Query gi|254780310|ref|YP_003064723.1| hypothetical protein CLIBASIA_00975 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 119 No_of_seqs 116 out of 730 Neff 7.9 Searched_HMMs 23785 Date Mon May 30 07:53:42 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780310.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 1t1h_A Gspef-atpub14, armadill 82.4 0.73 3.1E-05 24.0 2.8 62 23-102 10-77 (78) 2 2k0a_A PRE-mRNA-splicing facto 67.6 3.2 0.00013 20.4 2.8 49 22-73 30-82 (109) 3 2ecy_A TNF receptor-associated 65.3 3.3 0.00014 20.3 2.5 41 23-63 17-63 (66) 4 2kre_A Ubiquitin conjugation f 65.2 7.2 0.0003 18.5 4.9 60 23-101 31-96 (100) 5 1weo_A Cellulose synthase, cat 63.0 3.2 0.00014 20.4 2.1 42 21-62 16-70 (93) 6 1jm7_A BRCA1, breast cancer ty 62.8 8 0.00034 18.2 4.4 55 5-62 8-70 (112) 7 2f42_A STIP1 homology and U-bo 58.9 6.1 0.00026 18.9 3.0 61 23-101 108-174 (179) 8 1e4u_A Transcriptional repress 57.4 8.9 0.00037 18.0 3.6 42 21-62 11-62 (78) 9 2cup_A Skeletal muscle LIM-pro 53.6 10 0.00043 17.6 3.4 37 23-62 35-78 (101) 10 3lrq_A E3 ubiquitin-protein li 52.9 9.1 0.00038 17.9 3.0 48 12-62 16-70 (100) 11 3fl2_A E3 ubiquitin-protein li 51.7 6.2 0.00026 18.8 2.0 40 23-62 54-99 (124) 12 2jne_A Hypothetical protein YF 48.3 1.2 5.1E-05 22.7 -2.0 39 22-62 33-73 (101) 13 1rmd_A RAG1; V(D)J recombinati 46.7 6 0.00025 18.9 1.3 40 23-62 25-70 (116) 14 2jrp_A Putative cytoplasmic pr 46.0 1.9 7.8E-05 21.7 -1.4 39 22-62 3-43 (81) 15 3hct_A TNF receptor-associated 45.7 5 0.00021 19.4 0.8 40 23-62 20-65 (118) 16 2ko5_A Ring finger protein Z; 45.0 9.2 0.00039 17.9 2.0 42 21-63 28-74 (99) 17 2d8t_A Dactylidin, ring finger 42.1 17 0.00071 16.4 3.0 41 21-62 15-61 (71) 18 1yuz_A Nigerythrin; rubrythrin 39.9 9.7 0.00041 17.8 1.5 37 11-61 155-197 (202) 19 2kr4_A Ubiquitin conjugation f 38.6 11 0.00048 17.4 1.7 59 23-100 16-80 (85) 20 1rut_X Flinc4, fusion protein 37.8 8.9 0.00038 18.0 1.0 38 23-61 34-80 (188) 21 2vrw_B P95VAV, VAV1, proto-onc 37.5 7.4 0.00031 18.4 0.6 65 10-79 328-398 (406) 22 1nnq_A Rubrerythrin; structura 37.5 11 0.00047 17.4 1.5 11 51-61 155-165 (171) 23 1x3h_A Leupaxin; paxillin fami 37.4 10 0.00042 17.7 1.2 47 19-70 13-69 (80) 24 2ckl_A Polycomb group ring fin 37.4 21 0.0009 15.9 3.8 39 23-62 17-62 (108) 25 1zbd_B Rabphilin-3A; G protein 37.1 19 0.00081 16.1 2.7 51 21-78 55-113 (134) 26 3d00_A Tungsten formylmethanof 36.9 12 0.0005 17.3 1.6 23 52-74 165-189 (191) 27 3nw0_A Non-structural maintena 35.6 23 0.00096 15.7 3.2 48 16-63 172-230 (238) 28 2vut_I AREA, nitrogen regulato 34.7 15 0.00065 16.6 1.9 22 21-42 1-29 (43) 29 2kq9_A DNAK suppressor protein 34.5 17 0.00072 16.4 2.1 27 5-32 66-92 (112) 30 2egp_A Tripartite motif-contai 34.3 23 0.00098 15.7 2.7 41 23-63 14-66 (79) 31 1v6g_A Actin binding LIM prote 33.3 14 0.00059 16.9 1.4 51 18-72 12-72 (81) 32 3l11_A E3 ubiquitin-protein li 33.0 25 0.0011 15.5 2.8 38 23-60 17-60 (115) 33 2ckl_B Ubiquitin ligase protei 31.9 15 0.00064 16.7 1.4 39 23-61 56-101 (165) 34 1z6u_A NP95-like ring finger p 31.3 16 0.00066 16.6 1.4 40 23-62 80-125 (150) 35 2zet_C Melanophilin; complex, 31.2 13 0.00056 17.0 1.0 61 21-89 68-133 (153) 36 2csy_A Zinc finger protein 183 29.5 16 0.00066 16.6 1.2 40 21-61 15-60 (81) 37 2fiy_A Protein FDHE homolog; F 29.2 6.7 0.00028 18.7 -0.7 56 4-60 156-232 (309) 38 3ng2_A RNF4, snurf, ring finge 28.6 14 0.00059 16.9 0.8 40 23-63 12-64 (71) 39 2ct2_A Tripartite motif protei 28.1 25 0.001 15.5 2.0 40 23-62 17-68 (88) 40 2djb_A Polycomb group ring fin 27.6 23 0.00098 15.6 1.8 39 23-62 17-62 (72) 41 2ysl_A Tripartite motif-contai 27.5 32 0.0013 14.9 2.7 40 23-62 22-69 (73) 42 1jm7_B BARD1, BRCA1-associated 26.4 33 0.0014 14.8 3.3 49 8-62 12-67 (117) 43 1lko_A Rubrerythrin all-iron(I 25.9 14 0.0006 16.8 0.5 10 52-61 173-182 (191) 44 1g25_A CDK-activating kinase a 25.7 26 0.0011 15.4 1.7 41 22-62 4-55 (65) 45 1wgm_A Ubiquitin conjugation f 25.7 34 0.0014 14.7 4.5 61 23-102 24-91 (98) 46 3hcs_A TNF receptor-associated 25.4 23 0.00098 15.7 1.5 40 23-62 20-65 (170) 47 2bay_A PRE-mRNA splicing facto 24.5 17 0.00072 16.4 0.6 41 23-64 5-52 (61) 48 2gmg_A Hypothetical protein PF 24.1 12 0.00049 17.3 -0.3 14 18-31 64-77 (105) 49 2egq_A FHL1 protein; LIM domai 23.8 36 0.0015 14.6 2.2 13 20-32 14-26 (77) 50 1l8d_A DNA double-strand break 23.6 22 0.00094 15.7 1.1 11 52-62 49-59 (112) 51 2qkd_A Zinc finger protein ZPR 21.2 8.6 0.00036 18.1 -1.4 36 19-59 218-258 (404) 52 1twf_J DNA-directed RNA polyme 20.9 28 0.0012 15.2 1.1 16 19-34 2-17 (70) 53 2yur_A Retinoblastoma-binding 20.8 30 0.0013 15.0 1.3 39 23-61 17-63 (74) 54 2con_A RUH-035 protein, NIN on 20.7 11 0.00046 17.4 -1.0 23 37-59 17-39 (79) No 1 >1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2 Probab=82.41 E-value=0.73 Score=23.98 Aligned_cols=62 Identities=10% Similarity=-0.106 Sum_probs=40.0 Q ss_pred CCCCCCCCCC------CCCEECHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCHHHHHHHHCCCHHHHHHHHHH Q ss_conf 4710375156------5770288899508676786201244465334760898516784353012000212799999997 Q gi|254780310|r 23 ICPIYSRIIN------LRFCLCGHCWSKIHFITATEHILKNNKDNIDKDPLKSMQKDLPLTQIRSVTLYCDMSCVLVRLL 96 (119) Q Consensus 23 ~C~~C~~~~~------~~~~lC~~C~~~l~~i~~~~C~~Cg~~~~~~~~C~~C~~~~~~f~~~~a~~~Y~~~~r~lI~~~ 96 (119) .|++|..... .+...|..|..+.-......|+.|+.+..... ..-+-.+|++|.+| T Consensus 10 ~CpIc~~~m~dPV~~~cGhtfc~~ci~~~~~~~~~~cP~~~~~l~~~~------------------l~pN~~L~~~I~~~ 71 (78) T 1t1h_A 10 RCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAG------------------LTPNYVLKSLIALW 71 (78) T ss_dssp SCTTTSCCCSSEEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSCC------------------CEECTTTHHHHHHH T ss_pred CCCCCCCHHHCCEECCCCCEEEHHHHHHHHHHCCCCCCCCCCCCCCCC------------------CEEHHHHHHHHHHH T ss_conf 991739263398883799866099999999978197969959787133------------------75909999999999 Q ss_pred HHCCCH Q ss_conf 447876 Q gi|254780310|r 97 KYHDRT 102 (119) Q Consensus 97 Ky~~~~ 102 (119) |-+|+. T Consensus 72 ~~~~~~ 77 (78) T 1t1h_A 72 CESNGI 77 (78) T ss_dssp HHHSCC T ss_pred HHHHCC T ss_conf 998288 No 2 >2k0a_A PRE-mRNA-splicing factor RDS3; zinc finger, topological knot, mRNA processing, nucleus, spliceosome, RNA binding protein; NMR {Saccharomyces cerevisiae} Probab=67.60 E-value=3.2 Score=20.43 Aligned_cols=49 Identities=16% Similarity=0.186 Sum_probs=32.6 Q ss_pred CCCCCCCCCCCC--CCEECHHHHHHCCCCCCCCCCCCCC-CCC-CCCCCHHHHCCC Q ss_conf 747103751565--7702888995086767862012444-653-347608985167 Q gi|254780310|r 22 SICPIYSRIINL--RFCLCGHCWSKIHFITATEHILKNN-KDN-IDKDPLKSMQKD 73 (119) Q Consensus 22 ~~C~~C~~~~~~--~~~lC~~C~~~l~~i~~~~C~~Cg~-~~~-~~~~C~~C~~~~ 73 (119) .+|++|+..+.. ...||.+|.-.- ....|..||. +.. ...+|.+|...+ T Consensus 30 GkCpiCDS~Vrp~~~VrICdeCs~g~---~~~rCIiCg~~~g~~dAYYC~eC~~lE 82 (109) T 2k0a_A 30 GKCPICDSYVRPKRKVRVCENCSFGK---QAKNCIICNLNVGVNDAFYCWECCRLG 82 (109) T ss_dssp TCCTTTCCCCCCCEECEEEHHHHTSS---TTSBCTTTSSSBCCEECEECHHHHHHT T ss_pred CCCCCCCCCCCCCCEEEECCCCCCCC---CCCCEEECCCCCCCCCCEEEHHHHHHH T ss_conf 83675678568765378898888865---588779827998856533308777542 No 3 >2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} Probab=65.32 E-value=3.3 Score=20.35 Aligned_cols=41 Identities=10% Similarity=0.160 Sum_probs=28.2 Q ss_pred CCCCCCCCCC------CCCEECHHHHHHCCCCCCCCCCCCCCCCCCC Q ss_conf 4710375156------5770288899508676786201244465334 Q gi|254780310|r 23 ICPIYSRIIN------LRFCLCGHCWSKIHFITATEHILKNNKDNID 63 (119) Q Consensus 23 ~C~~C~~~~~------~~~~lC~~C~~~l~~i~~~~C~~Cg~~~~~~ 63 (119) .|++|..... -++..|.+|..+.-......||.|+.+...+ T Consensus 17 ~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~l~~~~~~CP~Cr~~i~~~ 63 (66) T 2ecy_A 17 KCEKCHLVLCSPKQTECGHRFCESCMAALLSSSSPKCTACQESIVKD 63 (66) T ss_dssp ECTTTCCEESSCCCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCTT T ss_pred CCCCCCCCCCCCEECCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCC T ss_conf 99684923008478899985109999999998819481629999620 No 4 >2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain elongation factor, alternative splicing, cytoplasm; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B Probab=65.18 E-value=7.2 Score=18.47 Aligned_cols=60 Identities=2% Similarity=-0.114 Sum_probs=39.7 Q ss_pred CCCCCCCCCC------CCCEECHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCHHHHHHHHCCCHHHHHHHHHH Q ss_conf 4710375156------5770288899508676786201244465334760898516784353012000212799999997 Q gi|254780310|r 23 ICPIYSRIIN------LRFCLCGHCWSKIHFITATEHILKNNKDNIDKDPLKSMQKDLPLTQIRSVTLYCDMSCVLVRLL 96 (119) Q Consensus 23 ~C~~C~~~~~------~~~~lC~~C~~~l~~i~~~~C~~Cg~~~~~~~~C~~C~~~~~~f~~~~a~~~Y~~~~r~lI~~~ 96 (119) .|++|..+.. .+...|.+|..+.- ...+.||.|+.+..... ...+-.+++.|.+| T Consensus 31 ~CpI~~~lm~dPV~~~~Ghtf~r~~I~~~l-~~~~~cP~t~~~l~~~~------------------l~pn~~Lk~~I~~~ 91 (100) T 2kre_A 31 RDPLMDTLMTDPVRLPSGTIMDRSIILRHL-LNSPTDPFNRQTLTESM------------------LEPVPELKEQIQAW 91 (100) T ss_dssp BCTTTCSBCSSEEEETTTEEEEHHHHHHHT-TSCSBCSSSCCBCCTTS------------------SEECHHHHHHHHHH T ss_pred CCCCCCCHHCCCEECCCCCEEEHHHHHHHH-HCCCCCCCCCCCCCHHH------------------CEEHHHHHHHHHHH T ss_conf 973848840386676899777577888886-05887999888988673------------------51409999999999 Q ss_pred HHCCC Q ss_conf 44787 Q gi|254780310|r 97 KYHDR 101 (119) Q Consensus 97 Ky~~~ 101 (119) +-.++ T Consensus 92 ~~~~~ 96 (100) T 2kre_A 92 MREKQ 96 (100) T ss_dssp HHTTT T ss_pred HHHHH T ss_conf 99713 No 5 >1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1 Probab=62.98 E-value=3.2 Score=20.39 Aligned_cols=42 Identities=14% Similarity=0.180 Sum_probs=27.5 Q ss_pred CCCCCCCCCCCC---C----------CCEECHHHHHHCCCCCCCCCCCCCCCCCC Q ss_conf 874710375156---5----------77028889950867678620124446533 Q gi|254780310|r 21 PSICPIYSRIIN---L----------RFCLCGHCWSKIHFITATEHILKNNKDNI 62 (119) Q Consensus 21 P~~C~~C~~~~~---~----------~~~lC~~C~~~l~~i~~~~C~~Cg~~~~~ 62 (119) -..|++|...+. . ...+|..|+..+..-....|+.|..++.. T Consensus 16 ~~~C~IC~e~~~~~~~~~~f~~C~~Cgh~~C~~C~~~~~~~~~~~CP~CR~~yk~ 70 (93) T 1weo_A 16 GQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYKR 70 (93) T ss_dssp SCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCCC T ss_pred CCCCCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHH T ss_conf 8998686440133899995656664676673999999998579968787851312 No 6 >1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1 Probab=62.78 E-value=8 Score=18.22 Aligned_cols=55 Identities=20% Similarity=0.353 Sum_probs=35.2 Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCCC------CCEECHHHHHHCCCC--CCCCCCCCCCCCCC Q ss_conf 99999999999998578747103751565------770288899508676--78620124446533 Q gi|254780310|r 5 IQTVKSIIIELFHCIYPSICPIYSRIINL------RFCLCGHCWSKIHFI--TATEHILKNNKDNI 62 (119) Q Consensus 5 ~~~ik~~~~~ll~~lfP~~C~~C~~~~~~------~~~lC~~C~~~l~~i--~~~~C~~Cg~~~~~ 62 (119) ++.+++++..+-+.+ .|++|...... ++.+|..|..+.-.. ....||.|..+... T Consensus 8 ~e~~~~~~~~l~~~l---~C~IC~~~~~~p~~~~CgH~FC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 70 (112) T 1jm7_A 8 VEEVQNVINAMQKIL---ECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITK 70 (112) T ss_dssp HHHHHHHHHHHHHHT---SCSSSCCCCSSCCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCT T ss_pred HHHHHHHHHHCCCCC---CCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCH T ss_conf 999999998564587---998769203892784799617199999999957998979599993876 No 7 >2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C Probab=58.93 E-value=6.1 Score=18.86 Aligned_cols=61 Identities=3% Similarity=-0.216 Sum_probs=38.8 Q ss_pred CCCCCCCCC------CCCCEECHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCHHHHHHHHCCCHHHHHHHHHH Q ss_conf 471037515------65770288899508676786201244465334760898516784353012000212799999997 Q gi|254780310|r 23 ICPIYSRII------NLRFCLCGHCWSKIHFITATEHILKNNKDNIDKDPLKSMQKDLPLTQIRSVTLYCDMSCVLVRLL 96 (119) Q Consensus 23 ~C~~C~~~~------~~~~~lC~~C~~~l~~i~~~~C~~Cg~~~~~~~~C~~C~~~~~~f~~~~a~~~Y~~~~r~lI~~~ 96 (119) .|++|..+. ..++..|.+|..+.-......||.|+.|+...... =+-.++++|.+| T Consensus 108 ~C~i~~~~m~dPv~~~~ghty~~~~i~~~l~~~~~~cP~~r~~l~~~~l~------------------pn~~lk~~i~~~ 169 (179) T 2f42_A 108 CGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQDQLI------------------PNLAMKEVIDAF 169 (179) T ss_dssp BCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCE------------------ECHHHHHHHHHH T ss_pred CCCCCCCCCCCCEECCCCCEECHHHHHHHHHHCCCCCCCCCCCCCHHCCE------------------EHHHHHHHHHHH T ss_conf 77465864768414699797669999999987839898985978710084------------------659999999999 Q ss_pred HHCCC Q ss_conf 44787 Q gi|254780310|r 97 KYHDR 101 (119) Q Consensus 97 Ky~~~ 101 (119) +-.|- T Consensus 170 ~~~n~ 174 (179) T 2f42_A 170 IQENG 174 (179) T ss_dssp HHHCT T ss_pred HHHCC T ss_conf 99778 No 8 >1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B Probab=57.40 E-value=8.9 Score=17.97 Aligned_cols=42 Identities=17% Similarity=0.412 Sum_probs=26.8 Q ss_pred CCCCCCCCCCCCC----------CCEECHHHHHHCCCCCCCCCCCCCCCCCC Q ss_conf 8747103751565----------77028889950867678620124446533 Q gi|254780310|r 21 PSICPIYSRIINL----------RFCLCGHCWSKIHFITATEHILKNNKDNI 62 (119) Q Consensus 21 P~~C~~C~~~~~~----------~~~lC~~C~~~l~~i~~~~C~~Cg~~~~~ 62 (119) +..|++|-..... ++.+|.+|..++.......||.|..+... T Consensus 11 ~~~CpIC~e~~~~~~~~~~~~~CgH~fc~~C~~~~~~~~~~~CP~CR~~~~~ 62 (78) T 1e4u_A 11 PVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPE 62 (78) T ss_dssp CCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSS T ss_pred CCCCCCCCCCCCCCCCEEEECCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCC T ss_conf 9959007723467971488558989787799999973799628587980687 No 9 >2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 Probab=53.56 E-value=10 Score=17.62 Aligned_cols=37 Identities=11% Similarity=0.064 Sum_probs=23.9 Q ss_pred CCCCCCCCCCC-------CCEECHHHHHHCCCCCCCCCCCCCCCCCC Q ss_conf 47103751565-------77028889950867678620124446533 Q gi|254780310|r 23 ICPIYSRIINL-------RFCLCGHCWSKIHFITATEHILKNNKDNI 62 (119) Q Consensus 23 ~C~~C~~~~~~-------~~~lC~~C~~~l~~i~~~~C~~Cg~~~~~ 62 (119) +|..|++.+.. +..+|.+|..+.- .+.|..|+.|... T Consensus 35 ~C~~C~~~L~~~~~~~~~g~~yC~~c~~~~~---~~~C~~C~~~I~~ 78 (101) T 2cup_A 35 RCAKCLHPLANETFVAKDNKILCNKCTTRED---SPKCKGCFKAIVA 78 (101) T ss_dssp CCSSSCCCTTSSCCEEETTEEECHHHHTTCC---CCBCSSSCCBCCS T ss_pred CCCCCCCCCCCCCEEEECCCCCCHHHHHHHC---CCCCCCCCCCCCC T ss_conf 1167898068872356069632228899873---9968878974357 No 10 >3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens} Probab=52.87 E-value=9.1 Score=17.91 Aligned_cols=48 Identities=8% Similarity=0.020 Sum_probs=28.4 Q ss_pred HHHHHHHHCCCCCCCCCCCCCC-------CCEECHHHHHHCCCCCCCCCCCCCCCCCC Q ss_conf 9999998578747103751565-------77028889950867678620124446533 Q gi|254780310|r 12 IIELFHCIYPSICPIYSRIINL-------RFCLCGHCWSKIHFITATEHILKNNKDNI 62 (119) Q Consensus 12 ~~~ll~~lfP~~C~~C~~~~~~-------~~~lC~~C~~~l~~i~~~~C~~Cg~~~~~ 62 (119) +..+-+.+ .|++|...... +..+|..|..+.--.....||.|..+... T Consensus 16 ~e~i~e~~---~C~IC~~~~~~~~~~~~CgH~fC~~Ci~~wl~~~~~~CP~Cr~~~~~ 70 (100) T 3lrq_A 16 VESIAEVF---RCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQL 70 (100) T ss_dssp HHHHHHHT---BCTTTCSBCSSEEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCG T ss_pred HHCCCCCC---CCCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCH T ss_conf 53388789---99864744898458699998879888899998189979897898989 No 11 >3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens} Probab=51.69 E-value=6.2 Score=18.82 Aligned_cols=40 Identities=8% Similarity=0.096 Sum_probs=26.5 Q ss_pred CCCCCCCCCC------CCCEECHHHHHHCCCCCCCCCCCCCCCCCC Q ss_conf 4710375156------577028889950867678620124446533 Q gi|254780310|r 23 ICPIYSRIIN------LRFCLCGHCWSKIHFITATEHILKNNKDNI 62 (119) Q Consensus 23 ~C~~C~~~~~------~~~~lC~~C~~~l~~i~~~~C~~Cg~~~~~ 62 (119) .|++|..... -++.+|..|..+.-......||.|..+... T Consensus 54 ~C~IC~~~~~~pv~~~CgH~fC~~Ci~~w~~~~~~~CP~CR~~i~~ 99 (124) T 3fl2_A 54 QCICCQELVFRPITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGR 99 (124) T ss_dssp BCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCT T ss_pred CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCC T ss_conf 9818283201767678998442879999998585989687990777 No 12 >2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1 Probab=48.26 E-value=1.2 Score=22.75 Aligned_cols=39 Identities=13% Similarity=0.188 Sum_probs=26.2 Q ss_pred CCCCCCCCCCC--CCCEECHHHHHHCCCCCCCCCCCCCCCCCC Q ss_conf 74710375156--577028889950867678620124446533 Q gi|254780310|r 22 SICPIYSRIIN--LRFCLCGHCWSKIHFITATEHILKNNKDNI 62 (119) Q Consensus 22 ~~C~~C~~~~~--~~~~lC~~C~~~l~~i~~~~C~~Cg~~~~~ 62 (119) ..|+.|+..++ ++..-|..|.+.+. ...+||-|+.++.- T Consensus 33 ~~CP~Cq~~L~~~~g~~hC~~C~~~f~--~~a~CPdC~~~Lq~ 73 (101) T 2jne_A 33 LHCPQCQHVLDQDNGHARCRSCGEFIE--MKALCPDCHQPLQV 73 (101) T ss_dssp CBCSSSCSBEEEETTEEEETTTCCEEE--EEEECTTTCSBCEE T ss_pred CCCCCCCCCCEECCCCEECHHHHHHHH--HEECCCCCCCHHHH T ss_conf 458556881224799799677765567--61569740209999 No 13 >1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1 Probab=46.72 E-value=6 Score=18.90 Aligned_cols=40 Identities=13% Similarity=0.140 Sum_probs=27.3 Q ss_pred CCCCCCCCCC------CCCEECHHHHHHCCCCCCCCCCCCCCCCCC Q ss_conf 4710375156------577028889950867678620124446533 Q gi|254780310|r 23 ICPIYSRIIN------LRFCLCGHCWSKIHFITATEHILKNNKDNI 62 (119) Q Consensus 23 ~C~~C~~~~~------~~~~lC~~C~~~l~~i~~~~C~~Cg~~~~~ 62 (119) .|++|...+. =++.+|.+|..+.--...+.||.|..+... T Consensus 25 ~CpIC~~~~~~Pv~~~CgH~FC~~Ci~~~l~~~~~~CP~Cr~~~~~ 70 (116) T 1rmd_A 25 SCQICEHILADPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFP 70 (116) T ss_dssp BCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCG T ss_pred CCCCCCCHHCCCEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCH T ss_conf 8508392424958658998131999999998784989998897988 No 14 >2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2} Probab=45.96 E-value=1.9 Score=21.74 Aligned_cols=39 Identities=10% Similarity=0.190 Sum_probs=28.2 Q ss_pred CCCCCCCCCCCC--CCEECHHHHHHCCCCCCCCCCCCCCCCCC Q ss_conf 747103751565--77028889950867678620124446533 Q gi|254780310|r 22 SICPIYSRIINL--RFCLCGHCWSKIHFITATEHILKNNKDNI 62 (119) Q Consensus 22 ~~C~~C~~~~~~--~~~lC~~C~~~l~~i~~~~C~~Cg~~~~~ 62 (119) ..|+.|+..++. +..-|..|.+.+. ...+||-|+.++.- T Consensus 3 ~~CP~Cq~~L~~~~~~~hC~~C~~~~~--~~a~CPdC~~~Lq~ 43 (81) T 2jrp_A 3 ITCPVCHHALERNGDTAHCETCAKDFS--LQALCPDCRQPLQV 43 (81) T ss_dssp CCCSSSCSCCEECSSEEECTTTCCEEE--EEEECSSSCSCCCE T ss_pred CCCCCCCCCCEECCCCEECHHHHHHHH--HEEECCCCCCHHHH T ss_conf 878777894244699778067664466--46648764367999 No 15 >3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A Probab=45.71 E-value=5 Score=19.36 Aligned_cols=40 Identities=18% Similarity=0.157 Sum_probs=27.1 Q ss_pred CCCCCCCCCC------CCCEECHHHHHHCCCCCCCCCCCCCCCCCC Q ss_conf 4710375156------577028889950867678620124446533 Q gi|254780310|r 23 ICPIYSRIIN------LRFCLCGHCWSKIHFITATEHILKNNKDNI 62 (119) Q Consensus 23 ~C~~C~~~~~------~~~~lC~~C~~~l~~i~~~~C~~Cg~~~~~ 62 (119) .|++|..+.. =+..+|.+|+.+........||.|..+... T Consensus 20 ~C~IC~~~~~~Pv~~~CgH~fC~~Ci~~~~~~~~~~CP~C~~~~~~ 65 (118) T 3hct_A 20 ECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLE 65 (118) T ss_dssp BCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCG T ss_pred CCCCCCCHHCCCEECCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCH T ss_conf 9979694510949957996170999999998289988766778877 No 16 >2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah} Probab=44.98 E-value=9.2 Score=17.88 Aligned_cols=42 Identities=12% Similarity=0.226 Sum_probs=28.6 Q ss_pred CCCCCCCC----CCCC-CCCEECHHHHHHCCCCCCCCCCCCCCCCCCC Q ss_conf 87471037----5156-5770288899508676786201244465334 Q gi|254780310|r 21 PSICPIYS----RIIN-LRFCLCGHCWSKIHFITATEHILKNNKDNID 63 (119) Q Consensus 21 P~~C~~C~----~~~~-~~~~lC~~C~~~l~~i~~~~C~~Cg~~~~~~ 63 (119) |-.|-.|= .++. +++.||-.|...|-- ...+|+.|+.++... T Consensus 28 ~~nCKsCWf~~k~Lv~C~dHYLCl~CL~~ml~-~s~~C~iC~~~LPt~ 74 (99) T 2ko5_A 28 PQFCKSCWFENKGLVECNNHYLCLNCLTLLLS-VSNRCPICKMPLPTK 74 (99) T ss_dssp CCCCCSSCSCCSSEEECSSCEEEHHHHHHTCS-SSSEETTTTEECCCC T ss_pred CCCCHHHHHCCCCEEEECCHHHHHHHHHHHHC-CCCCCCCCCCCCCCC T ss_conf 64465131036871223411569999999863-056776347758860 No 17 >2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Probab=42.14 E-value=17 Score=16.42 Aligned_cols=41 Identities=12% Similarity=0.157 Sum_probs=28.3 Q ss_pred CCCCCCCCCCCCC------CCEECHHHHHHCCCCCCCCCCCCCCCCCC Q ss_conf 8747103751565------77028889950867678620124446533 Q gi|254780310|r 21 PSICPIYSRIINL------RFCLCGHCWSKIHFITATEHILKNNKDNI 62 (119) Q Consensus 21 P~~C~~C~~~~~~------~~~lC~~C~~~l~~i~~~~C~~Cg~~~~~ 62 (119) ...|++|...... ++.+|..|..+.-. ....|+.|..+... T Consensus 15 ~~~C~IC~~~~~~~v~~~CgH~fC~~Ci~~~~~-~~~~CP~Cr~~i~~ 61 (71) T 2d8t_A 15 VPECAICLQTCVHPVSLPCKHVFCYLCVKGASW-LGKRCALCRQEIPE 61 (71) T ss_dssp CCBCSSSSSBCSSEEEETTTEEEEHHHHHHCTT-CSSBCSSSCCBCCH T ss_pred CCCCEEECCCCCCCEEECCCCCCCHHHHHHHHH-CCCCCCCCCCCCCH T ss_conf 982903392148828948999606999999998-29958895988887 No 18 >1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIRON center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A Probab=39.87 E-value=9.7 Score=17.76 Aligned_cols=37 Identities=16% Similarity=0.251 Sum_probs=19.0 Q ss_pred HHHHHHHHHC-CC-----CCCCCCCCCCCCCEECHHHHHHCCCCCCCCCCCCCCCCC Q ss_conf 9999999857-87-----471037515657702888995086767862012444653 Q gi|254780310|r 11 IIIELFHCIY-PS-----ICPIYSRIINLRFCLCGHCWSKIHFITATEHILKNNKDN 61 (119) Q Consensus 11 ~~~~ll~~lf-P~-----~C~~C~~~~~~~~~lC~~C~~~l~~i~~~~C~~Cg~~~~ 61 (119) .++.+++-|- |. .|.+||-....+ .++.||.||.|.. T Consensus 155 ~f~~~le~l~~~~~~~~~~C~~CG~i~~g~--------------~p~~CP~C~~~~~ 197 (202) T 1yuz_A 155 RYLAAYNDIDAPDDDKFHLCPICGYIHKGE--------------DFEKCPICFRPKD 197 (202) T ss_dssp HHHHHHHTTTCCCSCCEEECSSSCCEEESS--------------CCSBCTTTCCBGG T ss_pred HHHHHHHHHHCCCCCEEEECCCCCCEECCC--------------CCCCCCCCCCCHH T ss_conf 999999987377888067889999852499--------------8998999998744 No 19 >2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus} Probab=38.60 E-value=11 Score=17.36 Aligned_cols=59 Identities=2% Similarity=-0.150 Sum_probs=36.4 Q ss_pred CCCCCCCCC------CCCCEECHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCHHHHHHHHCCCHHHHHHHHHH Q ss_conf 471037515------65770288899508676786201244465334760898516784353012000212799999997 Q gi|254780310|r 23 ICPIYSRII------NLRFCLCGHCWSKIHFITATEHILKNNKDNIDKDPLKSMQKDLPLTQIRSVTLYCDMSCVLVRLL 96 (119) Q Consensus 23 ~C~~C~~~~------~~~~~lC~~C~~~l~~i~~~~C~~Cg~~~~~~~~C~~C~~~~~~f~~~~a~~~Y~~~~r~lI~~~ 96 (119) .|++|+.+. ..+...|..|..+.- .....|+.|+.+...... .=+-.+++.|-+| T Consensus 16 ~CpI~~~lm~dPV~~~cGhtf~r~~I~~~l-~~~~~cP~t~~~l~~~~l------------------~pn~~Lk~~I~~~ 76 (85) T 2kr4_A 16 RDPLMDTLMTDPVRLPSGTVMDRSIILRHL-LNSPTDPFNRQMLTESML------------------EPVPELKEQIQAW 76 (85) T ss_dssp BCTTTCSBCSSEEECTTSCEEEHHHHHHHH-HHCSBCTTTCCBCCGGGC------------------EECHHHHHHHHHH T ss_pred CCCCCCCCCCCCEECCCCCEECHHHHHHHH-HCCCCCCCCCCCCCHHHC------------------EECHHHHHHHHHH T ss_conf 984858822588786998977299999999-729977888783785633------------------1649999999999 Q ss_pred HHCC Q ss_conf 4478 Q gi|254780310|r 97 KYHD 100 (119) Q Consensus 97 Ky~~ 100 (119) |-.+ T Consensus 77 ~~~~ 80 (85) T 2kr4_A 77 MREK 80 (85) T ss_dssp HHHH T ss_pred HHHH T ss_conf 9983 No 20 >1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X Probab=37.76 E-value=8.9 Score=17.96 Aligned_cols=38 Identities=8% Similarity=0.102 Sum_probs=23.4 Q ss_pred CCCCCCCCCC---------CCCEECHHHHHHCCCCCCCCCCCCCCCCC Q ss_conf 4710375156---------57702888995086767862012444653 Q gi|254780310|r 23 ICPIYSRIIN---------LRFCLCGHCWSKIHFITATEHILKNNKDN 61 (119) Q Consensus 23 ~C~~C~~~~~---------~~~~lC~~C~~~l~~i~~~~C~~Cg~~~~ 61 (119) +|..|+..+. .+..+|.+|..++. -+.+.|..|+.+.. T Consensus 34 ~C~~C~~~L~~~~~~~~~~~g~~yC~~C~~~~~-~~~~~C~~C~~~I~ 80 (188) T 1rut_X 34 KCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLF-GNSGACSACGQSIP 80 (188) T ss_dssp BCTTTCCBHHHHCSEEEEETTEEECHHHHHHHH-SCCEECTTTCCEEC T ss_pred EECCCCCCCCCCCCEEEEECCCEEEECCCCCCC-CCCCCCCCCCCEEE T ss_conf 968999884578856799779465862610001-44444446798995 No 21 >2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding, polymorphism, metal-binding, phosphoprotein, exchange factor, RAC, zinc, GTPase; 1.85A {Mus musculus} PDB: 3bji_A 1f5x_A Probab=37.49 E-value=7.4 Score=18.42 Aligned_cols=65 Identities=9% Similarity=0.083 Sum_probs=35.8 Q ss_pred HHHHHHHHHHCCCCCCCCCC---CCC-CCCEECHHHHHHCC-CC-CCCCCCCCCCCCCCCCCCHHHHCCCCCHHHH Q ss_conf 99999999857874710375---156-57702888995086-76-7862012444653347608985167843530 Q gi|254780310|r 10 SIIIELFHCIYPSICPIYSR---IIN-LRFCLCGHCWSKIH-FI-TATEHILKNNKDNIDKDPLKSMQKDLPLTQI 79 (119) Q Consensus 10 ~~~~~ll~~lfP~~C~~C~~---~~~-~~~~lC~~C~~~l~-~i-~~~~C~~Cg~~~~~~~~C~~C~~~~~~f~~~ 79 (119) +.+++.++-+-|...-.=+. .++ .+..-|..|...+. .+ ...+|..||. ..|..|..+-|+-++. T Consensus 328 ~~i~~ai~~i~~~~~~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~r~hhCr~Cg~-----~vc~~C~~~~p~~~~~ 398 (406) T 2vrw_B 328 EQFEMAISNIYPENATANGHDFQMFSFEETTSCKACQMLLRGTFYQGYRCYRCRA-----PAHKECLGRVPPCGRH 398 (406) T ss_dssp HHHHHHHHHHSCTTTTGGGCCEEEECCSSCCBCTTTCCBCCSSSSCEEEETTTCC-----EECGGGGGGSCCC--- T ss_pred HHHHHHHHHHHHHHCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCEECCCCCC-----EECHHHHCCCCCCCCC T ss_conf 9999999986352133577884463599998756187820310126747545859-----6364441689877887 No 22 >1nnq_A Rubrerythrin; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics, secsg; 2.35A {Pyrococcus furiosus} SCOP: a.25.1.1 g.41.5.1 PDB: 2hr5_A Probab=37.45 E-value=11 Score=17.43 Aligned_cols=11 Identities=0% Similarity=-0.203 Sum_probs=7.7 Q ss_pred CCCCCCCCCCC Q ss_conf 62012444653 Q gi|254780310|r 51 TEHILKNNKDN 61 (119) Q Consensus 51 ~~C~~Cg~~~~ 61 (119) ..||.||.|.. T Consensus 155 ~~CPvC~~p~~ 165 (171) T 1nnq_A 155 EYCPVCGAPKE 165 (171) T ss_dssp SBCTTTCCBGG T ss_pred CCCCCCCCCHH T ss_conf 97979999676 No 23 >1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 Probab=37.42 E-value=10 Score=17.70 Aligned_cols=47 Identities=4% Similarity=-0.169 Sum_probs=25.9 Q ss_pred HCCCCCCCCCCCCCCCCE-ECHHHHHHCCCCCC-CCCCCCCCCCCCC--------CCCHHHH Q ss_conf 578747103751565770-28889950867678-6201244465334--------7608985 Q gi|254780310|r 19 IYPSICPIYSRIINLRFC-LCGHCWSKIHFITA-TEHILKNNKDNID--------KDPLKSM 70 (119) Q Consensus 19 lfP~~C~~C~~~~~~~~~-lC~~C~~~l~~i~~-~~C~~Cg~~~~~~--------~~C~~C~ 70 (119) +|.++|..|++.+..+.. .... .|... -.|..|+.++... ..|..|. T Consensus 13 ~~~~~C~~C~~~I~~~~v~~~~~-----~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy 69 (80) T 1x3h_A 13 MFSPKCGGCNRPVLENYLSAMDT-----VWHPECFVCGDCFTSFSTGSFFELDGRPFCELHY 69 (80) T ss_dssp CCSCBCTTTCCBCCSSCEEETTE-----EECTTTCBCSSSCCBSCSSCCEESSSCEECHHHH T ss_pred HHCCCHHHCCCEECCEEEEECCC-----EECCCCCEECCCCCCCCCCCEEEECCEEECHHHH T ss_conf 73910042599502809999992-----3675897407889987999579699999277788 No 24 >2ckl_A Polycomb group ring finger protein 4; BMI1, zinc, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 2h0d_A Probab=37.42 E-value=21 Score=15.86 Aligned_cols=39 Identities=10% Similarity=0.147 Sum_probs=25.9 Q ss_pred CCCCCCCCCCC-------CCEECHHHHHHCCCCCCCCCCCCCCCCCC Q ss_conf 47103751565-------77028889950867678620124446533 Q gi|254780310|r 23 ICPIYSRIINL-------RFCLCGHCWSKIHFITATEHILKNNKDNI 62 (119) Q Consensus 23 ~C~~C~~~~~~-------~~~lC~~C~~~l~~i~~~~C~~Cg~~~~~ 62 (119) .|++|...+.. ++.+|..|..+.-. ....||.|..+... T Consensus 17 ~C~IC~~~~~~pv~~~~CgH~FC~~Ci~~~l~-~~~~CP~Cr~~~~~ 62 (108) T 2ckl_A 17 MCVLCGGYFIDATTIIECLHSFCKTCIVRYLE-TSKYCPICDVQVHK 62 (108) T ss_dssp BCTTTSSBCSSEEEETTTCCEEEHHHHHHHHT-SCSBCTTTCCBSCS T ss_pred CCCCCCHHHCCCCEECCCCCCHHHHHHHHHHH-CCCCCCCCCCCCCC T ss_conf 98679937639748158998232999999981-69989897833478 No 25 >1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1 Probab=37.11 E-value=19 Score=16.12 Aligned_cols=51 Identities=6% Similarity=-0.003 Sum_probs=31.9 Q ss_pred CCCCCCCCCCCC---CCCEECHHHHHHCCCCCCCCCCCCCCCCCC-----CCCCHHHHCCCCCHHH Q ss_conf 874710375156---577028889950867678620124446533-----4760898516784353 Q gi|254780310|r 21 PSICPIYSRIIN---LRFCLCGHCWSKIHFITATEHILKNNKDNI-----DKDPLKSMQKDLPLTQ 78 (119) Q Consensus 21 P~~C~~C~~~~~---~~~~lC~~C~~~l~~i~~~~C~~Cg~~~~~-----~~~C~~C~~~~~~f~~ 78 (119) ...|.+|+.... +....|..|.. ..|..|+..... ...|..|....-...+ T Consensus 55 ~~~C~~C~~~f~~l~~~~~~C~~C~~-------~vC~~C~~~~~~~~~~~~w~C~~C~~~rel~~k 113 (134) T 1zbd_B 55 VNRCILCGEQLGMLGSASVVCEDCKK-------NVCTKCGVETSNNRPHPVWLCKICLEQREVWKR 113 (134) T ss_dssp SSBCSSSCCBCSTTSCCEEECTTTCC-------EEETTSEEECCCSSSSCCEEEHHHHHHHHHHHH T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCC-------HHHCCCCCCCCCCCCCCCEECHHHHHHHHHHHH T ss_conf 99193649845676789994799994-------211263776758999988799778999999998 No 26 >3d00_A Tungsten formylmethanofuran dehydrogenase subunit E; YP_460196.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.90A {Syntrophus aciditrophicus} Probab=36.87 E-value=12 Score=17.28 Aligned_cols=23 Identities=4% Similarity=-0.325 Sum_probs=11.7 Q ss_pred CCCCCCCCC--CCCCCCHHHHCCCC Q ss_conf 201244465--33476089851678 Q gi|254780310|r 52 EHILKNNKD--NIDKDPLKSMQKDL 74 (119) Q Consensus 52 ~C~~Cg~~~--~~~~~C~~C~~~~~ 74 (119) .|..||++. ..+..|..|....+ T Consensus 165 ~C~~CGE~v~e~~g~lC~~C~~~~y 189 (191) T 3d00_A 165 LCPQCREAYPAQDGELCLSCQGGSP 189 (191) T ss_dssp ECTTTCCEEEGGGCSSCHHHHTTCC T ss_pred ECCCCCCCEEECCCCCCCCCCCCCC T ss_conf 9988998016579828835699998 No 27 >3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens} Probab=35.60 E-value=23 Score=15.70 Aligned_cols=48 Identities=17% Similarity=0.180 Sum_probs=29.0 Q ss_pred HHHHCCC---CCCCCCCCCC------C-CCEECHHHHHHCCCC-CCCCCCCCCCCCCCC Q ss_conf 9985787---4710375156------5-770288899508676-786201244465334 Q gi|254780310|r 16 FHCIYPS---ICPIYSRIIN------L-RFCLCGHCWSKIHFI-TATEHILKNNKDNID 63 (119) Q Consensus 16 l~~lfP~---~C~~C~~~~~------~-~~~lC~~C~~~l~~i-~~~~C~~Cg~~~~~~ 63 (119) ....++. .|.+|..... . .+.+|..|..+.--. ....||.|..++..+ T Consensus 172 ~~~~~~~~~~~C~iC~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~CP~Cr~~~~~d 230 (238) T 3nw0_A 172 IRETYPDAVKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHE 230 (238) T ss_dssp HHHHCTTTCCBCTTTCSBCSSCEECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCSC T ss_pred HHHHCCCCCCCCCCCCCCCCCCEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCC T ss_conf 64301656875876764467793869999811699999999467898596999878888 No 28 >2vut_I AREA, nitrogen regulatory protein AREA; transcription regulation, protein-protein interactions, metal-binding, nitrate assimilation; HET: NAD; 2.3A {Emericella nidulans} SCOP: g.39.1.1 PDB: 2vus_I* 2vuu_I* Probab=34.67 E-value=15 Score=16.64 Aligned_cols=22 Identities=23% Similarity=0.357 Sum_probs=14.4 Q ss_pred CCCCCCCCCCC-------CCCCEECHHHH Q ss_conf 87471037515-------65770288899 Q gi|254780310|r 21 PSICPIYSRII-------NLRFCLCGHCW 42 (119) Q Consensus 21 P~~C~~C~~~~-------~~~~~lC~~C~ 42 (119) |+.|.-|+... ..+..||..|- T Consensus 1 P~~C~nCgtt~Tp~WRr~~~g~~lCNACG 29 (43) T 2vut_I 1 PTTCTNCFTQTTPLWRRNPEGQPLCNACG 29 (43) T ss_dssp -CCCSSSCCCCCSCCEECTTSCEECHHHH T ss_pred CCCCCCCCCCCCCCCCCCCCCCEEEHHHH T ss_conf 98478888968965403999987215767 No 29 >2kq9_A DNAK suppressor protein; zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Agrobacterium tumefaciens str} Probab=34.54 E-value=17 Score=16.39 Aligned_cols=27 Identities=7% Similarity=0.329 Sum_probs=11.7 Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCC Q ss_conf 9999999999999857874710375156 Q gi|254780310|r 5 IQTVKSIIIELFHCIYPSICPIYSRIIN 32 (119) Q Consensus 5 ~~~ik~~~~~ll~~lfP~~C~~C~~~~~ 32 (119) ++.|...+.++-+=-| ..|..||.+++ T Consensus 66 l~~I~~AL~RI~~GtY-G~C~~CGe~I~ 92 (112) T 2kq9_A 66 LRAIDAALARIASGTF-GTCVKCGKRIS 92 (112) T ss_dssp HHHHHHHHHHHHHTCC-SEETTTTEECC T ss_pred HHHHHHHHHHHHCCCC-CCCCCCCCCCC T ss_conf 9999999999978997-90200199068 No 30 >2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens} Probab=34.34 E-value=23 Score=15.66 Aligned_cols=41 Identities=15% Similarity=0.278 Sum_probs=25.3 Q ss_pred CCCCCCCCCCC------CCEECHHHHHHCCCC------CCCCCCCCCCCCCCC Q ss_conf 47103751565------770288899508676------786201244465334 Q gi|254780310|r 23 ICPIYSRIINL------RFCLCGHCWSKIHFI------TATEHILKNNKDNID 63 (119) Q Consensus 23 ~C~~C~~~~~~------~~~lC~~C~~~l~~i------~~~~C~~Cg~~~~~~ 63 (119) .|++|...... ++.+|.+|..+.-.. ....||.|..+.... T Consensus 14 ~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~ 66 (79) T 2egp_A 14 TCPICLELLTEPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFE 66 (79) T ss_dssp EETTTTEECSSCCCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSS T ss_pred CCCCCCCCCCCCEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHH T ss_conf 99577931168077689887889999999998011368997699959977754 No 31 >1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 Probab=33.27 E-value=14 Score=16.88 Aligned_cols=51 Identities=8% Similarity=-0.115 Sum_probs=27.7 Q ss_pred HHCCCCCCCCCCCCCCCCEECHHHHHHCCCCCC-CCCCCCCCCCCC---------CCCCHHHHCC Q ss_conf 857874710375156577028889950867678-620124446533---------4760898516 Q gi|254780310|r 18 CIYPSICPIYSRIINLRFCLCGHCWSKIHFITA-TEHILKNNKDNI---------DKDPLKSMQK 72 (119) Q Consensus 18 ~lfP~~C~~C~~~~~~~~~lC~~C~~~l~~i~~-~~C~~Cg~~~~~---------~~~C~~C~~~ 72 (119) -+|.++|..|+.++..+..... ...|... -.|..|+.++.. ...|..|... T Consensus 12 ~~f~~~C~~C~~~I~~~~v~a~----~~~~H~~CF~C~~C~~~l~~~~~~~~~~~~~~C~~C~~~ 72 (81) T 1v6g_A 12 RLYGTRCFSCDQFIEGEVVSAL----GKTYHPDCFVCAVCRLPFPPGDRVTFNGKECMCQKCSLP 72 (81) T ss_dssp GSCCCBCTTTCCBCCSCCEEET----TEEECTTTSSCSSSCCCCCSSSCEEEETTEEEEHHHHSC T ss_pred HHHCCCCHHCCCCCCCEEEEEC----CEEECCCCCCCCCCCCCCCCCCEEEEECCEEECCCCCCC T ss_conf 7739525304998124189989----918855586518788997999868976998888456985 No 32 >3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, chromosomal protein, DNA repair, metal-binding; 2.12A {Homo sapiens} Probab=32.99 E-value=25 Score=15.45 Aligned_cols=38 Identities=16% Similarity=0.223 Sum_probs=24.4 Q ss_pred CCCCCCCCCCC------CCEECHHHHHHCCCCCCCCCCCCCCCC Q ss_conf 47103751565------770288899508676786201244465 Q gi|254780310|r 23 ICPIYSRIINL------RFCLCGHCWSKIHFITATEHILKNNKD 60 (119) Q Consensus 23 ~C~~C~~~~~~------~~~lC~~C~~~l~~i~~~~C~~Cg~~~ 60 (119) .|++|...+.. ++.+|..|..+.---....||.|-.+. T Consensus 17 ~C~IC~~~~~~pv~l~CgH~fC~~Ci~~~~~~~~~~CP~CR~~~ 60 (115) T 3l11_A 17 QCGICMEILVEPVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRV 60 (115) T ss_dssp BCTTTCSBCSSCEECTTSCEECHHHHHHHTTTTTSBCTTTCCBC T ss_pred CCCCCCCCCCCCEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCC T ss_conf 99788830288078279984349999999997809088979676 No 33 >2ckl_B Ubiquitin ligase protein RING2; BMI1, zinc, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 2h0d_B Probab=31.88 E-value=15 Score=16.69 Aligned_cols=39 Identities=18% Similarity=0.246 Sum_probs=24.1 Q ss_pred CCCCCCCCCC------C-CCEECHHHHHHCCCCCCCCCCCCCCCCC Q ss_conf 4710375156------5-7702888995086767862012444653 Q gi|254780310|r 23 ICPIYSRIIN------L-RFCLCGHCWSKIHFITATEHILKNNKDN 61 (119) Q Consensus 23 ~C~~C~~~~~------~-~~~lC~~C~~~l~~i~~~~C~~Cg~~~~ 61 (119) .|++|-..+. . ++.+|..|..+.-......||.|..+.. T Consensus 56 ~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~ 101 (165) T 2ckl_B 56 MCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLV 101 (165) T ss_dssp BCTTTSSBCSSEEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCC T ss_pred CCCCCCHHHHCCCCCCCCCCEECHHHHHHHHHHCCCCCCCCCCCCC T ss_conf 9826880764866358999976499999999967998966689777 No 34 >1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens} Probab=31.34 E-value=16 Score=16.61 Aligned_cols=40 Identities=8% Similarity=0.136 Sum_probs=25.1 Q ss_pred CCCCCCCCCC------CCCEECHHHHHHCCCCCCCCCCCCCCCCCC Q ss_conf 4710375156------577028889950867678620124446533 Q gi|254780310|r 23 ICPIYSRIIN------LRFCLCGHCWSKIHFITATEHILKNNKDNI 62 (119) Q Consensus 23 ~C~~C~~~~~------~~~~lC~~C~~~l~~i~~~~C~~Cg~~~~~ 62 (119) .|++|-.... =++.+|.+|....--.....||.|..+... T Consensus 80 ~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~l~~~~~~CP~CR~~i~~ 125 (150) T 1z6u_A 80 MCVCCQELVYQPVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQ 125 (150) T ss_dssp BCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCT T ss_pred CCCCCCCCCCCCEECCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCC T ss_conf 9958485047947889998221999999999780989788992766 No 35 >2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus} Probab=31.21 E-value=13 Score=17.01 Aligned_cols=61 Identities=7% Similarity=-0.151 Sum_probs=36.5 Q ss_pred CCCCCCCCCCCC---CCCEECHHHHHHCCCCCCCCCCCCCCCC--CCCCCCHHHHCCCCCHHHHHHHHCCCHHH Q ss_conf 874710375156---5770288899508676786201244465--33476089851678435301200021279 Q gi|254780310|r 21 PSICPIYSRIIN---LRFCLCGHCWSKIHFITATEHILKNNKD--NIDKDPLKSMQKDLPLTQIRSVTLYCDMS 89 (119) Q Consensus 21 P~~C~~C~~~~~---~~~~lC~~C~~~l~~i~~~~C~~Cg~~~--~~~~~C~~C~~~~~~f~~~~a~~~Y~~~~ 89 (119) ++.|..|+.... +....|.+|-. ..|..|+... .....|..|....-..... ..|.|+... T Consensus 68 ~~~C~~C~~~f~~l~~~~~~C~~C~~-------~vC~~C~~~~~~~~~w~C~~C~k~re~~~~s-g~Wf~~~~~ 133 (153) T 2zet_C 68 ETHCARCLQPYRLLLNSRRQCLECSL-------FVCKSCSHAHPEEQGWLCDPCHLARVVKIGS-LEWYYQHVR 133 (153) T ss_dssp GTBCTTTCCBGGGCSSCCEECTTTCC-------EECGGGEECCSSSSSCEEHHHHHHHHHHHHH-CHHHHHHHH T ss_pred CCHHHHHCCCCCCCCCCCCCCCCCCH-------HHHHHCCCCCCCCCCEECCCCHHHHHHHHHH-HHHHHHHHH T ss_conf 64004547865454578873434760-------2112202467899987861049889999998-737888889 No 36 >2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Probab=29.52 E-value=16 Score=16.60 Aligned_cols=40 Identities=15% Similarity=0.279 Sum_probs=26.1 Q ss_pred CCCCCCCCCCCCC------CCEECHHHHHHCCCCCCCCCCCCCCCCC Q ss_conf 8747103751565------7702888995086767862012444653 Q gi|254780310|r 21 PSICPIYSRIINL------RFCLCGHCWSKIHFITATEHILKNNKDN 61 (119) Q Consensus 21 P~~C~~C~~~~~~------~~~lC~~C~~~l~~i~~~~C~~Cg~~~~ 61 (119) |-.|++|...... .+.+|..|..+.-. ....||.|..+.. T Consensus 15 ~~~C~IC~~~~~~p~~~~C~H~fC~~Ci~~~~~-~~~~CP~Cr~~~~ 60 (81) T 2csy_A 15 PFRCFICRQAFQNPVVTKCRHYFCESCALEHFR-ATPRCYICDQPTG 60 (81) T ss_dssp CSBCSSSCSBCCSEEECTTSCEEEHHHHHHHHH-HCSBCSSSCCBCC T ss_pred CCCCCCCCCCCCCCEECCCCCCHHHHHHHHHHH-CCCCCCCCCCCCC T ss_conf 999976873208937847998024999999998-1995888997774 No 37 >2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics; 2.10A {Pseudomonas aeruginosa PAO1} SCOP: e.59.1.1 Probab=29.24 E-value=6.7 Score=18.66 Aligned_cols=56 Identities=11% Similarity=0.260 Sum_probs=35.8 Q ss_pred HHHHHHHHHHHHHHHHCC---------CCCCCCCCC-----CC---C-C---CEECHHHHHHCCCCCCCCCCCCCCCC Q ss_conf 999999999999998578---------747103751-----56---5-7---70288899508676786201244465 Q gi|254780310|r 4 IIQTVKSIIIELFHCIYP---------SICPIYSRI-----IN---L-R---FCLCGHCWSKIHFITATEHILKNNKD 60 (119) Q Consensus 4 ~~~~ik~~~~~ll~~lfP---------~~C~~C~~~-----~~---~-~---~~lC~~C~~~l~~i~~~~C~~Cg~~~ 60 (119) +..++...+..+...|=+ ..|++||.. +. . + ...|.-|..+.++. ...|+.||... T Consensus 156 i~aALq~~~a~~A~~l~~~~~~~~~~~g~CPvCGs~P~~s~l~~~~~~~G~R~L~CslC~teW~~~-R~~C~~Cg~~~ 232 (309) T 2fiy_A 156 LGAALQVAWSHWLLGLEEGAVVETESRTLCPACGSPPMAGMIRQGGKETGLRYLSCSLCACEWHYV-RIKCSHCEESK 232 (309) T ss_dssp HHHHHHHHHHHHHHTCCTTCSCCCTTCSSCTTTCCCEEEEEEEC----CCEEEEEETTTCCEEECC-TTSCSSSCCCS T ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHEEECCCCCCCCEEEECCCCCCCCCEE-CCCCCCCCCCC T ss_conf 999999999999970687455777669949999980310324236877785688768888845200-77791999999 No 38 >3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus} Probab=28.56 E-value=14 Score=16.87 Aligned_cols=40 Identities=20% Similarity=0.256 Sum_probs=26.0 Q ss_pred CCCCCCCCCC-------------CCCEECHHHHHHCCCCCCCCCCCCCCCCCCC Q ss_conf 4710375156-------------5770288899508676786201244465334 Q gi|254780310|r 23 ICPIYSRIIN-------------LRFCLCGHCWSKIHFITATEHILKNNKDNID 63 (119) Q Consensus 23 ~C~~C~~~~~-------------~~~~lC~~C~~~l~~i~~~~C~~Cg~~~~~~ 63 (119) .|++|..... =++.+|..|+.+.- .....||.|..+.... T Consensus 12 ~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~-~~~~~CP~Cr~~~~~~ 64 (71) T 3ng2_A 12 SCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSL-KNANTCPTCRKKINHK 64 (71) T ss_dssp BCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHH-HHCSBCTTTCCBCCCC T ss_pred CCCCCCHHHHCCCCCCCCEEECCCCCEECHHHHHHHH-HHCCCCCCCCCCCCCC T ss_conf 9942683031644457774965799941589999999-8199898979667955 No 39 >2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Probab=28.13 E-value=25 Score=15.52 Aligned_cols=40 Identities=18% Similarity=0.337 Sum_probs=24.8 Q ss_pred CCCCCCCCCCC----------CCEECHHHHHHCCCC--CCCCCCCCCCCCCC Q ss_conf 47103751565----------770288899508676--78620124446533 Q gi|254780310|r 23 ICPIYSRIINL----------RFCLCGHCWSKIHFI--TATEHILKNNKDNI 62 (119) Q Consensus 23 ~C~~C~~~~~~----------~~~lC~~C~~~l~~i--~~~~C~~Cg~~~~~ 62 (119) .|++|...... ++.+|.+|..++-.. ....||.|..+... T Consensus 17 ~C~IC~~~~~~~~~~p~~l~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 68 (88) T 2ct2_A 17 ECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRI 68 (88) T ss_dssp BCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCC T ss_pred CCCCCCCCCCCCCCCCEECCCCCEEHHHHHHHHHHHCCCCCCCCCCCCEEEC T ss_conf 9914691011765454735899800199999999958998399989987477 No 40 >2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Probab=27.62 E-value=23 Score=15.65 Aligned_cols=39 Identities=13% Similarity=0.151 Sum_probs=26.3 Q ss_pred CCCCCCCCCCC-------CCEECHHHHHHCCCCCCCCCCCCCCCCCC Q ss_conf 47103751565-------77028889950867678620124446533 Q gi|254780310|r 23 ICPIYSRIINL-------RFCLCGHCWSKIHFITATEHILKNNKDNI 62 (119) Q Consensus 23 ~C~~C~~~~~~-------~~~lC~~C~~~l~~i~~~~C~~Cg~~~~~ 62 (119) .|++|...+.. .+.+|..|+.+.- .....||.|..+... T Consensus 17 ~C~IC~~~~~~~~~~~~C~H~fC~~Ci~~~l-~~~~~CP~Cr~~i~~ 62 (72) T 2djb_A 17 LCSICKGYLIDATTITECLHTFCKSCIVRHF-YYSNRCPKCNIVVHQ 62 (72) T ss_dssp SCTTTSSCCSSCEECSSSCCEECHHHHHHHH-HHCSSCTTTCCCCCS T ss_pred CCCCCCCHHCCCCEECCCCCCCCHHHHHHHH-HCCCCCCCCCCCCCC T ss_conf 9811694401971889899836989999999-759948998977677 No 41 >2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} Probab=27.51 E-value=32 Score=14.91 Aligned_cols=40 Identities=23% Similarity=0.335 Sum_probs=25.2 Q ss_pred CCCCCCCCCC------CCCEECHHHHHHCCCCC--CCCCCCCCCCCCC Q ss_conf 4710375156------57702888995086767--8620124446533 Q gi|254780310|r 23 ICPIYSRIIN------LRFCLCGHCWSKIHFIT--ATEHILKNNKDNI 62 (119) Q Consensus 23 ~C~~C~~~~~------~~~~lC~~C~~~l~~i~--~~~C~~Cg~~~~~ 62 (119) .|++|..... =++.+|.+|..++-... ...||.|..+... T Consensus 22 ~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 69 (73) T 2ysl_A 22 ICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRK 69 (73) T ss_dssp BCTTTCSBCSSEEECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCC T ss_pred CCCCCCCCCCCEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCH T ss_conf 986768415893886799816699999999977998889798898935 No 42 >1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1 Probab=26.41 E-value=33 Score=14.80 Aligned_cols=49 Identities=16% Similarity=0.226 Sum_probs=29.5 Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCC-------CCEECHHHHHHCCCCCCCCCCCCCCCCCC Q ss_conf 99999999998578747103751565-------77028889950867678620124446533 Q gi|254780310|r 8 VKSIIIELFHCIYPSICPIYSRIINL-------RFCLCGHCWSKIHFITATEHILKNNKDNI 62 (119) Q Consensus 8 ik~~~~~ll~~lfP~~C~~C~~~~~~-------~~~lC~~C~~~l~~i~~~~C~~Cg~~~~~ 62 (119) -+..+..+-+.| .|++|...... ++.+|..|..+.- . ..||.|..+... T Consensus 12 ~~~~l~~l~~~L---~C~IC~~~~~~pv~l~~CgH~fC~~Ci~~~~--~-~~CP~Cr~~~~~ 67 (117) T 1jm7_B 12 SRAALDRLEKLL---RCSRCTNILREPVCLGGCEHIFCSNCVSDCI--G-TGCPVCYTPAWI 67 (117) T ss_dssp HHHHHHHHHHTT---SCSSSCSCCSSCBCCCSSSCCBCTTTGGGGT--T-TBCSSSCCBCSC T ss_pred HHHHHHCCCCCC---CCCCCCCCCCCCEEECCCCCCCCHHHHHHHH--H-CCCCCCCCCCCH T ss_conf 799998185078---9578894215973857899954499999998--3-669767893878 No 43 >1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubredoxin-like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A Probab=25.92 E-value=14 Score=16.81 Aligned_cols=10 Identities=0% Similarity=-0.336 Sum_probs=5.8 Q ss_pred CCCCCCCCCC Q ss_conf 2012444653 Q gi|254780310|r 52 EHILKNNKDN 61 (119) Q Consensus 52 ~C~~Cg~~~~ 61 (119) .||.|+.|.+ T Consensus 173 ~CP~C~~~~~ 182 (191) T 1lko_A 173 LCPACAHPKA 182 (191) T ss_dssp BCTTTCCBGG T ss_pred CCCCCCCCHH T ss_conf 5979999659 No 44 >1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1 Probab=25.74 E-value=26 Score=15.43 Aligned_cols=41 Identities=15% Similarity=0.100 Sum_probs=25.1 Q ss_pred CCCCCCCCCC-----------CCCCEECHHHHHHCCCCCCCCCCCCCCCCCC Q ss_conf 7471037515-----------6577028889950867678620124446533 Q gi|254780310|r 22 SICPIYSRII-----------NLRFCLCGHCWSKIHFITATEHILKNNKDNI 62 (119) Q Consensus 22 ~~C~~C~~~~-----------~~~~~lC~~C~~~l~~i~~~~C~~Cg~~~~~ 62 (119) ..|++|.... .=++.+|.+|..+.-......||.|..+... T Consensus 4 ~~C~IC~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~~CP~Cr~~i~~ 55 (65) T 1g25_A 4 QGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRK 55 (65) T ss_dssp TCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSS T ss_pred CCCCCCCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCC T ss_conf 8777188383229836798448898224689999995784848898989661 No 45 >1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2 Probab=25.70 E-value=34 Score=14.73 Aligned_cols=61 Identities=7% Similarity=-0.009 Sum_probs=38.0 Q ss_pred CCCCCCCCCC------CCC-EECHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCHHHHHHHHCCCHHHHHHHHH Q ss_conf 4710375156------577-028889950867678620124446533476089851678435301200021279999999 Q gi|254780310|r 23 ICPIYSRIIN------LRF-CLCGHCWSKIHFITATEHILKNNKDNIDKDPLKSMQKDLPLTQIRSVTLYCDMSCVLVRL 95 (119) Q Consensus 23 ~C~~C~~~~~------~~~-~lC~~C~~~l~~i~~~~C~~Cg~~~~~~~~C~~C~~~~~~f~~~~a~~~Y~~~~r~lI~~ 95 (119) .|++|+.+.. ..+ ..|.+|..+. +.....|+.|+.+...... .-+-.+++.|.+ T Consensus 24 ~CPI~~~lm~dPV~~~~~~~tyer~~I~~~-l~~~~~cP~t~~~l~~~~l------------------~pN~~Lk~~I~~ 84 (98) T 1wgm_A 24 LDPIMSTLMCDPVVLPSSRVTVDRSTIARH-LLSDQTDPFNRSPLTMDQI------------------RPNTELKEKIQR 84 (98) T ss_dssp BCTTTCSBCSSEEECTTTCCEEEHHHHHHH-TTTSCBCTTTCSBCCTTTS------------------EECHHHHHHHHH T ss_pred CCCCHHHHHHHHHHCCCCCCHHHHHHHHHH-HHCCCCCCCCCCCCCCCEE------------------ECCHHHHHHHHH T ss_conf 882715588546664678606639999999-9708999899798786604------------------210999999999 Q ss_pred HHHCCCH Q ss_conf 7447876 Q gi|254780310|r 96 LKYHDRT 102 (119) Q Consensus 96 ~Ky~~~~ 102 (119) |+-.++. T Consensus 85 ~~~~~~~ 91 (98) T 1wgm_A 85 WLAERKQ 91 (98) T ss_dssp HHHHSTT T ss_pred HHHHHHH T ss_conf 9999987 No 46 >3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens} Probab=25.42 E-value=23 Score=15.66 Aligned_cols=40 Identities=18% Similarity=0.157 Sum_probs=25.2 Q ss_pred CCCCCCCCCC------CCCEECHHHHHHCCCCCCCCCCCCCCCCCC Q ss_conf 4710375156------577028889950867678620124446533 Q gi|254780310|r 23 ICPIYSRIIN------LRFCLCGHCWSKIHFITATEHILKNNKDNI 62 (119) Q Consensus 23 ~C~~C~~~~~------~~~~lC~~C~~~l~~i~~~~C~~Cg~~~~~ 62 (119) .|++|...+. -+..+|.+|+.+...-....|+.|+.+... T Consensus 20 ~C~IC~~~~~~Pv~~~CgH~fC~~Ci~~~l~~~~~~Cp~c~~~~~~ 65 (170) T 3hcs_A 20 ECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLE 65 (170) T ss_dssp BCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCG T ss_pred CCCCCCCHHCCCEECCCCCCCCHHHHHHHHHHCCCCCCCCHHHCCC T ss_conf 9979884311927878998112999999999579987777122013 No 47 >2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A Probab=24.48 E-value=17 Score=16.40 Aligned_cols=41 Identities=12% Similarity=0.183 Sum_probs=27.3 Q ss_pred CCCCCCCCCC-------CCCEECHHHHHHCCCCCCCCCCCCCCCCCCCC Q ss_conf 4710375156-------57702888995086767862012444653347 Q gi|254780310|r 23 ICPIYSRIIN-------LRFCLCGHCWSKIHFITATEHILKNNKDNIDK 64 (119) Q Consensus 23 ~C~~C~~~~~-------~~~~lC~~C~~~l~~i~~~~C~~Cg~~~~~~~ 64 (119) .|++|..... .+...|.+|..+.- .+...||.|+.+.+.+. T Consensus 5 ~C~Ic~~~~~~Pv~~~~cGh~fc~~cI~~~l-~~~~~CP~c~~~l~~~d 52 (61) T 2bay_A 5 LCAISGKVPRRPVLSPKSRTIFEKSLLEQYV-KDTGNDPITNEPLSIEE 52 (61) T ss_dssp CCTTTCSCCSSEEEETTTTEEEEHHHHHHHH-HHHSBCTTTCCBCCGGG T ss_pred ECCCCCCCCCCCEECCCCCCEECHHHHHHHH-HCCCCCCCCCCCCCHHH T ss_conf 8469899233886968898760298999999-65898989788789784 No 48 >2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structural genomics, PSI; NMR {Pyrococcus furiosus dsm 3638} SCOP: a.4.5.82 Probab=24.09 E-value=12 Score=17.34 Aligned_cols=14 Identities=21% Similarity=0.394 Sum_probs=8.7 Q ss_pred HHCCCCCCCCCCCC Q ss_conf 85787471037515 Q gi|254780310|r 18 CIYPSICPIYSRII 31 (119) Q Consensus 18 ~lfP~~C~~C~~~~ 31 (119) ++.|+.|--||-.. T Consensus 64 ~v~Pp~CrkCGfvF 77 (105) T 2gmg_A 64 LIKPAQCRKCGFVF 77 (105) T ss_dssp EECCCBBTTTCCBC T ss_pred EEECHHHCCCCCEE T ss_conf 98792023085774 No 49 >2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens} Probab=23.83 E-value=36 Score=14.60 Aligned_cols=13 Identities=15% Similarity=0.163 Sum_probs=9.6 Q ss_pred CCCCCCCCCCCCC Q ss_conf 7874710375156 Q gi|254780310|r 20 YPSICPIYSRIIN 32 (119) Q Consensus 20 fP~~C~~C~~~~~ 32 (119) |=+.|..|++++. T Consensus 14 ~~~~C~~C~~~I~ 26 (77) T 2egq_A 14 VAKKCAGCKNPIT 26 (77) T ss_dssp CCCCCSSSCCCCC T ss_pred CCCCCCCCCCCCC T ss_conf 7381636898121 No 50 >1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1 Probab=23.60 E-value=22 Score=15.75 Aligned_cols=11 Identities=0% Similarity=-0.272 Sum_probs=4.9 Q ss_pred CCCCCCCCCCC Q ss_conf 20124446533 Q gi|254780310|r 52 EHILKNNKDNI 62 (119) Q Consensus 52 ~C~~Cg~~~~~ 62 (119) .||.||.|++. T Consensus 49 kCPvCgreLtE 59 (112) T 1l8d_A 49 KCPVCGRELTD 59 (112) T ss_dssp ECTTTCCEECH T ss_pred CCCCCCCCCCH T ss_conf 79988993768 No 51 >2qkd_A Zinc finger protein ZPR1; helical hairpins, beta helix, anti-parrallel beta sheet, double straded anti-parallel beta helix, metal binding protein; 2.00A {Mus musculus} Probab=21.24 E-value=8.6 Score=18.06 Aligned_cols=36 Identities=11% Similarity=0.085 Sum_probs=20.5 Q ss_pred HCCCCCCCCCCCCCCCCEECHHHHHHCCCCCC-----CCCCCCCCC Q ss_conf 57874710375156577028889950867678-----620124446 Q gi|254780310|r 19 IYPSICPIYSRIINLRFCLCGHCWSKIHFITA-----TEHILKNNK 59 (119) Q Consensus 19 lfP~~C~~C~~~~~~~~~lC~~C~~~l~~i~~-----~~C~~Cg~~ 59 (119) -||..|+.|+..... - -+..++|+... ..|..||.. T Consensus 218 ~f~~~CP~C~~~~~~--~---m~~~~IPyF~eviims~~C~~CGyr 258 (404) T 2qkd_A 218 QFNTNCPECNAPAQT--N---MKLVQIPHFKEVIIMATNCENCGHR 258 (404) T ss_dssp EEEECCTTTCCTTCE--E---EEEECCTTSCCEEEEEEECSSSCCE T ss_pred EECCCCCCCCCCCEE--E---EEEEECCCCCEEEEEEEECCCCCCC T ss_conf 956989877872457--8---9997268764289999875767985 No 52 >1twf_J DNA-directed RNA polymerases I, II, and III 8.3 kDa polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.11.1 PDB: 1i3q_J 1i6h_J 1k83_J* 1nik_J 1nt9_J 1pqv_J 1r5u_J 1r9s_J* 1r9t_J* 1sfo_J* 1twa_J* 1twc_J* 1i50_J* 1twg_J* 1twh_J* 1wcm_J 1y1v_J 1y1w_J 1y1y_J 1y77_J* ... Probab=20.92 E-value=28 Score=15.25 Aligned_cols=16 Identities=19% Similarity=0.436 Sum_probs=12.9 Q ss_pred HCCCCCCCCCCCCCCC Q ss_conf 5787471037515657 Q gi|254780310|r 19 IYPSICPIYSRIINLR 34 (119) Q Consensus 19 lfP~~C~~C~~~~~~~ 34 (119) |.|-+|--||+.+++. T Consensus 2 iIPVRCFTCgkvi~~k 17 (70) T 1twf_J 2 IVPVRCFSCGKVVGDK 17 (70) T ss_dssp CCCSBCTTTCCBCTTC T ss_pred CCCCCCCCCCCCHHHH T ss_conf 8886657887064888 No 53 >2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens} Probab=20.83 E-value=30 Score=15.03 Aligned_cols=39 Identities=15% Similarity=0.252 Sum_probs=24.3 Q ss_pred CCCCCCCCCCC-------CCEECHHHHHHCCCC-CCCCCCCCCCCCC Q ss_conf 47103751565-------770288899508676-7862012444653 Q gi|254780310|r 23 ICPIYSRIINL-------RFCLCGHCWSKIHFI-TATEHILKNNKDN 61 (119) Q Consensus 23 ~C~~C~~~~~~-------~~~lC~~C~~~l~~i-~~~~C~~Cg~~~~ 61 (119) .|++|...+.. .+.+|.+|+.+.-.. ....|+.|..+.. T Consensus 17 ~C~IC~~~~~~p~~~~~CgH~fc~~Ci~~~l~~~~~~~CP~Cr~~~~ 63 (74) T 2yur_A 17 LCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV 63 (74) T ss_dssp SCSSSCCCCTTCEECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSC T ss_pred CCCCCCHHHHCCEEECCCCCEECHHHHHHHHHHCCCCCCCCCCCCCC T ss_conf 99664917509718488989999999999998569975979898376 No 54 >2con_A RUH-035 protein, NIN one binding protein; ribosome, RNA binding protein, unknown function, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.41.15.1 Probab=20.70 E-value=11 Score=17.45 Aligned_cols=23 Identities=17% Similarity=0.174 Sum_probs=16.7 Q ss_pred ECHHHHHHCCCCCCCCCCCCCCC Q ss_conf 28889950867678620124446 Q gi|254780310|r 37 LCGHCWSKIHFITATEHILKNNK 59 (119) Q Consensus 37 lC~~C~~~l~~i~~~~C~~Cg~~ 59 (119) -|..|+.-..-.+..+|+.||.+ T Consensus 17 rC~aCf~~t~d~~k~FCpkCGn~ 39 (79) T 2con_A 17 RCHGCFKTTSDMNRVFCGHCGNK 39 (79) T ss_dssp ECSSSCCEESCSSCCSCSSSCCS T ss_pred EEEECCCCCCCCCCCCCCCCCCC T ss_conf 64244669689666327547988 Done!