HHsearch alignment for GI: 254780311 and conserved domain: TIGR02661
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD; InterPro: IPR013478 MauD appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulphide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulphide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded .; GO: 0030416 methylamine metabolic process.
Probab=96.97 E-value=0.004 Score=36.87 Aligned_cols=132 Identities=20% Similarity=0.193 Sum_probs=86.2
Q ss_pred ECCCCCCCCCCCCC-CCEEHHHHHCCCEEEEEEECCCCCCCCCHHHCHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHH
Q ss_conf 36706884036888-40235898389749999822887874100101046531124553101102343035401136652
Q gi|254780311|r 15 VATVLPDGSKAFQW-KDVNTQDLFAGKRVFLFALPGAFTPTCSDHQLPGFEKIYDDLRCEGIEEVYCLSVNDAFVMNAWG 93 (177)
Q Consensus 15 vGd~~Pd~tl~~~~-~~~~~~d~f~gKkVvL~~~P~AfTp~Ct~~~~~~~~~~~~~~~~~~~~~i~~~s~~d~~~~~aw~ 93 (177)
T Consensus 48 vG~~aP~F~l~~f~G~~V~iG~~~a~~R~~LLMFTaPsCPvC~K-L~PiIkSia~~---E~~-~Vv~ISDG~~~EHr~FL 122 (189)
T TIGR02661 48 VGDAAPIFNLPDFDGEPVRIGGSIALGRPTLLMFTAPSCPVCDK-LLPIIKSIARA---EEI-DVVLISDGTPEEHRRFL 122 (189)
T ss_pred CCCCCCEECCCCCCCCEEEECCCCCCCCCEEEEECCCCCCHHHH-HHHHHHHHHHH---HCC-CEEEEECCCCHHHHHHH
T ss_conf 45558710576667864561175567775035443888853224-32789888867---253-25897279927999886
Q ss_pred CCCCCCEEEEEECCCHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 23587527861036715433320022476543441001599998799699999748877787777732489999999998
Q gi|254780311|r 94 KKLEIKNVKLLPDGSGEFTRKMGMLVYKDNVGFGLRSWRYGALIKDMVVESWFVEEGFSDNCATDPYEISSPENVLKVIR 173 (177)
Q Consensus 94 ~~~~~~~~~~l~D~~~~~~~~~g~~~~~~~~g~g~rs~R~a~Ii~dG~I~~~~~E~~~~~~~~~d~~~vs~ae~iL~~Lk 173 (177)
T Consensus 123 ~~H~L~~~~YVV------SAE~GM~fQV~KiPYG------VLLD~~G~I~AKG----L~NTR-------EHlESLlEa~r 179 (189)
T TIGR02661 123 KDHELGEERYVV------SAEIGMAFQVGKIPYG------VLLDQDGVIRAKG----LTNTR-------EHLESLLEADR 179 (189)
T ss_pred HCCCCCCEEEEE------EECCCCCCCCCCCCCE------EEECCCCEEEECC----CCCHH-------HHHHHHHHHCC
T ss_conf 428888713788------6202210011225622------5667997477426----76438-------88999886200
Q ss_pred H
Q ss_conf 6
Q gi|254780311|r 174 E 174 (177)
Q Consensus 174 ~ 174 (177)
T Consensus 180 ~ 180 (189)
T TIGR02661 180 E 180 (189)
T ss_pred C
T ss_conf 3