HHsearch alignment for GI: 254780312 and conserved domain: COG3707
>COG3707 AmiR Response regulator with putative antiterminator output domain [Signal transduction mechanisms].
Probab=99.57 E-value=6e-14 Score=104.58 Aligned_cols=117 Identities=21% Similarity=0.252 Sum_probs=102.7
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHHCCCEEE-EECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCEEE
Q ss_conf 986699975998999999999998898999-9999799999997189989999836559997999999998589985999
Q gi|254780312|r 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVV-SCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELDPDLKVMF 79 (122)
Q Consensus 1 M~~rILiVDD~~~~r~~l~~~L~~~G~~v~-~a~~g~~al~~~~~~~~dlii~D~~mP~~dG~el~~~ir~~~~~~pii~ 79 (122)
T Consensus 4 ~~lrvlv~~d~~i~~~~i~~~l~eag~~~Vg~~~~~~~~~~~~~~~~pDvVildie~p~rd-~~e~~~~~~~~~~~piv~ 82 (194)
T COG3707 4 MLLRVLVADDEALTRMDIREGLLEAGYQRVGEAADGLEAVEVCERLQPDVVILDIEMPRRD-IIEALLLASENVARPIVA 82 (194)
T ss_pred CCCCEEECCCCCCCHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHCCCCEEEEECCCCCCC-HHHHHHHHHCCCCCCEEE
T ss_conf 6653034241135556789899875973876541344750677852998799966787732-899989860589987899
Q ss_pred EECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHH
Q ss_conf 943797899999997699869976979899999999996
Q gi|254780312|r 80 ITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 (122)
Q Consensus 80 ~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~l 118 (122)
T Consensus 83 lt~~s~p~~i~~a~~~Gv~ayivkpi~~~rl~p~L~vA~ 121 (194)
T COG3707 83 LTAYSDPALIEAAIEAGVMAYIVKPLDESRLLPILDVAV 121 (194)
T ss_pred EECCCCHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHH
T ss_conf 971678589999997387498834765421047999999