RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254780309|ref|YP_003064722.1| comF family protein
[Candidatus Liberibacter asiaticus str. psy62]
         (59 letters)



>d1vcha1 c.61.1.1 (A:2-175) Putative phosphoribosyltransferase
           TTHA1613 {Thermus thermophilus [TaxId: 274]}
          Length = 174

 Score = 36.6 bits (84), Expect = 6e-04
 Identities = 9/38 (23%), Positives = 19/38 (50%)

Query: 15  VAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILT 52
           +   +++L+ DV  +G T +     + +AG   V+ L 
Sbjct: 117 LLNQRVVLVSDVVASGETMRAMEKMVLRAGGHVVARLA 154


>d1g2qa_ c.61.1.1 (A:) Adenine PRTase {Baker's yeast (Saccharomyces
           cerevisiae) [TaxId: 4932]}
          Length = 178

 Score = 33.5 bits (76), Expect = 0.005
 Identities = 9/43 (20%), Positives = 20/43 (46%)

Query: 9   QYVSKHVAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSIL 51
              +   AG  ++++DD+  TG +A  A   +++  A  +   
Sbjct: 114 IQKNAIPAGSNVIIVDDIIATGGSAAAAGELVEQLEANLLEYN 156


>d1zn7a1 c.61.1.1 (A:3-180) Adenine PRTase {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 178

 Score = 33.1 bits (75), Expect = 0.006
 Identities = 9/37 (24%), Positives = 19/37 (51%)

Query: 17  GLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILTF 53
           G +++++DD+  TG T   A   L +  A  +  ++ 
Sbjct: 118 GQRVVVVDDLLATGGTMNAACELLGRLQAEVLECVSL 154


>d1qb7a_ c.61.1.1 (A:) Adenine PRTase {Leishmania donovani [TaxId:
           5661]}
          Length = 236

 Score = 32.8 bits (74), Expect = 0.008
 Identities = 12/37 (32%), Positives = 22/37 (59%)

Query: 17  GLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILTF 53
           G +++LIDDV  TG TA      ++ + A+ V +++ 
Sbjct: 138 GSRVVLIDDVLATGGTALSGLQLVEASDAVVVEMVSI 174


>d1y0ba1 c.61.1.1 (A:1-191) Xanthine phosphoribosyltransferase
           {Bacillus subtilis [TaxId: 1423]}
          Length = 191

 Score = 31.5 bits (71), Expect = 0.018
 Identities = 11/37 (29%), Positives = 15/37 (40%)

Query: 17  GLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILTF 53
              +L+IDD    G  A      +K+AGA    I   
Sbjct: 117 QDHVLIIDDFLANGQAAHGLVSIVKQAGASIAGIGIV 153


>d1l1qa_ c.61.1.1 (A:) Adenine PRTase {Giardia lamblia [TaxId:
           5741]}
          Length = 181

 Score = 30.4 bits (68), Expect = 0.042
 Identities = 11/29 (37%), Positives = 13/29 (44%)

Query: 17  GLKILLIDDVYTTGATAKCAAIALKKAGA 45
              +LL DDV  TG T   A    + AG 
Sbjct: 116 HDVVLLHDDVLATGGTLLAAIELCETAGV 144


>d1wd5a_ c.61.1.1 (A:) Putative phosphoribosyltransferase TT1426
           (TTHA1462) {Thermus thermophilus [TaxId: 274]}
          Length = 208

 Score = 29.7 bits (66), Expect = 0.078
 Identities = 9/31 (29%), Positives = 16/31 (51%)

Query: 15  VAGLKILLIDDVYTTGATAKCAAIALKKAGA 45
             G  ++L+DD   TGA+ + A   + + G 
Sbjct: 118 RKGRDVVLVDDGVATGASMEAALSVVFQEGP 148


>d1o57a2 c.61.1.1 (A:75-276) Pur operon repressor (PurR), C-terminal
           domain {Bacillus subtilis [TaxId: 1423]}
          Length = 202

 Score = 28.9 bits (64), Expect = 0.11
 Identities = 10/35 (28%), Positives = 13/35 (37%)

Query: 17  GLKILLIDDVYTTGATAKCAAIALKKAGAMTVSIL 51
           G  +L+IDD    G T       L +  A    I 
Sbjct: 122 GSNVLIIDDFMKAGGTINGMINLLDEFNANVAGIG 156


>d1nula_ c.61.1.1 (A:) Xanthine-guanine PRTase (XPRTase)
           {Escherichia coli [TaxId: 562]}
          Length = 150

 Score = 27.7 bits (61), Expect = 0.27
 Identities = 14/54 (25%), Positives = 20/54 (37%)

Query: 6   NVPQYVSKHVAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILTFSRSLKD 59
            +         G   ++IDD+  TG TA        KA  +T+      R L D
Sbjct: 68  ELKVLKRAEGDGEGFIVIDDLVDTGGTAVAIREMYPKAHFVTIFAKPAGRPLVD 121


>d1v9sa1 c.61.1.1 (A:1-208) Uracil PRTase, Upp {Thermus thermophilus
           [TaxId: 274]}
          Length = 208

 Score = 25.7 bits (56), Expect = 1.0
 Identities = 12/45 (26%), Positives = 21/45 (46%)

Query: 12  SKHVAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILTFSRS 56
              +A  +  L+D +  TG +A  A   LK+ GA  V ++    +
Sbjct: 118 PPDIAERRAFLLDPMLATGGSASLALSLLKERGATGVKLMAILAA 162


>d1w30a_ c.61.1.1 (A:) Pyrimidine operon regulator PyrR
           {Mycobacterium tuberculosis [TaxId: 1773]}
          Length = 182

 Score = 25.4 bits (55), Expect = 1.3
 Identities = 9/32 (28%), Positives = 17/32 (53%)

Query: 14  HVAGLKILLIDDVYTTGATAKCAAIALKKAGA 45
            +    ++L+DDV  +G + + A  AL+  G 
Sbjct: 98  GIDDALVILVDDVLYSGRSVRSALDALRDVGR 129


>d1a3ca_ c.61.1.1 (A:) Pyrimidine operon regulator PyrR {Bacillus
           subtilis [TaxId: 1423]}
          Length = 178

 Score = 25.4 bits (55), Expect = 1.5
 Identities = 12/39 (30%), Positives = 18/39 (46%)

Query: 14  HVAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILT 52
            +   K++L+DDV  TG T +    AL   G  +   L 
Sbjct: 93  DITDQKVILVDDVLYTGRTVRAGMDALVDVGRPSSIQLA 131


>d1i5ea_ c.61.1.1 (A:) Uracil PRTase, Upp {Bacillus caldolyticus
           [TaxId: 1394]}
          Length = 208

 Score = 24.1 bits (52), Expect = 3.5
 Identities = 12/41 (29%), Positives = 20/41 (48%)

Query: 13  KHVAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILTF 53
             V     +++D +  TG +A  A  ALKK GA ++  +  
Sbjct: 119 SDVEERDFIIVDPMLATGGSAVAAIDALKKRGAKSIKFMCL 159


>d1bd3a_ c.61.1.1 (A:) Uracil PRTase, Upp {Toxoplasma gondii [TaxId:
           5811]}
          Length = 224

 Score = 23.8 bits (51), Expect = 4.3
 Identities = 7/42 (16%), Positives = 16/42 (38%)

Query: 13  KHVAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILTFS 54
             +    ++L+D +  T  +   A   L + G     I+  +
Sbjct: 133 ADIRERWVMLLDPMCATAGSVCKAIEVLLRLGVKEERIIFVN 174


>d1dcfa_ c.23.1.2 (A:) Receiver domain of the ethylene receptor
          {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
          Length = 134

 Score = 23.0 bits (49), Expect = 7.0
 Identities = 5/10 (50%), Positives = 9/10 (90%)

Query: 16 AGLKILLIDD 25
           GLK+L++D+
Sbjct: 6  TGLKVLVMDE 15


>d1dkua2 c.61.1.2 (A:167-315) Phosphoribosylpyrophosphate
          synthetase {Bacillus subtilis [TaxId: 1423]}
          Length = 149

 Score = 23.0 bits (49), Expect = 7.6
 Identities = 14/40 (35%), Positives = 18/40 (45%)

Query: 15 VAGLKILLIDDVYTTGATAKCAAIALKKAGAMTVSILTFS 54
          + G   +LIDD+  T  T   AA AL + GA  V      
Sbjct: 48 IEGKTAILIDDIIDTAGTITLAANALVENGAKEVYACCTH 87


>d1ufra_ c.61.1.1 (A:) Pyrimidine operon regulator PyrR {Thermus
           thermophilus [TaxId: 274]}
          Length = 178

 Score = 22.7 bits (48), Expect = 7.8
 Identities = 14/37 (37%), Positives = 19/37 (51%)

Query: 8   PQYVSKHVAGLKILLIDDVYTTGATAKCAAIALKKAG 44
              +   + G  I+L+DDV  TG TA+ A  AL   G
Sbjct: 87  ETRIPFDLTGKAIVLVDDVLYTGRTARAALDALIDLG 123


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.131    0.361 

Gapped
Lambda     K      H
   0.267   0.0543    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 192,500
Number of extensions: 6159
Number of successful extensions: 56
Number of sequences better than 10.0: 1
Number of HSP's gapped: 56
Number of HSP's successfully gapped: 20
Length of query: 59
Length of database: 2,407,596
Length adjustment: 29
Effective length of query: 30
Effective length of database: 2,009,426
Effective search space: 60282780
Effective search space used: 60282780
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 47 (22.3 bits)