HHsearch alignment for GI: 254780311 and conserved domain: cd03010
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=98.72 E-value=1.3e-07 Score=60.99 Aligned_cols=113 Identities=19% Similarity=0.233 Sum_probs=77.9
Q ss_pred CCCCCCCCCCCC---CCEEHHHHHCCCEEEEEEECCCCCCCCCHHHCHHHHHHHHHHHHHCCCEEEEEECC-CCHHHHHH
Q ss_conf 706884036888---40235898389749999822887874100101046531124553101102343035-40113665
Q gi|254780311|r 17 TVLPDGSKAFQW---KDVNTQDLFAGKRVFLFALPGAFTPTCSDHQLPGFEKIYDDLRCEGIEEVYCLSVN-DAFVMNAW 92 (177)
Q Consensus 17 d~~Pd~tl~~~~---~~~~~~d~f~gKkVvL~~~P~AfTp~Ct~~~~~~~~~~~~~~~~~~~~~i~~~s~~-d~~~~~aw 92 (177)
T Consensus 1 kpAP~f~l~~ldG~~~~ls~~d-~kGk~vvl~FW-AtWC~pC~~e~-P~l~~l~---~~~~~-~vv~v~~~d~~~~~~~~ 73 (127)
T cd03010 1 KPAPAFSLPALPGPDKTLTSAD-LKGKPYLLNVW-ASWCAPCREEH-PVLMALA---RQGRV-PIYGINYKDNPENALAW 73 (127)
T ss_pred CCCCCEECCCCCCCCEEECHHH-HCCCEEEEEEE-CCCCHHHHHHC-CHHHHHH---HCCCE-EEEEEECCCCHHHHHHH
T ss_conf 9899627117789952856999-29998999999-89586688868-1078884---25835-89986347899999999
Q ss_pred HCCCCCCEEEEEECCCHHHHHHHHCCCCCCCCCCCEEEEEEEEEE-CCCEEEEEEE
Q ss_conf 223587527861036715433320022476543441001599998-7996999997
Q gi|254780311|r 93 GKKLEIKNVKLLPDGSGEFTRKMGMLVYKDNVGFGLRSWRYGALI-KDMVVESWFV 147 (177)
Q Consensus 93 ~~~~~~~~~~~l~D~~~~~~~~~g~~~~~~~~g~g~rs~R~a~Ii-~dG~I~~~~~ 147 (177)
T Consensus 74 ~~~~~~~~~~~~~D~~~~~~~~~~v~------~~-----Ptt~liD~~G~I~~~~~ 118 (127)
T cd03010 74 LARHGNPYAAVGFDPDGRVGIDLGVY------GV-----PETFLIDGDGIIRYKHV 118 (127)
T ss_pred HHHHCCCCCEEEECCCCCHHHHCCCC------CC-----CCEEEEECCCEEEEEEE
T ss_conf 99839986447755886322307855------47-----81999919997999998