RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddA
21,609 sequences; 6,263,737 total letters
Searching..................................................done
Query= gi|254780311|ref|YP_003064724.1| hypothetical protein
CLIBASIA_00980 [Candidatus Liberibacter asiaticus str. psy62]
(177 letters)
>gnl|CDD|31022 COG0678, AHP1, Peroxiredoxin [Posttranslational modification,
protein turnover, chaperones].
Length = 165
Score = 198 bits (506), Expect = 5e-52
Identities = 82/166 (49%), Positives = 112/166 (67%), Gaps = 12/166 (7%)
Query: 6 IPQVVFHMRVATVLPDGSKAFQWKDVNTQDLFAGKRVFLFALPGAFTPTCSDHQLPGFEK 65
+P V F RV DG W DV T DLF GK+V LF+LPGAFTPTCS LPG+ +
Sbjct: 9 LPAVTFKTRVGDETADG-----WVDVTTDDLFKGKKVVLFSLPGAFTPTCSSSHLPGYLE 63
Query: 66 IYDDLRCEGIEEVYCLSVNDAFVMNAWGKKLEIK-NVKLLPDGSGEFTRKMGMLVYKDNV 124
+ D+ + +G++E+YC+SVNDAFVMNAW K + N+K +PDG+GEFT+ MGMLV K ++
Sbjct: 64 LADEFKAKGVDEIYCVSVNDAFVMNAWAKSQGGEGNIKFIPDGNGEFTKAMGMLVDKSDL 123
Query: 125 GFGLRSWRYGALIKDMVVESWFVEEGFSDNCATDPYEISSPENVLK 170
GFG+RSWRY ++++ VVE F+E DP+ +SS + +L
Sbjct: 124 GFGVRSWRYSMVVENGVVEKLFIEP------PGDPFTVSSADTMLA 163
>gnl|CDD|48562 cd03013, PRX5_like, Peroxiredoxin (PRX) family, PRX5-like
subfamily; members are similar to the human protein,
PRX5, a homodimeric TRX peroxidase, widely expressed in
tissues and found cellularly in mitochondria,
peroxisomes and the cytosol. The cellular location of
PRX5 suggests that it may have an important antioxidant
role in organelles that are major sources of reactive
oxygen species (ROS), as well as a role in the control
of signal transduction. PRX5 has been shown to reduce
hydrogen peroxide, alkyl hydroperoxides and
peroxynitrite. As with all other PRXs, the N-terminal
peroxidatic cysteine of PRX5 is oxidized into a sulfenic
acid intermediate upon reaction with peroxides. Human
PRX5 is able to resolve this intermediate by forming an
intramolecular disulfide bond with its C-terminal
cysteine (the resolving cysteine), which can then be
reduced by TRX, just like an atypical 2-cys PRX. This
resolving cysteine, however, is not conserved in other
members of the subfamily. In such cases, it is assumed
that the oxidized cysteine is directly resolved by an
external small-molecule or protein reductant, typical of
a 1-cys PRX. In the case of the H. influenza PRX5
hybrid, the resolving glutaredoxin domain is on the same
protein chain as PRX. PRX5 homodimers show an A-type
interface, similar to atypical 2-cys PRXs..
Length = 155
Score = 171 bits (434), Expect = 1e-43
Identities = 70/157 (44%), Positives = 97/157 (61%), Gaps = 11/157 (7%)
Query: 19 LPDGSKAFQ----WKDVNTQDLFAGKRVFLFALPGAFTPTCSDHQLPGFEKIYDDLRCEG 74
LP+ + VN +LF GK+V +F +PGAFTPTCS LPG+ + D+L+ +G
Sbjct: 5 LPNVTLFEYVPGPPNPVNLSELFKGKKVVIFGVPGAFTPTCSAQHLPGYVENADELKAKG 64
Query: 75 IEEVYCLSVNDAFVMNAWGKKLEIKN-VKLLPDGSGEFTRKMGMLVYKDNVGFGLRSWRY 133
++EV C+SVND FVM AWGK L K+ ++ L DG+GEFT+ +G+ + G G+RS RY
Sbjct: 65 VDEVICVSVNDPFVMKAWGKALGAKDKIRFLADGNGEFTKALGLTLDLSAAGGGIRSKRY 124
Query: 134 GALIKDMVVESWFVEEGFSDNCATDPYEISSPENVLK 170
++ D V+ FVEE D E+SS ENVLK
Sbjct: 125 ALIVDDGKVKYLFVEEDPGD------VEVSSAENVLK 155
>gnl|CDD|35761 KOG0541, KOG0541, KOG0541, Alkyl hydroperoxide
reductase/peroxiredoxin [Posttranslational modification,
protein turnover, chaperones].
Length = 171
Score = 130 bits (327), Expect = 3e-31
Identities = 62/157 (39%), Positives = 96/157 (61%), Gaps = 7/157 (4%)
Query: 17 TVLPDGSKAFQWKDVNTQDLFAGKRVFLFALPGAFTPTCSDHQLPGFEKIYDDLRCEGIE 76
++ D + Q VN LF GK+V LF +PGAFTPTCS +PG+ + D+L+ +G++
Sbjct: 21 SLFEDEPEQLQGNTVNVSSLFKGKKVILFGVPGAFTPTCSSSHVPGYIEKADELKSKGVD 80
Query: 77 EVYCLSVNDAFVMNAWGKKL-EIKNVKLLPDGSGEFTRKMGMLVYKDNVGFGLRSWRYGA 135
E+ C+SVND FVM AW K L +VK + D +GEFT+ +G+ + + G+RS RY
Sbjct: 81 EIICVSVNDPFVMKAWAKSLGANDHVKFVADPAGEFTKSLGLELDLSDKLLGVRSRRYAL 140
Query: 136 LIKDMVVESWFVEEGFSDNCATDPYEISSPENVLKVI 172
++++ V VEEG +D + +SS E++LK +
Sbjct: 141 VVENGKVTVVNVEEGGTD------FTVSSAEDILKQL 171
>gnl|CDD|48520 cd02971, PRX_family, Peroxiredoxin (PRX) family; composed of the
different classes of PRXs including many proteins
originally known as bacterioferritin comigratory
proteins (BCP), based on their electrophoretic mobility
before their function was identified. PRXs are
thiol-specific antioxidant (TSA) proteins also known as
TRX peroxidases and alkyl hydroperoxide reductase C22
(AhpC) proteins. They confer a protective antioxidant
role in cells through their peroxidase activity in which
hydrogen peroxide, peroxynitrate, and organic
hydroperoxides are reduced and detoxified using reducing
equivalents derived from either TRX, glutathione,
trypanothione and AhpF. They are distinct from other
peroxidases in that they have no cofactors such as
metals or prosthetic groups. The first step of
catalysis, common to all PRXs, is the nucleophilic
attack by the catalytic cysteine (also known as the
peroxidatic cysteine) on the peroxide leading to
cleavage of the oxygen-oxygen bond and the formation of
a cysteine sulfenic acid intermediate. The second step
of the reaction, the resolution of the intermediate,
distinguishes the different types of PRXs. The presence
or absence of a second cysteine (the resolving cysteine)
classifies PRXs as either belonging to the 2-cys or
1-cys type. The resolving cysteine of 2-cys PRXs is
either on the same chain (atypical) or on the second
chain (typical) of a functional homodimer. Structural
and motif analysis of this growing family supports the
need for a new classification system. The peroxidase
activity of PRXs is regulated in vivo by irreversible
cysteine over-oxidation into a sulfinic acid,
phosphorylation and limited proteolysis..
Length = 140
Score = 94.1 bits (234), Expect = 2e-20
Identities = 39/135 (28%), Positives = 57/135 (42%), Gaps = 8/135 (5%)
Query: 19 LPDGS-KAFQWKDVNTQDLFAGKRVFLFALPGAFTPTCSDHQLPGFEKIYDDLRCEGIEE 77
PD + A +V+ D F GK V LF P FTP C+ +L F + ++ +G E
Sbjct: 2 APDFTLPATDGGEVSLSD-FKGKWVVLFFYPKDFTPVCT-TELCAFRDLAEEFA-KGGAE 58
Query: 78 VYCLSVNDAFVMNAWGKKLEIKNVKLLPDGSGEFTRKMGMLVYKDNVGFGLRSWRYGALI 137
V +SV+ F AW +K N LL D GEF + G+L + G + R +I
Sbjct: 59 VLGVSVDSPFSHKAWAEKEGGLNFPLLSDPDGEFAKAYGVL--IEKSAGGGLAARATFII 116
Query: 138 KDM--VVESWFVEEG 150
+
Sbjct: 117 DPDGKIRYVEVEPLP 131
>gnl|CDD|144244 pfam00578, AhpC-TSA, AhpC/TSA family. This family contains
proteins related to alkyl hydroperoxide reductase (AhpC)
and thiol specific antioxidant (TSA).
Length = 124
Score = 60.7 bits (148), Expect = 2e-10
Identities = 34/107 (31%), Positives = 51/107 (47%), Gaps = 6/107 (5%)
Query: 24 KAFQWKDVNTQDLFAGKRVFLFALPGAFTPTCSDHQLPGFEKIYDDLRCEGIEEVYCLSV 83
K+V+ D + GK V LF P FTP C+ +LP +Y++ + G+ EV +SV
Sbjct: 11 PDLDGKEVSLSD-YKGKWVVLFFYPKDFTPVCT-TELPALADLYEEFKKLGV-EVLGVSV 67
Query: 84 NDAFVMNAWGKKLEIKNVKLLPDGSGEFTRKMGMLVYKDNVGFGLRS 130
+ + +KL + LL D GE R G V + G LR+
Sbjct: 68 DSPESHKKFAEKLGL-PFPLLSDPDGEVARAYG--VLNEEAGGALRT 111
>gnl|CDD|30799 COG0450, AhpC, Peroxiredoxin [Posttranslational modification,
protein turnover, chaperones].
Length = 194
Score = 52.1 bits (125), Expect = 7e-08
Identities = 27/88 (30%), Positives = 40/88 (45%), Gaps = 8/88 (9%)
Query: 37 FAGKRVFLFALPGAFTPTCSDHQLPGFEKIYDDLRCEGIEEVYCLSVNDAFVMNAW---- 92
+ GK V LF P FT C + F K Y++ + G+ EV +S + F AW
Sbjct: 31 YYGKWVVLFFYPADFTFVCPTE-IIAFAKRYEEFQKRGV-EVIGVSTDSVFSHKAWKATI 88
Query: 93 GKKLEIKNVK--LLPDGSGEFTRKMGML 118
+ I +K ++ D GE R G+L
Sbjct: 89 REAGGIGKIKFPMIADPKGEIARAYGVL 116
>gnl|CDD|48567 cd03018, PRX_AhpE_like, Peroxiredoxin (PRX) family, AhpE-like
subfamily; composed of proteins similar to Mycobacterium
tuberculosis AhpE. AhpE is described as a 1-cys PRX
because of the absence of a resolving cysteine. The
structure and sequence of AhpE, however, show greater
similarity to 2-cys PRXs than 1-cys PRXs. PRXs are
thiol-specific antioxidant (TSA) proteins that confer a
protective role in cells through their peroxidase
activity in which hydrogen peroxide, peroxynitrate, and
organic hydroperoxides are reduced and detoxified using
reducing equivalents derived from either thioredoxin,
glutathione, trypanothione and AhpF. The first step of
catalysis is the nucleophilic attack by the peroxidatic
cysteine on the peroxide leading to the formation of a
cysteine sulfenic acid intermediate. The absence of a
resolving cysteine suggests that functional AhpE is
regenerated by an external reductant. The solution
behavior and crystal structure of AhpE show that it
forms dimers and octamers..
Length = 149
Score = 47.9 bits (114), Expect = 2e-06
Identities = 28/104 (26%), Positives = 46/104 (44%), Gaps = 7/104 (6%)
Query: 29 KDVNTQDLFAGKRVFLFALPGAFTPTCSDHQLPGFEKIYDDLRCEGIEEVYCLSVNDAFV 88
++V + K V L P AFTP C+ +L + G EV +SV+ F
Sbjct: 18 QEVRLSEFRGRKPVVLVFFPLAFTPVCTK-ELCALRDSLELFEAAGA-EVLGISVDSPFS 75
Query: 89 MNAWGKKLEIKNVKLLPD--GSGEFTRKMGMLVYKDNVGFGLRS 130
+ AW ++ + LL D GE + G V+ +++G R+
Sbjct: 76 LRAWAEENGL-TFPLLSDFWPHGEVAKAYG--VFDEDLGVAERA 116
>gnl|CDD|48564 cd03015, PRX_Typ2cys, Peroxiredoxin (PRX) family, Typical 2-Cys PRX
subfamily; PRXs are thiol-specific antioxidant (TSA)
proteins, which confer a protective role in cells
through its peroxidase activity by reducing hydrogen
peroxide, peroxynitrite, and organic hydroperoxides. The
functional unit of typical 2-cys PRX is a homodimer. A
unique intermolecular redox-active disulfide center is
utilized for its activity. Upon reaction with peroxides,
its peroxidatic cysteine is oxidized into a sulfenic
acid intermediate which is resolved by bonding with the
resolving cysteine from the other subunit of the
homodimer. This intermolecular disulfide bond is then
reduced by thioredoxin, tryparedoxin or AhpF. Typical
2-cys PRXs, like 1-cys PRXs, form decamers which are
stabilized by reduction of the active site cysteine.
Typical 2-cys PRX interacts through beta strands at one
edge of the monomer (B-type interface) to form the
functional homodimer, and uses an A-type interface
(similar to the dimeric interface in atypical 2-cys PRX
and PRX5) at the opposite end of the monomer to form the
stable decameric (pentamer of dimers) structure..
Length = 173
Score = 43.9 bits (104), Expect = 2e-05
Identities = 32/120 (26%), Positives = 53/120 (44%), Gaps = 15/120 (12%)
Query: 17 TVLPDGSKAFQWKDVNTQDLFAGKRVFLFALPGAFTPTCSDHQLPGFEKIYDDLRCEGIE 76
V+P+G ++K+++ D + GK V LF P FT C ++ F Y++ + E
Sbjct: 12 AVVPNG----EFKEISLSD-YKGKWVVLFFYPLDFTFVCPT-EIIAFSDRYEEFKKLNAE 65
Query: 77 EVYCLSVNDAFVMNAWG----KKLEIKNVK--LLPDGSGEFTRKMGMLVYKDNVGFGLRS 130
V +S + F AW K+ + + LL D + +R G V + G LR
Sbjct: 66 -VLGVSTDSHFSHLAWRNTPRKEGGLGKINFPLLADPKKKISRDYG--VLDEEEGVALRG 122
>gnl|CDD|48563 cd03014, PRX_Atyp2cys, Peroxiredoxin (PRX) family, Atypical 2-cys
PRX subfamily; composed of PRXs containing peroxidatic
and resolving cysteines, similar to the homodimeric
thiol specific antioxidant (TSA) protein also known as
TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial
periplasmic peroxidase which differs from other PRXs in
that it shows substrate specificity toward alkyl
hydroperoxides over hydrogen peroxide. As with all other
PRXs, the peroxidatic cysteine (N-terminal) of Tpx is
oxidized into a sulfenic acid intermediate upon reaction
with peroxides. Tpx is able to resolve this intermediate
by forming an intramolecular disulfide bond with a
conserved C-terminal cysteine (the resolving cysteine),
which can then be reduced by thioredoxin. This differs
from the typical 2-cys PRX which resolves the oxidized
cysteine by forming an intermolecular disulfide bond
with the resolving cysteine from the other subunit of
the homodimer. Atypical 2-cys PRX homodimers have a
loop-based interface (A-type for alternate), in contrast
with the B-type interface of typical 2-cys and 1-cys
PRXs..
Length = 143
Score = 42.8 bits (101), Expect = 4e-05
Identities = 27/103 (26%), Positives = 40/103 (38%), Gaps = 8/103 (7%)
Query: 29 KDVNTQDLFAGKRVFLFALPGAFTPTCSDHQLPGFEKIYDDLRCEGIEEVYCLSVNDAFV 88
+V+ D FAGK + P TP C Q F K L + V +S + F
Sbjct: 17 SEVSLAD-FAGKVKVISVFPSIDTPVC-ATQTKRFNKEAAKL--DNTV-VLTISADLPFA 71
Query: 89 MNAWGKKLEIKNVKLLPD-GSGEFTRKMGMLVYKDNVGFGLRS 130
W + NV L D F + G+L+ ++G R+
Sbjct: 72 QKRWCGAEGVDNVTTLSDFRDHSFGKAYGVLI--KDLGLLARA 112
>gnl|CDD|31418 COG1225, Bcp, Peroxiredoxin [Posttranslational modification,
protein turnover, chaperones].
Length = 157
Score = 42.5 bits (100), Expect = 7e-05
Identities = 22/89 (24%), Positives = 34/89 (38%), Gaps = 3/89 (3%)
Query: 37 FAGKRVFLFALPGAFTPTCSDHQLPGFEKIYDDLRCEGIEEVYCLSVNDAFVMNAWGKKL 96
GK V L+ P FTP C+ + F + ++ G V +S + + +K
Sbjct: 28 LRGKPVVLYFYPKDFTPGCTT-EACDFRDLLEEFEKLGA-VVLGISPDSPKSHKKFAEKH 85
Query: 97 EIKNVKLLPDGSGEFTRKMGMLVYKDNVG 125
+ LL D GE G+ K G
Sbjct: 86 GL-TFPLLSDEDGEVAEAYGVWGEKKMYG 113
>gnl|CDD|48566 cd03017, PRX_BCP, Peroxiredoxin (PRX) family, Bacterioferritin
comigratory protein (BCP) subfamily; composed of
thioredoxin-dependent thiol peroxidases, widely
expressed in pathogenic bacteria, that protect cells
against toxicity from reactive oxygen species by
reducing and detoxifying hydroperoxides. The protein was
named BCP based on its electrophoretic mobility before
its function was known. BCP shows substrate selectivity
toward fatty acid hydroperoxides rather than hydrogen
peroxide or alkyl hydroperoxides. BCP contains the
peroxidatic cysteine but appears not to possess a
resolving cysteine (some sequences, not all, contain a
second cysteine but its role is still unknown). Unlike
other PRXs, BCP exists as a monomer. The plant homolog
of BCP is PRX Q, which is expressed only in leaves and
is cellularly localized in the chloroplasts and the
guard cells of stomata. Also included in this subfamily
is the fungal nuclear protein, Dot5p (for disrupter of
telomere silencing protein 5), which functions as an
alkyl-hydroperoxide reductase during post-diauxic
growth..
Length = 140
Score = 40.9 bits (96), Expect = 2e-04
Identities = 21/93 (22%), Positives = 37/93 (39%), Gaps = 3/93 (3%)
Query: 37 FAGKRVFLFALPGAFTPTCSDHQLPGFEKIYDDLRCEGIEEVYCLSVNDAFVMNAWGKKL 96
GK V L+ P TP C+ + F +Y++ + G V +S + + +K
Sbjct: 21 LRGKPVVLYFYPKDDTPGCT-KEACDFRDLYEEFKALGA-VVIGVSPDSVESHAKFAEKY 78
Query: 97 EIKNVKLLPDGSGEFTRKMGMLVYKDNVGFGLR 129
+ LL D G+ + G+ K G+
Sbjct: 79 GL-PFPLLSDPDGKLAKAYGVWGEKKKKYMGIE 110
>gnl|CDD|48565 cd03016, PRX_1cys, Peroxiredoxin (PRX) family, 1-cys PRX subfamily;
composed of PRXs containing only one conserved cysteine,
which serves as the peroxidatic cysteine. They are
homodimeric thiol-specific antioxidant (TSA) proteins
that confer a protective role in cells by reducing and
detoxifying hydrogen peroxide, peroxynitrite, and
organic hydroperoxides. As with all other PRXs, a
cysteine sulfenic acid intermediate is formed upon
reaction of 1-cys PRX with its substrates. Having no
resolving cysteine, the oxidized enzyme is resolved by
an external small-molecule or protein reductant such as
thioredoxin or glutaredoxin. Similar to typical 2-cys
PRX, 1-cys PRX forms a functional dimeric unit with a
B-type interface, as well as a decameric structure which
is stabilized in the reduced form of the enzyme. Other
oligomeric forms, tetramers and hexamers, have also been
reported. Mammalian 1-cys PRX is localized cellularly in
the cytosol and is expressed at high levels in brain,
eye, testes and lung. The seed-specific plant 1-cys PRXs
protect tissues from reactive oxygen species during
desiccation and are also called rehydrins..
Length = 203
Score = 40.1 bits (94), Expect = 3e-04
Identities = 22/101 (21%), Positives = 40/101 (39%), Gaps = 7/101 (6%)
Query: 35 DLFAGKRVFLFALPGAFTPTCSDHQLPGFEKIYDDLRCEGIEEVYCLSVNDAFVMNAWGK 94
D LF+ P FTP C+ +L F K+ + + + ++ LSV+ W +
Sbjct: 21 DYLGDSWGILFSHPADFTPVCTT-ELGAFAKLAPEFKKRNV-KLIGLSVDSVESHIKWIE 78
Query: 95 KLEIKNVKLLP-----DGSGEFTRKMGMLVYKDNVGFGLRS 130
+E +P D E + +GM+ +R+
Sbjct: 79 DIEEYTGVEIPFPIIADPDREVAKLLGMIDPDAGSTLTVRA 119
>gnl|CDD|36070 KOG0852, KOG0852, KOG0852, Alkyl hydroperoxide reductase, thiol
specific antioxidant and related enzymes
[Posttranslational modification, protein turnover,
chaperones].
Length = 196
Score = 36.1 bits (83), Expect = 0.005
Identities = 38/136 (27%), Positives = 54/136 (39%), Gaps = 18/136 (13%)
Query: 1 MIRFQIPQVVFHMRVATVLPDGSKAFQWKDVNTQDLFAGKRVFLFALPGAFTPTCSDHQL 60
M P F T + DG ++K++ D GK V LF P FT C +
Sbjct: 3 MEVVFKPAPDFK---GTAVVDG----EFKEIKLSDYK-GKYVVLFFYPLDFTFVCPTE-I 53
Query: 61 PGFEKIYDDLRCEGIEEVYCLSVNDAFVMNAW---GKK---LEIKNVKLLPDGSGEFTRK 114
F + R E + S + F AW +K L N+ LL D + E +R
Sbjct: 54 IAFSDRAPEFRKLNTEVLGI-STDSVFSHLAWINTPRKQGGLGPLNIPLLSDLNHEISRD 112
Query: 115 MGMLVYKDNVGFGLRS 130
G+L K++ G LR
Sbjct: 113 YGVL--KEDEGIALRG 126
>gnl|CDD|32260 COG2077, Tpx, Peroxiredoxin [Posttranslational modification,
protein turnover, chaperones].
Length = 158
Score = 32.9 bits (75), Expect = 0.048
Identities = 24/84 (28%), Positives = 35/84 (41%), Gaps = 5/84 (5%)
Query: 37 FAGKRVFLFALPGAFTPTCSDHQLPGFEKIYDDLRCEGIEEVYCLSVNDAFVMNAWGKKL 96
FAGK+ + P TP C Q+ F + L G V C+S++ F +
Sbjct: 42 FAGKKKVISVFPSIDTPVC-ATQVRKFNEEAAKL---GNTVVLCISMDLPFAQKRFCGAE 97
Query: 97 EIKNVKLLPD-GSGEFTRKMGMLV 119
I+NV L D F G+L+
Sbjct: 98 GIENVITLSDFRDRAFGENYGVLI 121
>gnl|CDD|30871 COG0525, ValS, Valyl-tRNA synthetase [Translation, ribosomal
structure and biogenesis].
Length = 877
Score = 27.5 bits (61), Expect = 1.9
Identities = 19/82 (23%), Positives = 34/82 (41%), Gaps = 29/82 (35%)
Query: 92 WGKK--LEIKNV-----KLLPDGSGEFT---------------RKMGMLV----YKDNVG 125
GK+ L + N+ ++ + +GEF + G+LV +K +VG
Sbjct: 282 VGKRHNLPLINIIDEDGRINEEAAGEFAGLDRFEARKKIVEDLEEQGLLVKIEPHKHSVG 341
Query: 126 FGLRSWRYGALIKDMVVESWFV 147
R G I+ ++ + WFV
Sbjct: 342 H---CERCGTPIEPLLSKQWFV 360
>gnl|CDD|35196 COG5637, COG5637, Predicted integral membrane protein [Function
unknown].
Length = 217
Score = 25.8 bits (56), Expect = 6.4
Identities = 14/59 (23%), Positives = 24/59 (40%), Gaps = 11/59 (18%)
Query: 5 QIPQVVFHMRVATVLPD----------GSKAFQWKDVNTQDLFAGKRVFLFALPGAFTP 53
+P + H+ VL D +W+ T+D+ G+R+ +LPGA
Sbjct: 94 NLPLWMKHLDSVKVLDDKRSRWKANAPLGLEVEWEAEITKDI-PGERIQWESLPGARVE 151
Database: CddA
Posted date: Feb 4, 2011 9:38 PM
Number of letters in database: 6,263,737
Number of sequences in database: 21,609
Lambda K H
0.323 0.140 0.436
Gapped
Lambda K H
0.267 0.0805 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 2,285,286
Number of extensions: 118856
Number of successful extensions: 239
Number of sequences better than 10.0: 1
Number of HSP's gapped: 228
Number of HSP's successfully gapped: 19
Length of query: 177
Length of database: 6,263,737
Length adjustment: 88
Effective length of query: 89
Effective length of database: 4,362,145
Effective search space: 388230905
Effective search space used: 388230905
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (24.4 bits)