RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= gi|254780310|ref|YP_003064723.1| hypothetical protein
CLIBASIA_00975 [Candidatus Liberibacter asiaticus str. psy62]
         (119 letters)



>2jtq_A Phage shock protein E; solution structure rhodanese, stress
           response, transferase; NMR {Escherichia coli} PDB:
           2jtr_A 2jts_A (A:)
          Length = 85

 Score = 25.5 bits (56), Expect = 2.8
 Identities = 9/56 (16%), Positives = 17/56 (30%), Gaps = 5/56 (8%)

Query: 61  NIDKDPLKSMQKDLPLTQIRSVTLYCD---MSCVLVRLLKYHDRTDLAIM--MAQW 111
           NI    +K         +  +V +YC+    S     +L     T +     +   
Sbjct: 23  NIPLKEVKERIATAVPDKNDTVKVYCNAGRQSGQAKEILSEMGYTHVENAGGLKDI 78


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.332    0.142    0.462 

Gapped
Lambda     K      H
   0.267   0.0427    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 931,419
Number of extensions: 36102
Number of successful extensions: 86
Number of sequences better than 10.0: 1
Number of HSP's gapped: 86
Number of HSP's successfully gapped: 5
Length of query: 119
Length of database: 4,956,049
Length adjustment: 71
Effective length of query: 48
Effective length of database: 2,555,894
Effective search space: 122682912
Effective search space used: 122682912
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 50 (23.8 bits)