 HVAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSI 50
V G +++DD+ T T AA LK+ GA V
Sbjct: 213 EVEGRTCVIMDDMVDTAGTLCKAAQVLKERGAKQVFA 249
>1ecf_A Glutamine phosphoribosylpyrophosphate amidotransferase; purine
biosynthesis, glycosyltransferase, glutamine
amidotransferase; HET: PIN; 2.00A {Escherichia coli}
SCOP: c.61.1.1 d.153.1.1 PDB: 1ecb_A* 1ecc_A* 1ecg_A*
1ecj_A*
Length = 504
Score = 30.4 bits (68), Expect = 0.10
Identities = 10/40 (25%), Positives = 17/40 (42%)
Query: 11 VSKHVAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSI 50
+LL+DD G T++ ++AGA V +
Sbjct: 353 NRAEFRDKNVLLVDDSIVRGTTSEQIIEMAREAGAKKVYL 392
>3ohp_A Hypoxanthine phosphoribosyltransferase; structural genomics, PSI-2,
protein structure initiative, NE SGX research center for
structural genomics; 2.04A {Vibrio cholerae} PDB:
1g9s_A* 1g9t_A* 1grv_A 1j7j_A
Length = 177
Score = 28.7 bits (64), Expect = 0.35
Identities = 10/38 (26%), Positives = 16/38 (42%)
Query: 16 AGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILTF 53
G +LL++D+ TG T L ++ I T
Sbjct: 90 KGKDVLLVEDIIDTGNTLNKVKEILALREPKSIRICTL 127
>1nul_A XPRT, xanthine-guanine phosphoribosyltransferase; purine salvage
enzyme; 1.80A {Escherichia coli} SCOP: c.61.1.1 PDB:
1a96_A* 1a95_A 1a98_A 1a97_A*
Length = 152
Score = 28.3 bits (63), Expect = 0.39
Identities = 14/54 (25%), Positives = 20/54 (37%)
Query: 6 NVPQYVSKHVAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILTFSRSLKD 59
+ G ++IDD+ TG TA KA +T+ R L D
Sbjct: 70 ELKVLKRAEGDGEGFIVIDDLVDTGGTAVAIREMYPKAHFVTIFAKPAGRPLVD 123
>3dmp_A Uracil phosphoribosyltransferase; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid; 2.60A {Burkholderia pseudomallei}
Length = 217
Score = 28.2 bits (63), Expect = 0.46
Identities = 9/37 (24%), Positives = 16/37 (43%)
Query: 15 VAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSIL 51
+ +L D + TG +A A LK+ G ++
Sbjct: 127 LEDRIFILCDPMVATGYSAAHAIDVLKRRGVPGERLM 163
>1lh0_A OMP synthase; loop closure, monomer closure, orotate
phosphoribosyltransferase; HET: ORO PRP; 2.00A
{Salmonella typhimurium} SCOP: c.61.1.1 PDB: 1opr_A*
1sto_A* 1oro_A
Length = 213
Score = 27.7 bits (61), Expect = 0.60
Identities = 9/35 (25%), Positives = 18/35 (51%)
Query: 19 KILLIDDVYTTGATAKCAAIALKKAGAMTVSILTF 53
+++L+DDV T G + + ++ GA +L
Sbjct: 119 RVMLVDDVITAGTAIRESMEIIQAHGATLAGVLIS 153
>3mjd_A Orotate phosphoribosyltransferase; IDP02311, csgid, structural
genomics, center for structural genomics of infectious
diseases; 1.90A {Francisella tularensis}
Length = 232
Score = 27.7 bits (61), Expect = 0.66
Identities = 12/34 (35%), Positives = 16/34 (47%)
Query: 19 KILLIDDVYTTGATAKCAAIALKKAGAMTVSILT 52
K+LLIDDV T G + LK A ++
Sbjct: 138 KVLLIDDVMTAGTAFYESYNKLKIINAKIAGVVL 171
>1y0b_A Xanthine phosphoribosyltransferase; purine metabolism, structural
genomics, PSI, protein structure initative; HET: G4P;
1.80A {Bacillus subtilis} SCOP: c.61.1.1 PDB: 2fxv_A*
Length = 197
Score = 27.7 bits (61), Expect = 0.69
Identities = 11/37 (29%), Positives = 15/37 (40%)
Query: 17 GLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILTF 53
+L+IDD G A +K+AGA I
Sbjct: 120 QDHVLIIDDFLANGQAAHGLVSIVKQAGASIAGIGIV 156
>3n2l_A OPRT, oprtase, orotate phosphoribosyltransferase; pyrimidine
ribonucleotide biosynthesis, infectious diseases; 2.10A
{Vibrio cholerae}
Length = 238
Score = 26.9 bits (59), Expect = 1.0
Identities = 8/35 (22%), Positives = 17/35 (48%)
Query: 19 KILLIDDVYTTGATAKCAAIALKKAGAMTVSILTF 53
+++L+DDV T G + + ++ A +L
Sbjct: 144 RVMLVDDVITAGTAIRESMELIQANKADLAGVLVA 178
>1w30_A PYRR bifunctional protein; transferase, glycosyltransferase, PSI,
protein structure initiative, TB structural genomics
consortium, TB; 1.9A {Mycobacterium tuberculosis} SCOP:
c.61.1.1
Length = 201
Score = 25.8 bits (56), Expect = 2.7
Identities = 9/31 (29%), Positives = 17/31 (54%)
Query: 15 VAGLKILLIDDVYTTGATAKCAAIALKKAGA 45
+ ++L+DDV +G + + A AL+ G
Sbjct: 110 IDDALVILVDDVLYSGRSVRSALDALRDVGR 140
>1a3c_A PYRR, pyrimidine operon regulatory protein PYRR; transcription
regulation, attenuation protein, RNA-binding protein,
pyrimidine biosynthesis; 1.60A {Bacillus subtilis} SCOP:
c.61.1.1 PDB: 1a4x_A 2igb_A* 1xz8_A* 1non_A 1xzn_A*
Length = 181
Score = 25.8 bits (56), Expect = 2.8
Identities = 11/41 (26%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Query: 14 HVAGLKILLIDDVYTTGATAKCAAIALKKAG-AMTVSILTF 53
+ K++L+DDV TG T + AL G ++ +
Sbjct: 95 DITDQKVILVDDVLYTGRTVRAGMDALVDVGRPSSIQLAVL 135
>1v9s_A Uracil phosphoribosyltransferase; pyrimidine salvage,
oligomerization, structural genomics; 2.10A {Thermus
thermophilus HB8} SCOP: c.61.1.1
Length = 208
Score = 25.3 bits (55), Expect = 3.4
Identities = 14/58 (24%), Positives = 25/58 (43%), Gaps = 2/58 (3%)
Query: 1 MRNAFNVPQYV--SKHVAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILTFSRS 56
+ V Y+ +A + L+D + TG +A A LK+ GA V ++ +
Sbjct: 105 PESLNPVQYYIKLPPDIAERRAFLLDPMLATGGSASLALSLLKERGATGVKLMAILAA 162
>1ao0_A Glutamine phosphoribosylpyrophosphate amidotransferase; glutamine
amidotransferase, prtase, purine biosynthesis,
phosphoribosyltransferase; HET: 5GP ADP; 2.80A {Bacillus
subtilis} SCOP: c.61.1.1 d.153.1.1 PDB: 1gph_1*
Length = 459
Score = 24.0 bits (51), Expect = 8.9
Identities = 12/42 (28%), Positives = 22/42 (52%)
Query: 9 QYVSKHVAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSI 50
V V G +++++DD G T++ L++AGA V +
Sbjct: 330 SAVRGVVEGKRVVMVDDSIVRGTTSRRIVTMLREAGATEVHV 371
Database: pdb70
Posted date: Jan 26, 2011 11:21 AM
Number of letters in database: 5,693,230
Number of sequences in database: 24,244
Lambda K H
0.322 0.131 0.361
Gapped
Lambda K H
0.267 0.0613 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 442,647
Number of extensions: 14297
Number of successful extensions: 115
Number of sequences better than 10.0: 1
Number of HSP's gapped: 115
Number of HSP's successfully gapped: 35
Length of query: 59
Length of database: 5,693,230
Length adjustment: 30
Effective length of query: 29
Effective length of database: 4,965,910
Effective search space: 144011390
Effective search space used: 144011390
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 50 (23.3 bits)