RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= gi|254780310|ref|YP_003064723.1| hypothetical protein CLIBASIA_00975 [Candidatus Liberibacter asiaticus str. psy62] (119 letters) >1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154 Score = 34.2 bits (77), Expect = 0.008 Identities = 9/27 (33%), Positives = 12/27 (44%), Gaps = 8/27 (29%) Query: 63 DKDPLKSMQKDLPLTQIRSVTLYCDMS 89 +K LK +Q S+ LY D S Sbjct: 18 EKQALKKLQA--------SLKLYADDS 36 >1cja_A Protein (actin-fragmin kinase); HET: AMP; 2.90A {Physarum polycephalum} SCOP: d.144.1.3 Length = 342 Score = 27.9 bits (62), Expect = 0.56 Identities = 7/40 (17%), Positives = 15/40 (37%), Gaps = 1/40 (2%) Query: 46 HFITATEHILKNNKDNIDKDPLKSMQKDLPLTQIRSVTLY 85 F + + I ++ + SMQ+ L +R + Sbjct: 264 QFHSIRDIITLYTGYDVGTEGSISMQEGF-LATVRECASF 302 >1wd5_A Hypothetical protein TT1426; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; HET: MES; 2.00A {Thermus thermophilus} SCOP: c.61.1.1 Length = 208 Score = 25.1 bits (54), Expect = 4.2 Identities = 3/17 (17%), Positives = 10/17 (58%) Query: 96 LKYHDRTDLAIMMAQWM 112 +++ DR ++A+ + Sbjct: 1 MRFRDRRHAGALLAEAL 17 >3n0a_A Tyrosine-protein phosphatase auxilin; phosphatase-like domain, C2 domain, hydrolase; 2.20A {Bos taurus} Length = 361 Score = 24.6 bits (53), Expect = 5.9 Identities = 8/54 (14%), Positives = 20/54 (37%), Gaps = 3/54 (5%) Query: 11 IIIELFHCIYPSICPIYSRIINLRFCLCGHCWSKIHFITATEHILKNNKDNIDK 64 +++ ++H + +++ N + FI +LK K +D Sbjct: 254 VVVSMYHLRSTIGSRLQAKVTNTQIF---QLQFHTGFIPLDTTVLKFTKPELDA 304 >2jjd_A Receptor-type tyrosine-protein phosphatase epsilon; transmembrane, phosphoprotein, alternative splicing, consortium, structural, glycoprotein, SGC; 3.20A {Homo sapiens} Length = 599 Score = 24.3 bits (52), Expect = 6.6 Identities = 10/85 (11%), Positives = 25/85 (29%) Query: 4 IIQTVKSIIIELFHCIYPSICPIYSRIINLRFCLCGHCWSKIHFITATEHILKNNKDNID 63 + + V I + + + + L + L G + + + + D Sbjct: 258 VFEFVSRIRNQRPQMVQTDMQYTFIYQALLEYYLYGDTELDVSSLEKHLQTMHGTTTHFD 317 Query: 64 KDPLKSMQKDLPLTQIRSVTLYCDM 88 K L+ + L +I + Sbjct: 318 KIGLEEEFRKLTNVRIMKENMRTGN 342 >1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35 Length = 359 Score = 24.1 bits (52), Expect = 7.4 Identities = 8/51 (15%), Positives = 20/51 (39%), Gaps = 2/51 (3%) Query: 14 ELFHCIYPSICP--IYSRIINLRFCLCGHCWSKIHFITATEHILKNNKDNI 62 ++ + + P Y R+ H + +++ +++NK NI Sbjct: 116 DVDGVCFINGVPGSFYGRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNI 166 >3hp0_A Putative polyketide biosynthesis enoyl-COA hydratase homolog PKSH; polyketide synthase, enoyl COA hydratase,isomerase; 2.32A {Bacillus subtilis} Length = 267 Score = 24.4 bits (52), Expect = 7.7 Identities = 6/40 (15%), Positives = 13/40 (32%) Query: 11 IIIELFHCIYPSICPIYSRIINLRFCLCGHCWSKIHFITA 50 + ++L Y +I + ++ I TA Sbjct: 92 LWMKLQTGPYVTISHVRGKVNAGGLGFVSATDIAIADQTA 131 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.332 0.142 0.462 Gapped Lambda K H 0.267 0.0534 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 1,060,870 Number of extensions: 41917 Number of successful extensions: 120 Number of sequences better than 10.0: 1 Number of HSP's gapped: 119 Number of HSP's successfully gapped: 11 Length of query: 119 Length of database: 5,693,230 Length adjustment: 80 Effective length of query: 39 Effective length of database: 3,753,710 Effective search space: 146394690 Effective search space used: 146394690 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (22.0 bits) S2: 50 (23.5 bits)