RPS-BLAST 2.2.22 [Sep-27-2009] Database: scop70_1_75 13,730 sequences; 2,407,596 total letters Searching..................................................done Query= gi|254780309|ref|YP_003064722.1| comF family protein [Candidatus Liberibacter asiaticus str. psy62] (59 letters) >d1vcha1 c.61.1.1 (A:2-175) Putative phosphoribosyltransferase TTHA1613 {Thermus thermophilus [TaxId: 274]} Length = 174 Score = 36.6 bits (84), Expect = 6e-04 Identities = 9/38 (23%), Positives = 19/38 (50%) Query: 15 VAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILT 52 + +++L+ DV +G T + + +AG V+ L Sbjct: 117 LLNQRVVLVSDVVASGETMRAMEKMVLRAGGHVVARLA 154 >d1g2qa_ c.61.1.1 (A:) Adenine PRTase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 178 Score = 33.5 bits (76), Expect = 0.005 Identities = 9/43 (20%), Positives = 20/43 (46%) Query: 9 QYVSKHVAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSIL 51 + AG ++++DD+ TG +A A +++ A + Sbjct: 114 IQKNAIPAGSNVIIVDDIIATGGSAAAAGELVEQLEANLLEYN 156 >d1zn7a1 c.61.1.1 (A:3-180) Adenine PRTase {Human (Homo sapiens) [TaxId: 9606]} Length = 178 Score = 33.1 bits (75), Expect = 0.006 Identities = 9/37 (24%), Positives = 19/37 (51%) Query: 17 GLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILTF 53 G +++++DD+ TG T A L + A + ++ Sbjct: 118 GQRVVVVDDLLATGGTMNAACELLGRLQAEVLECVSL 154 >d1qb7a_ c.61.1.1 (A:) Adenine PRTase {Leishmania donovani [TaxId: 5661]} Length = 236 Score = 32.8 bits (74), Expect = 0.008 Identities = 12/37 (32%), Positives = 22/37 (59%) Query: 17 GLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILTF 53 G +++LIDDV TG TA ++ + A+ V +++ Sbjct: 138 GSRVVLIDDVLATGGTALSGLQLVEASDAVVVEMVSI 174 >d1y0ba1 c.61.1.1 (A:1-191) Xanthine phosphoribosyltransferase {Bacillus subtilis [TaxId: 1423]} Length = 191 Score = 31.5 bits (71), Expect = 0.018 Identities = 11/37 (29%), Positives = 15/37 (40%) Query: 17 GLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILTF 53 +L+IDD G A +K+AGA I Sbjct: 117 QDHVLIIDDFLANGQAAHGLVSIVKQAGASIAGIGIV 153 >d1l1qa_ c.61.1.1 (A:) Adenine PRTase {Giardia lamblia [TaxId: 5741]} Length = 181 Score = 30.4 bits (68), Expect = 0.042 Identities = 11/29 (37%), Positives = 13/29 (44%) Query: 17 GLKILLIDDVYTTGATAKCAAIALKKAGA 45 +LL DDV TG T A + AG Sbjct: 116 HDVVLLHDDVLATGGTLLAAIELCETAGV 144 >d1wd5a_ c.61.1.1 (A:) Putative phosphoribosyltransferase TT1426 (TTHA1462) {Thermus thermophilus [TaxId: 274]} Length = 208 Score = 29.7 bits (66), Expect = 0.078 Identities = 9/31 (29%), Positives = 16/31 (51%) Query: 15 VAGLKILLIDDVYTTGATAKCAAIALKKAGA 45 G ++L+DD TGA+ + A + + G Sbjct: 118 RKGRDVVLVDDGVATGASMEAALSVVFQEGP 148 >d1o57a2 c.61.1.1 (A:75-276) Pur operon repressor (PurR), C-terminal domain {Bacillus subtilis [TaxId: 1423]} Length = 202 Score = 28.9 bits (64), Expect = 0.11 Identities = 10/35 (28%), Positives = 13/35 (37%) Query: 17 GLKILLIDDVYTTGATAKCAAIALKKAGAMTVSIL 51 G +L+IDD G T L + A I Sbjct: 122 GSNVLIIDDFMKAGGTINGMINLLDEFNANVAGIG 156 >d1nula_ c.61.1.1 (A:) Xanthine-guanine PRTase (XPRTase) {Escherichia coli [TaxId: 562]} Length = 150 Score = 27.7 bits (61), Expect = 0.27 Identities = 14/54 (25%), Positives = 20/54 (37%) Query: 6 NVPQYVSKHVAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILTFSRSLKD 59 + G ++IDD+ TG TA KA +T+ R L D Sbjct: 68 ELKVLKRAEGDGEGFIVIDDLVDTGGTAVAIREMYPKAHFVTIFAKPAGRPLVD 121 >d1v9sa1 c.61.1.1 (A:1-208) Uracil PRTase, Upp {Thermus thermophilus [TaxId: 274]} Length = 208 Score = 25.7 bits (56), Expect = 1.0 Identities = 12/45 (26%), Positives = 21/45 (46%) Query: 12 SKHVAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILTFSRS 56 +A + L+D + TG +A A LK+ GA V ++ + Sbjct: 118 PPDIAERRAFLLDPMLATGGSASLALSLLKERGATGVKLMAILAA 162 >d1w30a_ c.61.1.1 (A:) Pyrimidine operon regulator PyrR {Mycobacterium tuberculosis [TaxId: 1773]} Length = 182 Score = 25.4 bits (55), Expect = 1.3 Identities = 9/32 (28%), Positives = 17/32 (53%) Query: 14 HVAGLKILLIDDVYTTGATAKCAAIALKKAGA 45 + ++L+DDV +G + + A AL+ G Sbjct: 98 GIDDALVILVDDVLYSGRSVRSALDALRDVGR 129 >d1a3ca_ c.61.1.1 (A:) Pyrimidine operon regulator PyrR {Bacillus subtilis [TaxId: 1423]} Length = 178 Score = 25.4 bits (55), Expect = 1.5 Identities = 12/39 (30%), Positives = 18/39 (46%) Query: 14 HVAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILT 52 + K++L+DDV TG T + AL G + L Sbjct: 93 DITDQKVILVDDVLYTGRTVRAGMDALVDVGRPSSIQLA 131 >d1i5ea_ c.61.1.1 (A:) Uracil PRTase, Upp {Bacillus caldolyticus [TaxId: 1394]} Length = 208 Score = 24.1 bits (52), Expect = 3.5 Identities = 12/41 (29%), Positives = 20/41 (48%) Query: 13 KHVAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILTF 53 V +++D + TG +A A ALKK GA ++ + Sbjct: 119 SDVEERDFIIVDPMLATGGSAVAAIDALKKRGAKSIKFMCL 159 >d1bd3a_ c.61.1.1 (A:) Uracil PRTase, Upp {Toxoplasma gondii [TaxId: 5811]} Length = 224 Score = 23.8 bits (51), Expect = 4.3 Identities = 7/42 (16%), Positives = 16/42 (38%) Query: 13 KHVAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILTFS 54 + ++L+D + T + A L + G I+ + Sbjct: 133 ADIRERWVMLLDPMCATAGSVCKAIEVLLRLGVKEERIIFVN 174 >d1dcfa_ c.23.1.2 (A:) Receiver domain of the ethylene receptor {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 134 Score = 23.0 bits (49), Expect = 7.0 Identities = 5/10 (50%), Positives = 9/10 (90%) Query: 16 AGLKILLIDD 25 GLK+L++D+ Sbjct: 6 TGLKVLVMDE 15 >d1dkua2 c.61.1.2 (A:167-315) Phosphoribosylpyrophosphate synthetase {Bacillus subtilis [TaxId: 1423]} Length = 149 Score = 23.0 bits (49), Expect = 7.6 Identities = 14/40 (35%), Positives = 18/40 (45%) Query: 15 VAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILTFS 54 + G +LIDD+ T T AA AL + GA V Sbjct: 48 IEGKTAILIDDIIDTAGTITLAANALVENGAKEVYACCTH 87 >d1ufra_ c.61.1.1 (A:) Pyrimidine operon regulator PyrR {Thermus thermophilus [TaxId: 274]} Length = 178 Score = 22.7 bits (48), Expect = 7.8 Identities = 14/37 (37%), Positives = 19/37 (51%) Query: 8 PQYVSKHVAGLKILLIDDVYTTGATAKCAAIALKKAG 44 + + G I+L+DDV TG TA+ A AL G Sbjct: 87 ETRIPFDLTGKAIVLVDDVLYTGRTARAALDALIDLG 123 Database: scop70_1_75 Posted date: Mar 27, 2010 6:21 PM Number of letters in database: 2,407,596 Number of sequences in database: 13,730 Lambda K H 0.322 0.131 0.361 Gapped Lambda K H 0.267 0.0543 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 13730 Number of Hits to DB: 192,500 Number of extensions: 6159 Number of successful extensions: 56 Number of sequences better than 10.0: 1 Number of HSP's gapped: 56 Number of HSP's successfully gapped: 20 Length of query: 59 Length of database: 2,407,596 Length adjustment: 29 Effective length of query: 30 Effective length of database: 2,009,426 Effective search space: 60282780 Effective search space used: 60282780 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 47 (22.3 bits)