HHsearch alignment for GI: 254780311 and conserved domain: COG1999
>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only].
Probab=96.94 E-value=0.015 Score=33.83 Aligned_cols=141 Identities=16% Similarity=0.128 Sum_probs=80.4
Q ss_pred CCCCCCCCCCEEHHHHHCCCEEEEEEECCCCCCCCCHHHCHHHHHHHHHHH-HHCCCE-EEEEECC----CCHHHHHHHC
Q ss_conf 840368884023589838974999982288787410010104653112455-310110-2343035----4011366522
Q gi|254780311|r 21 DGSKAFQWKDVNTQDLFAGKRVFLFALPGAFTPTCSDHQLPGFEKIYDDLR-CEGIEE-VYCLSVN----DAFVMNAWGK 94 (177)
Q Consensus 21 d~tl~~~~~~~~~~d~f~gKkVvL~~~P~AfTp~Ct~~~~~~~~~~~~~~~-~~~~~~-i~~~s~~----d~~~~~aw~~ 94 (177)
T Consensus 49 ~f~l~d~~G~~~~~~~l~Gk~~lv~FgyT~CpdVCP~~-l~~l~~~~~~l~~~~~~~v~vv~itvDPerDtp~~lk~Y~~ 127 (207)
T COG1999 49 DFELTDQDGKPFTLKDLKGKPSLVFFGYTHCPDVCPTT-LAELKALLKKLGEGEGDDVQVVFITVDPERDTPEVLKKYAE 127 (207)
T ss_pred CEEEECCCCCEEECCCCCCCEEEEEEECCCCCCCCHHH-HHHHHHHHHHHCCCCCCCEEEEEEEECCCCCCHHHHHHHHC
T ss_conf 65788689988612356798899997556789747579-99999999973643478489999987999998999999732
Q ss_pred -CCCC--CEEEEEECCCHHHHHHHHCCC---CCCCCCCCEEEE-EEEEEEC-CCEEEEEEECCCCCCCCCCCCCCCCCHH
Q ss_conf -3587--527861036715433320022---476543441001-5999987-9969999974887778777773248999
Q gi|254780311|r 95 -KLEI--KNVKLLPDGSGEFTRKMGMLV---YKDNVGFGLRSW-RYGALIK-DMVVESWFVEEGFSDNCATDPYEISSPE 166 (177)
Q Consensus 95 -~~~~--~~~~~l~D~~~~~~~~~g~~~---~~~~~g~g~rs~-R~a~Ii~-dG~I~~~~~E~~~~~~~~~d~~~vs~ae 166 (177)
T Consensus 128 ~~~~~~~~~ltg~~~~~~~~~k~~~V~~~~v~~~~~~~y~~~Hs~~~~lid~~G~~~~~~~~~-------------~~~~ 194 (207)
T COG1999 128 LNFDPRWIGLTGTPEQIEEVAKAYGVFYSKVPLDDSQNYTIDHSAGFYLIDADGRFLGTYDYG-------------EPPE 194 (207)
T ss_pred CCCCCCEEEEECCHHHHHHHHHHHCEEEEEECCCCCCCCEEECCEEEEEECCCCEEEEEECCC-------------CCHH
T ss_conf 168888626508988999999961614565124777762241440699988998299984589-------------9869
Q ss_pred HHHHHHHHH
Q ss_conf 999999861
Q gi|254780311|r 167 NVLKVIRES 175 (177)
Q Consensus 167 ~iL~~Lk~~ 175 (177)
T Consensus 195 ~i~~~l~~l 203 (207)
T COG1999 195 EIAADLKKL 203 (207)
T ss_pred HHHHHHHHH
T ss_conf 999999998