RPS-BLAST 2.2.22 [Sep-27-2009]
Database: pdb70
24,244 sequences; 5,693,230 total letters
Searching..................................................done
Query= gi|254780311|ref|YP_003064724.1| hypothetical protein
CLIBASIA_00980 [Candidatus Liberibacter asiaticus str. psy62]
(177 letters)
>1nm3_A Protein HI0572; hybrid, peroxiredoxin, glutaredoxin, electron
transport; 2.80A {Haemophilus influenzae} SCOP: c.47.1.1
c.47.1.10
Length = 241
Score = 170 bits (433), Expect = 1e-43
Identities = 72/173 (41%), Positives = 106/173 (61%), Gaps = 13/173 (7%)
Query: 5 QIPQVVFHMRVATVLPDGSKAFQWKDVNTQDLFAGKRVFLFALPGAFTPTCSDHQLPGFE 64
++PQV F R +W DV T +LF K V +F+LPGAFTPTCS LP +
Sbjct: 8 KVPQVTFRTRQGD---------KWVDVTTSELFDNKTVIVFSLPGAFTPTCSSSHLPRYN 58
Query: 65 KIYDDLRCEGIEEVYCLSVNDAFVMNAWGKKLEIKNVKLLPDGSGEFTRKMGMLVYKDNV 124
++ + G++++ +SVND FVMNAW + + +N+ +PDG+GEFT MGMLV K+++
Sbjct: 59 ELAPVFKKYGVDDILVVSVNDTFVMNAWKEDEKSENISFIPDGNGEFTEGMGMLVGKEDL 118
Query: 125 GFGLRSWRYGALIKDMVVESWFVEEGFSDNCATDPYEISSPENVLKVIRESKK 177
GFG RSWRY L+K+ VVE F+E N DP+++S + +LK + +
Sbjct: 119 GFGKRSWRYSMLVKNGVVEKMFIEP----NEPGDPFKVSDADTMLKYLAPQHQ 167
>1xiy_A Peroxiredoxin, pfaop; alpha-aneurysm, thioredoxin fold,
peroxiredoxin fold, oxidoreductase; 1.80A {Plasmodium
falciparum} SCOP: c.47.1.10
Length = 182
Score = 165 bits (419), Expect = 5e-42
Identities = 61/176 (34%), Positives = 102/176 (57%), Gaps = 4/176 (2%)
Query: 5 QIPQVVFHMRVATVLPDGSK---AFQWKDVNTQDLFAGKRVFLFALPGAFTPTCSDHQLP 61
IP V + V + + ++T +LF K++ L +LPGAFTPTCS +P
Sbjct: 6 LIPNVKVMIDVRNMNNISDTDGSPNDFTSIDTHELFNNKKILLISLPGAFTPTCSTKMIP 65
Query: 62 GFEKIYDDLRCEG-IEEVYCLSVNDAFVMNAWGKKLEIKNVKLLPDGSGEFTRKMGMLVY 120
G+E+ YD E +++YC++ ND +V+ +W K ++IK +K + DG+ FT M MLV
Sbjct: 66 GYEEEYDYFIKENNFDDIYCITNNDIYVLKSWFKSMDIKKIKYISDGNSSFTDSMNMLVD 125
Query: 121 KDNVGFGLRSWRYGALIKDMVVESWFVEEGFSDNCATDPYEISSPENVLKVIRESK 176
K N G+R WR+ A++++ ++ F E+ N TDPY+IS+ NV + ++ ++
Sbjct: 126 KSNFFMGMRPWRFVAIVENNILVKMFQEKDKQHNIQTDPYDISTVNNVKEFLKNNQ 181
>2wfc_A Peroxiredoxin 5, PRDX5; oxidoreductase, antioxidant enzymes; 1.75A
{Arenicola marina}
Length = 167
Score = 119 bits (299), Expect = 4e-28
Identities = 53/148 (35%), Positives = 77/148 (52%), Gaps = 7/148 (4%)
Query: 27 QWKDVNTQDLFAGKRVFLFALPGAFTPTCSDHQLPGFEKIYDDLRCEGIEEVYCLSVNDA 86
VN +LFAGK+ LFA+PGAFTP S LPG+ + + +G++ + C++VND+
Sbjct: 19 PNDKVNMAELFAGKKGVLFAVPGAFTPGSSKTHLPGYVEQAAAIHGKGVDIIACMAVNDS 78
Query: 87 FVMNAWGKKLEIK-NVKLLPDGSGEFTRKMGMLVYKDNVGFGLRSWRYGALIKDMVVESW 145
FVM+AWGK V++L D G FT+ + M + V +RS RY +I+D VV
Sbjct: 79 FVMDAWGKAHGADDKVQMLADPGGAFTKAVDMELDLSAVLGNVRSKRYSLVIEDGVVTKV 138
Query: 146 FVEEGFSDNCATDPYEISSPENVLKVIR 173
VE S N+L +
Sbjct: 139 NVEP------DGKGLTCSLAPNILSQLG 160
>1hd2_A Peroxiredoxin 5 residues 54-214; antioxidant enzyme, thioredoxin
peroxidase, thioredoxin fold; 1.5A {Homo sapiens} SCOP:
c.47.1.10 PDB: 1h4o_A 2vl3_A 1oc3_A 2vl2_A 2vl9_A 1urm_A
Length = 161
Score = 116 bits (292), Expect = 2e-27
Identities = 52/165 (31%), Positives = 84/165 (50%), Gaps = 11/165 (6%)
Query: 13 MRVATVLPDGS--KAFQWKDVNTQDLFAGKRVFLFALPGAFTPTCSDHQLPGFEKIYDDL 70
++V +P + VN +LF GK+ LF +PGAFTP CS LPGF + + L
Sbjct: 3 IKVGDAIPAVEVFEGEPGNKVNLAELFKGKKGVLFGVPGAFTPGCSKTHLPGFVEQAEAL 62
Query: 71 RCEGIEEVYCLSVNDAFVMNAWGKKLEIK-NVKLLPDGSGEFTRKMGMLVYKDNVGF--G 127
+ +G++ V CLSVNDAFV WG+ + + V+LL D +G F ++ +L+ V
Sbjct: 63 KAKGVQVVACLSVNDAFVTGEWGRAHKAEGKVRLLADPTGAFGKETDLLLDDSLVSIFGN 122
Query: 128 LRSWRYGALIKDMVVESWFVEEGFSDNCATDPYEISSPENVLKVI 172
R R+ +++D +V++ VE S N++ +
Sbjct: 123 RRLKRFSMVVQDGIVKALNVEP------DGTGLTCSLAPNIISQL 161
>2pwj_A Mitochondrial peroxiredoxin; alpha and beta protein,
oxidoreductase; 2.80A {Pisum sativum}
Length = 171
Score = 116 bits (291), Expect = 3e-27
Identities = 44/158 (27%), Positives = 79/158 (50%), Gaps = 7/158 (4%)
Query: 16 ATVLPDGSKAFQWKDVNTQDLFAGKRVFLFALPGAFTPTCSDHQLPGFEKIYDDLRCEGI 75
D ++ D+F K+V +F LPGA+T CS +P ++ D + +G+
Sbjct: 20 KARTWDEGVESKFSTTPVNDIFKDKKVVIFGLPGAYTGVCSSKHVPPYKHNIDKFKAKGV 79
Query: 76 EEVYCLSVNDAFVMNAWGKKLEIKN-VKLLPDGSGEFTRKMGMLVYKDNVGFGLRSWRYG 134
+ V C+++ND + +NAW +K++ K+ ++ D G F + + + G+RS R+
Sbjct: 80 DSVICVAINDPYTVNAWAEKIQAKDAIEFYGDFDGSFHKSLELTTDLSAGLLGIRSERWS 139
Query: 135 ALIKDMVVESWFVEEGFSDNCATDPYEISSPENVLKVI 172
A + D V++ VEE SD ++S E +L I
Sbjct: 140 AYVVDGKVKALNVEESPSD------VKVSGAETILGQI 171
>3mng_A Peroxiredoxin-5, mitochondrial; peroxidase, PRXV, substrate analog,
DTT, oxidoreductase; 1.45A {Homo sapiens} PDB: 2vl3_A
1oc3_A 2vl2_A 2vl9_A 1urm_A 1hd2_A 1h4o_A
Length = 173
Score = 110 bits (277), Expect = 1e-25
Identities = 51/157 (32%), Positives = 80/157 (50%), Gaps = 11/157 (7%)
Query: 19 LPDGS--KAFQWKDVNTQDLFAGKRVFLFALPGAFTPTCSDHQLPGFEKIYDDLRCEGIE 76
+P + VN +LF GK+ LF +PGAFTP CS LPGF + + L+ +G++
Sbjct: 21 IPAVEVFEGEPGNKVNLAELFKGKKGVLFGVPGAFTPGCSKTHLPGFVEQAEALKAKGVQ 80
Query: 77 EVYCLSVNDAFVMNAWGKKLEIK-NVKLLPDGSGEFTRKMGMLVYKDNVGF--GLRSWRY 133
V CLSVNDAFV WG+ + + V+LL D +G F ++ +L+ V R R+
Sbjct: 81 VVACLSVNDAFVTGEWGRAHKAEGKVRLLADPTGAFGKETDLLLDDSLVSIFGNRRLKRF 140
Query: 134 GALIKDMVVESWFVEEGFSDNCATDPYEISSPENVLK 170
+++D +V++ VE S N++
Sbjct: 141 SMVVQDGIVKALNVEP------DGTGLTCSLAPNIIS 171
>1tp9_A Peroxiredoxin, PRX D (type II); oligomer, thioredoxin fold,
oxidoreductase; 1.62A {Populus trichocarpa} SCOP:
c.47.1.10
Length = 162
Score = 86.9 bits (214), Expect = 2e-18
Identities = 57/147 (38%), Positives = 85/147 (57%), Gaps = 8/147 (5%)
Query: 27 QWKDVNTQDLFAGKRVFLFALPGAFTPTCSDHQLPGFEKIYDDLRCEGIEEVYCLSVNDA 86
Q ++V+ L AGK+V LF +PGAFTPTCS +PGF + +L+ +G+ E+ C+SVND
Sbjct: 23 QLQEVSVHSLVAGKKVILFGVPGAFTPTCSLKHVPGFIEKAGELKSKGVTEILCISVNDP 82
Query: 87 FVMNAWGKKLEIKNV-KLLPDGSGEFTRKMGMLVYKDNVGFGLRSWRYGALIKDMVVESW 145
FVM AW K K L DGS +T +G+ + G G RS R+ L+ D+ V++
Sbjct: 83 FVMKAWAKSYPENKHVKFLADGSATYTHALGLELDLQEKGLGTRSRRFALLVDDLKVKAA 142
Query: 146 FVEEGFSDNCATDPYEISSPENVLKVI 172
+E G + +SS E++LK +
Sbjct: 143 NIEGG-------GEFTVSSAEDILKDL 162
>3ixr_A Bacterioferritin comigratory protein; alpha beta protein,
oxidoreductase; 1.60A {Xylella fastidiosa}
Length = 179
Score = 56.9 bits (137), Expect = 3e-09
Identities = 23/168 (13%), Positives = 47/168 (27%), Gaps = 19/168 (11%)
Query: 12 HMRVATVLPDGSKAF--QWKDVNTQDL--FAGKRVFLFALPGAFTPTCSDHQLPGFEKIY 67
HM + L + L + + + L+ P TP S + F +
Sbjct: 20 HMNIGDTLNHSLLNHPLMLSGSTCKTLSDYTNQWLVLYFYPKDNTPGSST-EGLEFNLLL 78
Query: 68 DDLRCEGIEEVYCLSVNDAFVMNAWGKKLEIKNVKLLPDGSGEFTRKMGMLVYKDNVGFG 127
V +S + +++ K L+ D + ++ K G
Sbjct: 79 PQFEQINA-TVLGVSRDSVKSHDSFCAKQGF-TFPLVSDSDAILCKAFDVIKEKTMYGRQ 136
Query: 128 LRSW-RYGALI-KDMVVESWFVEEGFSDNCATDPYEISSPENVLKVIR 173
+ R LI + + + + E VL ++
Sbjct: 137 VIGIERSTFLIGPTHRIVEAWRQVKVPGH----------AEEVLNKLK 174
>1q98_A Thiol peroxidase, TPX; structural genomics, NYSGXRC, PSI, protein
structure initiative; 1.90A {Haemophilus influenzae}
SCOP: c.47.1.10
Length = 165
Score = 51.6 bits (123), Expect = 1e-07
Identities = 30/142 (21%), Positives = 50/142 (35%), Gaps = 15/142 (10%)
Query: 14 RVATVLPDGS-KAFQWKDVNTQDLFAGKRVFLFALPGAFTPTCSDHQLPGFEKIYDDLRC 72
+V ++ + DV D FA KR L P T C + F + L
Sbjct: 18 QVGEIVENFILVGNDLADVALND-FASKRKVLNIFPSIDTGVC-ATSVRKFNQQAAKL-- 73
Query: 73 EGIEEVYCLSVNDAFVMNAWGKKLEIKNVKLLPD-GSGEFTRKMGMLVY-KDNVGFGLRS 130
V C+S + F + I+N K + + ++G+ + G R+
Sbjct: 74 -SNTIVLCISADLPFAQARFCGAEGIENAKTVSTFRNHALHSQLGVDIQTGPLAGLTSRA 132
Query: 131 WRYGALIKD---MVVESWFVEE 149
++ D V+ S VEE
Sbjct: 133 ----VIVLDEQNNVLHSQLVEE 150
>1n8j_A AHPC, alkyl hydroperoxide reductase C22 protein; peroxiredoxin,
decamer, antioxidant, peroxidase, AHPF, oxidoreductase;
2.17A {Salmonella typhimurium} SCOP: c.47.1.10 PDB:
1yep_A 1yf1_A 1yf0_A 1yex_A 3emp_A
Length = 186
Score = 51.2 bits (122), Expect = 1e-07
Identities = 19/100 (19%), Positives = 38/100 (38%), Gaps = 6/100 (6%)
Query: 27 QWKDVNTQDLFAGKRVFLFALPGAFTPTCSDHQLPGFEKIYDDLRCEGIEEVYCLSVNDA 86
++ +V +D G+ F P FT +L Y++ + +VY +S +
Sbjct: 19 EFIEVTEKD-TEGRWSVFFFYPADFTFVSPT-ELGDVADHYEE-LQKLGVDVYSVSTDTH 75
Query: 87 FVMNAWG---KKLEIKNVKLLPDGSGEFTRKMGMLVYKDN 123
F AW + + ++ D +G TR + +
Sbjct: 76 FTHKAWHSSSETIAKIKYAMIGDPTGALTRNFDNMREDEG 115
>1e2y_A TRYP, tryparedoxin peroxidase; 2-Cys peroxiredoxin, oxidoreductase;
3.2A {Crithidia fasciculata} SCOP: c.47.1.10
Length = 188
Score = 48.9 bits (116), Expect = 7e-07
Identities = 27/122 (22%), Positives = 43/122 (35%), Gaps = 15/122 (12%)
Query: 15 VATVLPDGSKAFQWKDVNTQDLFAGKRVFLFALPGAFTPTCSDHQLPGFEKIYDDLRCEG 74
++P+G+ +K V+ + GK V LF P FT C ++ F E
Sbjct: 17 DMALMPNGT----FKKVSLSS-YKGKYVVLFFYPMDFTFVCP-TEIIQFSDDAKR-FAEI 69
Query: 75 IEEVYCLSVNDAFVMNAWGKKLEIK------NVKLLPDGSGEFTRKMGMLVYKDNVGFGL 128
EV S + + W K + +L D + R G V ++ G
Sbjct: 70 NTEVISCSCDSEYSHLQWTSVDRKKGGLGPMAIPMLADKTKAIARAYG--VLDEDSGVAY 127
Query: 129 RS 130
R
Sbjct: 128 RG 129
>1prx_A HORF6; peroxiredoxin, hydrogen peroxide, redox regulation, cellular
signaling, antioxidant; 2.00A {Homo sapiens} SCOP:
c.47.1.10
Length = 224
Score = 46.9 bits (111), Expect = 2e-06
Identities = 23/125 (18%), Positives = 44/125 (35%), Gaps = 11/125 (8%)
Query: 13 MRVATVLPDGSKAFQWKDVNTQDLFAGKRVFLFALPGAFTPTCSDHQLPGFEKIYDDLRC 72
+ + V P+ + D LF+ P FTP C+ +L K+ +
Sbjct: 5 LLLGDVAPNFEANTTVGRIRFHDFLGDSWGILFSHPRDFTPVCT-TELGRAAKLAPEFAK 63
Query: 73 EGIEEVYCLSVNDAFVMNAWGKKLEIK---------NVKLLPDGSGEFTRKMGMLVYKDN 123
+ ++ LS++ AW K + ++ D + E +GML +
Sbjct: 64 RNV-KLIALSIDSVEDHLAWSKDINAYNSEEPTEKLPFPIIDDRNRELAILLGMLDPAEK 122
Query: 124 VGFGL 128
G+
Sbjct: 123 DEKGM 127
>3gkn_A Bacterioferritin comigratory protein; BCP, PRX, atypical 2-Cys,
oxidoreductase; HET: BIH; 1.47A {Xanthomonas campestris
PV} PDB: 3gkk_A 3gkm_A
Length = 163
Score = 46.3 bits (109), Expect = 4e-06
Identities = 20/151 (13%), Positives = 47/151 (31%), Gaps = 16/151 (10%)
Query: 29 KDVNTQDLFAGKRVFLFALPGAFTPTCSDHQLPGFEKIYDDLRCEGIEEVYCLSVNDAFV 88
+ AG + ++ P TP + F + + G ++ +S +
Sbjct: 26 TQTTLRA-HAGHWLVIYFYPKDSTPGA-TTEGLDFNALLPEFDKAGA-KILGVSRDSVKS 82
Query: 89 MNAWGKKLEIKNVKLLPDGSGEFTRKMGMLVYKDNVGFGLRSW-RYGALI-KDMVVESWF 146
+ + K + DG R ++ K+ G + R L+ + V +
Sbjct: 83 HDNFCAKQGFAFPLVS-DGDEALCRAFDVIKEKNMYGKQVLGIERSTFLLSPEGQVVQAW 141
Query: 147 VEEGFSDNCATDPYEISSPENVLKVIRESKK 177
+ + + + VL ++ K
Sbjct: 142 RKVKVAGH----------ADAVLAALKAHAK 162
>2v2g_A Peroxiredoxin 6; oxidoreductase, antioxidant enzymes; 1.60A
{Arenicola marina} PDB: 2v32_A 2v41_A
Length = 233
Score = 45.1 bits (106), Expect = 8e-06
Identities = 22/134 (16%), Positives = 46/134 (34%), Gaps = 9/134 (6%)
Query: 13 MRVATVLPDGSKAFQWKDVNTQDLFAGKRVFLFALPGAFTPTCSDHQLPGFEKIYDDLRC 72
+ + V P+ + D LF+ P FTP + L ++ D +
Sbjct: 3 ITLGEVFPNFEADSTIGKLKFHDWLGNSWGVLFSHPRDFTPVSTTE-LGRVIQLEGDFKK 61
Query: 73 EGIEEVYCLSVNDAFVMNAWGKKLEIK-------NVKLLPDGSGEFTRKMGMLVYKDNVG 125
G+ ++ LS ++ W + ++ ++ D + E K+GM+ +
Sbjct: 62 RGV-KLIALSCDNVADHKEWSEDVKCLSGVKGDMPYPIIADETRELAVKLGMVDPDERTS 120
Query: 126 FGLRSWRYGALIKD 139
G+ I
Sbjct: 121 TGMPLTCRAVFIIG 134
>3hvv_A Thiol peroxidase, scavengase P20; oxidoreductase, TPX,
peroxiredoxin, antioxidant; 1.75A {Escherichia coli
k-12} PDB: 3hvs_A* 1qxh_A* 3i43_A* 3hvx_A
Length = 167
Score = 44.1 bits (103), Expect = 2e-05
Identities = 25/119 (21%), Positives = 44/119 (36%), Gaps = 7/119 (5%)
Query: 33 TQDLFAGKRVFLFALPGAFTPTCSDHQLPGFEKIYDDLRCEGIEEVYCLSVNDAFVMNAW 92
T FAGKR L P T + + + V C+S + F + +
Sbjct: 38 TLGQFAGKRKVLNIFPSIDTGVSAASVRKFNQLATEIDNTV----VLCISADLPFAQSRF 93
Query: 93 GKKLEIKN-VKLLPDGSGEFTRKMGMLVYKDNVGFGLRSWRYGALIKD-MVVESWFVEE 149
+ N + L + EF + G+ + D GL + + ++ V+ S V+E
Sbjct: 94 CGAEGLNNVITLSTFRNAEFLQAYGVAI-ADGPLKGLAARAVVVIDENDNVIFSQLVDE 151
>1uul_A Tryparedoxin peroxidase homologue; peroxiredoxin, oxidoreductase;
2.8A {Trypanosoma cruzi} SCOP: c.47.1.10
Length = 202
Score = 44.0 bits (103), Expect = 2e-05
Identities = 24/118 (20%), Positives = 42/118 (35%), Gaps = 13/118 (11%)
Query: 15 VATVLPDGSKAFQWKDVNTQDLFAGKRVFLFALPGAFTPTCSDHQLPGFEKIYDDLRCEG 74
++P+G+ K V + GK + LF P FT C +
Sbjct: 17 ETALMPNGTF----KKVALTS-YKGKWLVLFFYPMDFTFVCPTEICQFS--DRVKEFSDI 69
Query: 75 IEEVYCLSVNDAFVMNAWGKKLEIK------NVKLLPDGSGEFTRKMGMLVYKDNVGF 126
EV S++ + AW + N+ +L D + + G+L +D V +
Sbjct: 70 GCEVLACSMDSEYSHLAWTSIERKRGGLGQMNIPILADKTKCIMKSYGVLKEEDGVAY 127
>1qmv_A Human thioredoxin peroxidase-B; peroxiredoxin, sulphinic acid; 1.7A
{Homo sapiens} SCOP: c.47.1.10 PDB: 1qq2_A 2z9s_A 2rii_A
3hy2_A*
Length = 197
Score = 39.7 bits (92), Expect = 4e-04
Identities = 25/102 (24%), Positives = 39/102 (38%), Gaps = 9/102 (8%)
Query: 29 KDVNTQDLFAGKRVFLFALPGAFTPTCSDHQLPGFEKIYDDLRCEGIEEVYCLSVNDAFV 88
K+V D + GK V LF P FT + + D + EV +SV+ F
Sbjct: 25 KEVKLSD-YKGKYVVLFFYPLDFTFVAPTEIIAFSNRAEDFRKLG--CEVLGVSVDSQFT 81
Query: 89 MNAWGKKLEIK------NVKLLPDGSGEFTRKMGMLVYKDNV 124
AW + N+ LL D + + G+L + +
Sbjct: 82 HLAWINTPRKEGGLGPLNIPLLADVTRRLSEDYGVLKTDEGI 123
>3keb_A Probable thiol peroxidase; structural genomics, APC40679, PSI-2,
protein structure initiative, midwest center for
structural genomics; HET: MSE; 1.80A {Chromobacterium
violaceum}
Length = 224
Score = 39.3 bits (91), Expect = 4e-04
Identities = 15/122 (12%), Positives = 38/122 (31%), Gaps = 4/122 (3%)
Query: 29 KDVNTQDLFAGKRVFLFALPGAFTPTCSDHQLPGFEKIYDDLRCEGIEEVYCLSVNDAFV 88
D + F+ + L + L E ++ ++V+
Sbjct: 39 HDAALES-FSHTPKLIVTLLSVDEDEHA-GLLLLRETRRFLDS-WPHLKLIVITVDSPSS 95
Query: 89 MNAWGKKLEIKNVKLLPD-GSGEFTRKMGMLVYKDNVGFGLRSWRYGALIKDMVVESWFV 147
+ + + N+ LL +F ++ G+L+ + + A ++V S +
Sbjct: 96 LARARHEHGLPNIALLSTLRGRDFHKRYGVLITEYPLSGYTSPAIILADAANVVHYSERL 155
Query: 148 EE 149
Sbjct: 156 AN 157
>3a2v_A Probable peroxiredoxin; thioredoxin peroxidase, hydrogen peroxide,
antioxidant, oxidoreductase, redox-active center; 1.65A
{Aeropyrum pernix K1} PDB: 1x0r_A 2zct_A 2nvl_A 2e2g_A
2cv4_A* 3a5w_A 2e2m_A 3a2x_A 3a2w_A
Length = 249
Score = 39.4 bits (91), Expect = 5e-04
Identities = 26/117 (22%), Positives = 46/117 (39%), Gaps = 15/117 (12%)
Query: 22 GSKA--FQWKDVN------TQDLFAGKRVFLFALPGAFTPTCSDHQLPGFEKIYDDLRCE 73
G + + + + GK LF+ P FTP C+ + F + Y+D +
Sbjct: 8 GERFPEMEVTTDHGVIKLPDHYVSQGKWFVLFSHPADFTPVCT-TEFVSFARRYEDFQRL 66
Query: 74 GIEEVYCLSVNDAFVMNAWGKKLEIKNVKLLP-----DGSGEFTRKMGMLVYKDNVG 125
G++ LSV+ F W + +E +P D G R++G+L +
Sbjct: 67 GVDL-IGLSVDSVFSHIKWKEWIERHIGVRIPFPIIADPQGTVARRLGLLHAESATH 122
>2pn8_A Peroxiredoxin-4; thioredoxin, oxidoreductase, structural genomics
consortium, SGC; 1.80A {Homo sapiens}
Length = 211
Score = 38.6 bits (89), Expect = 7e-04
Identities = 25/114 (21%), Positives = 45/114 (39%), Gaps = 13/114 (11%)
Query: 16 ATVLPDGSKAFQWKDVNTQDLFAGKRVFLFALPGAFTPTCSDHQLPGFEKIYDDLRCEGI 75
T + DG ++K++ D + GK + F P FT C ++ F ++ R
Sbjct: 30 GTAVIDG----EFKELKLTD-YRGKYLVFFFYPLDFTFVCP-TEIIAFGDRLEEFRSINT 83
Query: 76 EEVYCLSVNDAFVMNAWGKKLEIK------NVKLLPDGSGEFTRKMGMLVYKDN 123
EV SV+ F AW + + LL D + + ++ G+ +
Sbjct: 84 -EVVACSVDSQFTHLAWINTPRRQGGLGPIRIPLLSDLTHQISKDYGVYLEDSG 136
>2bmx_A Alkyl hydroperoxidase C; peroxiredoxin, antioxidant defense system,
oxidoreductase, structural proteomics in europe, spine;
2.4A {Mycobacterium tuberculosis} SCOP: c.47.1.10
Length = 195
Score = 38.0 bits (87), Expect = 0.001
Identities = 17/98 (17%), Positives = 31/98 (31%), Gaps = 5/98 (5%)
Query: 33 TQDLFAGKRVFLFALPGAFTPTCSDHQLPGFEKIYDDLRCEGIEEVYCLSVNDAFVMNAW 92
T D GK +F P FT C + + + ++ +S++ F W
Sbjct: 39 TSDEHPGKWRVVFFWPKDFTFVCPTEIAAFSKLNDEFEDRDA--QILGVSIDSEFAHFQW 96
Query: 93 GKKLEIK---NVKLLPDGSGEFTRKMGMLVYKDNVGFG 127
+ +L D E ++ G+L
Sbjct: 97 RAQHNDLKTLPFPMLSDIKRELSQAAGVLNADGVADRV 134
>2c0d_A Thioredoxin peroxidase 2; peroxiredoxin, 2-Cys, thioredoxin
dependant, mitochondrial, antioxidant, oxidoreductase,
redox-active center; 1.78A {Plasmodium falciparum}
Length = 221
Score = 37.8 bits (87), Expect = 0.001
Identities = 18/105 (17%), Positives = 35/105 (33%), Gaps = 8/105 (7%)
Query: 19 LPDGSKAFQWKDVNTQDLFAGKRVFLFALPGAFTPTCSDHQLPGFEKIYDDLRCEGIEEV 78
+K + +V+ K L P +T C ++ F K D E+
Sbjct: 36 AQGLNKNNEIINVDLSSFIGQKYCCLLFYPLNYTFVC-PTEIIEFNKHIKD-FENKNVEL 93
Query: 79 YCLSVNDAFVMNAWGKKLEIK------NVKLLPDGSGEFTRKMGM 117
+SV+ + AW K L+ D + + ++ +
Sbjct: 94 LGISVDSVYSHLAWKNMPIEKGGIGNVEFTLVSDINKDISKNYNV 138
>1zof_A Alkyl hydroperoxide-reductase; decamer, toroide-shaped complex,
oxidoreductase; 2.95A {Helicobacter pylori} SCOP:
c.47.1.10
Length = 198
Score = 37.1 bits (85), Expect = 0.003
Identities = 20/96 (20%), Positives = 34/96 (35%), Gaps = 8/96 (8%)
Query: 29 KDVNTQDLFAGKRVFLFALPGAFTPTCSDHQLPGFEKIYDDLRCEGIEEVYCLSVNDAFV 88
+ V LF P FT C ++ F+K D +G V +S++ V
Sbjct: 23 EHFELSKNLGKNGVILFFWPKDFTFVC-PTEIIAFDKRVKDFHEKGF-NVIGVSIDSEQV 80
Query: 89 MNAWGKKLEIK------NVKLLPDGSGEFTRKMGML 118
AW K + ++ D + +R +L
Sbjct: 81 HFAWKNTPVEKGGIGQVSFPMVADITKSISRDYDVL 116
>2h01_A 2-Cys peroxiredoxin; thioredoxin peroxidase, structural genomics,
SGC, structural genomics consortium, oxidoreductase;
2.30A {Plasmodium yoelii} SCOP: c.47.1.10
Length = 192
Score = 36.3 bits (83), Expect = 0.004
Identities = 23/106 (21%), Positives = 37/106 (34%), Gaps = 8/106 (7%)
Query: 19 LPDGSKAFQWKDVNTQDLFAGKRVFLFALPGAFTPTCSDHQLPGFEKIYDDLRCEGIEEV 78
+ +V+ D K V L+ P FT C ++ +K D + + E+
Sbjct: 11 AEAVFGDNTFGEVSLSDFIGKKYVLLYFYPLDFTFVC-PSEIIALDKALDSFKERNV-EL 68
Query: 79 YCLSVNDAFVMNAWGKKLEIK------NVKLLPDGSGEFTRKMGML 118
SV+ F AW K + L+ D S R +L
Sbjct: 69 LGCSVDSKFTHLAWKKTPLSQGGIGNIKHTLISDISKSIARSYDVL 114
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl reductase,
beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 2006
Score = 35.7 bits (82), Expect = 0.006
Identities = 27/117 (23%), Positives = 38/117 (32%), Gaps = 42/117 (35%)
Query: 45 FALPGAFTPTCSDHQLPGFEKIYDDLRCEGIE--------EVYC---------LSVN--- 84
F LP +P S +P + I DL + VY LS +
Sbjct: 420 F-LP-VASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISE 477
Query: 85 DAFVM------NAWGKKLEIKNVKLL---PDG-SGEFTRKMGMLVY--KDNVGFGLR 129
W + K +L P G SG +G+L + KD G G+R
Sbjct: 478 RIVDCIIRLPVK-WETTTQFKATHILDFGPGGASG-----LGVLTHRNKD--GTGVR 526
>1we0_A Alkyl hydroperoxide reductase C; peroxiredoxin, AHPC,
oxidoreductase; 2.90A {Amphibacillus xylanus} SCOP:
c.47.1.10
Length = 187
Score = 34.4 bits (78), Expect = 0.016
Identities = 22/99 (22%), Positives = 39/99 (39%), Gaps = 6/99 (6%)
Query: 29 KDVNTQDLFAGKRVFLFALPGAFTPTCSDHQLPGFEKIYDDLRCEGIEEVYCLSVNDAFV 88
+V D GK + P F+ C +L +K Y + + EVY +S + FV
Sbjct: 22 FEVTEAD-LKGKWSIVVFYPADFSFVC-PTELEDVQKEYAE-LKKLGVEVYSVSTDTHFV 78
Query: 89 MNAWG---KKLEIKNVKLLPDGSGEFTRKMGMLVYKDNV 124
AW + ++ D S +R+ +L + +
Sbjct: 79 HKAWHENSPAVGSIEYIMIGDPSQTISRQFDVLNEETGL 117
>1xcc_A 1-Cys peroxiredoxin; unknown function, structural genomics,
structural genomics consortium, SGC; 2.30A {Plasmodium
yoelii} SCOP: c.47.1.10
Length = 220
Score = 34.0 bits (77), Expect = 0.021
Identities = 20/117 (17%), Positives = 40/117 (34%), Gaps = 8/117 (6%)
Query: 29 KDVNTQDLFAGKRVFLFALPGAFTPTCSDHQLPGFEKIYDDLRCEGIEEVYCLSVNDAFV 88
D LF+ P FTP C+ +L K+++D ++ S N
Sbjct: 21 GDFELYKYIENSWAILFSHPNDFTPVCT-TELAELGKMHEDFLKLNC-KLIGFSCNSKES 78
Query: 89 MNAWGKKLEIK------NVKLLPDGSGEFTRKMGMLVYKDNVGFGLRSWRYGALIKD 139
+ W + ++ + ++ D S E K+ ++ ++ GL
Sbjct: 79 HDKWIEDIKYYGKLNKWEIPIVCDESRELANKLKIMDEQEKDITGLPLTCRCLFFIS 135
>1zye_A Thioredoxin-dependent peroxide reductase; catenane, dodecamer,
peroxiredoxin, oxidoreductase; 3.30A {Bos taurus} SCOP:
c.47.1.10
Length = 220
Score = 32.5 bits (73), Expect = 0.052
Identities = 27/104 (25%), Positives = 43/104 (41%), Gaps = 9/104 (8%)
Query: 27 QWKDVNTQDLFAGKRVFLFALPGAFTPTCSDHQLPGFEKIYDDLRCEGIEEVYCLSVNDA 86
++K+++ D F GK + LF P FT C F + EV +SV+
Sbjct: 45 EFKEISLDD-FKGKYLVLFFYPLDFTFVCPTEI-IAFSDKASEFHDVNC-EVVAVSVDSH 101
Query: 87 FVMNAWGKK------LEIKNVKLLPDGSGEFTRKMGMLVYKDNV 124
F AW L N+ LL D + + +R G+L+ +
Sbjct: 102 FSHLAWINTPRKNGGLGHMNIALLSDLTKQISRDYGVLLEGPGL 145
>1vki_A Hypothetical protein ATU3699; 15159614, structural genomics, JCSG,
PSI, protein structure initiative; 1.60A {Agrobacterium
tumefaciens str} SCOP: d.116.1.1
Length = 181
Score = 25.8 bits (56), Expect = 4.9
Identities = 8/57 (14%), Positives = 14/57 (24%)
Query: 24 KAFQWKDVNTQDLFAGKRVFLFALPGAFTPTCSDHQLPGFEKIYDDLRCEGIEEVYC 80
K + +L +PG+ T + + D E V
Sbjct: 91 KTIGAASRVSFGRPEKMLEYLGVVPGSVTVFGAINDTARQVTFVLDSDLLENELVNG 147
>1nxm_A DTDP-6-deoxy-D-XYLO-4-hexulose 3,5-epimerase; jelly roll-like
structure, beta sheet, isomerase; 1.30A {Streptococcus
suis} SCOP: b.82.1.1 PDB: 1nyw_A* 1nzc_A* 2ixl_A*
Length = 197
Score = 25.4 bits (55), Expect = 8.0
Identities = 18/66 (27%), Positives = 31/66 (46%), Gaps = 5/66 (7%)
Query: 90 NAWGKKLEIKNVKLLPDGSGEFTRKMGMLVYKDNVGFGLRSWRYGALIKDMVVESWFVEE 149
N +GK L + V+ +P G EF V+ DN G+ +++ ++ ES+F E
Sbjct: 4 NFFGKTLAARPVEAIP-GMLEFDIP----VHGDNRGWFKENFQKEKMLPLGFPESFFAEG 58
Query: 150 GFSDNC 155
+N
Sbjct: 59 KLQNNV 64
Database: pdb70
Posted date: Jan 26, 2011 11:21 AM
Number of letters in database: 5,693,230
Number of sequences in database: 24,244
Lambda K H
0.323 0.140 0.436
Gapped
Lambda K H
0.267 0.0547 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 1,638,000
Number of extensions: 74865
Number of successful extensions: 170
Number of sequences better than 10.0: 1
Number of HSP's gapped: 158
Number of HSP's successfully gapped: 33
Length of query: 177
Length of database: 5,693,230
Length adjustment: 86
Effective length of query: 91
Effective length of database: 3,608,246
Effective search space: 328350386
Effective search space used: 328350386
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.6 bits)