RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= gi|254780310|ref|YP_003064723.1| hypothetical protein
CLIBASIA_00975 [Candidatus Liberibacter asiaticus str. psy62]
         (119 letters)



>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
          photosynthetic reaction center, peripheral antenna;
          HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
          Length = 154

 Score = 34.2 bits (77), Expect = 0.008
 Identities = 9/27 (33%), Positives = 12/27 (44%), Gaps = 8/27 (29%)

Query: 63 DKDPLKSMQKDLPLTQIRSVTLYCDMS 89
          +K  LK +Q         S+ LY D S
Sbjct: 18 EKQALKKLQA--------SLKLYADDS 36


>1cja_A Protein (actin-fragmin kinase); HET: AMP; 2.90A {Physarum
           polycephalum} SCOP: d.144.1.3
          Length = 342

 Score = 27.9 bits (62), Expect = 0.56
 Identities = 7/40 (17%), Positives = 15/40 (37%), Gaps = 1/40 (2%)

Query: 46  HFITATEHILKNNKDNIDKDPLKSMQKDLPLTQIRSVTLY 85
            F +  + I      ++  +   SMQ+   L  +R    +
Sbjct: 264 QFHSIRDIITLYTGYDVGTEGSISMQEGF-LATVRECASF 302


>1wd5_A Hypothetical protein TT1426; structural genomics, riken structural
           genomics/proteomics initiative, RSGI, unknown function;
           HET: MES; 2.00A {Thermus thermophilus} SCOP: c.61.1.1
          Length = 208

 Score = 25.1 bits (54), Expect = 4.2
 Identities = 3/17 (17%), Positives = 10/17 (58%)

Query: 96  LKYHDRTDLAIMMAQWM 112
           +++ DR     ++A+ +
Sbjct: 1   MRFRDRRHAGALLAEAL 17


>3n0a_A Tyrosine-protein phosphatase auxilin; phosphatase-like domain, C2
           domain, hydrolase; 2.20A {Bos taurus}
          Length = 361

 Score = 24.6 bits (53), Expect = 5.9
 Identities = 8/54 (14%), Positives = 20/54 (37%), Gaps = 3/54 (5%)

Query: 11  IIIELFHCIYPSICPIYSRIINLRFCLCGHCWSKIHFITATEHILKNNKDNIDK 64
           +++ ++H        + +++ N +            FI     +LK  K  +D 
Sbjct: 254 VVVSMYHLRSTIGSRLQAKVTNTQIF---QLQFHTGFIPLDTTVLKFTKPELDA 304


>2jjd_A Receptor-type tyrosine-protein phosphatase epsilon; transmembrane,
           phosphoprotein, alternative splicing, consortium,
           structural, glycoprotein, SGC; 3.20A {Homo sapiens}
          Length = 599

 Score = 24.3 bits (52), Expect = 6.6
 Identities = 10/85 (11%), Positives = 25/85 (29%)

Query: 4   IIQTVKSIIIELFHCIYPSICPIYSRIINLRFCLCGHCWSKIHFITATEHILKNNKDNID 63
           + + V  I  +    +   +   +     L + L G     +  +      +     + D
Sbjct: 258 VFEFVSRIRNQRPQMVQTDMQYTFIYQALLEYYLYGDTELDVSSLEKHLQTMHGTTTHFD 317

Query: 64  KDPLKSMQKDLPLTQIRSVTLYCDM 88
           K  L+   + L   +I    +    
Sbjct: 318 KIGLEEEFRKLTNVRIMKENMRTGN 342


>1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase;
           rossmann fold, protein-small molecule complex; HET: SAH
           SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35
          Length = 359

 Score = 24.1 bits (52), Expect = 7.4
 Identities = 8/51 (15%), Positives = 20/51 (39%), Gaps = 2/51 (3%)

Query: 14  ELFHCIYPSICP--IYSRIINLRFCLCGHCWSKIHFITATEHILKNNKDNI 62
           ++    + +  P   Y R+         H    + +++     +++NK NI
Sbjct: 116 DVDGVCFINGVPGSFYGRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNI 166


>3hp0_A Putative polyketide biosynthesis enoyl-COA hydratase homolog PKSH;
           polyketide synthase, enoyl COA hydratase,isomerase;
           2.32A {Bacillus subtilis}
          Length = 267

 Score = 24.4 bits (52), Expect = 7.7
 Identities = 6/40 (15%), Positives = 13/40 (32%)

Query: 11  IIIELFHCIYPSICPIYSRIINLRFCLCGHCWSKIHFITA 50
           + ++L    Y +I  +  ++              I   TA
Sbjct: 92  LWMKLQTGPYVTISHVRGKVNAGGLGFVSATDIAIADQTA 131


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.332    0.142    0.462 

Gapped
Lambda     K      H
   0.267   0.0534    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 1,060,870
Number of extensions: 41917
Number of successful extensions: 120
Number of sequences better than 10.0: 1
Number of HSP's gapped: 119
Number of HSP's successfully gapped: 11
Length of query: 119
Length of database: 5,693,230
Length adjustment: 80
Effective length of query: 39
Effective length of database: 3,753,710
Effective search space: 146394690
Effective search space used: 146394690
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 50 (23.5 bits)