HHsearch alignment for GI: 254780311 and conserved domain: pfam02630
>pfam02630 SCO1-SenC SCO1/SenC. This family is involved in biogenesis of respiratory and photosynthetic systems. SCO1 is required for a post-translational step in the accumulation of subunits COXI and COXII of cytochrome c oxidase. SenC is required for optimal cytochrome c oxidase activity and maximal induction of genes encoding the light-harvesting and reaction centre complexes of R. capsulatus.
Probab=97.71 E-value=0.00026 Score=43.24 Aligned_cols=125 Identities=14% Similarity=0.108 Sum_probs=77.0
Q ss_pred CCCCCCCCCCC-EEHHHHHCCCEEEEEEECCCCCCCCCHHHCHHHHHHHHHHHHHCC-CEEEEEECC----CCHHHHHHH
Q ss_conf 88403688840-235898389749999822887874100101046531124553101-102343035----401136652
Q gi|254780311|r 20 PDGSKAFQWKD-VNTQDLFAGKRVFLFALPGAFTPTCSDHQLPGFEKIYDDLRCEGI-EEVYCLSVN----DAFVMNAWG 93 (177)
Q Consensus 20 Pd~tl~~~~~~-~~~~d~f~gKkVvL~~~P~AfTp~Ct~~~~~~~~~~~~~~~~~~~-~~i~~~s~~----d~~~~~aw~ 93 (177)
T Consensus 18 g~F~L~dq~G~~~t~~~-l~Gk~~lv~FgfT~CpdiCP~~-~~~l~~~~~~l~~~~~~v~~v~iTvDPerDTpe~L~~Y~ 95 (159)
T pfam02630 18 GPFTLIDQNGKNFTSEN-LKGKLSLIYFGFTNCPDICPPA-LDRLTDIIKKLKAENIDVQPVFISVDPERDTPKVLKEYL 95 (159)
T ss_pred CCEEEEECCCCEECHHH-HCCCEEEEEEECCCCCCCCHHH-HHHHHHHHHHHHHCCCCEEEEEEEECCCCCCHHHHHHHH
T ss_conf 98289828999976799-5998899999888999645899-999999999853047755999999624889999999999
Q ss_pred CCCCCC--EEEEEECCCHHHHHHHHCCCCCC----CCC--CCEEEEEEEEEECCCEEEEEE
Q ss_conf 235875--27861036715433320022476----543--441001599998799699999
Q gi|254780311|r 94 KKLEIK--NVKLLPDGSGEFTRKMGMLVYKD----NVG--FGLRSWRYGALIKDMVVESWF 146 (177)
Q Consensus 94 ~~~~~~--~~~~l~D~~~~~~~~~g~~~~~~----~~g--~g~rs~R~a~Ii~dG~I~~~~ 146 (177)
T Consensus 96 ~~f~~~~~~ltg~~~~i~~l~~~~~v~~~~~~~~~~~~~y~v~Hs~~~~LiD~~G~i~~~y 156 (159)
T pfam02630 96 KNFHPSFIGLTGTTDEIKSVAKKFKVFYSKVIVDKPEQDYLVDHSSFFYLIDPDGKILKHY 156 (159)
T ss_pred HHCCCCCCEEECCHHHHHHHHHHHCCEEEECCCCCCCCCCEEECCCEEEEECCCCCEEEEC
T ss_conf 9729985534899999999999718608964656899885475577799996999897451