HHsearch alignment for GI: 254780310 and conserved domain: TIGR00201
>TIGR00201 comF comF family protein; InterPro: IPR005222 Proteins in this family are found in bacterial species which posses systems for natural transformation with exogenous DNA (eg Bacillus subtilis, Haemophilus influenzae), and also species without these systems (eg Escherichia coli). Competence protein F has been shown to be important for the uptake of exogenous DNA in naturally competent bacteria, though the precise role of this protein is not yet known , . GntX is a periplasmic gluconate binding protein thought to be part of a high-affinity gluconate transport system ..
Probab=99.30 E-value=1e-12 Score=90.81 Aligned_cols=82 Identities=17% Similarity=0.286 Sum_probs=71.9
Q ss_pred CCCCCCCCCCCCEECHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCHH
Q ss_conf 71037515657702888995086767862012444653347608985167843530120002127999999974478766
Q gi|254780310|r 24 CPIYSRIINLRFCLCGHCWSKIHFITATEHILKNNKDNIDKDPLKSMQKDLPLTQIRSVTLYCDMSCVLVRLLKYHDRTD 103 (119)
Q Consensus 24 C~~C~~~~~~~~~lC~~C~~~l~~i~~~~C~~Cg~~~~~~~~C~~C~~~~~~f~~~~a~~~Y~~~~r~lI~~~Ky~~~~~ 103 (119)
T Consensus 1 C~~C~k~~~S~~a~C~~C~~~~t~~--------------~~~CG~~L~~~P~W~~l~~v~~Y~~~l~~li~~fKf~~~~~ 66 (207)
T TIGR00201 1 CSLCGKRIKSSKALCDQCGSERTLF--------------RDSCGLCLKQNPSWDKLVSVFEYKEPLKELISRFKFDAQAE 66 (207)
T ss_pred CCCCCCCCCCCCCCCCCCCCHHHHH--------------HCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHCCCCHHH
T ss_conf 9888887300776246666246664--------------11023013787581303777605434789999733450368
Q ss_pred HHHHHHHHHHHHHHCC
Q ss_conf 9999999999997429
Q gi|254780310|r 104 LAIMMAQWMFRVLEKI 119 (119)
Q Consensus 104 la~~la~~m~r~~~~i 119 (119)
T Consensus 67 I~~~L~~~l~~~~~~~ 82 (207)
T TIGR00201 67 IARALASLLALTVSKA 82 (207)
T ss_pred HHHHHHHHHHHHHHHC
T ss_conf 9999889999998603