HHsearch alignment for GI: 254780312 and conserved domain: COG3706

>COG3706 PleD Response regulator containing a CheY-like receiver domain and a GGDEF domain [Signal transduction mechanisms].

Probab=98.97  E-value=7.4e-10  Score=80.06  Aligned_cols=92  Identities=26%  Similarity=0.367  Sum_probs=82.0

Q ss_pred             CEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHCCCCEEEECCCC
Q ss_conf             89999999799999997189989999836559997999999998589985999943797899999997699869976979
Q gi|254780312|r   27 YEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFH  106 (122)
Q Consensus        27 ~~v~~a~~g~~al~~~~~~~~dlii~D~~mP~~dG~el~~~ir~~~~~~pii~~s~~~~~~~~~~~~~~g~~~~l~KP~~  106 (122)
T Consensus        13 ~~v~~a~~g~~~l~~~~~~~~~~~lld~~m~~~~~~~~~~~lk~~-~~~-~v~~t~~~~~~~~~~~~~~~~~~~l~~~~~   90 (435)
T COG3706          13 KEVATAKKGLIALAILLDHKPDYKLLDVMMPGMDGFELCRRLKAE-PAT-VVMVTALDDSAPRVRGLKAGADDFLTKPVN   90 (435)
T ss_pred             HHHHHCCCHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHCC-CCC-EEEEEECCCCCCCHHHHHHHHHHHCCCCCC
T ss_conf             546342542779999744898748741006886730199876358-751-699860378777556776313441367777


Q ss_pred             HHHHHHHHHHHHHC
Q ss_conf             89999999999603
Q gi|254780312|r  107 LRDLVNEVNRLLTI  120 (122)
Q Consensus       107 ~~~L~~~i~~~l~~  120 (122)
T Consensus        91 ~~~~~~r~~~l~~~  104 (435)
T COG3706          91 DSQLFLRAKSLVRL  104 (435)
T ss_pred             HHHHHHHHHHHCCC
T ss_conf             17788752663144